Query 034173
Match_columns 102
No_of_seqs 111 out of 1008
Neff 6.4
Searched_HMMs 29240
Date Mon Mar 25 18:04:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034173.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034173hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3plu_A Ubiquitin-like modifier 99.9 1.2E-23 4.2E-28 136.8 8.3 76 4-87 16-91 (93)
2 3phx_B Ubiquitin-like protein 99.9 8.4E-23 2.9E-27 126.5 9.0 76 8-91 3-78 (79)
3 4a20_A Ubiquitin-like protein 99.9 3E-22 1E-26 130.9 9.9 77 7-91 17-97 (98)
4 4eew_A Large proline-rich prot 99.9 1.5E-22 5E-27 127.8 8.1 77 4-89 12-88 (88)
5 3v6c_B Ubiquitin; structural g 99.9 3.8E-22 1.3E-26 127.1 8.8 77 6-90 14-90 (91)
6 4dwf_A HLA-B-associated transc 99.9 3.8E-22 1.3E-26 126.4 8.6 79 6-93 2-80 (90)
7 2wyq_A HHR23A, UV excision rep 99.9 9.9E-22 3.4E-26 122.8 9.5 77 7-91 3-82 (85)
8 1uh6_A Ubiquitin-like 5; beta- 99.9 4E-22 1.4E-26 131.1 7.7 72 8-87 27-98 (100)
9 3dbh_I NEDD8; cell cycle, acti 99.9 6.2E-22 2.1E-26 124.3 8.2 77 7-91 10-86 (88)
10 2faz_A Ubiquitin-like containi 99.9 1.2E-21 4.2E-26 120.8 9.3 76 9-91 2-78 (78)
11 2kk8_A Uncharacterized protein 99.9 4.7E-22 1.6E-26 126.0 7.1 74 9-90 10-84 (84)
12 2lxa_A Ubiquitin-like protein 99.9 5.2E-22 1.8E-26 127.2 7.3 75 9-91 1-79 (87)
13 4fbj_B NEDD8; effector-HOST ta 99.9 7.4E-22 2.5E-26 125.5 7.6 76 10-93 1-76 (88)
14 1wgd_A Homocysteine-responsive 99.9 1.1E-21 3.8E-26 125.5 8.4 81 5-92 3-88 (93)
15 2dzi_A Ubiquitin-like protein 99.9 1.5E-21 5.2E-26 120.6 8.2 77 6-90 4-80 (81)
16 1ndd_A NEDD8, protein (ubiquit 99.9 2E-21 6.7E-26 118.3 8.5 75 10-92 1-75 (76)
17 3mtn_B UBA80, ubcep1, ubiquiti 99.9 2E-21 6.9E-26 120.8 8.7 77 8-92 2-78 (85)
18 1uel_A HHR23B, UV excision rep 99.9 2.7E-21 9.2E-26 124.4 9.5 76 10-93 1-79 (95)
19 2hj8_A Interferon-induced 17 k 99.9 1.2E-21 4E-26 124.4 7.6 77 8-92 3-79 (88)
20 3n3k_B Ubiquitin; hydrolase, p 99.9 1.2E-21 4.1E-26 122.0 7.4 77 8-92 2-78 (85)
21 1wy8_A NP95-like ring finger p 99.9 4.2E-21 1.4E-25 121.2 9.8 80 6-93 4-85 (89)
22 1wh3_A 59 kDa 2'-5'-oligoadeny 99.9 2.5E-21 8.6E-26 121.6 8.7 80 6-93 4-83 (87)
23 3m62_B UV excision repair prot 99.9 1.5E-21 5E-26 128.3 7.9 75 9-91 1-75 (106)
24 2uyz_B Small ubiquitin-related 99.9 1.4E-21 4.8E-26 121.0 7.3 77 8-92 2-78 (79)
25 3a9j_A Ubiquitin; protein comp 99.8 4.1E-21 1.4E-25 116.8 8.6 75 10-92 1-75 (76)
26 4hcn_B Polyubiquitin, ubiquiti 99.8 1.9E-21 6.6E-26 125.7 7.5 77 7-91 20-96 (98)
27 1yqb_A Ubiquilin 3; structural 99.8 4.1E-21 1.4E-25 125.2 9.0 83 2-93 15-97 (100)
28 2kan_A Uncharacterized protein 99.8 5E-21 1.7E-25 123.5 8.8 78 7-93 13-91 (94)
29 1wyw_B Ubiquitin-like protein 99.8 4.1E-21 1.4E-25 124.2 8.0 78 7-92 19-96 (97)
30 3k9o_B Ubiquitin, UBB+1; E2-25 99.8 7.1E-21 2.4E-25 121.6 8.4 77 10-94 2-78 (96)
31 1ttn_A DC-UBP, dendritic cell- 99.8 6.6E-21 2.3E-25 125.0 8.3 78 8-93 22-99 (106)
32 3vdz_A Ubiquitin-40S ribosomal 99.8 1.1E-20 3.6E-25 125.1 9.0 76 8-91 34-109 (111)
33 1sif_A Ubiquitin; hydrophobic 99.8 6.2E-21 2.1E-25 121.2 7.4 76 9-92 9-84 (88)
34 2daf_A FLJ35834 protein; hypot 99.8 7.9E-21 2.7E-25 128.1 8.2 80 8-95 14-94 (118)
35 1j8c_A Ubiquitin-like protein 99.8 1.2E-20 4.2E-25 127.6 9.1 82 2-92 25-106 (125)
36 2bwf_A Ubiquitin-like protein 99.8 1.7E-20 5.7E-25 114.9 8.2 73 9-90 4-76 (77)
37 1wju_A NEDD8 ultimate buster-1 99.8 1.8E-20 6.2E-25 123.2 8.8 76 9-92 15-94 (100)
38 1yx5_B Ubiquitin; proteasome, 99.8 3.3E-20 1.1E-24 119.4 9.3 76 10-93 1-76 (98)
39 2klc_A Ubiquilin-1; ubiquitin- 99.8 3.6E-20 1.2E-24 120.7 9.2 78 6-92 22-99 (101)
40 1wx8_A Riken cDNA 4931431F19; 99.8 1.4E-20 4.8E-25 120.7 6.3 78 6-92 14-91 (96)
41 2l7r_A Ubiquitin-like protein 99.8 1.7E-20 5.7E-25 120.5 6.6 76 7-92 17-92 (93)
42 1wx7_A Ubiquilin 3; ubiquitin- 99.8 4.7E-20 1.6E-24 120.6 8.5 80 4-92 12-91 (106)
43 3b1l_X E3 ubiquitin-protein li 99.7 9.1E-22 3.1E-26 120.7 0.0 74 10-91 1-74 (76)
44 3rt3_B Ubiquitin-like protein 99.8 7.8E-20 2.7E-24 126.0 9.5 79 7-93 79-157 (159)
45 2kdb_A Homocysteine-responsive 99.8 2.5E-20 8.7E-25 121.9 6.5 72 8-87 22-99 (99)
46 1we6_A Splicing factor, putati 99.8 9.5E-20 3.3E-24 120.2 9.1 78 7-92 25-106 (111)
47 1se9_A Ubiquitin family; ubiqu 99.8 1.7E-19 5.7E-24 122.9 10.5 84 4-92 11-105 (126)
48 1v5o_A 1700011N24RIK protein; 99.8 6.4E-20 2.2E-24 119.5 7.8 79 7-93 5-88 (102)
49 3l0w_B Monoubiquitinated proli 99.8 1E-19 3.5E-24 128.4 9.2 74 10-91 1-74 (169)
50 2ojr_A Ubiquitin; lanthide-bin 99.8 1.7E-19 5.8E-24 119.1 9.5 76 8-91 34-109 (111)
51 3m63_B Ubiquitin domain-contai 99.8 1.7E-20 5.7E-25 122.5 4.6 75 8-91 27-101 (101)
52 1wia_A Hypothetical ubiquitin- 99.8 1.4E-19 4.9E-24 115.9 8.7 77 7-94 5-82 (95)
53 1v2y_A 3300001G02RIK protein; 99.8 2.9E-20 9.8E-25 123.1 5.5 78 8-93 6-99 (105)
54 1wxv_A BAG-family molecular ch 99.8 1.3E-19 4.5E-24 115.5 8.2 79 7-94 5-89 (92)
55 1wgh_A Ubiquitin-like 3, HCG-1 99.8 3.6E-19 1.2E-23 119.6 10.7 79 7-91 14-100 (116)
56 2kdi_A Ubiquitin, vacuolar pro 99.8 2.1E-19 7.3E-24 119.5 8.5 78 8-93 8-85 (114)
57 1x1m_A Ubiquitin-like protein 99.8 2.9E-19 1E-23 117.3 8.9 77 8-92 11-102 (107)
58 3u30_A Ubiquitin, linear DI-ub 99.8 3.1E-19 1.1E-23 124.8 9.5 79 7-93 18-96 (172)
59 3rt3_B Ubiquitin-like protein 99.8 3.6E-19 1.2E-23 122.7 9.2 73 10-90 3-77 (159)
60 2gow_A HCG-1 protein, ubiquiti 99.8 7.1E-19 2.4E-23 119.5 10.0 79 7-91 15-101 (125)
61 2fnj_B Transcription elongatio 99.8 1.3E-19 4.5E-24 122.2 6.0 76 10-93 1-83 (118)
62 2dzj_A Synaptic glycoprotein S 99.8 5.1E-19 1.7E-23 113.2 8.0 72 9-86 10-85 (88)
63 1v5t_A 8430435I17RIK protein; 99.8 1.8E-19 6.1E-24 115.0 5.9 75 7-90 5-83 (90)
64 1wgg_A Ubiquitin carboxyl-term 99.8 2.5E-19 8.7E-24 116.0 6.3 76 7-91 5-80 (96)
65 4dbg_A Ranbp-type and C3HC4-ty 99.8 5.9E-19 2E-23 116.9 8.1 75 9-91 24-101 (105)
66 4ajy_B Transcription elongatio 99.8 3.2E-19 1.1E-23 120.3 6.4 74 10-90 1-81 (118)
67 3q3f_A Ribonuclease/ubiquitin 99.8 5.8E-19 2E-23 127.1 7.6 77 9-93 105-181 (189)
68 3u5e_m 60S ribosomal protein L 99.8 2.2E-20 7.6E-25 126.1 0.0 75 10-92 1-75 (128)
69 3b08_A Polyubiquitin-C, ubiqui 99.8 2.1E-18 7.1E-23 116.9 9.3 75 10-92 1-75 (152)
70 1we7_A SF3A1 protein; structur 99.8 1.3E-18 4.4E-23 115.4 8.1 78 7-92 23-110 (115)
71 3b08_A Polyubiquitin-C, ubiqui 99.8 2.5E-18 8.6E-23 116.5 9.2 77 8-92 75-151 (152)
72 1v86_A DNA segment, CHR 7, way 99.8 4.6E-19 1.6E-23 114.4 4.6 76 8-93 16-91 (95)
73 2kd0_A LRR repeats and ubiquit 99.7 1.9E-18 6.6E-23 109.3 6.6 72 9-89 12-83 (85)
74 3u5c_f 40S ribosomal protein S 99.7 9.7E-20 3.3E-24 127.2 0.0 75 10-92 1-75 (152)
75 3u30_A Ubiquitin, linear DI-ub 99.7 3.9E-18 1.3E-22 119.2 7.3 77 7-91 94-170 (172)
76 2dzm_A FAS-associated factor 1 99.7 3.3E-18 1.1E-22 112.2 5.8 81 7-96 6-88 (100)
77 4b6w_A Tubulin-specific chaper 99.7 1.4E-17 4.7E-22 106.2 8.5 75 10-91 3-85 (86)
78 3ai5_A Yeast enhanced green fl 99.7 2.3E-17 7.8E-22 126.3 8.6 76 7-90 231-306 (307)
79 2kjr_A CG11242; UBL, ubiquitin 99.7 2.8E-17 9.5E-22 106.6 7.7 73 7-87 13-93 (95)
80 1v6e_A Cytoskeleton-associated 99.7 1E-16 3.4E-21 103.1 8.4 77 9-92 7-90 (95)
81 2io1_B Small ubiquitin-related 99.7 9.2E-17 3.1E-21 103.9 7.7 88 6-101 4-91 (94)
82 2kj6_A Tubulin folding cofacto 99.7 8.7E-17 3E-21 104.7 7.4 76 7-90 12-96 (97)
83 1wf9_A NPL4 family protein; be 99.7 9.2E-17 3.2E-21 105.5 6.3 75 8-91 6-96 (107)
84 1t0y_A Tubulin folding cofacto 99.7 4.3E-16 1.5E-20 104.6 8.8 78 8-92 5-89 (122)
85 1oqy_A HHR23A, UV excision rep 99.7 1.3E-16 4.3E-21 124.6 6.9 79 7-91 5-84 (368)
86 2xzm_9 RPS31E; ribosome, trans 99.6 2E-17 7E-22 119.2 0.0 69 10-91 1-69 (189)
87 3shq_A UBLCP1; phosphatase, hy 99.6 9.5E-16 3.2E-20 117.6 5.9 75 7-90 3-80 (320)
88 2kzr_A Ubiquitin thioesterase 99.6 5.8E-16 2E-20 97.8 3.9 75 10-90 1-78 (86)
89 2io0_B Small ubiquitin-related 99.6 1.2E-14 4.3E-19 93.5 9.2 79 7-93 3-81 (91)
90 3a4r_A Nfatc2-interacting prot 99.6 1.3E-14 4.4E-19 90.9 8.3 76 4-87 2-78 (79)
91 1wm3_A Ubiquitin-like protein 99.6 1.1E-14 3.9E-19 89.4 7.3 70 10-87 2-71 (72)
92 2d07_B Ubiquitin-like protein 99.6 2.1E-14 7.1E-19 92.5 8.4 77 7-91 15-91 (93)
93 1wz0_A Ubiquitin-like protein 99.5 2.2E-14 7.6E-19 94.4 7.2 79 7-93 22-100 (104)
94 2k8h_A Small ubiquitin protein 99.5 4.1E-14 1.4E-18 94.1 6.2 80 7-94 24-103 (110)
95 1wjn_A Tubulin-folding protein 99.5 2.9E-13 9.8E-18 87.0 9.4 78 7-91 7-94 (97)
96 2eke_C Ubiquitin-like protein 99.5 2.9E-13 9.8E-18 89.5 8.0 76 7-91 29-104 (106)
97 3kyd_D Small ubiquitin-related 99.2 3.8E-11 1.3E-15 80.4 8.8 76 7-90 38-113 (115)
98 3pge_A SUMO-modified prolifera 99.1 2.7E-10 9.3E-15 82.5 9.3 85 7-100 27-113 (200)
99 3tix_A Ubiquitin-like protein 99.0 1.3E-09 4.4E-14 79.0 6.8 78 7-93 55-132 (207)
100 2pjh_A Protein NPL4, nuclear p 98.9 2.9E-10 1E-14 71.2 2.3 73 8-87 3-78 (80)
101 3goe_A DNA repair protein RAD6 98.8 2.9E-08 1E-12 62.4 8.4 73 8-88 8-81 (82)
102 3v7o_A Minor nucleoprotein VP3 98.8 6.9E-10 2.4E-14 81.4 0.2 79 6-93 18-96 (227)
103 2jxx_A Nfatc2-interacting prot 98.8 5.3E-08 1.8E-12 63.2 8.6 74 6-87 22-96 (97)
104 3uf8_A Ubiquitin-like protein 98.7 8E-08 2.7E-12 69.4 7.8 78 6-92 18-95 (209)
105 4da1_A Protein phosphatase 1K, 98.6 4.4E-09 1.5E-13 81.4 0.0 86 7-101 28-113 (389)
106 3ix6_A TS, tsase, thymidylate 98.5 9.2E-09 3.1E-13 80.1 0.0 80 3-91 15-94 (360)
107 2l76_A Nfatc2-interacting prot 98.5 8.1E-07 2.8E-11 57.5 7.8 76 6-90 18-93 (95)
108 4efo_A Serine/threonine-protei 98.4 4.6E-07 1.6E-11 58.6 5.0 49 13-63 16-64 (94)
109 2bps_A YUKD protein; ubiquitin 98.1 1.1E-05 3.8E-10 50.7 7.2 71 10-86 5-80 (81)
110 2kc2_A Talin-1, F1; FERM, adhe 97.9 1.2E-05 4.1E-10 54.5 4.3 70 11-88 13-121 (128)
111 3qx1_A FAS-associated factor 1 97.7 0.00041 1.4E-08 42.9 8.8 77 6-88 4-82 (84)
112 2al3_A TUG long isoform; TUG U 97.5 0.00036 1.2E-08 44.6 6.2 74 9-90 9-82 (90)
113 2dzk_A UBX domain-containing p 97.4 0.0013 4.5E-08 42.7 8.5 79 8-91 12-92 (109)
114 1wj4_A KIAA0794 protein; UBX d 97.0 0.0033 1.1E-07 41.8 7.5 76 8-89 42-119 (124)
115 4e71_A Plexin-B2, MM1; transme 97.0 0.01 3.6E-07 39.1 9.3 79 8-87 10-108 (111)
116 2cr5_A Reproduction 8; UBX dom 96.9 0.0072 2.5E-07 39.1 8.3 77 8-91 22-100 (109)
117 2r2o_A Plexin-B1; effector dom 96.7 0.013 4.4E-07 40.0 8.3 82 8-90 23-129 (138)
118 3jyu_A Ubiquitin carboxyl-term 96.6 0.0079 2.7E-07 43.6 7.2 64 24-93 155-224 (231)
119 3h6n_A Plexin-D1; structural g 96.4 0.066 2.3E-06 36.0 10.6 66 24-89 20-104 (127)
120 4a3p_A Ubiquitin carboxyl-term 96.4 0.014 4.8E-07 41.8 7.7 64 24-93 143-212 (217)
121 2l32_A Small archaeal modifier 96.3 0.014 4.7E-07 35.5 6.2 60 10-87 1-60 (74)
122 3rpf_C Molybdopterin convertin 96.3 0.041 1.4E-06 32.8 8.3 65 10-86 1-67 (74)
123 4e74_A Plexin-A4; RBD, structu 96.1 0.054 1.9E-06 35.9 8.7 83 8-90 12-115 (117)
124 3ivf_A Talin-1; FERM domain, c 96.0 0.091 3.1E-06 39.8 10.8 82 10-100 4-102 (371)
125 1ryj_A Unknown; beta/alpha pro 96.0 0.061 2.1E-06 31.8 7.9 61 9-87 4-64 (70)
126 1oey_A P67-PHOX, neutrophil cy 95.9 0.017 5.8E-07 36.2 5.1 49 7-60 3-51 (83)
127 1s3s_G P47 protein; AAA ATPase 95.6 0.032 1.1E-06 37.0 5.9 68 8-81 51-120 (127)
128 2daj_A KIAA0977 protein, COBL- 95.5 0.042 1.4E-06 34.9 5.9 76 8-96 9-87 (91)
129 3kuz_A Plexin-C1; structural g 95.0 0.14 4.9E-06 34.3 7.5 80 8-87 18-124 (126)
130 1vjk_A Molybdopterin convertin 94.4 0.44 1.5E-05 29.6 8.5 67 8-86 8-91 (98)
131 2kvr_A Ubiquitin carboxyl-term 94.1 0.031 1.1E-06 37.4 2.6 31 24-56 59-89 (130)
132 1wgk_A Riken cDNA 2900073H19 p 93.7 0.85 2.9E-05 29.6 9.1 35 8-42 10-54 (114)
133 3hm6_X Plexin-B1; structural g 93.0 0.65 2.2E-05 38.5 9.2 82 8-90 256-362 (644)
134 3onh_A Ubiquitin-activating en 92.3 0.29 1E-05 32.8 5.3 63 24-89 9-79 (127)
135 2juo_A GA-binding protein alph 92.1 0.28 9.6E-06 30.9 4.7 58 25-89 7-64 (89)
136 4eut_A Serine/threonine-protei 91.7 0.55 1.9E-05 35.0 6.9 47 14-62 315-361 (396)
137 3ig3_A Plxna3 protein; plexin 91.2 1.3 4.6E-05 36.6 9.0 83 8-90 232-335 (627)
138 2kmm_A Guanosine-3',5'-BIS(dip 91.0 0.42 1.4E-05 27.6 4.5 62 10-88 1-62 (73)
139 1fm0_D Molybdopterin convertin 90.7 1.1 3.9E-05 26.3 6.4 47 28-86 23-74 (81)
140 1y8x_B Ubiquitin-activating en 90.7 0.82 2.8E-05 29.1 5.9 62 24-88 8-83 (98)
141 1vd2_A Protein kinase C, IOTA 90.0 1.2 3.9E-05 28.0 6.1 79 7-90 4-88 (89)
142 3po0_A Small archaeal modifier 89.9 1.9 6.6E-05 25.8 7.0 51 24-86 21-82 (89)
143 2k9x_A Tburm1, uncharacterized 89.0 0.24 8.3E-06 32.1 2.4 71 9-86 4-95 (110)
144 2ylm_A Ubiquitin carboxyl-term 88.9 0.25 8.5E-06 39.7 2.9 31 24-56 39-69 (530)
145 2qjl_A URM1, ubiquitin-related 88.3 2.3 7.9E-05 26.3 6.7 33 10-42 2-43 (99)
146 2q5w_D Molybdopterin convertin 87.8 0.63 2.2E-05 27.2 3.6 50 24-86 19-70 (77)
147 2c7h_A RBBP6, retinoblastoma-b 86.6 2.8 9.7E-05 26.1 6.2 40 8-47 5-45 (86)
148 3dwg_C 9.5 kDa culture filtrat 86.2 3.9 0.00013 24.7 7.6 54 24-86 20-86 (93)
149 1tyg_B YJBS; alpha beta barrel 85.8 2 6.8E-05 26.6 5.3 62 8-87 19-81 (87)
150 1ip9_A BEM1 protein; ubiquitin 85.8 3.2 0.00011 25.9 6.1 47 9-60 12-58 (85)
151 3ivf_A Talin-1; FERM domain, c 84.3 8.3 0.00028 28.8 9.1 78 8-89 84-167 (371)
152 1wgr_A Growth factor receptor- 83.9 3.4 0.00012 26.3 5.8 71 8-86 8-89 (100)
153 1h4r_A Merlin; FERM, neurofibr 80.6 9.8 0.00034 27.7 8.1 72 8-88 21-97 (314)
154 2hj1_A Hypothetical protein; s 80.3 8.3 0.00028 24.2 6.6 69 8-86 11-82 (97)
155 1f0z_A THis protein; ubiquitin 80.3 4.5 0.00016 23.0 5.0 52 24-87 9-60 (66)
156 3hvz_A Uncharacterized protein 80.1 2.8 9.6E-05 25.3 4.2 61 11-88 7-67 (78)
157 2l52_A Methanosarcina acetivor 79.9 3.3 0.00011 25.6 4.6 67 9-86 3-92 (99)
158 3qa8_A MGC80376 protein; kinas 78.9 3.2 0.00011 34.3 5.4 42 18-62 320-361 (676)
159 2cu3_A Unknown function protei 78.5 5.6 0.00019 22.5 5.0 50 25-87 9-58 (64)
160 2g1e_A Hypothetical protein TA 78.3 8.2 0.00028 22.8 6.5 55 24-86 18-83 (90)
161 1ef1_A Moesin; membrane, FERM 77.3 5.1 0.00017 28.8 5.6 72 9-89 1-78 (294)
162 2ylm_A Ubiquitin carboxyl-term 76.7 1.8 6.2E-05 34.7 3.2 77 8-91 129-219 (530)
163 1rws_A Hypothetical protein PF 75.8 0.87 3E-05 27.1 0.9 47 24-86 24-70 (77)
164 2i1j_A Moesin; FERM, coiled-co 74.5 13 0.00043 30.1 7.7 74 7-89 2-81 (575)
165 3u52_E Phenol hydroxylase comp 74.2 13 0.00044 24.5 6.3 60 24-87 41-107 (119)
166 2kmc_A Fermitin family homolog 72.2 9.3 0.00032 24.5 5.1 68 9-88 19-98 (102)
167 2kl0_A Putative thiamin biosyn 71.4 3.4 0.00012 24.4 2.8 51 25-88 10-60 (73)
168 3qij_A Protein 4.1; cytoskelet 69.7 13 0.00046 27.0 6.3 73 8-88 16-94 (296)
169 1q1o_A Cell division control p 67.6 3 0.0001 26.6 2.0 39 8-49 4-49 (98)
170 3ge3_C Toluene-4-monooxygenase 66.4 20 0.0007 22.1 9.2 73 10-88 4-82 (84)
171 1wgy_A RAP guanine nucleotide 65.8 23 0.0008 22.6 6.5 75 9-91 9-88 (104)
172 2k5p_A THis protein, thiamine- 64.7 5.7 0.0002 23.7 2.9 52 24-87 9-63 (78)
173 2v1y_A Phosphatidylinositol-4, 61.2 16 0.00056 23.5 4.7 35 7-42 17-51 (108)
174 2l05_A Serine/threonine-protei 60.4 29 0.001 21.9 6.6 75 3-88 11-89 (95)
175 3hk0_A Growth factor receptor- 59.2 19 0.00064 26.2 5.3 60 3-67 4-70 (256)
176 2bt6_A Adrenodoxin 1; rutheniu 59.0 12 0.00041 23.0 3.7 29 7-36 4-32 (108)
177 2dhz_A RAP guanine nucleotide 56.3 39 0.0013 22.1 6.0 52 8-62 8-68 (120)
178 4a6q_A Histone deacetylase com 53.8 11 0.00036 25.6 3.0 62 27-92 60-141 (143)
179 2nvu_B Maltose binding protein 52.5 40 0.0014 27.8 6.8 60 24-87 715-789 (805)
180 3hui_A Ferredoxin; cytochrome 51.6 23 0.00079 22.9 4.3 31 5-36 17-47 (126)
181 2lkz_A RNA-binding protein 5; 51.5 31 0.001 20.7 4.7 45 1-57 1-45 (95)
182 2y5c_A Adrenodoxin-like protei 51.1 21 0.00071 22.0 3.9 28 8-36 4-31 (109)
183 1v8c_A MOAD related protein; r 50.6 37 0.0013 23.0 5.4 64 24-97 17-90 (168)
184 2eel_A Cell death activator CI 50.2 26 0.00089 21.8 4.2 51 31-91 28-80 (91)
185 3au4_A Myosin-X; protein-prote 50.0 22 0.00075 28.1 4.7 47 8-57 215-263 (555)
186 1pqs_A Cell division control p 46.7 9.8 0.00034 22.9 1.7 34 24-59 5-43 (77)
187 1j0g_A Hypothetical protein 18 46.3 50 0.0017 20.4 6.4 74 10-90 13-87 (92)
188 2lgx_A Fermitin family homolog 44.9 9.5 0.00032 24.8 1.5 65 9-87 26-100 (112)
189 1f2r_I Inhibitor of caspase-ac 43.9 35 0.0012 21.7 4.1 50 31-90 37-90 (100)
190 2wlb_A ETP1-FD, electron trans 42.3 37 0.0013 20.5 4.0 27 9-36 3-29 (103)
191 3e19_A FEOA; transcriptional r 41.7 29 0.001 19.9 3.3 27 73-100 31-57 (77)
192 1jq4_A Methane monooxygenase c 41.5 26 0.00088 21.0 3.2 28 9-37 4-31 (98)
193 3pvl_A Myosin VIIA isoform 1; 40.9 34 0.0011 28.1 4.6 47 8-57 262-309 (655)
194 3lxf_A Ferredoxin; iron, iron- 40.0 30 0.001 21.2 3.4 25 11-36 2-26 (104)
195 4gmv_A RAS-associated and plec 38.7 48 0.0016 24.4 4.8 68 12-87 34-112 (281)
196 3tca_A Amyloid beta A4 precurs 38.1 51 0.0017 23.0 4.7 37 12-51 37-73 (291)
197 3r8s_T 50S ribosomal protein L 37.9 63 0.0021 20.0 4.6 37 24-62 31-68 (93)
198 2k5l_A FEOA; structure, NESG, 36.9 38 0.0013 19.7 3.3 28 73-100 28-55 (81)
199 2inc_C TOUB protein; DIIRON, 4 36.3 75 0.0025 19.5 10.3 71 12-88 4-81 (83)
200 3eud_A Protein SHQ1; CS domain 35.5 90 0.0031 20.2 5.2 68 4-90 23-94 (115)
201 4gdk_A Ubiquitin-like protein 33.9 82 0.0028 19.2 5.6 53 8-62 4-60 (91)
202 2l66_A SSO7C4, transcriptional 33.5 14 0.00049 20.1 0.9 28 58-90 11-38 (53)
203 1wmh_B Partitioning defective- 33.3 50 0.0017 20.3 3.5 46 12-59 7-54 (86)
204 2h3j_A Hypothetical protein PA 33.2 40 0.0014 19.0 2.9 29 72-100 26-54 (75)
205 3mhx_A Putative ferrous iron t 33.0 45 0.0015 19.5 3.2 29 73-101 31-60 (85)
206 2k4y_A FEOA-like protein; GFT 32.7 47 0.0016 19.6 3.3 28 73-100 31-58 (86)
207 2lx9_A Ferrous iron transport 32.1 56 0.0019 19.3 3.5 28 73-100 26-53 (83)
208 2i1s_A Hypothetical protein; m 30.6 65 0.0022 21.9 4.1 41 10-52 11-51 (188)
209 3tve_T 50S ribosomal protein L 30.4 83 0.0029 19.3 4.2 38 23-62 24-62 (92)
210 1yfb_A Transition state regula 30.3 16 0.00054 20.8 0.7 31 55-90 18-48 (59)
211 1frr_A Ferredoxin I; electron 29.8 48 0.0017 19.4 3.0 25 10-36 2-26 (95)
212 2bb6_A TCII, TC II, transcobal 29.1 2E+02 0.007 22.3 8.8 73 10-89 319-412 (414)
213 1uwm_A Ferredoxin VI, FDVI; el 28.4 59 0.002 19.6 3.3 25 11-36 2-26 (106)
214 1tt5_B Ubiquitin-activating en 28.1 30 0.001 26.9 2.2 61 24-87 344-418 (434)
215 4i1k_A B3 domain-containing tr 27.5 52 0.0018 21.7 3.1 25 73-97 112-136 (146)
216 3cjs_B 50S ribosomal protein L 26.6 66 0.0023 19.0 3.1 22 81-102 50-71 (72)
217 2gcx_A FEOA, ferrous iron tran 26.4 43 0.0015 19.0 2.2 18 73-90 26-43 (75)
218 2r2q_A Gamma-aminobutyric acid 25.7 1.3E+02 0.0043 18.8 5.6 52 7-60 25-82 (110)
219 1xlq_A Putidaredoxin, PDX; [2F 25.7 72 0.0025 19.2 3.3 25 11-36 2-26 (106)
220 2nnz_A Hypothetical protein; b 25.3 30 0.001 23.3 1.5 36 3-40 23-61 (153)
221 2y3a_A Phosphatidylinositol-4, 24.7 97 0.0033 27.2 4.9 35 7-42 49-83 (1092)
222 1t3q_A Quinoline 2-oxidoreduct 24.7 70 0.0024 21.4 3.3 29 8-38 8-36 (168)
223 2k0q_A Putative uncharacterize 24.0 30 0.001 20.8 1.2 14 73-86 7-20 (74)
224 1wxm_A A-RAF proto-oncogene se 24.0 1.3E+02 0.0045 18.4 8.4 68 12-89 10-80 (86)
225 2k5f_A Ferrous iron transport 23.7 79 0.0027 19.6 3.3 28 73-100 27-54 (105)
226 1udx_A The GTP-binding protein 22.5 41 0.0014 25.9 2.0 22 72-98 391-412 (416)
227 1hmj_A RPB5, protein (subunit 22.4 1E+02 0.0034 18.6 3.4 48 31-91 15-62 (78)
228 1fr3_A MOP, molybdate/tungstat 22.4 43 0.0015 18.0 1.6 19 73-91 43-61 (67)
229 3ra3_A P1C; coiled coil domain 22.3 49 0.0017 15.9 1.6 12 31-42 14-25 (28)
230 2zjr_Q 50S ribosomal protein L 22.2 68 0.0023 19.9 2.7 37 24-62 26-63 (95)
231 1b9r_A Protein (terpredoxin); 21.6 54 0.0018 19.7 2.1 25 11-36 2-26 (105)
232 1rm6_C 4-hydroxybenzoyl-COA re 21.2 52 0.0018 22.0 2.1 22 17-39 9-30 (161)
233 3ny5_A Serine/threonine-protei 21.1 1.6E+02 0.0055 18.4 6.8 65 13-88 17-85 (96)
234 1rrb_A RAF-1 RBD, RAF proto-on 20.9 1.5E+02 0.0053 18.9 4.2 67 12-89 21-94 (107)
No 1
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=99.90 E-value=1.2e-23 Score=136.79 Aligned_cols=76 Identities=17% Similarity=0.139 Sum_probs=69.5
Q ss_pred CCCCCcEEEEEEcCCCCCceEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEeCCeecCCCCCCCCCCccccCCCCCCE
Q 034173 4 GEISESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGGN 83 (102)
Q Consensus 4 ~~~~~~i~I~vK~~~~~~~~~l~v~~~~TV~~LK~~Ia~~~~~~ip~~~qrLi~~Gk~L~D~~t~~~~~L~~~~I~~g~t 83 (102)
+..+++|+|+||++.|+.+ .+++.|++||.+||++|++ +.|+||++|||+|+|++|+|+.+ |++|+|++|+|
T Consensus 16 ~~~~~mIqI~Vk~~~Gkk~-~v~v~p~DTI~~LK~~I~~--k~Gip~~qQrLif~Gk~LkD~~T-----L~dY~I~dgst 87 (93)
T 3plu_A 16 PRGSHMIEVVVNDRLGKKV-RVKCLGEDSVGDFKKVLSL--QIGTQPNKIVLQKGGSVLKDHIS-----LEDYEVHDQTN 87 (93)
T ss_dssp ----CEEEEEEECTTSCEE-EEEEETTSBHHHHHHHHHH--HHTCCGGGEEEEETTEECCTTSB-----TGGGTCCTTCE
T ss_pred CCCCceEEEEEECCCCCEE-EEEECCcCHHHHHHHHHHH--HhCCCHHHEEEEeCCEEccCcCC-----HHHcCCCCCCE
Confidence 4457889999999999999 9999999999999999999 99999999999999999999888 99999999999
Q ss_pred EEEE
Q 034173 84 INIS 87 (102)
Q Consensus 84 i~l~ 87 (102)
|+|-
T Consensus 88 LhL~ 91 (93)
T 3plu_A 88 LELY 91 (93)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9974
No 2
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=99.89 E-value=8.4e-23 Score=126.50 Aligned_cols=76 Identities=18% Similarity=0.154 Sum_probs=71.5
Q ss_pred CcEEEEEEcCCCCCceEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEeCCeecCCCCCCCCCCccccCCCCCCEEEEE
Q 034173 8 ESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGGNINIS 87 (102)
Q Consensus 8 ~~i~I~vK~~~~~~~~~l~v~~~~TV~~LK~~Ia~~~~~~ip~~~qrLi~~Gk~L~D~~t~~~~~L~~~~I~~g~ti~l~ 87 (102)
.+|+|+||+++|+.+ .++|++++||.+||++|++ ..++|+++|||+|+|+.|+|+.+ |++|+|++|++||++
T Consensus 3 ~~m~i~Vk~~~g~~~-~~~v~~~~tV~~lK~~i~~--~~gip~~~qrL~~~G~~L~d~~t-----L~~~~i~~~~~l~l~ 74 (79)
T 3phx_B 3 EPLSILVRNNKGRSS-TYEVRLTQTVAHLKQQVSG--LEGVQDDLFWLTFEGKPLEDQLP-----LGEYGLKPLSTVFMN 74 (79)
T ss_dssp CCEEEEEECTTSCEE-EEEECTTSBHHHHHHHHHH--HHTCCGGGEEEEETTEECCTTSB-----GGGGTCCTTCEEEEE
T ss_pred CCEEEEEEeCCCCEE-EEEECCcChHHHHHHHHHh--hcCCCHHHEEEEECCEECCCCCc-----HHHCCCCCCCEEEEE
Confidence 569999999999988 8999999999999999999 99999999999999999988888 999999999999999
Q ss_pred EecC
Q 034173 88 LFNL 91 (102)
Q Consensus 88 ~~~~ 91 (102)
++-+
T Consensus 75 ~rl~ 78 (79)
T 3phx_B 75 LRLR 78 (79)
T ss_dssp ECCB
T ss_pred EecC
Confidence 8743
No 3
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=99.88 E-value=3e-22 Score=130.90 Aligned_cols=77 Identities=18% Similarity=0.287 Sum_probs=69.9
Q ss_pred CCcEEEEEEcCCCCCceEE--EecCCCcHHHHHHHH-HhccCCCCCCCceEEEeCCeecCCCCCCCCCCccccCC-CCCC
Q 034173 7 SESVEITVKTIGPAPPSRL--SVSSPIKVRDLRKLI-ATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQL-SNGG 82 (102)
Q Consensus 7 ~~~i~I~vK~~~~~~~~~l--~v~~~~TV~~LK~~I-a~~~~~~ip~~~qrLi~~Gk~L~D~~t~~~~~L~~~~I-~~g~ 82 (102)
+++|+|+||+++|+.+ .+ +|++++||.+||++| ++ ..++|+++|||+|+|+.|+|+.+ |++|+| ++|+
T Consensus 17 ~~~m~I~VKtl~g~~~-~i~v~v~~~~TV~~lK~~I~~~--~~gip~~~QrLi~~Gk~L~D~~t-----L~dy~I~~~g~ 88 (98)
T 4a20_A 17 NAAVHLTLKKIQAPKF-SIEHDFSPSDTILQIKQHLISE--EKASHISEIKLLLKGKVLHDNLF-----LSDLKVTPANS 88 (98)
T ss_dssp -CCEEEEEEECSSSCE-EEEEEECTTCBHHHHHHHHHHT--TSCSCGGGEEEEETTEEECTTCB-----GGGSCCBTTBC
T ss_pred CCCEEEEEEcCCCCEE-EEEEecCCCChHHHHHHHHHHH--hcCCChhhEEEEECCEECcCcCC-----HHHcCcCCCCC
Confidence 4679999999999976 55 566999999999999 77 78999999999999999988888 999999 9999
Q ss_pred EEEEEEecC
Q 034173 83 NINISLFNL 91 (102)
Q Consensus 83 ti~l~~~~~ 91 (102)
+|++++..|
T Consensus 89 ti~lmvskp 97 (98)
T 4a20_A 89 TITVMIKPN 97 (98)
T ss_dssp EEEEEECCC
T ss_pred EEEEEEeCC
Confidence 999999875
No 4
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=99.88 E-value=1.5e-22 Score=127.83 Aligned_cols=77 Identities=26% Similarity=0.439 Sum_probs=70.0
Q ss_pred CCCCCcEEEEEEcCCCCCceEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEeCCeecCCCCCCCCCCccccCCCCCCE
Q 034173 4 GEISESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGGN 83 (102)
Q Consensus 4 ~~~~~~i~I~vK~~~~~~~~~l~v~~~~TV~~LK~~Ia~~~~~~ip~~~qrLi~~Gk~L~D~~t~~~~~L~~~~I~~g~t 83 (102)
.+.+..|+|+||+.+|+.+ .++|++++||.+||++|++ ..++|+++|||+|+|+.|+|+.+ |++||| +|++
T Consensus 12 ~~~~~~m~i~Vk~~~g~~~-~~~v~~~~tV~~lK~~i~~--~~gip~~~qrLi~~Gk~L~D~~t-----L~~~~i-~g~~ 82 (88)
T 4eew_A 12 VEEPDSLEVLVKTLDSQTR-TFIVGAQMNVKEFKEHIAA--SVSIPSEKQRLIYQGRVLQDDKK-----LQEYNV-GGKV 82 (88)
T ss_dssp ---CCEEEEEEEETTSCEE-EEEEETTCBHHHHHHHHHH--HHTCCGGGEEEEETTEECCTTSB-----GGGGTC-TTEE
T ss_pred ecCCCeEEEEEEcCCCCEE-EEEECCCCCHHHHHHHHHH--HhCCCHHHEEEEECCEECCCCCc-----HHHcCC-CCcE
Confidence 3456789999999999988 8999999999999999999 89999999999999999988888 999999 8999
Q ss_pred EEEEEe
Q 034173 84 INISLF 89 (102)
Q Consensus 84 i~l~~~ 89 (102)
||+++|
T Consensus 83 i~lv~R 88 (88)
T 4eew_A 83 IHLVER 88 (88)
T ss_dssp EEEEEC
T ss_pred EEEEEC
Confidence 999875
No 5
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=99.87 E-value=3.8e-22 Score=127.10 Aligned_cols=77 Identities=21% Similarity=0.309 Sum_probs=71.9
Q ss_pred CCCcEEEEEEcCCCCCceEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEeCCeecCCCCCCCCCCccccCCCCCCEEE
Q 034173 6 ISESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGGNIN 85 (102)
Q Consensus 6 ~~~~i~I~vK~~~~~~~~~l~v~~~~TV~~LK~~Ia~~~~~~ip~~~qrLi~~Gk~L~D~~t~~~~~L~~~~I~~g~ti~ 85 (102)
.+..|+|+||+.+|+.+ .++|++++||.+||++|++ ..|+|+++|||+|+|+.|+|+.+ |++|||++|++||
T Consensus 14 ~~~~m~i~Vk~~~g~~~-~l~v~~~~TV~~LK~~I~~--~~gip~~~qrL~~~Gk~L~D~~t-----L~~~gi~~g~~i~ 85 (91)
T 3v6c_B 14 PRGSMQIFVNTLTGTHI-TLEVEPSDTIENVKAKIQD--KEGIPPDQQRLIFAGKQLEDGRT-----LSDYNIQKESTLH 85 (91)
T ss_dssp CCCSEEEEEECTTSCEE-EEEECTTCBHHHHHHHHHH--HHCCCGGGCEEEETTEECCTTCB-----TGGGTCCTTCEEE
T ss_pred CCCeEEEEEEeCCCCEE-EEEECCCCCHHHHHHHHHh--hhCCChhhEEEEECCeECCCcCc-----HHHCCCCCCCEEE
Confidence 35679999999999988 8999999999999999999 99999999999999999988888 9999999999999
Q ss_pred EEEec
Q 034173 86 ISLFN 90 (102)
Q Consensus 86 l~~~~ 90 (102)
++++-
T Consensus 86 l~~rl 90 (91)
T 3v6c_B 86 LVLRL 90 (91)
T ss_dssp EECCC
T ss_pred EEEec
Confidence 98863
No 6
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=99.87 E-value=3.8e-22 Score=126.39 Aligned_cols=79 Identities=24% Similarity=0.416 Sum_probs=72.9
Q ss_pred CCCcEEEEEEcCCCCCceEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEeCCeecCCCCCCCCCCccccCCCCCCEEE
Q 034173 6 ISESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGGNIN 85 (102)
Q Consensus 6 ~~~~i~I~vK~~~~~~~~~l~v~~~~TV~~LK~~Ia~~~~~~ip~~~qrLi~~Gk~L~D~~t~~~~~L~~~~I~~g~ti~ 85 (102)
++.+|+|+||+++|+.+ .++|++++||.+||++|++ +.++|+++|||+|+|+.|+|+.+ |++|+| +|++||
T Consensus 2 ~~~~m~i~Vk~~~g~~~-~~~v~~~~tV~~lK~~i~~--~~gip~~~qrLi~~Gk~L~d~~t-----L~~~~i-~g~~i~ 72 (90)
T 4dwf_A 2 EPDSLEVLVKTLDSQTR-TFIVGAQMNVKEFKEHIAA--SVSIPSEKQRLIYQGRVLQDDKK-----LQEYNV-GGKVIH 72 (90)
T ss_dssp CCCEEEEEEEETTCCEE-EEEEETTCBHHHHHHHHHH--HHTCCGGGEEEEETTEECCTTSB-----GGGGTC-TTEEEE
T ss_pred CCcEEEEEEEcCCCCEE-EEEECCCCCHHHHHHHHHH--HhCCCHHHEEEEECCeECCCCCC-----HHHcCC-CCcEEE
Confidence 45789999999999988 8999999999999999999 89999999999999999988888 999999 899999
Q ss_pred EEEecCCC
Q 034173 86 ISLFNLDD 93 (102)
Q Consensus 86 l~~~~~~~ 93 (102)
|+++.+..
T Consensus 73 l~~~~~~~ 80 (90)
T 4dwf_A 73 LVERAPPQ 80 (90)
T ss_dssp EEECCCC-
T ss_pred EEecCCCC
Confidence 99987643
No 7
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=99.87 E-value=9.9e-22 Score=122.79 Aligned_cols=77 Identities=18% Similarity=0.324 Sum_probs=70.1
Q ss_pred CCcEEEEEEcCCCCCceEEEecCCCcHHHHHHHHHhccC---CCCCCCceEEEeCCeecCCCCCCCCCCccccCCCCCCE
Q 034173 7 SESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSA---NHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGGN 83 (102)
Q Consensus 7 ~~~i~I~vK~~~~~~~~~l~v~~~~TV~~LK~~Ia~~~~---~~ip~~~qrLi~~Gk~L~D~~t~~~~~L~~~~I~~g~t 83 (102)
+.+|+|+||+.+|+.+ .++|++++||.+||++|++ . .++|+++|||+|+|+.|+|+.+ |++|+|++|++
T Consensus 3 ~~~m~i~vk~~~g~~~-~~~v~~~~TV~~lK~~i~~--~~~~~gip~~~qrLi~~Gk~L~D~~t-----L~~~~i~~g~~ 74 (85)
T 2wyq_A 3 PMAVTITLKTLQQQTF-KIRMEPDETVKVLKEKIEA--EKGRDAFPVAGQKLIYAGKILSDDVP-----IRDYRIDEKNF 74 (85)
T ss_dssp -CCEEEEEEETTSCEE-EEEECTTSBHHHHHHHHHH--HHCTTTCCGGGEEEEETTEECCTTSB-----GGGGCCCTTSE
T ss_pred CceEEEEEEECCCCEE-EEEECCCCCHHHHHHHHHh--hccccCCCHHHeEEEECCEECcCCCC-----HHHcCCCCCCE
Confidence 4579999999999888 8999999999999999998 6 8999999999999999988888 99999999999
Q ss_pred EEEEEecC
Q 034173 84 INISLFNL 91 (102)
Q Consensus 84 i~l~~~~~ 91 (102)
|||+++++
T Consensus 75 i~l~~~~~ 82 (85)
T 2wyq_A 75 VVVMVTKT 82 (85)
T ss_dssp EEEEEC--
T ss_pred EEEEEcCC
Confidence 99999876
No 8
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.86 E-value=4e-22 Score=131.13 Aligned_cols=72 Identities=17% Similarity=0.178 Sum_probs=68.4
Q ss_pred CcEEEEEEcCCCCCceEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEeCCeecCCCCCCCCCCccccCCCCCCEEEEE
Q 034173 8 ESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGGNINIS 87 (102)
Q Consensus 8 ~~i~I~vK~~~~~~~~~l~v~~~~TV~~LK~~Ia~~~~~~ip~~~qrLi~~Gk~L~D~~t~~~~~L~~~~I~~g~ti~l~ 87 (102)
++|+|+||++.|+.+ .++|++++||.+||++|++ +.|+|+++|||+|.|++|+|+.+ |++|+|++|+||+|.
T Consensus 27 ~mm~I~VKtl~Gk~i-~lev~p~dTV~~lK~~Ia~--k~Gip~~qQrLi~~Gk~L~D~~T-----L~dygI~~gstlhL~ 98 (100)
T 1uh6_A 27 TMIEVVCNDRLGKKV-RVKCNTDDTIGDLKKLIAA--QTGTRWNKIVLKKWYTIFKDHVS-----LGDYEIHDGMNLELY 98 (100)
T ss_dssp CEEEEEEECSSSSCE-EEEEETTSBHHHHHHHHHH--HHCCCGGGCEEEETTEECCSSCB-----HHHHTCCTTEEEEEE
T ss_pred CeEEEEEECCCCCEE-EEEeCCCCcHHHHHHHHHH--HhCCCHHHEEEEECCEECCCCCC-----HHHcCCCCCCEEEEE
Confidence 459999999999888 8999999999999999999 99999999999999999988888 999999999999985
No 9
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=99.86 E-value=6.2e-22 Score=124.25 Aligned_cols=77 Identities=19% Similarity=0.339 Sum_probs=72.3
Q ss_pred CCcEEEEEEcCCCCCceEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEeCCeecCCCCCCCCCCccccCCCCCCEEEE
Q 034173 7 SESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGGNINI 86 (102)
Q Consensus 7 ~~~i~I~vK~~~~~~~~~l~v~~~~TV~~LK~~Ia~~~~~~ip~~~qrLi~~Gk~L~D~~t~~~~~L~~~~I~~g~ti~l 86 (102)
..+|+|+||+.+|+.+ .++|++++||.+||++|++ ..++|+++|||+|+|+.|+|+.+ |++|+|++|++||+
T Consensus 10 ~~~m~i~vk~~~g~~~-~~~v~~~~tV~~lK~~i~~--~~gip~~~qrL~~~G~~L~d~~t-----L~~~~i~~~~~i~l 81 (88)
T 3dbh_I 10 GGSMLIKVKTLTGKEI-EIDIEPTDKVERIKERVEE--KEGIPPQQQRLIYSGKQMNDEKT-----AADYKILGGSVLHL 81 (88)
T ss_dssp CCCEEEEEECTTSCEE-EEEECTTCBHHHHHHHHHH--HHCCCGGGCCEEETTEECCTTSB-----GGGGTCCTTCEEEE
T ss_pred CCcEEEEEEcCCCCEE-EEEECCCCCHHHHHHHHHH--HHCcCHHHEEEEECCeECCCCCc-----HHHcCCCCCCEEEE
Confidence 4579999999999988 8999999999999999999 89999999999999999988888 99999999999999
Q ss_pred EEecC
Q 034173 87 SLFNL 91 (102)
Q Consensus 87 ~~~~~ 91 (102)
+++-.
T Consensus 82 ~~rl~ 86 (88)
T 3dbh_I 82 VLRLR 86 (88)
T ss_dssp CCCCC
T ss_pred EEeCC
Confidence 98765
No 10
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.86 E-value=1.2e-21 Score=120.79 Aligned_cols=76 Identities=24% Similarity=0.297 Sum_probs=70.4
Q ss_pred cEEEEEEcCCCCCceEEE-ecCCCcHHHHHHHHHhccCCCCCCCceEEEeCCeecCCCCCCCCCCccccCCCCCCEEEEE
Q 034173 9 SVEITVKTIGPAPPSRLS-VSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGGNINIS 87 (102)
Q Consensus 9 ~i~I~vK~~~~~~~~~l~-v~~~~TV~~LK~~Ia~~~~~~ip~~~qrLi~~Gk~L~D~~t~~~~~L~~~~I~~g~ti~l~ 87 (102)
.|+|+||+++|+.+..++ |++++||.+||++|++ ..++|+++|||+|+|+.|+|+.+ |++|+|++|++||++
T Consensus 2 ~m~i~Vk~~~g~~~~~l~~v~~~~tv~~lK~~i~~--~~gip~~~qrL~~~g~~L~d~~t-----L~~~~i~~g~~i~l~ 74 (78)
T 2faz_A 2 SMWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQE--LFHVEPGLQRLFYRGKQMEDGHT-----LFDYEVRLNDTIQLL 74 (78)
T ss_dssp CEEEEEEETTSSCEEEEEEECTTCBHHHHHHHHHH--HHCCCGGGEEEEETTEECCTTCB-----TTTTTCCTTCEEEEE
T ss_pred cEEEEEEECCCCEEEEEeccCCCCCHHHHHHHHHH--HHCcChhhEEEEECCEECCCCCC-----HHHcCCCCCCEEEEE
Confidence 599999999998844788 9999999999999999 99999999999999999988888 999999999999999
Q ss_pred EecC
Q 034173 88 LFNL 91 (102)
Q Consensus 88 ~~~~ 91 (102)
++.+
T Consensus 75 ~r~~ 78 (78)
T 2faz_A 75 VRQS 78 (78)
T ss_dssp ECCC
T ss_pred EeCC
Confidence 8753
No 11
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.86 E-value=4.7e-22 Score=125.99 Aligned_cols=74 Identities=16% Similarity=0.262 Sum_probs=70.0
Q ss_pred cEEEEEEcCCCCCceEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEeCCee-cCCCCCCCCCCccccCCCCCCEEEEE
Q 034173 9 SVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKV-LDDTQDDDDRDDVYLQLSNGGNINIS 87 (102)
Q Consensus 9 ~i~I~vK~~~~~~~~~l~v~~~~TV~~LK~~Ia~~~~~~ip~~~qrLi~~Gk~-L~D~~t~~~~~L~~~~I~~g~ti~l~ 87 (102)
-|+|+||+.+|+.+ .++|++++||.+||++|++ ..|+|+++|||+|+|+. |+|+.+ |++|+|++|++|+|+
T Consensus 10 ~~~i~vk~l~g~~~-~l~v~~~~TV~~LK~~I~~--~~gip~~~QrLi~~Gk~lL~D~~t-----L~~y~I~~gs~i~lv 81 (84)
T 2kk8_A 10 HMKFLVENLNGSSF-ELEVDYRDTLLVVKQKIER--SQHIPVSKQTLIVDGIVILREDLT-----VEQCQIVPTSDIQLE 81 (84)
T ss_dssp CEEEEEEETTSCEE-EEEECTTSBHHHHHHHHHH--HHTCCGGGEEEEETTEECCCSSSB-----HHHHTCCTTSCEEEE
T ss_pred ceEEEEEecCCcEE-EEEECCCChHHHHHHHHHH--HHCcChHHEEEEECCEEecCCcCC-----HHHcCCCCCCEEEEE
Confidence 49999999999988 8999999999999999999 99999999999999999 988878 999999999999998
Q ss_pred Eec
Q 034173 88 LFN 90 (102)
Q Consensus 88 ~~~ 90 (102)
+++
T Consensus 82 ~~p 84 (84)
T 2kk8_A 82 VSS 84 (84)
T ss_dssp ECC
T ss_pred EcC
Confidence 863
No 12
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=99.86 E-value=5.2e-22 Score=127.25 Aligned_cols=75 Identities=17% Similarity=0.261 Sum_probs=68.5
Q ss_pred cEEEEEEcCCCCCceEEEec--CCCcHHHHHHHH-HhccCCCCCCCceEEEeCCeecCCCCCCCCCCccccCC-CCCCEE
Q 034173 9 SVEITVKTIGPAPPSRLSVS--SPIKVRDLRKLI-ATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQL-SNGGNI 84 (102)
Q Consensus 9 ~i~I~vK~~~~~~~~~l~v~--~~~TV~~LK~~I-a~~~~~~ip~~~qrLi~~Gk~L~D~~t~~~~~L~~~~I-~~g~ti 84 (102)
+|+|+||+++|+.+ +++|+ +++||.+||++| ++ ..|+|+++|||||+||+|+|+.+ |++|+| .+|.+|
T Consensus 1 mmqI~VKtl~g~~~-~i~v~v~~~~TV~~lK~~I~~~--~~gip~~~QrLi~~Gk~L~D~~t-----L~~y~I~~~~stl 72 (87)
T 2lxa_A 1 MVHLTLKKIQAPKF-SIEHDFSPSDTILQIKQHLISE--EKASHISEIKLLLKGKVLHDNLF-----LSDLKVTPANSTI 72 (87)
T ss_dssp CCEEEEEECSSSCE-ECCEECCTTCBHHHHHHHHHHT--TSCSSSTTEEEEETTEECCTTCB-----HHHHCCCGGGCEE
T ss_pred CEEEEEEcCCCCEE-EEEEcCCCCCcHHHHHHHHHHH--hcCCChHHEEEEECCEECcCcCC-----HHHcCCCCCCCEE
Confidence 38999999999987 77655 999999999999 88 88999999999999999998888 999999 699999
Q ss_pred EEEEecC
Q 034173 85 NISLFNL 91 (102)
Q Consensus 85 ~l~~~~~ 91 (102)
+|++.+.
T Consensus 73 ~v~~~~~ 79 (87)
T 2lxa_A 73 TVMIKPN 79 (87)
T ss_dssp EEEECCC
T ss_pred EEEcCCC
Confidence 9998763
No 13
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=99.86 E-value=7.4e-22 Score=125.45 Aligned_cols=76 Identities=18% Similarity=0.340 Sum_probs=70.6
Q ss_pred EEEEEEcCCCCCceEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEeCCeecCCCCCCCCCCccccCCCCCCEEEEEEe
Q 034173 10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGGNINISLF 89 (102)
Q Consensus 10 i~I~vK~~~~~~~~~l~v~~~~TV~~LK~~Ia~~~~~~ip~~~qrLi~~Gk~L~D~~t~~~~~L~~~~I~~g~ti~l~~~ 89 (102)
|+|+||+.+|+.+ .++|++++||.+||++|++ ..++|+++|||+|+|+.|+|+.+ |++|+|++|++|+++++
T Consensus 1 M~I~Vk~~~g~~~-~l~v~~~~TV~~LK~~I~~--~~gip~~~qrLi~~Gk~L~D~~t-----L~~~~i~~g~~l~l~~r 72 (88)
T 4fbj_B 1 MLIKVKTLTGKEI-EIDIEPTDKVERIKERVEE--KEGIPPQQQRLIYSGKQMNDEKT-----AADYKILGGSVLHLVLA 72 (88)
T ss_dssp CEEEEEETTCCEE-EEECCTTCBHHHHHHHHHH--HHCCCGGGCEEEETTEECCTTSB-----TTTTTCCTTCEEEEECB
T ss_pred CEEEEEcCCCCEE-EEEECCCCCHHHHHHHHHH--HHCcChhHEEEEECCeECCCCCc-----HHHcCCCCCCEEEEEEE
Confidence 7899999999988 8999999999999999999 99999999999999999988888 99999999999999998
Q ss_pred cCCC
Q 034173 90 NLDD 93 (102)
Q Consensus 90 ~~~~ 93 (102)
-...
T Consensus 73 l~Gg 76 (88)
T 4fbj_B 73 LRGG 76 (88)
T ss_dssp CC--
T ss_pred CCCC
Confidence 7643
No 14
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.86 E-value=1.1e-21 Score=125.51 Aligned_cols=81 Identities=21% Similarity=0.143 Sum_probs=71.1
Q ss_pred CCCCcEEEEEEcCCCCCc-eEEEecCCCcHHHHHHHHHhccCC--CCCCCceEEEeCCeecCCCCCCCCCCcccc--CCC
Q 034173 5 EISESVEITVKTIGPAPP-SRLSVSSPIKVRDLRKLIATSSAN--HLPIENLRLVFRGKVLDDTQDDDDRDDVYL--QLS 79 (102)
Q Consensus 5 ~~~~~i~I~vK~~~~~~~-~~l~v~~~~TV~~LK~~Ia~~~~~--~ip~~~qrLi~~Gk~L~D~~t~~~~~L~~~--~I~ 79 (102)
+++..|+|+||+++++.. ..+++++++||.+||++|++ .. ++|+++|||+|+|+.|+|+.+ |++| +|+
T Consensus 3 ~~~~~m~i~Vk~~~~~~~~~~v~v~~~~TV~~lK~~I~~--~~~~~i~~~~QrLi~~Gk~L~D~~t-----L~~~~~~i~ 75 (93)
T 1wgd_A 3 SGSSGVTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSR--VYPERPRPEDQRLIYSGKLLLDHQC-----LRDLLPKQE 75 (93)
T ss_dssp CCSCCCEEEEECSSSSCCCEEEECCTTSCHHHHHHHHHH--HSTTCCCTTTCEEEETTEECCSSSC-----HHHHSCSSS
T ss_pred CCCcEEEEEEEeCCCCeEEEEEecCCCCcHHHHHHHHHH--HhcCCCChHHeEEEECCEECcCcCC-----HHHHhcCCC
Confidence 445679999999998842 26667799999999999998 76 999999999999999988888 9999 999
Q ss_pred CCCEEEEEEecCC
Q 034173 80 NGGNINISLFNLD 92 (102)
Q Consensus 80 ~g~ti~l~~~~~~ 92 (102)
+|++|||+++...
T Consensus 76 ~~~~i~lv~~~~g 88 (93)
T 1wgd_A 76 KRHVLHLVCNVKS 88 (93)
T ss_dssp CSEEEEEECCCCC
T ss_pred CCCEEEEEeCCCC
Confidence 9999999987664
No 15
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.86 E-value=1.5e-21 Score=120.61 Aligned_cols=77 Identities=23% Similarity=0.360 Sum_probs=71.4
Q ss_pred CCCcEEEEEEcCCCCCceEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEeCCeecCCCCCCCCCCccccCCCCCCEEE
Q 034173 6 ISESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGGNIN 85 (102)
Q Consensus 6 ~~~~i~I~vK~~~~~~~~~l~v~~~~TV~~LK~~Ia~~~~~~ip~~~qrLi~~Gk~L~D~~t~~~~~L~~~~I~~g~ti~ 85 (102)
.++.|+|+||+.+|+.+ .+++++++||.+||++|++ ..++|+++|||+|+|+.|+|+.+ |++|||++|++||
T Consensus 4 ~~~~m~i~vk~~~g~~~-~~~v~~~~tV~~LK~~i~~--~~~i~~~~qrL~~~gk~L~d~~t-----L~~~~i~~g~~i~ 75 (81)
T 2dzi_A 4 GSSGMQLTVKALQGREC-SLQVPEDELVSTLKQLVSE--KLNVPVRQQRLLFKGKALADGKR-----LSDYSIGPNSKLN 75 (81)
T ss_dssp SSSSEEEEEEETTSCEE-EEEECSSCBHHHHHHHHHH--HTCCCTTTCEEEETTEECCTTSB-----GGGGTCCSSBCCE
T ss_pred CCCcEEEEEEeCCCCEE-EEEECCCCcHHHHHHHHHH--HHCcCHHHEEEEECCeECCCCCc-----HHHcCCCCCCEEE
Confidence 35679999999999877 8999999999999999999 99999999999999999988877 9999999999999
Q ss_pred EEEec
Q 034173 86 ISLFN 90 (102)
Q Consensus 86 l~~~~ 90 (102)
++++.
T Consensus 76 l~~~~ 80 (81)
T 2dzi_A 76 LVVKP 80 (81)
T ss_dssp EECCC
T ss_pred EEEeC
Confidence 98875
No 16
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=99.86 E-value=2e-21 Score=118.27 Aligned_cols=75 Identities=19% Similarity=0.344 Sum_probs=70.0
Q ss_pred EEEEEEcCCCCCceEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEeCCeecCCCCCCCCCCccccCCCCCCEEEEEEe
Q 034173 10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGGNINISLF 89 (102)
Q Consensus 10 i~I~vK~~~~~~~~~l~v~~~~TV~~LK~~Ia~~~~~~ip~~~qrLi~~Gk~L~D~~t~~~~~L~~~~I~~g~ti~l~~~ 89 (102)
|+|+||+++|+.+ .+++++++||.+||++|++ ..++|+++|||+|+|+.|+|+.+ |++|+|++|++||++++
T Consensus 1 M~i~vk~~~g~~~-~~~v~~~~tv~~lK~~i~~--~~~i~~~~q~L~~~g~~L~d~~t-----L~~~~i~~g~~i~l~~~ 72 (76)
T 1ndd_A 1 MLIKVKTLTGKEI-EIDIEPTDKVERIKERVEE--KEGIPPQQQRLIYSGKQMNDEKT-----AADYKILGGSVLHLVLA 72 (76)
T ss_dssp CEEEEECTTSCEE-EEECCTTCBHHHHHHHHHH--HHCCCGGGEEEEETTEECCTTSB-----GGGGTCCTTCEEEEEEC
T ss_pred CEEEEECCCCCEE-EEEECCCChHHHHHHHHHH--HHCcChHHEEEEECCEECCCCCc-----HHHcCCCCCCEEEEEEe
Confidence 7899999999887 8999999999999999999 99999999999999999988888 99999999999999988
Q ss_pred cCC
Q 034173 90 NLD 92 (102)
Q Consensus 90 ~~~ 92 (102)
-+.
T Consensus 73 ~~G 75 (76)
T 1ndd_A 73 LRG 75 (76)
T ss_dssp CC-
T ss_pred CCC
Confidence 653
No 17
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=99.86 E-value=2e-21 Score=120.85 Aligned_cols=77 Identities=21% Similarity=0.280 Sum_probs=71.9
Q ss_pred CcEEEEEEcCCCCCceEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEeCCeecCCCCCCCCCCccccCCCCCCEEEEE
Q 034173 8 ESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGGNINIS 87 (102)
Q Consensus 8 ~~i~I~vK~~~~~~~~~l~v~~~~TV~~LK~~Ia~~~~~~ip~~~qrLi~~Gk~L~D~~t~~~~~L~~~~I~~g~ti~l~ 87 (102)
.+|+|+||+.+|+.+ .+++++++||.+||++|++ ..++|+++|||+|+|+.|+|+.+ |++|+|++|++|+++
T Consensus 2 s~m~i~vk~~~g~~~-~~~v~~~~tV~~lK~~i~~--~~~i~~~~qrL~~~g~~L~d~~t-----L~~~~i~~~~~l~l~ 73 (85)
T 3mtn_B 2 SHMQIFVKTLTGKTI-TLEVEPSDTIENVKAKIQD--KEGIPPDQQRLIFAGKQLEDGRT-----LSDYNIQKWSTLFLL 73 (85)
T ss_dssp -CEEEEEECTTSCEE-EEEECTTCBHHHHHHHHHH--HHCCCGGGCEEEETTEECCTTSB-----TGGGTCCTTCEEEEE
T ss_pred CeEEEEEEcCCCCEE-EEEECCCCCHHHHHHHHHH--HHCcChHHEEEEECCEECCCCCC-----HHHcCCCCCCEEEEE
Confidence 469999999999888 8999999999999999999 99999999999999999988888 999999999999999
Q ss_pred EecCC
Q 034173 88 LFNLD 92 (102)
Q Consensus 88 ~~~~~ 92 (102)
++.+.
T Consensus 74 ~r~~G 78 (85)
T 3mtn_B 74 LRLRG 78 (85)
T ss_dssp CCCCC
T ss_pred EECcC
Confidence 98764
No 18
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.86 E-value=2.7e-21 Score=124.38 Aligned_cols=76 Identities=16% Similarity=0.366 Sum_probs=70.9
Q ss_pred EEEEEEcCCCCCceEEEecCCCcHHHHHHHHHhccC---CCCCCCceEEEeCCeecCCCCCCCCCCccccCCCCCCEEEE
Q 034173 10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSA---NHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGGNINI 86 (102)
Q Consensus 10 i~I~vK~~~~~~~~~l~v~~~~TV~~LK~~Ia~~~~---~~ip~~~qrLi~~Gk~L~D~~t~~~~~L~~~~I~~g~ti~l 86 (102)
|+|+||+++|+.+ .++|++++||.+||++|++ . .++|+++|||+|+|+.|+|+.+ |++|||++|++|+|
T Consensus 1 M~I~Vk~~~g~~~-~~~v~~~~TV~~LK~~I~~--~~~~~gip~~~qrLi~~Gk~L~D~~t-----L~~ygI~~g~~i~l 72 (95)
T 1uel_A 1 MQVTLKTLQQQTF-KIDIDPEETVKALKEKIES--EKGKDAFPVAGQKLIYAGKILNDDTA-----LKEYKIDEKNFVVV 72 (95)
T ss_dssp CEEEEEETTCCEE-EEECCTTSBHHHHHHHHHH--HHCTTTCCTTTEEEEETTEECCTTSB-----GGGGTCCSSSEEEE
T ss_pred CEEEEEeCCCCEE-EEEECCCCHHHHHHHHHHh--hcccCCCChhhEEEEECCEECCCcCc-----HHHCCCCCCCEEEE
Confidence 7899999999888 8999999999999999998 7 8999999999999999988888 99999999999999
Q ss_pred EEecCCC
Q 034173 87 SLFNLDD 93 (102)
Q Consensus 87 ~~~~~~~ 93 (102)
+++.+..
T Consensus 73 ~~~~~~~ 79 (95)
T 1uel_A 73 MVTKPKA 79 (95)
T ss_dssp EESSCCC
T ss_pred EEeCCCC
Confidence 9987643
No 19
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=99.86 E-value=1.2e-21 Score=124.40 Aligned_cols=77 Identities=18% Similarity=0.153 Sum_probs=70.2
Q ss_pred CcEEEEEEcCCCCCceEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEeCCeecCCCCCCCCCCccccCCCCCCEEEEE
Q 034173 8 ESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGGNINIS 87 (102)
Q Consensus 8 ~~i~I~vK~~~~~~~~~l~v~~~~TV~~LK~~Ia~~~~~~ip~~~qrLi~~Gk~L~D~~t~~~~~L~~~~I~~g~ti~l~ 87 (102)
.+|+|+||+++|+.+ .++|++++||.+||++|++ ..++|+++|||+|+|+.|+|+.+ |++|+|++|++|+|+
T Consensus 3 ~~m~I~Vk~~~g~~~-~~~v~~~~TV~~LK~~I~~--~~gip~~~qrL~~~Gk~L~D~~t-----L~~~~I~~g~~i~l~ 74 (88)
T 2hj8_A 3 EPLSILVRNNKGRSS-TYEVRLTQTVAHLKQQVSG--LEGVQDDLFWLTFEGKPLEDQLP-----LGEYGLKPLSTVFMN 74 (88)
T ss_dssp CEEEEEEEETTSCEE-EEEEESSSBHHHHHHHHHH--HTCSCTTTEEEESSSSCCCTTSB-----HHHHHCSTTCEEEEE
T ss_pred ccEEEEEECCCCCEE-EEEECCCCcHHHHHHHHHH--HhCCChhHEEEEECCEECCCCCc-----HHHcCCCCCCEEEEE
Confidence 369999999999887 8999999999999999999 99999999999999999988888 999999999999999
Q ss_pred EecCC
Q 034173 88 LFNLD 92 (102)
Q Consensus 88 ~~~~~ 92 (102)
++.+.
T Consensus 75 ~~~~g 79 (88)
T 2hj8_A 75 LRLRG 79 (88)
T ss_dssp EC---
T ss_pred EEcCC
Confidence 98764
No 20
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.85 E-value=1.2e-21 Score=122.05 Aligned_cols=77 Identities=22% Similarity=0.289 Sum_probs=70.7
Q ss_pred CcEEEEEEcCCCCCceEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEeCCeecCCCCCCCCCCccccCCCCCCEEEEE
Q 034173 8 ESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGGNINIS 87 (102)
Q Consensus 8 ~~i~I~vK~~~~~~~~~l~v~~~~TV~~LK~~Ia~~~~~~ip~~~qrLi~~Gk~L~D~~t~~~~~L~~~~I~~g~ti~l~ 87 (102)
.+|+|+||+.+|+.+ .+++++++||.+||++|++ ..++|+++|||+|+|+.|+|+.+ |++|+|++|++|+++
T Consensus 2 s~m~i~vk~~~g~~~-~~~v~~~~tV~~lK~~i~~--~~~ip~~~qrL~~~g~~L~d~~t-----L~~~~i~~~~~i~l~ 73 (85)
T 3n3k_B 2 SHMRIVVKTLMGRTI-ILEVEPSDTIENVKAKIQD--KEGIPPDQQRLIFAGKQLEDGRT-----LSDYNIHNHSALYLL 73 (85)
T ss_dssp --CEEEEECGGGCEE-EEECCTTCBHHHHHHHHHH--HHCCCGGGEEEEETBEECCTTCB-----TTTTTCCTTCEEEEE
T ss_pred CeEEEEEEeCCCCEE-EEEECCCCcHHHHHHHHHH--HHCCCHHHEEEEECCeECCCCCC-----HHHCCCCCCCEEEEE
Confidence 469999999999888 8999999999999999999 99999999999999999988888 999999999999999
Q ss_pred EecCC
Q 034173 88 LFNLD 92 (102)
Q Consensus 88 ~~~~~ 92 (102)
++-+.
T Consensus 74 ~rl~G 78 (85)
T 3n3k_B 74 LKLRG 78 (85)
T ss_dssp ECCC-
T ss_pred EeccC
Confidence 98763
No 21
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.85 E-value=4.2e-21 Score=121.18 Aligned_cols=80 Identities=21% Similarity=0.197 Sum_probs=72.8
Q ss_pred CCCcEEEEEEcCCC-CCceEE-EecCCCcHHHHHHHHHhccCCCCCCCceEEEeCCeecCCCCCCCCCCccccCCCCCCE
Q 034173 6 ISESVEITVKTIGP-APPSRL-SVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGGN 83 (102)
Q Consensus 6 ~~~~i~I~vK~~~~-~~~~~l-~v~~~~TV~~LK~~Ia~~~~~~ip~~~qrLi~~Gk~L~D~~t~~~~~L~~~~I~~g~t 83 (102)
.+.+|+|+||+++| +.+ .+ +|++++||.+||++|++ ..++|+++|||+|+|+.|+|+.+ |++|+|++|++
T Consensus 4 ~~~~m~i~Vk~~~g~~~~-~l~~v~~~~tV~~lK~~i~~--~~gip~~~qrL~~~gk~L~d~~t-----L~~~~i~~g~~ 75 (89)
T 1wy8_A 4 GSSGMWIQVRTIDGSKTC-TIEDVSRKATIEELRERVWA--LFDVRPECQRLFYRGKQLENGYT-----LFDYDVGLNDI 75 (89)
T ss_dssp CSSCEEEEEEETTCSCEE-EEEEECTTCBHHHHHHHHHH--HSCCCTTTEEEEETTEECCSSSB-----HHHHTCCTTCE
T ss_pred CCCcEEEEEEECCCCceE-EEEecCCCCCHHHHHHHHHH--HHCcChhhEEEEECCeECCCCCC-----HHHCCCCCCCE
Confidence 35679999999999 566 89 59999999999999999 99999999999999999988888 99999999999
Q ss_pred EEEEEecCCC
Q 034173 84 INISLFNLDD 93 (102)
Q Consensus 84 i~l~~~~~~~ 93 (102)
|||+++.+..
T Consensus 76 i~l~~~~~gG 85 (89)
T 1wy8_A 76 IQLLVRPDSG 85 (89)
T ss_dssp EEEEECCCCS
T ss_pred EEEEEeCCCC
Confidence 9999987654
No 22
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.85 E-value=2.5e-21 Score=121.56 Aligned_cols=80 Identities=18% Similarity=0.194 Sum_probs=73.7
Q ss_pred CCCcEEEEEEcCCCCCceEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEeCCeecCCCCCCCCCCccccCCCCCCEEE
Q 034173 6 ISESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGGNIN 85 (102)
Q Consensus 6 ~~~~i~I~vK~~~~~~~~~l~v~~~~TV~~LK~~Ia~~~~~~ip~~~qrLi~~Gk~L~D~~t~~~~~L~~~~I~~g~ti~ 85 (102)
.+..|+|+||+.+++.+ .++|++++||.+||++|++ ..++|+++|||+|+|+.|+|+.+ |++|+|++|++||
T Consensus 4 ~~~~m~i~Vk~~~g~~~-~~~v~~~~tV~~lK~~i~~--~~gi~~~~qrL~~~Gk~L~d~~t-----L~~~~i~~g~~i~ 75 (87)
T 1wh3_A 4 GSSGIQVFVKNPDGGSY-AYAINPNSFILGLKQQIED--QQGLPKKQQQLEFQGQVLQDWLG-----LGIYGIQDSDTLI 75 (87)
T ss_dssp CSSSEEEEEEETTTEEE-EEEECSSSBHHHHHHHHHH--HTCCCTTTEEEEETTEECCSSSB-----HHHHTCCTTEEEE
T ss_pred CCCCEEEEEEcCCCCEE-EEEeCCCChHHHHHHHHHH--HhCCChHHEEEEECCEEccCCCC-----HHHCCCCCCCEEE
Confidence 34679999999999887 8999999999999999999 99999999999999999988888 9999999999999
Q ss_pred EEEecCCC
Q 034173 86 ISLFNLDD 93 (102)
Q Consensus 86 l~~~~~~~ 93 (102)
++++.+..
T Consensus 76 l~~~~~GG 83 (87)
T 1wh3_A 76 LSKKKGSG 83 (87)
T ss_dssp EEECSCCC
T ss_pred EEEeccCC
Confidence 99987643
No 23
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.85 E-value=1.5e-21 Score=128.32 Aligned_cols=75 Identities=17% Similarity=0.270 Sum_probs=69.2
Q ss_pred cEEEEEEcCCCCCceEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEeCCeecCCCCCCCCCCccccCCCCCCEEEEEE
Q 034173 9 SVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGGNINISL 88 (102)
Q Consensus 9 ~i~I~vK~~~~~~~~~l~v~~~~TV~~LK~~Ia~~~~~~ip~~~qrLi~~Gk~L~D~~t~~~~~L~~~~I~~g~ti~l~~ 88 (102)
.|+|+||+++|+.+ .++|++++||.+||++|++ ..++|+++|||+|+|+.|+|+.+ |++|||++|++|+|++
T Consensus 1 mm~I~Vk~~~g~~~-~l~v~~~~TV~~LK~~I~~--~~gip~~~QrLi~~Gk~L~D~~t-----L~~~~i~~g~~i~lv~ 72 (106)
T 3m62_B 1 MVSLTFKNFKKEKV-PLDLEPSNTILETKTKLAQ--SISCEESQIKLIYSGKVLQDSKT-----VSECGLKDGDQVVFMV 72 (106)
T ss_dssp --CEEEECTTCCEE-EECCCTTSBHHHHHHHHHH--TTTSCGGGCEEEETTEECCTTSB-----TTTTTCCTTCEEEEEC
T ss_pred CEEEEEEeCCCCEE-EEEECCCCcHHHHHHHHHH--HHCCChhhEEEEECCEECCCcCC-----HHHcCCCCCCEEEEEE
Confidence 38999999999988 8999999999999999999 99999999999999999988888 9999999999999999
Q ss_pred ecC
Q 034173 89 FNL 91 (102)
Q Consensus 89 ~~~ 91 (102)
+.+
T Consensus 73 ~~~ 75 (106)
T 3m62_B 73 SQK 75 (106)
T ss_dssp CC-
T ss_pred cCC
Confidence 876
No 24
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=99.85 E-value=1.4e-21 Score=120.95 Aligned_cols=77 Identities=16% Similarity=0.294 Sum_probs=72.2
Q ss_pred CcEEEEEEcCCCCCceEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEeCCeecCCCCCCCCCCccccCCCCCCEEEEE
Q 034173 8 ESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGGNINIS 87 (102)
Q Consensus 8 ~~i~I~vK~~~~~~~~~l~v~~~~TV~~LK~~Ia~~~~~~ip~~~qrLi~~Gk~L~D~~t~~~~~L~~~~I~~g~ti~l~ 87 (102)
+.|+|+||+.+|+.+ .++|++++||.+||++|++ +.++|+++|||+|+|+.|+|+.+ |++|+|++|++|+++
T Consensus 2 ~~m~i~vk~~~g~~~-~~~v~~~~tv~~lk~~i~~--~~gi~~~~qrL~~~G~~L~d~~t-----l~~~~i~~~~~i~l~ 73 (79)
T 2uyz_B 2 EYIKLKVIGQDSSEI-HFKVKMTTHLKKLKESYCQ--RQGVPMNSLRFLFEGQRIADNHT-----PKELGMEEEDVIEVY 73 (79)
T ss_dssp CEEEEEEECTTCCEE-EEEEETTSCTHHHHHHHHH--HHTCCGGGEEEEETTEECCTTCC-----HHHHTCCTTEEEEEE
T ss_pred CeEEEEEECCCCCEE-EEEECCCChHHHHHHHHHH--HHCCCcccEEEEECCEEeCCCCC-----HHHcCCCCCCEEEEE
Confidence 359999999999988 8999999999999999999 99999999999999999998888 999999999999999
Q ss_pred EecCC
Q 034173 88 LFNLD 92 (102)
Q Consensus 88 ~~~~~ 92 (102)
++.+.
T Consensus 74 ~~~~G 78 (79)
T 2uyz_B 74 QEQTG 78 (79)
T ss_dssp ECCCC
T ss_pred EeccC
Confidence 98653
No 25
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=99.85 E-value=4.1e-21 Score=116.84 Aligned_cols=75 Identities=21% Similarity=0.323 Sum_probs=70.3
Q ss_pred EEEEEEcCCCCCceEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEeCCeecCCCCCCCCCCccccCCCCCCEEEEEEe
Q 034173 10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGGNINISLF 89 (102)
Q Consensus 10 i~I~vK~~~~~~~~~l~v~~~~TV~~LK~~Ia~~~~~~ip~~~qrLi~~Gk~L~D~~t~~~~~L~~~~I~~g~ti~l~~~ 89 (102)
|+|+||+.+|+.+ .+++++++||.+||++|++ ..++|+++|||+|+|+.|.|+.+ |++|+|++|++||++++
T Consensus 1 M~i~vk~~~g~~~-~i~v~~~~tv~~lK~~i~~--~~~i~~~~q~L~~~g~~L~d~~t-----L~~~~i~~g~~i~l~~~ 72 (76)
T 3a9j_A 1 MQIFVKTLTGKTI-TLEVEPSDTIENVKAKIQD--KEGIPPDQQRLIFAGKQLEDGRT-----LSDYNIQRESTLHLVLR 72 (76)
T ss_dssp CEEEEEETTSCEE-EEECCTTCBHHHHHHHHHH--HHCCCGGGEEEEETTEECCTTCB-----TGGGTCCTTCEEEEEEC
T ss_pred CEEEEEcCCCCEE-EEEECCCCcHHHHHHHHHH--HHCcCHHHeEEEECCeECCCCCc-----HHHcCCCCCCEEEEEEe
Confidence 7899999999887 8999999999999999999 99999999999999999988777 99999999999999998
Q ss_pred cCC
Q 034173 90 NLD 92 (102)
Q Consensus 90 ~~~ 92 (102)
.+.
T Consensus 73 ~~G 75 (76)
T 3a9j_A 73 LRG 75 (76)
T ss_dssp CCC
T ss_pred CCC
Confidence 753
No 26
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=99.85 E-value=1.9e-21 Score=125.69 Aligned_cols=77 Identities=22% Similarity=0.329 Sum_probs=71.3
Q ss_pred CCcEEEEEEcCCCCCceEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEeCCeecCCCCCCCCCCccccCCCCCCEEEE
Q 034173 7 SESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGGNINI 86 (102)
Q Consensus 7 ~~~i~I~vK~~~~~~~~~l~v~~~~TV~~LK~~Ia~~~~~~ip~~~qrLi~~Gk~L~D~~t~~~~~L~~~~I~~g~ti~l 86 (102)
+..|+|+||+.+|+.+ .++|++++||.+||++|++ ..++|+++|||+|+|+.|+|+.+ |++|+|++|++|+|
T Consensus 20 ~~~m~I~Vk~~~g~~~-~l~v~~~~TV~~LK~~I~~--~~gip~~~qrLi~~Gk~L~D~~t-----L~~~~i~~g~~i~l 91 (98)
T 4hcn_B 20 GRPMQIFVKTLTGKTI-TLEVESSDTIDNVKSKIQD--KEGIPPDQQRLIFAGKQLEDGRT-----LSDYNIQKESTLHL 91 (98)
T ss_dssp --CCEEEEEETTCCEE-EEECCTTCBHHHHHHHHHH--HHCCCGGGCEEEETTEECCTTCB-----SGGGTCCTTEEEEE
T ss_pred CCeEEEEEEeCCCCEE-EEEECCCCcHHHHHHHHHH--HhCCChhHEEEEECCEECCCCCc-----HHHCCCCCCCEEEE
Confidence 3579999999999988 8999999999999999999 99999999999999999988888 99999999999999
Q ss_pred EEecC
Q 034173 87 SLFNL 91 (102)
Q Consensus 87 ~~~~~ 91 (102)
+++-+
T Consensus 92 ~~rl~ 96 (98)
T 4hcn_B 92 VLRLR 96 (98)
T ss_dssp ECBCS
T ss_pred EEecC
Confidence 98865
No 27
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.85 E-value=4.1e-21 Score=125.16 Aligned_cols=83 Identities=19% Similarity=0.261 Sum_probs=76.2
Q ss_pred CCCCCCCcEEEEEEcCCCCCceEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEeCCeecCCCCCCCCCCccccCCCCC
Q 034173 2 GMGEISESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNG 81 (102)
Q Consensus 2 ~~~~~~~~i~I~vK~~~~~~~~~l~v~~~~TV~~LK~~Ia~~~~~~ip~~~qrLi~~Gk~L~D~~t~~~~~L~~~~I~~g 81 (102)
-|+..+..|+|+||+.+++ + .++|++++||.+||++|++ ..++|+++|||+|+|+.|+|+.+ |++|+|++|
T Consensus 15 ~~~~~~~~m~I~Vk~~~g~-~-~l~v~~~~TV~~LK~~I~~--~~gip~~~QrLi~~Gk~L~D~~t-----L~~ygI~~g 85 (100)
T 1yqb_A 15 VPRGSPHLIKVTVKTPKDK-E-DFSVTDTCTIQQLKEEISQ--RFKAHPDQLVLIFAGKILKDPDS-----LAQCGVRDG 85 (100)
T ss_dssp CCSCCTTEEEEEEECSSCE-E-EEEEETTCBHHHHHHHHHH--HHTCCGGGEEEEETTEECCTTSB-----HHHHTCCTT
T ss_pred CCCCCCCeEEEEEEcCCCc-E-EEEECCCCcHHHHHHHHHH--HHCcChhhEEEEECCEECCCcCc-----HHHCCCCCC
Confidence 3677888999999999986 5 8999999999999999999 99999999999999999988888 999999999
Q ss_pred CEEEEEEecCCC
Q 034173 82 GNINISLFNLDD 93 (102)
Q Consensus 82 ~ti~l~~~~~~~ 93 (102)
++|+|+++.+..
T Consensus 86 stI~l~~r~~~~ 97 (100)
T 1yqb_A 86 LTVHLVIKRQHR 97 (100)
T ss_dssp CEEEEEECCCCS
T ss_pred CEEEEEEcCCCC
Confidence 999999987644
No 28
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.85 E-value=5e-21 Score=123.52 Aligned_cols=78 Identities=19% Similarity=0.263 Sum_probs=71.7
Q ss_pred CCcEEEEEEcCCCCCceEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEeCCeecCCC-CCCCCCCccccCCCCCCEEE
Q 034173 7 SESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDT-QDDDDRDDVYLQLSNGGNIN 85 (102)
Q Consensus 7 ~~~i~I~vK~~~~~~~~~l~v~~~~TV~~LK~~Ia~~~~~~ip~~~qrLi~~Gk~L~D~-~t~~~~~L~~~~I~~g~ti~ 85 (102)
...|+|+||++++ .+ .++|++++||.+||++|++ ..++|+++|||+|+|+.|+|+ .+ |++|+|++|++|+
T Consensus 13 ~~~~~I~Vk~~~~-~~-~l~v~~~~TV~~LK~~I~~--~~gip~~~QrLi~~Gk~L~D~~~t-----L~~ygI~~gstl~ 83 (94)
T 2kan_A 13 VRKIHVTVKFPSK-QF-TVEVDRTETVSSLKDKIHI--VENTPIKRMQLYYSGIELADDYRN-----LNEYGITEFSEIV 83 (94)
T ss_dssp SCCEEEEEECSSC-EE-EEEECTTCBHHHHHHHHHH--HSSSCTTTEEEEETTEEECCTTSB-----HHHHTCCTTEEEE
T ss_pred CCCEEEEEEcCCc-EE-EEEECCCCcHHHHHHHHHH--HHCcCHHHEEEEECCEECCCCccc-----HHHCCCCCCCEEE
Confidence 4679999999988 55 8999999999999999999 999999999999999999887 77 9999999999999
Q ss_pred EEEecCCC
Q 034173 86 ISLFNLDD 93 (102)
Q Consensus 86 l~~~~~~~ 93 (102)
|+++.+..
T Consensus 84 lv~r~~gg 91 (94)
T 2kan_A 84 VFLKSINR 91 (94)
T ss_dssp EEECCCSS
T ss_pred EEEeCCCC
Confidence 99987643
No 29
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=99.84 E-value=4.1e-21 Score=124.21 Aligned_cols=78 Identities=15% Similarity=0.292 Sum_probs=73.0
Q ss_pred CCcEEEEEEcCCCCCceEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEeCCeecCCCCCCCCCCccccCCCCCCEEEE
Q 034173 7 SESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGGNINI 86 (102)
Q Consensus 7 ~~~i~I~vK~~~~~~~~~l~v~~~~TV~~LK~~Ia~~~~~~ip~~~qrLi~~Gk~L~D~~t~~~~~L~~~~I~~g~ti~l 86 (102)
+..|+|+||+++|+.+ .++|.+++||.+||++|++ +.++|+++|||+|.|+.|.|+.+ |++|+|++|++|||
T Consensus 19 ~~~m~I~Vk~~~g~~~-~l~v~~~~tv~~lK~~i~~--~~gip~~~qrLif~Gk~L~d~~t-----l~dy~i~~g~~I~l 90 (97)
T 1wyw_B 19 GEYIKLKVIGQDSSEI-HFKVKMTTHLKKLKESYCQ--RQGVPMNSLRFLFEGQRIADNHT-----PKELGMEEEDVIEV 90 (97)
T ss_dssp CCEEEEEEECTTCCEE-EEEEETTSCTHHHHHHHHH--HHTCCGGGEEEEETTEECCTTCC-----HHHHTCCTTCEEEE
T ss_pred CCcEEEEEEeCCCCEE-EEEECCCCcHHHHHHHHHH--HHCCChhhEEEEECCeEcCCCCC-----HHHCCCCCCCEEEE
Confidence 4569999999999988 8999999999999999999 99999999999999999998888 99999999999999
Q ss_pred EEecCC
Q 034173 87 SLFNLD 92 (102)
Q Consensus 87 ~~~~~~ 92 (102)
+++.+.
T Consensus 91 ~~~~~G 96 (97)
T 1wyw_B 91 YQEQTG 96 (97)
T ss_dssp EESSSC
T ss_pred EEecCC
Confidence 998653
No 30
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=99.84 E-value=7.1e-21 Score=121.59 Aligned_cols=77 Identities=21% Similarity=0.300 Sum_probs=71.1
Q ss_pred EEEEEEcCCCCCceEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEeCCeecCCCCCCCCCCccccCCCCCCEEEEEEe
Q 034173 10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGGNINISLF 89 (102)
Q Consensus 10 i~I~vK~~~~~~~~~l~v~~~~TV~~LK~~Ia~~~~~~ip~~~qrLi~~Gk~L~D~~t~~~~~L~~~~I~~g~ti~l~~~ 89 (102)
|+|+||+.+|+.+ .++|++++||.+||++|++ ..++|+++|||+|+|+.|+|+.+ |++|+|++|++|||+++
T Consensus 2 m~i~vk~~~g~~~-~~~v~~~~TV~~LK~~i~~--~~gip~~~qrL~~~G~~L~d~~t-----L~~~~i~~~~~i~l~~r 73 (96)
T 3k9o_B 2 MQIFVKTLTGKTI-TLEVEPSDTIENVKAKIQD--KEGIPPDQQRLIFAGKQLEDGRT-----LSDYNIQKESTLHLVLR 73 (96)
T ss_dssp CEEEEEETTCCEE-EEECCTTCBHHHHHHHHHH--HHCCCGGGEEEEETTEECCTTSB-----TGGGTCCTTCEEEEEEC
T ss_pred cEEEEEeCCCCEE-EEEECCCCCHHHHHHHHHh--hhCCChhHEEEEECCEECCCCCc-----HHHcCCCCCCEEEEEEE
Confidence 8999999999888 8999999999999999999 99999999999999999988888 99999999999999998
Q ss_pred cCCCc
Q 034173 90 NLDDL 94 (102)
Q Consensus 90 ~~~~~ 94 (102)
.....
T Consensus 74 ~~gG~ 78 (96)
T 3k9o_B 74 LRGYA 78 (96)
T ss_dssp CCC--
T ss_pred cCCCC
Confidence 76543
No 31
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.84 E-value=6.6e-21 Score=124.96 Aligned_cols=78 Identities=14% Similarity=0.149 Sum_probs=73.1
Q ss_pred CcEEEEEEcCCCCCceEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEeCCeecCCCCCCCCCCccccCCCCCCEEEEE
Q 034173 8 ESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGGNINIS 87 (102)
Q Consensus 8 ~~i~I~vK~~~~~~~~~l~v~~~~TV~~LK~~Ia~~~~~~ip~~~qrLi~~Gk~L~D~~t~~~~~L~~~~I~~g~ti~l~ 87 (102)
..|+|+||+++|+.+ .++|++++||.+||++|++ ..|+|+++|||+|+|+.|.|+.+ |++|||++|++|||+
T Consensus 22 ~~m~I~Vk~~~g~~~-~l~v~~~~TV~~LK~~I~~--~~gip~~~qrLi~~Gk~L~D~~t-----L~~ygI~~g~ti~lv 93 (106)
T 1ttn_A 22 YECQLRLRLSTGKDL-KLVVRSTDTVFHMKRRLHA--AEGVEPGSQRWFFSGRPLTDKMK-----FEELKIPKDYVVQVI 93 (106)
T ss_dssp CSEEEEEEETTTEEE-EEEECTTSHHHHHHHHHHH--TTCCCSTTCEEEETTEECCTTSH-----HHHCCCSSSCEEEEE
T ss_pred CeEEEEEEcCCCCEE-EEEeCCCCcHHHHHHHHHH--HHCcCcccEEEEECCEECCCCCc-----HHHcCCCCCCEEEEE
Confidence 469999999999887 8999999999999999999 99999999999999999988888 999999999999999
Q ss_pred EecCCC
Q 034173 88 LFNLDD 93 (102)
Q Consensus 88 ~~~~~~ 93 (102)
++.++.
T Consensus 94 ~~~~~~ 99 (106)
T 1ttn_A 94 VSQPVQ 99 (106)
T ss_dssp CCCSSC
T ss_pred EeCCCC
Confidence 988755
No 32
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=99.84 E-value=1.1e-20 Score=125.09 Aligned_cols=76 Identities=21% Similarity=0.313 Sum_probs=71.9
Q ss_pred CcEEEEEEcCCCCCceEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEeCCeecCCCCCCCCCCccccCCCCCCEEEEE
Q 034173 8 ESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGGNINIS 87 (102)
Q Consensus 8 ~~i~I~vK~~~~~~~~~l~v~~~~TV~~LK~~Ia~~~~~~ip~~~qrLi~~Gk~L~D~~t~~~~~L~~~~I~~g~ti~l~ 87 (102)
..|+|+||+.+|+.+ .++|++++||.+||++|++ ..++|+++|||+|+|+.|+|+.+ |++|+|++|++|||+
T Consensus 34 ~~m~I~Vk~~~G~~~-~l~v~~~~TV~~LK~~I~~--~~gip~~~QrLi~~Gk~L~D~~t-----L~~~gI~~gs~I~l~ 105 (111)
T 3vdz_A 34 LAMQIFVKTLTGKTI-TLEVEPSDTIENVKAKIQD--KEGIPPDQQRLIFAGKQLEDGRT-----LSDYNIQKESTLHLV 105 (111)
T ss_dssp GCEEEEEECSSSCEE-EEEECTTCBHHHHHHHHHH--HHCCCGGGEEEEETTEECCTTSB-----TTTTTCCTTCEEEEE
T ss_pred ccEEEEEEeCCCCEE-EEEeCCCCCHHHHHHHHHH--HhCCChHHEEEEECCEECCCCCc-----HHHCCCCCCCEEEEE
Confidence 469999999999988 8999999999999999999 99999999999999999988888 999999999999999
Q ss_pred EecC
Q 034173 88 LFNL 91 (102)
Q Consensus 88 ~~~~ 91 (102)
++-+
T Consensus 106 ~rl~ 109 (111)
T 3vdz_A 106 LRLR 109 (111)
T ss_dssp ECCC
T ss_pred EecC
Confidence 9865
No 33
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=99.84 E-value=6.2e-21 Score=121.17 Aligned_cols=76 Identities=17% Similarity=0.304 Sum_probs=68.5
Q ss_pred cEEEEEEcCCCCCceEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEeCCeecCCCCCCCCCCccccCCCCCCEEEEEE
Q 034173 9 SVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGGNINISL 88 (102)
Q Consensus 9 ~i~I~vK~~~~~~~~~l~v~~~~TV~~LK~~Ia~~~~~~ip~~~qrLi~~Gk~L~D~~t~~~~~L~~~~I~~g~ti~l~~ 88 (102)
-|+|+||+.+|+.+ .+++++++||.+||++|++ ..++|+++|||+|+|+.|+|+.+ |++|+|++|++|++++
T Consensus 9 ~~~i~v~~~~G~~~-~l~v~~~~TV~~LK~~I~~--~~gip~~~qrL~~~Gk~L~D~~t-----L~~~gi~~g~~i~l~~ 80 (88)
T 1sif_A 9 GLQLFIKTLTGKTF-TVEMEPSDTIENLKAKIQD--KEGIPPDQQRLIFAGKQLEDGRT-----LSDYNIQKESTLHLVL 80 (88)
T ss_dssp -CEEEEEETTSCEE-EEECCTTSBHHHHHHHHHH--HHCCCGGGCEEEETTEECCTTSB-----SGGGTCCTTCEEEEEC
T ss_pred ceEEEEEeCCCCEE-EEEECCCChHHHHHHHHHH--HHCcChhhEEEEECCEECCCCCc-----HHHcCCCCCCEEEEEE
Confidence 38999999999988 8999999999999999999 99999999999999999988877 9999999999999998
Q ss_pred ecCC
Q 034173 89 FNLD 92 (102)
Q Consensus 89 ~~~~ 92 (102)
+.+.
T Consensus 81 r~~G 84 (88)
T 1sif_A 81 RLRG 84 (88)
T ss_dssp ----
T ss_pred eCCC
Confidence 8764
No 34
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.84 E-value=7.9e-21 Score=128.06 Aligned_cols=80 Identities=11% Similarity=0.144 Sum_probs=72.5
Q ss_pred CcEEEEEE-cCCCCCceEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEeCCeecCCCCCCCCCCccccCCCCCCEEEE
Q 034173 8 ESVEITVK-TIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGGNINI 86 (102)
Q Consensus 8 ~~i~I~vK-~~~~~~~~~l~v~~~~TV~~LK~~Ia~~~~~~ip~~~qrLi~~Gk~L~D~~t~~~~~L~~~~I~~g~ti~l 86 (102)
..|+|+|+ +++++.+ .+++++++||++||+++++ ..++|+++|||||+||+|+|+.| |++|||++|+||||
T Consensus 14 ~~itvkv~l~~~~~k~-tv~v~~d~TV~dLKe~ls~--~~~iP~e~qrLIy~GKiLKD~eT-----L~~~gIk~g~TIhL 85 (118)
T 2daf_A 14 SLATVKVVLIPVGQEI-VIPFKVDTILKYLKDHFSH--LLGIPHSVLQIRYSGKILKNNET-----LVQHGVKPQEIVQV 85 (118)
T ss_dssp SCEEEEEEETTTCCEE-EEEECSSSCSHHHHHHHHH--HHTCCTTTEEEEETTEEECSSCC-----HHHHSCCSSCEEEE
T ss_pred ccEEEEEEEcCCCcEE-EEEeCCCCcHHHHHHHHHh--hhCCChHHEEEEECCeEcCCcch-----HHHcCCCCCCEEEE
Confidence 35888888 6677777 9999999999999999999 89999999999999999999888 99999999999999
Q ss_pred EEecCCCce
Q 034173 87 SLFNLDDLS 95 (102)
Q Consensus 87 ~~~~~~~~~ 95 (102)
+++..+-.-
T Consensus 86 vi~s~~p~~ 94 (118)
T 2daf_A 86 EIFSTNPDL 94 (118)
T ss_dssp EEEESCTTT
T ss_pred EEecCCCcc
Confidence 999876544
No 35
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.84 E-value=1.2e-20 Score=127.61 Aligned_cols=82 Identities=18% Similarity=0.285 Sum_probs=73.5
Q ss_pred CCCCCCCcEEEEEEcCCCCCceEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEeCCeecCCCCCCCCCCccccCCCCC
Q 034173 2 GMGEISESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNG 81 (102)
Q Consensus 2 ~~~~~~~~i~I~vK~~~~~~~~~l~v~~~~TV~~LK~~Ia~~~~~~ip~~~qrLi~~Gk~L~D~~t~~~~~L~~~~I~~g 81 (102)
+|++++..|+|+||+. ++.+ .++|++++||.+||++|++ ..++|+++|||+|+|+.|+|+.+ |++|+|++|
T Consensus 25 ~~~~~~~~m~I~Vk~~-g~~~-~l~v~~~~TV~~LK~~I~~--~~gip~~~QrLi~~Gk~L~D~~t-----L~dygI~~g 95 (125)
T 1j8c_A 25 AAPAEPKIIKVTVKTP-KEKE-EFAVPENSSVQQFKEAISK--RFKSQTDQLVLIFAGKILKDQDT-----LIQHGIHDG 95 (125)
T ss_dssp SCCCCCCCEEEEEECS-SCEE-EEEECTTCCHHHHHHHHHH--HHCSCSSSEEEEETTEEESTTSC-----GGGTTCSSS
T ss_pred cccCCCCcEEEEEEeC-CeEE-EEEECCCCcHHHHHHHHHH--HHCcCcceEEEEECCEEcCCCCC-----HHHcCCCCC
Confidence 3677778899999998 7777 8999999999999999999 99999999999999999988888 999999999
Q ss_pred CEEEEEEecCC
Q 034173 82 GNINISLFNLD 92 (102)
Q Consensus 82 ~ti~l~~~~~~ 92 (102)
++|+|+++...
T Consensus 96 stI~lv~~~~g 106 (125)
T 1j8c_A 96 LTVHLVIKRDP 106 (125)
T ss_dssp EEEEEEEC---
T ss_pred CEEEEEeccCC
Confidence 99999998764
No 36
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=99.83 E-value=1.7e-20 Score=114.91 Aligned_cols=73 Identities=26% Similarity=0.471 Sum_probs=67.6
Q ss_pred cEEEEEEcCCCCCceEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEeCCeecCCCCCCCCCCccccCCCCCCEEEEEE
Q 034173 9 SVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGGNINISL 88 (102)
Q Consensus 9 ~i~I~vK~~~~~~~~~l~v~~~~TV~~LK~~Ia~~~~~~ip~~~qrLi~~Gk~L~D~~t~~~~~L~~~~I~~g~ti~l~~ 88 (102)
.|+|+||+ +|+.+ .+++++++||.+||++|++ ..++|+++|||+|+|+.|.|+.+ |++|||++|++||+..
T Consensus 4 ~m~i~vk~-~g~~~-~~~v~~~~tV~~LK~~i~~--~~~i~~~~qrL~~~gk~L~d~~t-----L~~~~i~~g~~i~l~~ 74 (77)
T 2bwf_A 4 SLNIHIKS-GQDKW-EVNVAPESTVLQFKEAINK--ANGIPVANQRLIYSGKILKDDQT-----VESYHIQDGHSVHLVK 74 (77)
T ss_dssp EEEEEEEE-TTEEE-EEEECTTCBHHHHHHHHHH--HHCCCGGGEEEEETTEECCTTSB-----TGGGTCCTTCEEEEEE
T ss_pred EEEEEEEE-CCEEE-EEEECCCCcHHHHHHHHHH--HhCCCHHHEEEEECCeEcCCCCC-----HHHcCCCCCCEEEEEE
Confidence 39999999 88777 8999999999999999999 99999999999999999988877 9999999999999976
Q ss_pred ec
Q 034173 89 FN 90 (102)
Q Consensus 89 ~~ 90 (102)
+.
T Consensus 75 ~~ 76 (77)
T 2bwf_A 75 SQ 76 (77)
T ss_dssp CC
T ss_pred cC
Confidence 54
No 37
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.83 E-value=1.8e-20 Score=123.21 Aligned_cols=76 Identities=17% Similarity=0.059 Sum_probs=66.5
Q ss_pred cEEEEEEcCC----CCCceEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEeCCeecCCCCCCCCCCccccCCCCCCEE
Q 034173 9 SVEITVKTIG----PAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGGNI 84 (102)
Q Consensus 9 ~i~I~vK~~~----~~~~~~l~v~~~~TV~~LK~~Ia~~~~~~ip~~~qrLi~~Gk~L~D~~t~~~~~L~~~~I~~g~ti 84 (102)
..+|.|+.++ ++.+ .++|++++||.+||++|++ +.++||++|||||+||+|+|+.+ |++|+|++|++|
T Consensus 15 ~ati~V~~~~~~~~~~~~-~lev~~~~TV~~lK~kI~~--k~gip~~qQrLI~~GKiL~D~~T-----L~~y~I~~gsti 86 (100)
T 1wju_A 15 IATIEVFLPPRLKKDRKN-LLETRLHITGRELRSKIAE--TFGLQENYIKIVINKKQLQLGKT-----LEEQGVAHNVKA 86 (100)
T ss_dssp EEEEEEECCTTTCCSSSE-EEEEESSSBHHHHHHHHHH--HTTCCSTTCEEEETTEECCTTSB-----HHHHTCCSSEEE
T ss_pred eEEEEEEecCCCCCCcEE-EEEeCCcCHHHHHHHHHHH--HHCcCHHHeEEEeCCeECCCCCc-----HHHcCCCCCCEE
Confidence 3567777776 6566 8999999999999999999 99999999999999999998888 999999999999
Q ss_pred EEEEecCC
Q 034173 85 NISLFNLD 92 (102)
Q Consensus 85 ~l~~~~~~ 92 (102)
++++....
T Consensus 87 ~vl~lrg~ 94 (100)
T 1wju_A 87 MVLELKQS 94 (100)
T ss_dssp EEECCCCC
T ss_pred EEEEECCC
Confidence 77664443
No 38
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=99.83 E-value=3.3e-20 Score=119.45 Aligned_cols=76 Identities=21% Similarity=0.322 Sum_probs=71.3
Q ss_pred EEEEEEcCCCCCceEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEeCCeecCCCCCCCCCCccccCCCCCCEEEEEEe
Q 034173 10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGGNINISLF 89 (102)
Q Consensus 10 i~I~vK~~~~~~~~~l~v~~~~TV~~LK~~Ia~~~~~~ip~~~qrLi~~Gk~L~D~~t~~~~~L~~~~I~~g~ti~l~~~ 89 (102)
|+|+||+++|+.+ .++|++++||.+||++|++ ..++|+++|||+|+|+.|+|+.+ |++|||++|++|+++++
T Consensus 1 M~I~Vk~~~g~~~-~~~v~~~~TV~~LK~~I~~--~~gi~~~~qrL~~~Gk~L~D~~t-----L~~~gi~~g~~i~l~~~ 72 (98)
T 1yx5_B 1 MQIFVKTLTGKTI-TLEVEPSDTIENVKAKIQD--KEGIPPDQQRLIFAGKQLEDGRT-----LSDYNIQKESTLHLVLR 72 (98)
T ss_dssp CEEEEEETTSCEE-EEECCTTCBHHHHHHHHHH--HTCCCGGGEEEEETTEECCTTSB-----TGGGTCCTTCEEEEEEC
T ss_pred CEEEEEeCCCCEE-EEEECCCCcHHHHHHHHHH--HHCcChhhEEEEECCEECCCCCC-----HHHcCCCCCCEEEEEEe
Confidence 7899999999887 8999999999999999999 99999999999999999988877 99999999999999998
Q ss_pred cCCC
Q 034173 90 NLDD 93 (102)
Q Consensus 90 ~~~~ 93 (102)
.+..
T Consensus 73 ~~gG 76 (98)
T 1yx5_B 73 LRGG 76 (98)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8754
No 39
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.82 E-value=3.6e-20 Score=120.73 Aligned_cols=78 Identities=19% Similarity=0.298 Sum_probs=71.0
Q ss_pred CCCcEEEEEEcCCCCCceEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEeCCeecCCCCCCCCCCccccCCCCCCEEE
Q 034173 6 ISESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGGNIN 85 (102)
Q Consensus 6 ~~~~i~I~vK~~~~~~~~~l~v~~~~TV~~LK~~Ia~~~~~~ip~~~qrLi~~Gk~L~D~~t~~~~~L~~~~I~~g~ti~ 85 (102)
.+..|+|+||+. |+.+ .++|++++||.+||++|++ ..++|+++|||+|+|+.|+|+.+ |++|||++|++|+
T Consensus 22 ~~~~m~I~Vk~~-g~~~-~l~v~~~~TV~~LK~~I~~--~~gip~~~qrLi~~Gk~L~D~~t-----L~~~gI~~g~~I~ 92 (101)
T 2klc_A 22 HPKIMKVTVKTP-KEKE-EFAVPENSSVQQFKEEISK--RFKSHTDQLVLIFAGKILKDQDT-----LSQHGIHDGLTVH 92 (101)
T ss_dssp -CCCEEEEEECS-SCEE-EEEECSCCCHHHHHHHHHH--HHTCCGGGEEEEETTEEECTTCC-----TGGGTCCTTCEEE
T ss_pred CCCeEEEEEEeC-CcEE-EEEECCCCCHHHHHHHHHH--HHCcChhhEEEEECCEECCCcCc-----HHHcCCCCCCEEE
Confidence 356799999998 6666 8999999999999999999 99999999999999999988888 9999999999999
Q ss_pred EEEecCC
Q 034173 86 ISLFNLD 92 (102)
Q Consensus 86 l~~~~~~ 92 (102)
|+++.+.
T Consensus 93 l~~~~~~ 99 (101)
T 2klc_A 93 LVIKTQN 99 (101)
T ss_dssp EEECCSS
T ss_pred EEEcCCC
Confidence 9988753
No 40
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.82 E-value=1.4e-20 Score=120.66 Aligned_cols=78 Identities=22% Similarity=0.296 Sum_probs=71.5
Q ss_pred CCCcEEEEEEcCCCCCceEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEeCCeecCCCCCCCCCCccccCCCCCCEEE
Q 034173 6 ISESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGGNIN 85 (102)
Q Consensus 6 ~~~~i~I~vK~~~~~~~~~l~v~~~~TV~~LK~~Ia~~~~~~ip~~~qrLi~~Gk~L~D~~t~~~~~L~~~~I~~g~ti~ 85 (102)
.++.|+|+||+. ++.+ .++|++++||.+||++|++ ..++|+++|||+|+|+.|+|+.+ |++|+|++|++||
T Consensus 14 ~~~~m~i~Vk~~-g~~~-~~~v~~~~TV~~LK~~I~~--~~gip~~~qrL~~~Gk~L~D~~t-----L~~~gi~~g~~i~ 84 (96)
T 1wx8_A 14 SSRIIRVSVKTP-QDCH-EFFLAENSNVRRFKKQISK--YLHCNADRLVLIFTGKILRDQDI-----LSQRGILDGSTVH 84 (96)
T ss_dssp CSCEEEEEEECS-SSEE-EEEEETTCCHHHHHHHHHH--HTCSCTTTBCCEETTEECCTTSC-----HHHHTCCTTEEEE
T ss_pred CCCcEEEEEEEC-CeEE-EEEECCCCCHHHHHHHHHH--HhCCCHHHEEEEECCEECCCcCC-----HHHCCCCCCCEEE
Confidence 346799999998 7777 8999999999999999999 99999999999999999988888 9999999999999
Q ss_pred EEEecCC
Q 034173 86 ISLFNLD 92 (102)
Q Consensus 86 l~~~~~~ 92 (102)
|+++...
T Consensus 85 l~~~~~~ 91 (96)
T 1wx8_A 85 VVVRSHS 91 (96)
T ss_dssp CCBCCSS
T ss_pred EEEeCCC
Confidence 9887654
No 41
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.82 E-value=1.7e-20 Score=120.49 Aligned_cols=76 Identities=13% Similarity=0.158 Sum_probs=68.0
Q ss_pred CCcEEEEEEcCCCCCceEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEeCCeecCCCCCCCCCCccccCCCCCCEEEE
Q 034173 7 SESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGGNINI 86 (102)
Q Consensus 7 ~~~i~I~vK~~~~~~~~~l~v~~~~TV~~LK~~Ia~~~~~~ip~~~qrLi~~Gk~L~D~~t~~~~~L~~~~I~~g~ti~l 86 (102)
+..|+|+||+ |+.+ .++|++++||.+||++|++ ..++|+++|||+|+|+.|+|+.+ |++|+|++|++|+|
T Consensus 17 ~~~m~I~Vk~--g~~~-~l~v~~~~TV~~LK~~I~~--~~gip~~~qrLi~~Gk~L~D~~t-----L~~y~I~~gstI~l 86 (93)
T 2l7r_A 17 RGSMQLFVRA--QELH-TFEVTGQETVAQIKAHVAS--LEGIAPEDQVVLLAGAPLEDEAT-----LGQCGVEALTTLEV 86 (93)
T ss_dssp ---CEEEEES--SSEE-EEECCSSCBHHHHHHHHHH--HHTCCGGGCEEEETTEECCTTSB-----HHHHTCCSSCEEEE
T ss_pred CCcEEEEEEC--CCEE-EEEeCCCCcHHHHHHHHHH--HhCcChhHEEEEECCEECCCCCc-----HHHCCCCCCCEEEE
Confidence 4569999999 6666 8999999999999999999 99999999999999999988888 99999999999999
Q ss_pred EEecCC
Q 034173 87 SLFNLD 92 (102)
Q Consensus 87 ~~~~~~ 92 (102)
+++-+.
T Consensus 87 v~rl~G 92 (93)
T 2l7r_A 87 AGRMLG 92 (93)
T ss_dssp ECCCCC
T ss_pred EEecCC
Confidence 988653
No 42
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.82 E-value=4.7e-20 Score=120.62 Aligned_cols=80 Identities=20% Similarity=0.288 Sum_probs=72.6
Q ss_pred CCCCCcEEEEEEcCCCCCceEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEeCCeecCCCCCCCCCCccccCCCCCCE
Q 034173 4 GEISESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGGN 83 (102)
Q Consensus 4 ~~~~~~i~I~vK~~~~~~~~~l~v~~~~TV~~LK~~Ia~~~~~~ip~~~qrLi~~Gk~L~D~~t~~~~~L~~~~I~~g~t 83 (102)
.+.+..|+|+||+.+++ + .++|++++||.+||++|++ ..++|+++|||+|+|+.|+|+.+ |++|+|++|++
T Consensus 12 ~~~~~~m~I~Vk~~~g~-~-~l~v~~~~TV~~LK~~I~~--~~gip~~~qrLi~~Gk~L~D~~t-----L~~~gi~~g~~ 82 (106)
T 1wx7_A 12 VQDPHLIKVTVKTPKDK-E-DFSVTDTCTIQQLKEEISQ--RFKAHPDQLVLIFAGKILKDPDS-----LAQCGVRDGLT 82 (106)
T ss_dssp CCCSSEEEEEEECSSCE-E-EEEEETTCCHHHHHHHHHH--HHTCCTTTEEEEETTEECCTTSC-----HHHHTCCTTEE
T ss_pred CCCCceEEEEEEeCCCc-E-EEEECCCCcHHHHHHHHHH--HHCcChhhEEEEECCEECCCcCc-----HHHcCCCCCCE
Confidence 34467799999999886 5 8999999999999999999 99999999999999999988888 99999999999
Q ss_pred EEEEEecCC
Q 034173 84 INISLFNLD 92 (102)
Q Consensus 84 i~l~~~~~~ 92 (102)
|||+++...
T Consensus 83 i~l~~~~~~ 91 (106)
T 1wx7_A 83 VHLVIKRQH 91 (106)
T ss_dssp EEEEECCCC
T ss_pred EEEEEcCCC
Confidence 999997653
No 43
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=99.71 E-value=9.1e-22 Score=120.66 Aligned_cols=74 Identities=19% Similarity=0.246 Sum_probs=69.8
Q ss_pred EEEEEEcCCCCCceEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEeCCeecCCCCCCCCCCccccCCCCCCEEEEEEe
Q 034173 10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGGNINISLF 89 (102)
Q Consensus 10 i~I~vK~~~~~~~~~l~v~~~~TV~~LK~~Ia~~~~~~ip~~~qrLi~~Gk~L~D~~t~~~~~L~~~~I~~g~ti~l~~~ 89 (102)
|+|+||+.+|+.+ .+++++++||.+||++|++ ..++|+++|||+|+|+.|+|+.+ |++|||++|++||++++
T Consensus 1 M~i~Vk~~~g~~~-~~~v~~~~tV~~lK~~i~~--~~gi~~~~qrL~~~gk~L~d~~t-----L~~~~i~~g~~i~l~~r 72 (76)
T 3b1l_X 1 MIVFVRFNSSYGF-PVEVDSDTSILQLKEVVAK--QQGVPADQLRVIFAGKELPNHLT-----VQNCDLEQQSIVHIVQR 72 (76)
Confidence 7899999999888 8999999999999999998 99999999999999999988888 99999999999999987
Q ss_pred cC
Q 034173 90 NL 91 (102)
Q Consensus 90 ~~ 91 (102)
.+
T Consensus 73 lr 74 (76)
T 3b1l_X 73 PR 74 (76)
Confidence 65
No 44
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=99.81 E-value=7.8e-20 Score=126.03 Aligned_cols=79 Identities=18% Similarity=0.151 Sum_probs=73.2
Q ss_pred CCcEEEEEEcCCCCCceEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEeCCeecCCCCCCCCCCccccCCCCCCEEEE
Q 034173 7 SESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGGNINI 86 (102)
Q Consensus 7 ~~~i~I~vK~~~~~~~~~l~v~~~~TV~~LK~~Ia~~~~~~ip~~~qrLi~~Gk~L~D~~t~~~~~L~~~~I~~g~ti~l 86 (102)
+..|+|+||+.+|+.+ .++|++++||.+||++|++ +.|+|+++|||+|+|+.|+|+.+ |++|+|++|++||+
T Consensus 79 ~~~m~i~vk~~~g~~~-~~~v~~~~tV~~lK~~i~~--~~gip~~~q~L~~~G~~L~d~~t-----L~~y~i~~g~~l~l 150 (159)
T 3rt3_B 79 DEPLSILVRNNKGRSS-TYEVRLTQTVAHLKQQVSG--LEGVQDDLFWLTFEGKPLEDQLP-----LGEYGLKPLSTVFM 150 (159)
T ss_dssp CCCEEEEEECTTSCEE-EEEECTTSBHHHHHHHHHH--HHTCCGGGEEEEETTEECCTTSB-----GGGGTCCTTCEEEE
T ss_pred CCcEEEEEECCCCCEE-EEEeCCCCCHHHHHHHHHH--HHCCCHHHEEEEECCeecCCCCC-----HHHcCCCCCCEEEE
Confidence 5679999999999988 8999999999999999999 99999999999999999988888 99999999999999
Q ss_pred EEecCCC
Q 034173 87 SLFNLDD 93 (102)
Q Consensus 87 ~~~~~~~ 93 (102)
+++-..+
T Consensus 151 ~~rl~GG 157 (159)
T 3rt3_B 151 NLRLRGG 157 (159)
T ss_dssp EECCC--
T ss_pred EEecCCC
Confidence 9987643
No 45
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=99.81 E-value=2.5e-20 Score=121.86 Aligned_cols=72 Identities=15% Similarity=0.205 Sum_probs=63.2
Q ss_pred CcEEEEEEcCCCC--CceEEEecCCCcHHHHHHHHHhccC-CC-CCCCceEEEeCCeecCCCCCCCCCCcccc--CCCCC
Q 034173 8 ESVEITVKTIGPA--PPSRLSVSSPIKVRDLRKLIATSSA-NH-LPIENLRLVFRGKVLDDTQDDDDRDDVYL--QLSNG 81 (102)
Q Consensus 8 ~~i~I~vK~~~~~--~~~~l~v~~~~TV~~LK~~Ia~~~~-~~-ip~~~qrLi~~Gk~L~D~~t~~~~~L~~~--~I~~g 81 (102)
..|+|+||+++++ .+ .+++++++||.+||++|++ + .+ +|+++|||||+||+|+|+.+ |++| +|++|
T Consensus 22 ~~m~I~VK~~~g~~~~i-~l~v~~~~TV~~LK~~I~~--~~~g~pp~~~QrLIy~Gk~L~D~~t-----L~~y~~~I~~~ 93 (99)
T 2kdb_A 22 HPVTLIIKAPNQKYSDQ-TISCFLNWTVGKLKTHLSN--VYPSKPLTKDQRLVYSGRLLPDHLQ-----LKDILRKQDEY 93 (99)
T ss_dssp -CEEEEEECTTSSSCCE-EEEECTTSBHHHHHHHHHH--HSTTCCCTTTCCEEETTEEECTTSB-----THHHHTTTCSE
T ss_pred CeEEEEEEcCCCCEEEE-EEEcCCCCHHHHHHHHHHH--HhcCCCChhhEEEEECCEECCCCCC-----HHHHhcCCCCC
Confidence 5699999999998 34 7888999999999999997 5 34 44699999999999998888 9999 99999
Q ss_pred CEEEEE
Q 034173 82 GNINIS 87 (102)
Q Consensus 82 ~ti~l~ 87 (102)
+||||+
T Consensus 94 ~tihLv 99 (99)
T 2kdb_A 94 HMVHLV 99 (99)
T ss_dssp EEEEEC
T ss_pred CEEEeC
Confidence 999974
No 46
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.81 E-value=9.5e-20 Score=120.15 Aligned_cols=78 Identities=19% Similarity=0.206 Sum_probs=72.3
Q ss_pred CCcEEEEEEcC---CCCCceEEEecC-CCcHHHHHHHHHhccCCCCCCCceEEEeCCeecCCCCCCCCCCccccCCCCCC
Q 034173 7 SESVEITVKTI---GPAPPSRLSVSS-PIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGG 82 (102)
Q Consensus 7 ~~~i~I~vK~~---~~~~~~~l~v~~-~~TV~~LK~~Ia~~~~~~ip~~~qrLi~~Gk~L~D~~t~~~~~L~~~~I~~g~ 82 (102)
+..|+|+||++ +|+.+ .++|++ ++||.+||++|++ ..++|+++|||+|+|+.|+|+.+ |++|+|++|+
T Consensus 25 ~~~i~i~Vk~~~~~~g~~~-~l~v~~l~~TV~~LK~~I~~--~~gip~~~QrL~~~Gk~L~D~~t-----L~~y~I~~g~ 96 (111)
T 1we6_A 25 PGPATIRVSKPNENDGQFM-EITVQSLSENVGSLKEKIAG--EIQIPANKQKLSGKAGFLKDNMS-----LAHYNVGAGE 96 (111)
T ss_dssp CSCEEEEECCTTCSSSCCE-EEEESCSSSBHHHHHHHHHH--HTTCCTTTSEEECSSSBCCTTSB-----TTTTTCSSSC
T ss_pred CCcEEEEEEecccCCCcEE-EEEecCCCCcHHHHHHHHHH--HHCCCHHHeEEEECCEECCCCCc-----HHHCCCCCCC
Confidence 46799999998 78777 899998 9999999999999 99999999999999999988888 9999999999
Q ss_pred EEEEEEecCC
Q 034173 83 NINISLFNLD 92 (102)
Q Consensus 83 ti~l~~~~~~ 92 (102)
+|||+++-+.
T Consensus 97 ~l~l~~r~~G 106 (111)
T 1we6_A 97 ILTLSLRERS 106 (111)
T ss_dssp EEEEECSSCC
T ss_pred EEEEEEEcCC
Confidence 9999998764
No 47
>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.81 E-value=1.7e-19 Score=122.90 Aligned_cols=84 Identities=13% Similarity=0.223 Sum_probs=72.6
Q ss_pred CCCCCcEEEEEEcCCCCCceEEEecCCCcHHHHHHHHHhc---cCCCCCC--CceEEEeCCeecCCCCCCCCCCccccCC
Q 034173 4 GEISESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATS---SANHLPI--ENLRLVFRGKVLDDTQDDDDRDDVYLQL 78 (102)
Q Consensus 4 ~~~~~~i~I~vK~~~~~~~~~l~v~~~~TV~~LK~~Ia~~---~~~~ip~--~~qrLi~~Gk~L~D~~t~~~~~L~~~~I 78 (102)
++..+.|+|+||+++|+.+..+++++++||.+||++|++. .+.++|+ ++|||||+||+|+|+.+ |++|+|
T Consensus 11 ~~~~~~~~i~~kt~~G~~i~~l~v~psdTV~~lK~kI~~~~p~dkegiP~~~~qQrLIy~GK~LeD~~T-----Lsdy~I 85 (126)
T 1se9_A 11 AEVHNQLEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISAGKVLENSKT-----VKDYRS 85 (126)
T ss_dssp CSSCCCEEEEEEETTSCEEEEEEECTTCBHHHHHHHHHHHSCTTCSSSCCSGGGEEEEETTEECCTTSB-----GGGGSC
T ss_pred hhhcccEEEEEEECCCCEEEeeecCccCHHHHHHHHHHhhcccccccCCCChhhEEEEECCeECcCCCc-----HHHcCC
Confidence 4566889999999999888669999999999999999431 1678886 89999999999998888 999999
Q ss_pred CCC------CEEEEEEecCC
Q 034173 79 SNG------GNINISLFNLD 92 (102)
Q Consensus 79 ~~g------~ti~l~~~~~~ 92 (102)
++| .|+||+++.+.
T Consensus 86 ~~~~~~~~v~tmhlVlrl~g 105 (126)
T 1se9_A 86 PVSNLAGAVTTMHVIIQAPV 105 (126)
T ss_dssp CTTSCTTCCEEEEEEECCCS
T ss_pred CcCCccCCcEEEEEEeccCC
Confidence 999 57899887663
No 48
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.81 E-value=6.4e-20 Score=119.52 Aligned_cols=79 Identities=19% Similarity=0.224 Sum_probs=70.3
Q ss_pred CCcEEEEEEcCCC----CCceEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEeCCeecCCC-CCCCCCCccccCCCCC
Q 034173 7 SESVEITVKTIGP----APPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDT-QDDDDRDDVYLQLSNG 81 (102)
Q Consensus 7 ~~~i~I~vK~~~~----~~~~~l~v~~~~TV~~LK~~Ia~~~~~~ip~~~qrLi~~Gk~L~D~-~t~~~~~L~~~~I~~g 81 (102)
+..|+|+||++.+ +.+ .++|++++||.+||++|++ ..++|+++|||+|+|+.|+|+ .+ |++|+|++|
T Consensus 5 ~~~m~I~Vk~~~~~~~~~~~-~i~v~~~~TV~~LK~~I~~--~~gip~~~qrL~~~gk~L~D~~~t-----L~~ygI~~g 76 (102)
T 1v5o_A 5 SSGMLITVYCVRRDLTEVTF-SLQVNPDFELSNFRVLCEL--ESGVPAEEAQIVYMEQLLTDDHCS-----LGSYGLKDG 76 (102)
T ss_dssp SCCEEEEEEECCCCCCCCEE-EEEECTTCBHHHHHHHHHH--HTCCCGGGBCEEETTEEECCSSSB-----HHHHTCCTT
T ss_pred CCeEEEEEEECCCCcCceEE-EEEcCCCCCHHHHHHHHHH--HHCcChHHeEEEECCEECCCCccc-----HHHCCCCCC
Confidence 3569999999865 455 8999999999999999999 999999999999999999866 56 999999999
Q ss_pred CEEEEEEecCCC
Q 034173 82 GNINISLFNLDD 93 (102)
Q Consensus 82 ~ti~l~~~~~~~ 93 (102)
++|||+++....
T Consensus 77 ~~l~l~~~~~gg 88 (102)
T 1v5o_A 77 DMVVLLQKDNVG 88 (102)
T ss_dssp EEEEECBCCCCC
T ss_pred CEEEEEECCCCC
Confidence 999999887644
No 49
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=99.81 E-value=1e-19 Score=128.43 Aligned_cols=74 Identities=23% Similarity=0.337 Sum_probs=70.6
Q ss_pred EEEEEEcCCCCCceEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEeCCeecCCCCCCCCCCccccCCCCCCEEEEEEe
Q 034173 10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGGNINISLF 89 (102)
Q Consensus 10 i~I~vK~~~~~~~~~l~v~~~~TV~~LK~~Ia~~~~~~ip~~~qrLi~~Gk~L~D~~t~~~~~L~~~~I~~g~ti~l~~~ 89 (102)
|+|+||+++|+.+ .++|++++||.+||++|++ +.++|+++|||+|+|+.|+|+.+ |++|+|++|++||++++
T Consensus 1 MqI~Vk~~~Gk~~-~l~v~~~~TV~~LK~~I~~--~~gip~~~QrLi~~Gk~L~D~~t-----L~~y~I~~gstI~Lvlr 72 (169)
T 3l0w_B 1 MQIFVKTLTGKTI-TLEVESSDTIDNVKSKIQD--KEGIPPDQQRLIFAGKQLEDGRT-----LSDYNIQKESTLHLVLR 72 (169)
T ss_dssp CEEEEEETTSCEE-EEECCTTCBHHHHHHHHHH--HHCCCTTTEEEEETTEECCTTSB-----GGGGTCCTTCEEEEEEC
T ss_pred CEEEEEeCCCCEE-EEEeCCCCCHHHHHHHHHH--HHCcCHHHEEEEECCccccCcCc-----HHHcCCCCCCEEEEEEE
Confidence 7999999999988 8999999999999999999 99999999999999999988888 99999999999999998
Q ss_pred cC
Q 034173 90 NL 91 (102)
Q Consensus 90 ~~ 91 (102)
-+
T Consensus 73 l~ 74 (169)
T 3l0w_B 73 LR 74 (169)
T ss_dssp CC
T ss_pred ec
Confidence 65
No 50
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=99.81 E-value=1.7e-19 Score=119.07 Aligned_cols=76 Identities=21% Similarity=0.313 Sum_probs=71.5
Q ss_pred CcEEEEEEcCCCCCceEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEeCCeecCCCCCCCCCCccccCCCCCCEEEEE
Q 034173 8 ESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGGNINIS 87 (102)
Q Consensus 8 ~~i~I~vK~~~~~~~~~l~v~~~~TV~~LK~~Ia~~~~~~ip~~~qrLi~~Gk~L~D~~t~~~~~L~~~~I~~g~ti~l~ 87 (102)
.+|+|+||+.+|+.+ .++|++++||.+||++|++ ..++|+++|||+|+|+.|.|+.+ |++|+|++|++|||+
T Consensus 34 ~~m~I~Vk~~~g~~~-~l~v~~~~TV~~LK~~I~~--~~gip~~~qrLi~~Gk~L~D~~t-----L~~~gI~~gs~I~l~ 105 (111)
T 2ojr_A 34 LAMQIFVKTLTGKTI-TLEVEPSDTIENVKAKIQD--KEGIPPDQQRLIFAGKQLEDGRT-----LSDYNIQKESTLHLV 105 (111)
T ss_dssp SCEEEEEECSSSCEE-EEEECTTCBHHHHHHHHHH--HHCCCTTTEEEEETTEECCSSCB-----TTTTTCCTTCEEEEE
T ss_pred CeEEEEEEcCCCCEE-EEEeCCCCCHHHHHHHHHH--HHCcCcccEEEEECCEECCCCCc-----HHHcCCCCCCEEEEE
Confidence 479999999999887 8999999999999999999 99999999999999999988877 999999999999999
Q ss_pred EecC
Q 034173 88 LFNL 91 (102)
Q Consensus 88 ~~~~ 91 (102)
++-+
T Consensus 106 ~rl~ 109 (111)
T 2ojr_A 106 LRLR 109 (111)
T ss_dssp ECCC
T ss_pred EeCC
Confidence 8865
No 51
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.81 E-value=1.7e-20 Score=122.53 Aligned_cols=75 Identities=25% Similarity=0.440 Sum_probs=67.4
Q ss_pred CcEEEEEEcCCCCCceEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEeCCeecCCCCCCCCCCccccCCCCCCEEEEE
Q 034173 8 ESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGGNINIS 87 (102)
Q Consensus 8 ~~i~I~vK~~~~~~~~~l~v~~~~TV~~LK~~Ia~~~~~~ip~~~qrLi~~Gk~L~D~~t~~~~~L~~~~I~~g~ti~l~ 87 (102)
.+|+|+||+ +|+.+ .++|++++||.+||++|++ ..++|+++|||+|+|+.|+|+.+ |++|||++|++|+|+
T Consensus 27 m~i~I~Vk~-~g~~~-~l~v~~~~TV~~LK~~I~~--~~gip~~~QrLi~~Gk~L~D~~t-----L~~~gI~~g~tI~lv 97 (101)
T 3m63_B 27 MSLNIHIKS-GQDKW-EVNVAPESTVLQFKEAINK--ANGIPVANQRLIYSGKILKDDQT-----VESYHIQDGHSVHLV 97 (101)
T ss_dssp --CCEEEEC-SSCCC-CBCCCTTSBHHHHHHHHHH--HHSCCSTTCCEEETTEECCTTSB-----TTTTTCCTTEEEEEC
T ss_pred cEEEEEEEE-CCEEE-EEEeCCCCCHHHHHHHHHH--HHCcChHHEEEEECCEECCCcCc-----HHHCCCCCCCEEEEE
Confidence 458899998 77777 8999999999999999999 99999999999999999988888 999999999999998
Q ss_pred EecC
Q 034173 88 LFNL 91 (102)
Q Consensus 88 ~~~~ 91 (102)
++.|
T Consensus 98 ~~~P 101 (101)
T 3m63_B 98 KSQP 101 (101)
T ss_dssp CCC-
T ss_pred eCCC
Confidence 7754
No 52
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.80 E-value=1.4e-19 Score=115.86 Aligned_cols=77 Identities=14% Similarity=0.209 Sum_probs=69.8
Q ss_pred CCcEEEEEEcCCCCCceEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEeCCeecCCC-CCCCCCCccccCCCCCCEEE
Q 034173 7 SESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDT-QDDDDRDDVYLQLSNGGNIN 85 (102)
Q Consensus 7 ~~~i~I~vK~~~~~~~~~l~v~~~~TV~~LK~~Ia~~~~~~ip~~~qrLi~~Gk~L~D~-~t~~~~~L~~~~I~~g~ti~ 85 (102)
.+.|+|+||+.+|+.+ .++|++++||.+||++|++ .. +++|||+|+|+.|+|+ .+ |++|+|++|++||
T Consensus 5 ~~~m~i~Vk~~~g~~~-~~~v~~~~TV~~LK~~i~~--~~---~~~qrLi~~Gk~L~D~~~t-----L~~y~i~~g~~i~ 73 (95)
T 1wia_A 5 SSGINVRLKFLNDTEE-LAVARPEDTVGTLKSKYFP--GQ---ESQMKLIYQGRLLQDPART-----LSSLNITNNCVIH 73 (95)
T ss_dssp CCSEEEEEEETTTEEE-EEEECSSSBHHHHHHHHSS--ST---TTTCEEEETTEECCCSSCB-----TTTTTCCTTEEEE
T ss_pred CCeEEEEEEeCCCCEE-EEEECCCCcHHHHHHHHHh--hC---cCcEEEEECCEEccCCcCC-----HHHcCCCCCCEEE
Confidence 4579999999999887 8999999999999999987 65 9999999999999887 77 9999999999999
Q ss_pred EEEecCCCc
Q 034173 86 ISLFNLDDL 94 (102)
Q Consensus 86 l~~~~~~~~ 94 (102)
|+++.+...
T Consensus 74 l~~~~~~~~ 82 (95)
T 1wia_A 74 CHRSPPGAA 82 (95)
T ss_dssp EECCCCCCC
T ss_pred EEECCCCCC
Confidence 999877543
No 53
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.80 E-value=2.9e-20 Score=123.07 Aligned_cols=78 Identities=17% Similarity=0.118 Sum_probs=69.3
Q ss_pred CcEEEEEEcCCCCCceEEEecCCCcHHHHHHHHHhccCCCCCC---------------CceEEEeCCeecC-CCCCCCCC
Q 034173 8 ESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPI---------------ENLRLVFRGKVLD-DTQDDDDR 71 (102)
Q Consensus 8 ~~i~I~vK~~~~~~~~~l~v~~~~TV~~LK~~Ia~~~~~~ip~---------------~~qrLi~~Gk~L~-D~~t~~~~ 71 (102)
..|+|+||+++|+.+ +++|++++||.+||++|++ +.++|+ ++|||||+|+.|. |+.+
T Consensus 6 ~~M~I~Vk~l~g~~~-~v~V~~~~TV~dLK~~I~~--~~~i~~~~q~g~~~isw~~~w~q~~Li~~Gk~L~dD~~t---- 78 (105)
T 1v2y_A 6 SGMTVRVCKMDGEVM-PVVVVQNATVLDLKKAIQR--YVQLKQEREGGVQHISWSYVWRTYHLTSAGEKLTEDRKK---- 78 (105)
T ss_dssp CSEEEEEECSSSCEE-EEEECTTCBHHHHHHHHHH--HHHHHHHHTTCCCCCCHHHHHTTEEEESSSCEECCSSSB----
T ss_pred CcEEEEEEecCCCEE-EEEECCCChHHHHHHHHHH--HhCCCcccccCcceeeeeecceeEEEEeCCcCccCCcCC----
Confidence 459999999999999 9999999999999999998 888877 4579999999996 4466
Q ss_pred CccccCCCCCCEEEEEEecCCC
Q 034173 72 DDVYLQLSNGGNINISLFNLDD 93 (102)
Q Consensus 72 ~L~~~~I~~g~ti~l~~~~~~~ 93 (102)
|++|||++|++|||+++-...
T Consensus 79 -L~dygI~~g~~l~lv~~lr~~ 99 (105)
T 1v2y_A 79 -LRDYGIRNRDEVSFIKKLGQK 99 (105)
T ss_dssp -HHHHTCCSSEEEEEEECSCSC
T ss_pred -HHHcCCCCCCEEEEEehhccC
Confidence 999999999999999876543
No 54
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.80 E-value=1.3e-19 Score=115.46 Aligned_cols=79 Identities=22% Similarity=0.272 Sum_probs=69.4
Q ss_pred CCcEEEEEEcCCCCCceEEEecCC-----CcHHHHHHHHHhccCCCCCCCceEEEeCCeecCC-CCCCCCCCccccCCCC
Q 034173 7 SESVEITVKTIGPAPPSRLSVSSP-----IKVRDLRKLIATSSANHLPIENLRLVFRGKVLDD-TQDDDDRDDVYLQLSN 80 (102)
Q Consensus 7 ~~~i~I~vK~~~~~~~~~l~v~~~-----~TV~~LK~~Ia~~~~~~ip~~~qrLi~~Gk~L~D-~~t~~~~~L~~~~I~~ 80 (102)
+.+|+|+||+. ++.+ .++++++ +||.+||++|++ ..++|+++|||+|+|+.|+| +.+ |++|+|++
T Consensus 5 ~~~~~v~Vk~~-~~~~-~i~v~~~~~~~~~TV~~LK~~i~~--~~gip~~~qrL~~~Gk~L~D~~~~-----L~~~~i~~ 75 (92)
T 1wxv_A 5 SSGLTVTVTHS-NEKH-DLHVTSQQGSSEPVVQDLAQVVEE--VIGVPQSFQKLIFKGKSLKEMETP-----LSALGIQD 75 (92)
T ss_dssp CSSEEEEEECS-SSEE-EEEECCCSSSSSCBHHHHHHHHHH--HTCCCTTTCEEEETTEEECCSSSB-----HHHHTCCS
T ss_pred CCeEEEEEEEC-CEEE-EEEECCCcCcccCcHHHHHHHHHH--HHCcCHHHEEEEECCeecCCCccc-----HHHCCCCC
Confidence 45799999994 6666 8999995 999999999999 99999999999999999987 446 99999999
Q ss_pred CCEEEEEEecCCCc
Q 034173 81 GGNINISLFNLDDL 94 (102)
Q Consensus 81 g~ti~l~~~~~~~~ 94 (102)
|++|||+.......
T Consensus 76 g~~i~l~~~~~~~~ 89 (92)
T 1wxv_A 76 GCRVMLIGKKNSGP 89 (92)
T ss_dssp SEEEEEESCCSCSC
T ss_pred CCEEEEEecCCCCC
Confidence 99999998776543
No 55
>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.80 E-value=3.6e-19 Score=119.63 Aligned_cols=79 Identities=14% Similarity=0.192 Sum_probs=67.6
Q ss_pred CCcEEEEEEcCCCCCceEEEecCCCcHHHHHHHHHhcc----CCC--CCCCceEEEeCCeecCCCCCCCCCCccccCCCC
Q 034173 7 SESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSS----ANH--LPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSN 80 (102)
Q Consensus 7 ~~~i~I~vK~~~~~~~~~l~v~~~~TV~~LK~~Ia~~~----~~~--ip~~~qrLi~~Gk~L~D~~t~~~~~L~~~~I~~ 80 (102)
.+.|+|+||++.|+.+ +++|++++||.+||++|++.. +.+ +|+++|||||.||+|+|+.+ |++|+|+.
T Consensus 14 ~~~m~I~vKtl~G~t~-~lev~~s~TV~~lK~kI~~~~p~dwke~~p~p~~qqrLIy~GK~LeD~~T-----L~~y~I~~ 87 (116)
T 1wgh_A 14 ADMINLRLILVSGKTK-EFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVT-----LGALKLPF 87 (116)
T ss_dssp SSSEEEEEECSSSCEE-EEEECTTCBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEEETTEEECSSCB-----TTTTTCCS
T ss_pred CCeEEEEEEeCCCCEE-EEEECCcCHHHHHHHHHHHhcccccccCCCCChHHEEEEECCcCCCCCCc-----HHHcCCCC
Confidence 4579999999999887 999999999999999998721 234 47999999999999998888 99999987
Q ss_pred CC--EEEEEEecC
Q 034173 81 GG--NINISLFNL 91 (102)
Q Consensus 81 g~--ti~l~~~~~ 91 (102)
++ +|||+++.+
T Consensus 88 ~~~~tlhLvlr~~ 100 (116)
T 1wgh_A 88 GKTTVMHLVARET 100 (116)
T ss_dssp SCEEEEEEEECSS
T ss_pred CCceEEEEEccCC
Confidence 75 678887655
No 56
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=99.80 E-value=2.1e-19 Score=119.50 Aligned_cols=78 Identities=19% Similarity=0.281 Sum_probs=72.8
Q ss_pred CcEEEEEEcCCCCCceEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEeCCeecCCCCCCCCCCccccCCCCCCEEEEE
Q 034173 8 ESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGGNINIS 87 (102)
Q Consensus 8 ~~i~I~vK~~~~~~~~~l~v~~~~TV~~LK~~Ia~~~~~~ip~~~qrLi~~Gk~L~D~~t~~~~~L~~~~I~~g~ti~l~ 87 (102)
...+|+||+++|+.+ .++|++++||.+||++|++ ..++|+++|||+|+|+.|+|+.+ |++|+|++|++|+|+
T Consensus 8 ~~~~i~vk~l~G~~~-~l~v~~~~TV~~LK~~I~~--~~gip~~~qrLi~~Gk~L~D~~t-----L~~ygI~~gstI~l~ 79 (114)
T 2kdi_A 8 GEFQIFAKTLTGKTI-TLEVESSDTIDNVKSKIQD--KEGIPPDQQRLIWAGKQLEDGRT-----LSDYNIQRESTLHLV 79 (114)
T ss_dssp CCCEEEEEETTCCEE-EEECCTTCBHHHHHHHHHH--HHCCCGGGEEEEETTEECCTTCB-----TTTTTCCSSCEEEEE
T ss_pred CcEEEEEEeCCCcEE-EEEECCCCcHHHHHHHHHH--HHCcChHHEEEEECCEECCCCCc-----HHHCCCCCCCEEEEE
Confidence 468999999999888 8999999999999999999 99999999999999999988888 999999999999999
Q ss_pred EecCCC
Q 034173 88 LFNLDD 93 (102)
Q Consensus 88 ~~~~~~ 93 (102)
++.+..
T Consensus 80 ~~~~GG 85 (114)
T 2kdi_A 80 LRLRGG 85 (114)
T ss_dssp ECCCSS
T ss_pred EEcCCC
Confidence 987644
No 57
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.79 E-value=2.9e-19 Score=117.34 Aligned_cols=77 Identities=18% Similarity=0.287 Sum_probs=68.8
Q ss_pred CcEEEEEEcCCC---CCceEEEecC---------CCcHHHHHHHHHhccCC--CCCCCc-eEEEeCCeecCCCCCCCCCC
Q 034173 8 ESVEITVKTIGP---APPSRLSVSS---------PIKVRDLRKLIATSSAN--HLPIEN-LRLVFRGKVLDDTQDDDDRD 72 (102)
Q Consensus 8 ~~i~I~vK~~~~---~~~~~l~v~~---------~~TV~~LK~~Ia~~~~~--~ip~~~-qrLi~~Gk~L~D~~t~~~~~ 72 (102)
..|+|+||+.++ +.+ .+++++ ++||.+||++|++ .. ++|+++ |||+|+|+.|+|+.+
T Consensus 11 ~~~~i~Vk~~~~~~~~~~-~l~v~~~~~~~v~~~~~TV~~LK~~i~~--~~~~gip~~~~qrLi~~Gk~L~D~~t----- 82 (107)
T 1x1m_A 11 SDWHLAVKLADQPLAPKS-ILQLPETELGEYSLGGYSISFLKQLIAG--KLQESVPDPELIDLIYCGRKLKDDQT----- 82 (107)
T ss_dssp CSCCEEEEETTCTTSCCE-EECCCCCSSCSSCCCCCBHHHHHHHHHH--HCTTTCCCSSSEEEEETTEECCTTCB-----
T ss_pred CceEEEEEeCCCCCccEE-EEEecCccccccCcccCCHHHHHHHHHH--HhccCCChhhcEEEEECCeECCCCCc-----
Confidence 459999999988 666 788554 5999999999998 88 999999 999999999988888
Q ss_pred ccccCCCCCCEEEEEEecCC
Q 034173 73 DVYLQLSNGGNINISLFNLD 92 (102)
Q Consensus 73 L~~~~I~~g~ti~l~~~~~~ 92 (102)
|++|+|++|++|||+++.+.
T Consensus 83 L~~y~i~~g~~i~lv~~~~~ 102 (107)
T 1x1m_A 83 LDFYGIQPGSTVHVLRKSWS 102 (107)
T ss_dssp HHHHTCCTTCEEEEEESSCC
T ss_pred HHHcCCCCCCEEEEEeCCCC
Confidence 99999999999999987753
No 58
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=99.79 E-value=3.1e-19 Score=124.84 Aligned_cols=79 Identities=20% Similarity=0.311 Sum_probs=72.5
Q ss_pred CCcEEEEEEcCCCCCceEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEeCCeecCCCCCCCCCCccccCCCCCCEEEE
Q 034173 7 SESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGGNINI 86 (102)
Q Consensus 7 ~~~i~I~vK~~~~~~~~~l~v~~~~TV~~LK~~Ia~~~~~~ip~~~qrLi~~Gk~L~D~~t~~~~~L~~~~I~~g~ti~l 86 (102)
+..|+|+||+.+|+.+ .++|++++||.+||++|++ ..++|+++|||+|+|+.|+|+.+ |++|+|++|++|++
T Consensus 18 ~~~m~i~Vk~~~g~~~-~l~v~~~~tV~~lK~~I~~--~~gip~~~QrL~~~g~~L~d~~t-----L~~~~i~~~~~l~l 89 (172)
T 3u30_A 18 GSHMQIFVKTLTGKTI-TLEVEPSDTIENVKAKIQD--KEGIPPDQQRLIFAGKQLEDGRT-----LSDYNIQKESTLHL 89 (172)
T ss_dssp -CCEEEEEEETTTEEE-EEEECTTCBHHHHHHHHHH--HHCCCGGGEEEEETTEECCTTCB-----TGGGTCCTTCEEEE
T ss_pred CCcEEEEEEeCCCCEE-EEEECCCCcHHHHHHHHHH--HHCcChHHEEEEECCccccccCC-----HhHcCCcccceeee
Confidence 3579999999999988 8999999999999999999 99999999999999999988888 99999999999999
Q ss_pred EEecCCC
Q 034173 87 SLFNLDD 93 (102)
Q Consensus 87 ~~~~~~~ 93 (102)
+++-++.
T Consensus 90 ~~~~~gg 96 (172)
T 3u30_A 90 VLRLRGG 96 (172)
T ss_dssp EECCCCC
T ss_pred eeccccc
Confidence 9865533
No 59
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=99.79 E-value=3.6e-19 Score=122.69 Aligned_cols=73 Identities=22% Similarity=0.240 Sum_probs=69.5
Q ss_pred EEEEEEcCCCCCceEEEecCCCcHHHHHHHHHhccCCCCCCCceEEE-e-CCeecCCCCCCCCCCccccCCCCCCEEEEE
Q 034173 10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLV-F-RGKVLDDTQDDDDRDDVYLQLSNGGNINIS 87 (102)
Q Consensus 10 i~I~vK~~~~~~~~~l~v~~~~TV~~LK~~Ia~~~~~~ip~~~qrLi-~-~Gk~L~D~~t~~~~~L~~~~I~~g~ti~l~ 87 (102)
|+|+||+++|+.+ .++|++++||.+||++|++ ..|+|+++|||+ | +|+.|+|+.+ |++|+|++|++||++
T Consensus 3 m~i~vk~~~g~~~-~l~v~~~~tV~~lK~~I~~--~~gip~~~QrL~~~~~g~~L~d~~t-----L~~y~i~~~~~l~l~ 74 (159)
T 3rt3_B 3 WDLTVKMLAGNEF-QVSLSSSMSVSELKAQITQ--KIGVHAFQQRLAVHPSGVALQDRVP-----LASQGLGPGSTVLLV 74 (159)
T ss_dssp CEEEEEETTSCEE-EEECCTTCCHHHHHHHHHH--HHCCCGGGEEEEEETTCCBCCTTSC-----GGGGTCCTTCEEEEE
T ss_pred eEEEEEECCCCEE-EEEeCCCCcHHHHHHHHHH--HhCCCHHHEEEEEcCCCCCCCCCCC-----HHHcCCCCCCEEEEE
Confidence 8999999999988 8999999999999999999 999999999999 9 7999988888 999999999999999
Q ss_pred Eec
Q 034173 88 LFN 90 (102)
Q Consensus 88 ~~~ 90 (102)
++.
T Consensus 75 ~~~ 77 (159)
T 3rt3_B 75 VDK 77 (159)
T ss_dssp ECC
T ss_pred ccC
Confidence 884
No 60
>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}
Probab=99.79 E-value=7.1e-19 Score=119.47 Aligned_cols=79 Identities=14% Similarity=0.194 Sum_probs=68.2
Q ss_pred CCcEEEEEEcCCCCCceEEEecCCCcHHHHHHHHHhcc----CCCC--CCCceEEEeCCeecCCCCCCCCCCccccCCCC
Q 034173 7 SESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSS----ANHL--PIENLRLVFRGKVLDDTQDDDDRDDVYLQLSN 80 (102)
Q Consensus 7 ~~~i~I~vK~~~~~~~~~l~v~~~~TV~~LK~~Ia~~~----~~~i--p~~~qrLi~~Gk~L~D~~t~~~~~L~~~~I~~ 80 (102)
...|+|+||+++|+.+ +++|++++||.+||++|++.. +.++ |+++|||||+||+|+|+.+ |++|+|+.
T Consensus 15 ~~~m~I~vktl~G~~~-~lev~~s~TV~~lK~~I~~~~p~dwke~ip~~~~~qrLIy~GK~LeD~~T-----L~~y~I~~ 88 (125)
T 2gow_A 15 ADMINLRLILVSGKTK-EFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVT-----LGALKLPF 88 (125)
T ss_dssp TTCEEEEEECTTSCEE-EEEECTTSBHHHHHHHHHSSCCCSCCCCTTCCGGGEEEESSSSEEESSCB-----TGGGCCCT
T ss_pred CCeEEEEEEeCCCCEE-EEEeCCccHHHHHHHHHHHHCCcccccCCCCChHHEEEEECCcCCCCCCc-----HHHcCCCC
Confidence 3569999999999877 999999999999999998621 3466 5999999999999998888 99999998
Q ss_pred CC--EEEEEEecC
Q 034173 81 GG--NINISLFNL 91 (102)
Q Consensus 81 g~--ti~l~~~~~ 91 (102)
|+ +|||+++.+
T Consensus 89 ~~~~tlhlv~r~~ 101 (125)
T 2gow_A 89 GKTTVMHLVARET 101 (125)
T ss_dssp TSEEEEEEEECSC
T ss_pred CCceEEEEEecCC
Confidence 87 678888765
No 61
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A
Probab=99.79 E-value=1.3e-19 Score=122.20 Aligned_cols=76 Identities=14% Similarity=0.173 Sum_probs=66.2
Q ss_pred EEEEEEcCCCCCceEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEeCCeecCCCCCCCCCCccccCCC-------CCC
Q 034173 10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLS-------NGG 82 (102)
Q Consensus 10 i~I~vK~~~~~~~~~l~v~~~~TV~~LK~~Ia~~~~~~ip~~~qrLi~~Gk~L~D~~t~~~~~L~~~~I~-------~g~ 82 (102)
|.++|+...++....++|.+++||.+||++|++ +.|+|+++|||+|+||.|+|+.+ |++|||+ +++
T Consensus 1 M~mfl~ir~~ktti~lev~~sdTV~~lK~kI~~--~egIP~~qQrLi~~Gk~LeD~~T-----Lsdy~I~~~~a~~q~~s 73 (118)
T 2fnj_B 1 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEG--ILKRPPEEQRLYKDDQLLDDGKT-----LGECGFTSQTARPQAPA 73 (118)
T ss_dssp CEEEEEEEEBTEEEEEEEETTSBHHHHHHHHHH--HHCCCGGGEEEEETTEECCTTSB-----HHHHTCCTTTSBTTBCE
T ss_pred CcEEEEEecCCEEEEEEeCCcChHHHHHHHHHH--HhCCCHHHeEEEECCeECCCCCC-----HHHcCcccccccCCCCC
Confidence 456666666664338999999999999999999 99999999999999999988888 9999999 799
Q ss_pred EEEEEEecCCC
Q 034173 83 NINISLFNLDD 93 (102)
Q Consensus 83 ti~l~~~~~~~ 93 (102)
||||+++ .++
T Consensus 74 tL~L~lr-~~g 83 (118)
T 2fnj_B 74 TVGLAFR-ADD 83 (118)
T ss_dssp EEEEEEB-SSS
T ss_pred EEEEEec-CCC
Confidence 9999999 443
No 62
>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=5.1e-19 Score=113.19 Aligned_cols=72 Identities=14% Similarity=0.164 Sum_probs=63.8
Q ss_pred cEEEEEEcCCCCCce-EE-EecCCCcHHHHHHHHHhccCCCCCCCceEEEeC--CeecCCCCCCCCCCccccCCCCCCEE
Q 034173 9 SVEITVKTIGPAPPS-RL-SVSSPIKVRDLRKLIATSSANHLPIENLRLVFR--GKVLDDTQDDDDRDDVYLQLSNGGNI 84 (102)
Q Consensus 9 ~i~I~vK~~~~~~~~-~l-~v~~~~TV~~LK~~Ia~~~~~~ip~~~qrLi~~--Gk~L~D~~t~~~~~L~~~~I~~g~ti 84 (102)
.|+|+||++.|+.+. .+ +|++++||.+||++|++ .+.++||++|||+|. |++|+|+.+ |++|+|++|++|
T Consensus 10 ~M~I~Vk~~~g~~~~~~l~~v~~~~TV~~lK~~I~~-~~~~i~~~~QrL~~~~~Gk~L~D~~t-----L~~y~i~~~stl 83 (88)
T 2dzj_A 10 HYEVEILDAKTREKLCFLDKVEPHATIAEIKNLFTK-THPQWYPARQSLRLDPKGKSLKDEDV-----LQKLPVGTTATL 83 (88)
T ss_dssp CEEEEEEESSSCCCCEEEEEECSSCBHHHHHHHHHH-HCSSSCTTTCCEESSTTSCCCCTTCB-----TTTSSCCSEEEE
T ss_pred EEEEEEECCCCCEEeeEEeEcCCCCcHHHHHHHHHH-HhcCCChHHeEEEecCCCcCcCCCCC-----HHHcCCCCCCEE
Confidence 499999999987762 47 99999999999999987 237899999999976 999988888 999999999998
Q ss_pred EE
Q 034173 85 NI 86 (102)
Q Consensus 85 ~l 86 (102)
|+
T Consensus 84 ~~ 85 (88)
T 2dzj_A 84 YF 85 (88)
T ss_dssp EE
T ss_pred EE
Confidence 86
No 63
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=99.78 E-value=1.8e-19 Score=115.04 Aligned_cols=75 Identities=23% Similarity=0.227 Sum_probs=67.9
Q ss_pred CCcEEEEEEcCCCCCceEE-EecCCCcHHHHHHHHHhccCCCCCCCceEEE---eCCeecCCCCCCCCCCccccCCCCCC
Q 034173 7 SESVEITVKTIGPAPPSRL-SVSSPIKVRDLRKLIATSSANHLPIENLRLV---FRGKVLDDTQDDDDRDDVYLQLSNGG 82 (102)
Q Consensus 7 ~~~i~I~vK~~~~~~~~~l-~v~~~~TV~~LK~~Ia~~~~~~ip~~~qrLi---~~Gk~L~D~~t~~~~~L~~~~I~~g~ 82 (102)
+++|+|+||. +++.+ .+ +|++++||.+||++|++ ..++|+++|||+ |+|+.|+|+.+ |++|+|++|+
T Consensus 5 ~~~m~i~Vk~-~g~~~-~i~~v~~~~TV~~lK~~I~~--~~gip~~~QkLi~~k~~Gk~L~D~~~-----L~~~~i~~g~ 75 (90)
T 1v5t_A 5 SSGLPIIVKW-GGQEY-SVTTLSEDDTVLDLKQFLKT--LTGVLPERQKLLGLKVKGKPAENDVK-----LGALKLKPNT 75 (90)
T ss_dssp CCSCCEEEEE-TTEEE-EECSCCSSSBHHHHHHHHHH--HTCCCTTTCEEESCEETTEECCTTSB-----HHHHTCCTTE
T ss_pred CceEEEEEEE-CCEEE-EEEEeCCCCCHHHHHHHHHH--HHCcCHHHeEEEeeccCCcCcCCCCC-----HHHcCCCCCC
Confidence 3569999997 66666 88 99999999999999999 999999999999 99999988878 9999999999
Q ss_pred EEEEEEec
Q 034173 83 NINISLFN 90 (102)
Q Consensus 83 ti~l~~~~ 90 (102)
+|+|+...
T Consensus 76 ~l~l~~~~ 83 (90)
T 1v5t_A 76 KIMMMGTR 83 (90)
T ss_dssp EEEEECCC
T ss_pred EEEEEecC
Confidence 99987654
No 64
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.78 E-value=2.5e-19 Score=115.96 Aligned_cols=76 Identities=14% Similarity=0.131 Sum_probs=67.0
Q ss_pred CCcEEEEEEcCCCCCceEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEeCCeecCCCCCCCCCCccccCCCCCCEEEE
Q 034173 7 SESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGGNINI 86 (102)
Q Consensus 7 ~~~i~I~vK~~~~~~~~~l~v~~~~TV~~LK~~Ia~~~~~~ip~~~qrLi~~Gk~L~D~~t~~~~~L~~~~I~~g~ti~l 86 (102)
+++|+|+||. .++.+..++|++++||.+||++|++ ..++|+++|||+|+|+.|+|+ + |++|+|++|++|+|
T Consensus 5 ~~~m~i~Vk~-~g~~~~~l~v~~~~TV~~lK~~I~~--~tgip~~~QkLi~~Gk~L~D~-t-----L~~~~I~~g~~i~l 75 (96)
T 1wgg_A 5 SSGYSVTVKW-GKEKFEGVELNTDEPPMVFKAQLFA--LTGVQPARQKVMVKGGTLKDD-D-----WGNIKMKNGMTVLM 75 (96)
T ss_dssp CCEEEEEEEE-TTEEEEEEEEESSSCHHHHHHHHHH--HTCCCTTTSCCEETTEECCSS-C-----CCSCCCCSSCEEEC
T ss_pred CcEEEEEEEE-CCEEEEEEEECCCCcHHHHHHHHHH--HHCcCHHHeEEEECCcCCCCC-C-----HHHCCCCCCCEEEE
Confidence 4679999996 5555513899999999999999999 999999999999999999887 7 99999999999998
Q ss_pred EEecC
Q 034173 87 SLFNL 91 (102)
Q Consensus 87 ~~~~~ 91 (102)
+....
T Consensus 76 ~~~~~ 80 (96)
T 1wgg_A 76 MGSAD 80 (96)
T ss_dssp CCCCC
T ss_pred Eecch
Confidence 77553
No 65
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=99.78 E-value=5.9e-19 Score=116.88 Aligned_cols=75 Identities=15% Similarity=0.176 Sum_probs=68.0
Q ss_pred cEEEEEEcCCC--CCceEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEeCCeecCCCCCCCCCCccccCC-CCCCEEE
Q 034173 9 SVEITVKTIGP--APPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQL-SNGGNIN 85 (102)
Q Consensus 9 ~i~I~vK~~~~--~~~~~l~v~~~~TV~~LK~~Ia~~~~~~ip~~~qrLi~~Gk~L~D~~t~~~~~L~~~~I-~~g~ti~ 85 (102)
+|+|+|++..+ ..+ +++|.+++||.+||++|++ +.|+||++|||+|+|+.++|+.+ |++||| ++|+++|
T Consensus 24 ~l~v~v~d~~s~~~~i-~l~V~ps~TV~~LK~~I~~--k~Gipp~~QRli~ggkll~D~~T-----L~~ygI~~~G~t~h 95 (105)
T 4dbg_A 24 RLWVSVEDAQMHTVTI-WLTVRPDMTVASLKDMVFL--DYGFPPVLQQWVIGQRLARDQET-----LHSHGVRQNGDSAY 95 (105)
T ss_dssp EEEEEEEESSSCCEEE-EEEECTTCBHHHHHHHHHH--HHCCCGGGEEEEETTEEECTTCB-----TGGGTCCSTTCEEE
T ss_pred EEEEEEEccCCCCceE-EEEECCcChHHHHHHHHHH--HhCCCHHHEEEeccCeEccCcCc-----HHHcCCCCCCCEEE
Confidence 59999999875 344 8899999999999999999 99999999999999999988878 999999 5999999
Q ss_pred EEEecC
Q 034173 86 ISLFNL 91 (102)
Q Consensus 86 l~~~~~ 91 (102)
|.+..+
T Consensus 96 L~l~~~ 101 (105)
T 4dbg_A 96 LYLLSA 101 (105)
T ss_dssp EEECCC
T ss_pred EEEEec
Confidence 999775
No 66
>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*
Probab=99.78 E-value=3.2e-19 Score=120.31 Aligned_cols=74 Identities=11% Similarity=0.140 Sum_probs=68.0
Q ss_pred EEEEEEcCCCCCceEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEeCCeecCCCCCCCCCCccccCCCC-------CC
Q 034173 10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSN-------GG 82 (102)
Q Consensus 10 i~I~vK~~~~~~~~~l~v~~~~TV~~LK~~Ia~~~~~~ip~~~qrLi~~Gk~L~D~~t~~~~~L~~~~I~~-------g~ 82 (102)
|.+|++...++....+++.++.||.+||++|++ +.|+||++|||||+|+.|+|++| |++|||++ ++
T Consensus 1 m~vFl~Ikr~ktTI~ldve~sdTV~~lK~kI~~--~~giPp~qQrLI~~Gk~LeD~kT-----L~dy~I~~~ta~~q~~a 73 (118)
T 4ajy_B 1 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEG--ILKRPPDEQRLYKDDQLLDDGKT-----LGECGFTSQTARPQAPA 73 (118)
T ss_dssp CEEEEEEEEBTEEEEEEEETTSBHHHHHHHHHH--HHCCCGGGEEEEETTEECCTTSB-----TTTTTCCGGGSBTTBCE
T ss_pred CceEEEEecCCEEEEEEcCCCChHHHHHHHHHH--HHCCCHHHeEEEeCCeECCCcCC-----HHHcCCCcCcccCCCCC
Confidence 568888877775447899999999999999999 99999999999999999988888 99999999 99
Q ss_pred EEEEEEec
Q 034173 83 NINISLFN 90 (102)
Q Consensus 83 ti~l~~~~ 90 (102)
||||+++.
T Consensus 74 tl~Lvlr~ 81 (118)
T 4ajy_B 74 TVGLAFRA 81 (118)
T ss_dssp EEEEEECC
T ss_pred EEEEEEec
Confidence 99999996
No 67
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=99.77 E-value=5.8e-19 Score=127.14 Aligned_cols=77 Identities=21% Similarity=0.298 Sum_probs=72.3
Q ss_pred cEEEEEEcCCCCCceEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEeCCeecCCCCCCCCCCccccCCCCCCEEEEEE
Q 034173 9 SVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGGNINISL 88 (102)
Q Consensus 9 ~i~I~vK~~~~~~~~~l~v~~~~TV~~LK~~Ia~~~~~~ip~~~qrLi~~Gk~L~D~~t~~~~~L~~~~I~~g~ti~l~~ 88 (102)
.|+|+||+++|+.+ .++|++++||.+||++|++ ..++|+++|||+|+|+.|+|+.+ |++|+|++|++|||++
T Consensus 105 eMqI~VKtl~Gkt~-~l~V~~s~TV~~LK~kI~~--~~gIp~~~QrLi~~Gk~L~D~~t-----L~dygI~~gstI~Lvl 176 (189)
T 3q3f_A 105 GGQIFVKTLTGKTI-TLEVEPSDTIENVKAKIQD--KEGIPPDQQRLIFAGKQLEDGRT-----LSDYNIQKESTLHLVL 176 (189)
T ss_dssp CEEEEEECTTSCEE-EEEECTTCBHHHHHHHHHH--HHCCCGGGCCEEETTEECCTTCB-----GGGGTCCTTCEEEECC
T ss_pred ceeeeeecCCCCEE-EEEeCCCCcHHHHHHHHHh--ccCCCHHHEEEEECCEECCCCCC-----HHHCCCCCCCEEEEEE
Confidence 59999999999988 8999999999999999999 89999999999999999988888 9999999999999999
Q ss_pred ecCCC
Q 034173 89 FNLDD 93 (102)
Q Consensus 89 ~~~~~ 93 (102)
+-...
T Consensus 177 rlrGG 181 (189)
T 3q3f_A 177 RLRGG 181 (189)
T ss_dssp CCCCC
T ss_pred EcCCC
Confidence 86643
No 68
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=99.77 E-value=2.2e-20 Score=126.14 Aligned_cols=75 Identities=23% Similarity=0.333 Sum_probs=0.0
Q ss_pred EEEEEEcCCCCCceEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEeCCeecCCCCCCCCCCccccCCCCCCEEEEEEe
Q 034173 10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGGNINISLF 89 (102)
Q Consensus 10 i~I~vK~~~~~~~~~l~v~~~~TV~~LK~~Ia~~~~~~ip~~~qrLi~~Gk~L~D~~t~~~~~L~~~~I~~g~ti~l~~~ 89 (102)
|+|+||+.+|+.+ .++|++++||.+||++|++ ..++|+++|||+|+|+.|+|+.+ |++|+|++|++|+|+++
T Consensus 1 M~I~Vk~~~G~~~-~l~v~~~~TV~~LK~~I~~--~~gip~~~QrLi~~Gk~L~D~~t-----L~~~~I~~gsti~l~~r 72 (128)
T 3u5e_m 1 MQIFVKTLTGKTI-TLEVESSDTIDNVKSKIQD--KEGIPPDQQRLIFAGKQLEDGRT-----LSDYNIQKESTLHLVLR 72 (128)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CEEEEEeCCCCEE-EEEeCCCCCHHHHHHHHHH--HhCcChHHEEEEECCEECCCCCc-----hhhhccCCCCEEEEEEE
Confidence 7899999999988 8999999999999999998 99999999999999999988888 99999999999999998
Q ss_pred cCC
Q 034173 90 NLD 92 (102)
Q Consensus 90 ~~~ 92 (102)
.++
T Consensus 73 l~G 75 (128)
T 3u5e_m 73 LRG 75 (128)
T ss_dssp ---
T ss_pred cCC
Confidence 764
No 69
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=99.77 E-value=2.1e-18 Score=116.88 Aligned_cols=75 Identities=21% Similarity=0.325 Sum_probs=70.1
Q ss_pred EEEEEEcCCCCCceEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEeCCeecCCCCCCCCCCccccCCCCCCEEEEEEe
Q 034173 10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGGNINISLF 89 (102)
Q Consensus 10 i~I~vK~~~~~~~~~l~v~~~~TV~~LK~~Ia~~~~~~ip~~~qrLi~~Gk~L~D~~t~~~~~L~~~~I~~g~ti~l~~~ 89 (102)
|+|+||+.+|+.+ .++|++++||.+||++|++ ..++|+++|||+|+|+.|+|+.+ |++|+|++|++||++.+
T Consensus 1 M~i~vk~~~g~~~-~~~v~~~~tv~~lK~~i~~--~~gip~~~q~L~~~g~~L~d~~t-----L~~~~i~~~~~l~l~~~ 72 (152)
T 3b08_A 1 MQIFVKTLTGKTI-TLEVEPSDTIENVKAKIQD--KEGIPPDQQRLIFAGKQLEDGRT-----LSDYNIQKESTLHLVLR 72 (152)
T ss_dssp CEEEEEETTSCEE-EEECCTTCBHHHHHHHHHH--HHCCCGGGEEEEETTEECCTTSB-----TGGGTCCTTCEEEEEEC
T ss_pred CEEEEEeCCCCEE-EEEECCCCCHHHHHHHHHH--HHCcChHHeEEEECCeECcCccc-----HHHhccCCCCeeEEEee
Confidence 7899999999887 8999999999999999999 99999999999999999988877 99999999999999887
Q ss_pred cCC
Q 034173 90 NLD 92 (102)
Q Consensus 90 ~~~ 92 (102)
.++
T Consensus 73 ~~~ 75 (152)
T 3b08_A 73 LRG 75 (152)
T ss_dssp CTT
T ss_pred ccc
Confidence 654
No 70
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=99.77 E-value=1.3e-18 Score=115.42 Aligned_cols=78 Identities=18% Similarity=0.291 Sum_probs=70.3
Q ss_pred CCcEEEEEEcCC----------CCCceEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEeCCeecCCCCCCCCCCcccc
Q 034173 7 SESVEITVKTIG----------PAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYL 76 (102)
Q Consensus 7 ~~~i~I~vK~~~----------~~~~~~l~v~~~~TV~~LK~~Ia~~~~~~ip~~~qrLi~~Gk~L~D~~t~~~~~L~~~ 76 (102)
+..|+|.|+.++ |+.+ .++|++++||.+||++|++ ..++|+++|||+|+|+.|+|+.+ |++|
T Consensus 23 ~~~i~l~V~~p~~~~~~~~~L~G~~~-~l~v~~~~TV~~LK~~I~~--~~gip~~~QrL~~~Gk~L~D~~t-----L~~y 94 (115)
T 1we7_A 23 KGPVSIKVQVPNMQDKTEWKLNGQGL-VFTLPLTDQVSVIKVKIHE--ATGMPAGKQKLQYEGIFIKDSNS-----LAYY 94 (115)
T ss_dssp CSCEEEEEEECCCSSSCSSCCSSEEE-EEEECSCSBTHHHHHHHHH--HSSCCTTTEEEEETTEEECTTSB-----HHHH
T ss_pred CCCEEEEEEcCCCccccccccCCeEE-EEEECCCCCHHHHHHHHHH--HHCCChHHEEEEECCEECCCCCC-----HHHC
Confidence 457999999875 4455 8999999999999999999 99999999999999999988888 9999
Q ss_pred CCCCCCEEEEEEecCC
Q 034173 77 QLSNGGNINISLFNLD 92 (102)
Q Consensus 77 ~I~~g~ti~l~~~~~~ 92 (102)
+|++|++|||+++-+.
T Consensus 95 ~i~~g~~i~lv~rl~G 110 (115)
T 1we7_A 95 NMASGAVIHLALKERS 110 (115)
T ss_dssp TCCSSCEEEEEECCCS
T ss_pred CCCCCCEEEEEEEcCC
Confidence 9999999999998764
No 71
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=99.76 E-value=2.5e-18 Score=116.47 Aligned_cols=77 Identities=21% Similarity=0.315 Sum_probs=71.9
Q ss_pred CcEEEEEEcCCCCCceEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEeCCeecCCCCCCCCCCccccCCCCCCEEEEE
Q 034173 8 ESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGGNINIS 87 (102)
Q Consensus 8 ~~i~I~vK~~~~~~~~~l~v~~~~TV~~LK~~Ia~~~~~~ip~~~qrLi~~Gk~L~D~~t~~~~~L~~~~I~~g~ti~l~ 87 (102)
..|+|+||+.+|+.+ .+++++++||.+||++|++ ..++|+++|||+|+|+.|+|+.+ |++|+|++|++||++
T Consensus 75 ~~~~i~Vk~~~g~~~-~~~v~~~~tv~~lK~~i~~--~~gi~~~~qrL~~~g~~L~d~~t-----L~~~~i~~~~~i~l~ 146 (152)
T 3b08_A 75 GGMQIFVKTLTGKTI-TLEVEPSDTIENVKAKIQD--KEGIPPDQQRLIFAGKQLEDGRT-----LSDYNIQKESTLHLV 146 (152)
T ss_dssp TCEEEEEEESSSCEE-EEEECTTCBHHHHHHHHHH--HHCCCGGGEEEEETTEECCTTSB-----TGGGTCCTTCEEEEE
T ss_pred cccceeeeecCCCEE-EEEeCCCCcHHHHHHHHHH--HhCcChhhEEEEECCEECCCCCC-----HHHcCCCCCCEEEEE
Confidence 458999999999888 8999999999999999999 99999999999999999988888 999999999999999
Q ss_pred EecCC
Q 034173 88 LFNLD 92 (102)
Q Consensus 88 ~~~~~ 92 (102)
++.+.
T Consensus 147 ~r~~G 151 (152)
T 3b08_A 147 LRLRG 151 (152)
T ss_dssp ECCCC
T ss_pred EecCC
Confidence 98764
No 72
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.76 E-value=4.6e-19 Score=114.35 Aligned_cols=76 Identities=14% Similarity=0.235 Sum_probs=66.9
Q ss_pred CcEEEEEEcCCCCCceEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEeCCeecCCCCCCCCCCccccCCCCCCEEEEE
Q 034173 8 ESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGGNINIS 87 (102)
Q Consensus 8 ~~i~I~vK~~~~~~~~~l~v~~~~TV~~LK~~Ia~~~~~~ip~~~qrLi~~Gk~L~D~~t~~~~~L~~~~I~~g~ti~l~ 87 (102)
.+|+|+||. +++.+ .++|++++||.+||++|++ ..++|+++|||+|+|+.|+ +.+ |++|+|++|++|||+
T Consensus 16 ~~~~i~Vk~-~g~~~-~i~v~~~~TV~~LK~~I~~--~tgip~~~QrL~~~Gk~Ld-d~t-----L~~~~i~~g~~i~lv 85 (95)
T 1v86_A 16 ELVDLKIIW-NKTKH-DVKVPLDSTGSELKQKIHS--ITGLPPAMQKVMYKGLVPE-DKT-----LREIKVTSGAKIMVV 85 (95)
T ss_dssp CCEEEEEEE-TTEEE-EEEECTTSBHHHHHHHHHH--HHCSCSTTCCCBSSSBCCS-SSB-----HHHHCCCTTEEEEEC
T ss_pred ceEEEEEEE-CCEEE-EEEECCCCcHHHHHHHHHH--HHCcCHHHeEEEECCeeCC-cCc-----HHHCCCCCCCEEEEE
Confidence 569999995 56666 8999999999999999999 9999999999999999994 447 999999999999998
Q ss_pred EecCCC
Q 034173 88 LFNLDD 93 (102)
Q Consensus 88 ~~~~~~ 93 (102)
....++
T Consensus 86 ~~~~~~ 91 (95)
T 1v86_A 86 GSTISG 91 (95)
T ss_dssp CSSCCC
T ss_pred eccccC
Confidence 766543
No 73
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.75 E-value=1.9e-18 Score=109.28 Aligned_cols=72 Identities=22% Similarity=0.350 Sum_probs=64.7
Q ss_pred cEEEEEEcCCCCCceEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEeCCeecCCCCCCCCCCccccCCCCCCEEEEEE
Q 034173 9 SVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGGNINISL 88 (102)
Q Consensus 9 ~i~I~vK~~~~~~~~~l~v~~~~TV~~LK~~Ia~~~~~~ip~~~qrLi~~Gk~L~D~~t~~~~~L~~~~I~~g~ti~l~~ 88 (102)
++.+ +++.+|+.+ .+++++++||.+||++|++ ..++|+++|||+|+|+.|+|+.+ |++|+|++|++|+|+.
T Consensus 12 ~~~~-~~~~~g~~~-~l~v~~~~TV~~LK~~I~~--~~gip~~~qrL~~~Gk~L~D~~t-----L~~~gi~~g~~l~l~~ 82 (85)
T 2kd0_A 12 TIKL-TVKFGGKSI-PLSVSPDCTVKDLKSQLQP--ITNVLPRGQKLIFKGKVLVETST-----LKQSDVGSGAKLMLMA 82 (85)
T ss_dssp CEEE-EEEETTEEE-EEEECTTSBHHHHHHHHHH--HHCCCTTTCEEEETTEECCTTCB-----TTTTTCCTTEEEEEEC
T ss_pred cEEE-EEEECCEEE-EEEECCCCcHHHHHHHHHH--HHCcChHHEEEEECCeECCCcCC-----HHHCCCCCCCEEEEEE
Confidence 4554 667788887 8999999999999999999 99999999999999999988888 9999999999999876
Q ss_pred e
Q 034173 89 F 89 (102)
Q Consensus 89 ~ 89 (102)
.
T Consensus 83 s 83 (85)
T 2kd0_A 83 S 83 (85)
T ss_dssp C
T ss_pred e
Confidence 4
No 74
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=99.74 E-value=9.7e-20 Score=127.17 Aligned_cols=75 Identities=23% Similarity=0.333 Sum_probs=0.0
Q ss_pred EEEEEEcCCCCCceEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEeCCeecCCCCCCCCCCccccCCCCCCEEEEEEe
Q 034173 10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGGNINISLF 89 (102)
Q Consensus 10 i~I~vK~~~~~~~~~l~v~~~~TV~~LK~~Ia~~~~~~ip~~~qrLi~~Gk~L~D~~t~~~~~L~~~~I~~g~ti~l~~~ 89 (102)
|+|+||+++|+.+ .++|++++||.+||++|++ ..++|+++|||+|+|+.|+|+.+ |++|+|++|++|+|+++
T Consensus 1 MqI~VK~l~G~~~-~l~V~~~~TV~~LK~~I~~--~~gip~~~QrLi~~Gk~L~D~~t-----L~dygI~~gstL~Lvlr 72 (152)
T 3u5c_f 1 MQIFVKTLTGKTI-TLEVESSDTIDNVKSKIQD--KEGIPPDQQRLIFAGKQLEDGRT-----LSDYNIQKESTLHLVLR 72 (152)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CEEEEEeCCCCEE-EEEECCCCCHHHHHHHHHH--HhCCCHHHEEEEECCEEccccCc-----HHHcCCCCCCEEEEEee
Confidence 7899999999988 8999999999999999998 99999999999999999988888 99999999999999997
Q ss_pred cCC
Q 034173 90 NLD 92 (102)
Q Consensus 90 ~~~ 92 (102)
-+.
T Consensus 73 l~G 75 (152)
T 3u5c_f 73 LRG 75 (152)
T ss_dssp ---
T ss_pred ccC
Confidence 653
No 75
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=99.74 E-value=3.9e-18 Score=119.25 Aligned_cols=77 Identities=21% Similarity=0.314 Sum_probs=70.0
Q ss_pred CCcEEEEEEcCCCCCceEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEeCCeecCCCCCCCCCCccccCCCCCCEEEE
Q 034173 7 SESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGGNINI 86 (102)
Q Consensus 7 ~~~i~I~vK~~~~~~~~~l~v~~~~TV~~LK~~Ia~~~~~~ip~~~qrLi~~Gk~L~D~~t~~~~~L~~~~I~~g~ti~l 86 (102)
...|.|+||+.+|+.+ .++|++++||.+||++|++ +.|+|+++|||+|+|+.|+|+.+ |.+|+|++|++|||
T Consensus 94 ~gg~~i~Vk~~~g~~~-~l~v~~~~tV~~lK~~I~~--~~gip~~~q~L~~~g~~L~D~~t-----L~~y~i~~g~tl~l 165 (172)
T 3u30_A 94 RGGMQIFVKTLTGKTI-TLEVEPSDTIENVKAKIQD--KEGIPPDQQRLIFAGKQLEDGRT-----LSDYNIQKESTLHL 165 (172)
T ss_dssp CCCEEEEEEESSCCEE-EEEECTTCBHHHHHHHHHH--HHCCCGGGCCEEETTEECCTTSB-----SGGGTCCTTCEEEE
T ss_pred cccccceeecccCcce-eEEecCCCCHHHHHHHHHH--HhCCCceeEEEEECCccCCCCCc-----HHHhCCCCCCEEEE
Confidence 3568999999999988 8999999999999999999 99999999999999999988888 99999999999999
Q ss_pred EEecC
Q 034173 87 SLFNL 91 (102)
Q Consensus 87 ~~~~~ 91 (102)
+++-+
T Consensus 166 ~~rlr 170 (172)
T 3u30_A 166 VLRLR 170 (172)
T ss_dssp CC---
T ss_pred EEecC
Confidence 88754
No 76
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=3.3e-18 Score=112.17 Aligned_cols=81 Identities=12% Similarity=0.140 Sum_probs=71.0
Q ss_pred CCcEEEEEEcCCCCCceEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEe--CCeecCCCCCCCCCCccccCCCCCCEE
Q 034173 7 SESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVF--RGKVLDDTQDDDDRDDVYLQLSNGGNI 84 (102)
Q Consensus 7 ~~~i~I~vK~~~~~~~~~l~v~~~~TV~~LK~~Ia~~~~~~ip~~~qrLi~--~Gk~L~D~~t~~~~~L~~~~I~~g~ti 84 (102)
+..|.++++..+|+.+ +++|++++||.+||++|++ ++|+||++|||++ .|+ |+|+.+ |++|+|+.|++|
T Consensus 6 ~~~m~~~~vk~~Gk~~-~v~v~~~~TV~~LK~~I~~--~tgIpp~~QkLi~~~~gk-L~D~~t-----Ls~~~I~~gstL 76 (100)
T 2dzm_A 6 SGRMLDFRVEYRDRNV-DVVLEDTCTVGEIKQILEN--ELQIPVSKMLLKGWKTGD-VEDSTV-----LKSLHLPKNNSL 76 (100)
T ss_dssp CCCEEEEEEECSSCEE-EEEEETTSBHHHHHHHHHH--HHCCCTTTCCEECCSSSC-CCTTSB-----HHHHCCCSEEEE
T ss_pred CcceEEEEEEeCCeEE-EEEECCCCcHHHHHHHHHH--HHCCChhHeEEEccCCCC-CCCcCC-----HHHcCCCCCCEE
Confidence 3457888888899888 8999999999999999999 9999999999996 565 877777 999999999999
Q ss_pred EEEEecCCCcee
Q 034173 85 NISLFNLDDLSF 96 (102)
Q Consensus 85 ~l~~~~~~~~~~ 96 (102)
|+++...+..+|
T Consensus 77 ~lvl~~~~~~~~ 88 (100)
T 2dzm_A 77 YVLTPDLPPPSS 88 (100)
T ss_dssp EECCSSSCCCCS
T ss_pred EEEecCCCCCcc
Confidence 999988765555
No 77
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=99.73 E-value=1.4e-17 Score=106.21 Aligned_cols=75 Identities=12% Similarity=0.123 Sum_probs=63.1
Q ss_pred EEEEEE-cCCCCCceEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEe-------CCeecCCCCCCCCCCccccCCCCC
Q 034173 10 VEITVK-TIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVF-------RGKVLDDTQDDDDRDDVYLQLSNG 81 (102)
Q Consensus 10 i~I~vK-~~~~~~~~~l~v~~~~TV~~LK~~Ia~~~~~~ip~~~qrLi~-------~Gk~L~D~~t~~~~~L~~~~I~~g 81 (102)
++|.|. +..+....+..+++.+||.+||++|+. ..|+||++|||+| .|+.|+|+.+ |++|||++|
T Consensus 3 V~v~iths~~~~~~~E~r~~~s~TI~~lK~ki~~--~~Gip~~~QrLi~~~~~~~~~g~~l~d~~t-----L~~Y~i~~g 75 (86)
T 4b6w_A 3 VKVSLTHSASRMRVPEKRYGLAQTIESIKENVFT--HFATPPEYMQLQLIDDRGITIEKNMANDKQ-----LGYYQCRDE 75 (86)
T ss_dssp EEEEEEETTCSCCEEEEEEETTSBHHHHHHHHHT--TSCCCGGGEEEEEECTTSCEEESSCCTTSB-----GGGGTCCTT
T ss_pred EEEEEEEcCCCCeEEEEEcCccCcHHHHHHHHHH--HHCCCHHHEEEEEecCCCCceeeEcCCCCC-----HHHCCCCCC
Confidence 455554 223334348899999999999999999 9999999999997 4888988888 999999999
Q ss_pred CEEEEEEecC
Q 034173 82 GNINISLFNL 91 (102)
Q Consensus 82 ~ti~l~~~~~ 91 (102)
++|||+-.+|
T Consensus 76 ~~ihlvd~~P 85 (86)
T 4b6w_A 76 FVIHVVDLQP 85 (86)
T ss_dssp CEEEEEECCC
T ss_pred CEEEEEeCCC
Confidence 9999988776
No 78
>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*
Probab=99.71 E-value=2.3e-17 Score=126.30 Aligned_cols=76 Identities=22% Similarity=0.343 Sum_probs=70.2
Q ss_pred CCcEEEEEEcCCCCCceEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEeCCeecCCCCCCCCCCccccCCCCCCEEEE
Q 034173 7 SESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGGNINI 86 (102)
Q Consensus 7 ~~~i~I~vK~~~~~~~~~l~v~~~~TV~~LK~~Ia~~~~~~ip~~~qrLi~~Gk~L~D~~t~~~~~L~~~~I~~g~ti~l 86 (102)
+..|+|+||+++|+.+ .++|++++||.+||++|++ ..++|+++|||+|+|+.|+|+.+ |++|+|++|++|||
T Consensus 231 ~~~MqI~VKtl~Gk~~-~leV~~s~TV~dLK~kI~~--~~GIp~~~QRLi~~Gk~L~D~~T-----LsdygI~~gstL~L 302 (307)
T 3ai5_A 231 TGSMQIFVKTLTGKTI-TLEVEPSDTIENVKAKIQD--KEGIPPDQQRLIFAGKQLEDGRT-----LSDYNIQKESTLHL 302 (307)
T ss_dssp CCCEEEEEECTTSCEE-EEEECTTCBHHHHHHHHHH--HHCCCGGGCEEEETTEECCTTSB-----TGGGTCCTTCEEEE
T ss_pred CCeEEEEEEeCCCCEE-EEEECCCCcHHHHHHHHHH--HHCcChHHEEEEeCCeecCCCCC-----HHHcCCCCCCEEEE
Confidence 4679999999999887 8999999999999999999 99999999999999999988888 99999999999999
Q ss_pred EEec
Q 034173 87 SLFN 90 (102)
Q Consensus 87 ~~~~ 90 (102)
+++-
T Consensus 303 vlRL 306 (307)
T 3ai5_A 303 VLRL 306 (307)
T ss_dssp EC--
T ss_pred EEeC
Confidence 8864
No 79
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=99.71 E-value=2.8e-17 Score=106.60 Aligned_cols=73 Identities=10% Similarity=0.160 Sum_probs=63.5
Q ss_pred CCcEEEEEEcCCCC--CceEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEeC--Ce---ec-CCCCCCCCCCccccCC
Q 034173 7 SESVEITVKTIGPA--PPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFR--GK---VL-DDTQDDDDRDDVYLQL 78 (102)
Q Consensus 7 ~~~i~I~vK~~~~~--~~~~l~v~~~~TV~~LK~~Ia~~~~~~ip~~~qrLi~~--Gk---~L-~D~~t~~~~~L~~~~I 78 (102)
+..|+|+|++.+++ .+ ++++++++||.+||++|++ ..|+||++|||+|. |+ .| +|+.+ |++|+|
T Consensus 13 ~~~v~l~It~s~~~~~~~-~~~v~~~~TV~~LK~kI~~--~~GiP~~~QrL~~~~~g~~~~~L~~D~~t-----L~~Y~i 84 (95)
T 2kjr_A 13 SDFIKVNVSNSHNDAVAF-EVKLAKDLTVAQLKTKLEI--LTGGCAGTMKVQVFKGDTCVSTMDNNDAQ-----LGYYAN 84 (95)
T ss_dssp CCEEEEEEEESSCSCEEE-EEEEETTCBHHHHHHHHHH--HHCSCTTTEEEEEEETTEEEEECCCTTSB-----HHHHCC
T ss_pred CCeEEEEEEECCCCceEE-EEEeCccCHHHHHHHHHHH--HHCcCHHHeEEEEecCCcccceeCCCCCC-----HhHCCc
Confidence 46799999987765 44 8999999999999999999 99999999999998 45 34 66667 999999
Q ss_pred CCCCEEEEE
Q 034173 79 SNGGNINIS 87 (102)
Q Consensus 79 ~~g~ti~l~ 87 (102)
++|++|||+
T Consensus 85 ~~gstihlv 93 (95)
T 2kjr_A 85 SDGLRLHVV 93 (95)
T ss_dssp SSSCEEEEE
T ss_pred CCCCEEEEE
Confidence 999999974
No 80
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.69 E-value=1e-16 Score=103.10 Aligned_cols=77 Identities=12% Similarity=0.078 Sum_probs=64.8
Q ss_pred cEEEEEEcCCCCCceEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEeCC---ee----cCCCCCCCCCCccccCCCCC
Q 034173 9 SVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRG---KV----LDDTQDDDDRDDVYLQLSNG 81 (102)
Q Consensus 9 ~i~I~vK~~~~~~~~~l~v~~~~TV~~LK~~Ia~~~~~~ip~~~qrLi~~G---k~----L~D~~t~~~~~L~~~~I~~g 81 (102)
.|+|+|+..+.....++++++++||.+||++|++ ..|+|+++|||+|.| +. ++|+.+ |.+|||++|
T Consensus 7 ~v~l~I~~~~~~~~~~~~v~~~~TV~~lK~ki~~--~~gip~~~qrL~~~~~~g~~~~~l~~D~~t-----L~~y~i~~g 79 (95)
T 1v6e_A 7 GVMVFISSSLNSFRSEKRYSRSLTIAEFKCKLEL--VVGSPASCMELELYGADDKFYSKLDQEDAL-----LGSYPVDDG 79 (95)
T ss_dssp CEEEEEEETTSSSCEEEEECTTSBHHHHHHHHHH--HTCSCTTTCBCEEECSSSCEEEECCCSSSB-----TTSSSCCTT
T ss_pred EEEEEEEECCCCeeEEEEcCccCHHHHHHHHHHH--HHCCCHHHeEEEEeCCCCccccccCCCcCC-----HhHCCCCCC
Confidence 3899999866542238999999999999999999 999999999999987 43 466666 999999999
Q ss_pred CEEEEEEecCC
Q 034173 82 GNINISLFNLD 92 (102)
Q Consensus 82 ~ti~l~~~~~~ 92 (102)
++|||.-..|.
T Consensus 80 ~~l~v~d~~P~ 90 (95)
T 1v6e_A 80 CRIHVIDHSGS 90 (95)
T ss_dssp CEEEEBCCSCC
T ss_pred CEEEEEECCcc
Confidence 99998765553
No 81
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.68 E-value=9.2e-17 Score=103.95 Aligned_cols=88 Identities=13% Similarity=0.248 Sum_probs=76.2
Q ss_pred CCCcEEEEEEcCCCCCceEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEeCCeecCCCCCCCCCCccccCCCCCCEEE
Q 034173 6 ISESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGGNIN 85 (102)
Q Consensus 6 ~~~~i~I~vK~~~~~~~~~l~v~~~~TV~~LK~~Ia~~~~~~ip~~~qrLi~~Gk~L~D~~t~~~~~L~~~~I~~g~ti~ 85 (102)
.++.|+|+||+.+|+.+ .+.|.++.++..|++.+++ +.++|+++|||+|.|+.|.++.| +++|++++|++|+
T Consensus 4 ~~~~i~ikVk~~~g~~i-~~~v~~~t~l~kl~~~y~~--~~gi~~~~~rf~FdG~~l~~~~T-----p~dl~medgD~Id 75 (94)
T 2io1_B 4 MNDHINLKVAGQDGSVV-QFKIKRHTPLSKLMKAYCE--RQGLSMRQIRFRFDGQPINETDT-----PAQLEMEDEDTID 75 (94)
T ss_dssp --CEEEEEEECTTSCEE-EEEEETTSCTHHHHHHHHH--HHTCCGGGEEEEETTEECCTTCC-----TTTTTCCTTCEEE
T ss_pred CCCeEEEEEECCCCCEE-EEEECCCCHHHHHHHHHHH--HhCCCcccEEEEECCEEcCCCCC-----HHHcCCCCCCEEE
Confidence 35679999999999887 8999999999999999999 99999999999999999998888 9999999999999
Q ss_pred EEEecCCCceeeEecC
Q 034173 86 ISLFNLDDLSFQFEFG 101 (102)
Q Consensus 86 l~~~~~~~~~~~~~~~ 101 (102)
++++...+....|=+|
T Consensus 76 v~~~~~GG~~~~~~~~ 91 (94)
T 2io1_B 76 VFQQQTGGVPESSLAG 91 (94)
T ss_dssp EEECCEESCCC-----
T ss_pred EEEeccCCCccceeee
Confidence 9998877766666655
No 82
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.68 E-value=8.7e-17 Score=104.71 Aligned_cols=76 Identities=12% Similarity=0.180 Sum_probs=64.1
Q ss_pred CCcEEEEEEcCCCC--CceEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEeCCe---e----cCCCCCCCCCCccccC
Q 034173 7 SESVEITVKTIGPA--PPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGK---V----LDDTQDDDDRDDVYLQ 77 (102)
Q Consensus 7 ~~~i~I~vK~~~~~--~~~~l~v~~~~TV~~LK~~Ia~~~~~~ip~~~qrLi~~Gk---~----L~D~~t~~~~~L~~~~ 77 (102)
+..++|.|++...+ .+ ++++++++||.+||++|++ ..|+||++|||+|.|+ . ++|+.+ |++|+
T Consensus 12 ~~~v~l~It~s~~~~~~~-e~~v~~~~TV~~LK~kIe~--~~Gip~~~QrLi~~g~~g~~~~~L~~D~~t-----L~~Y~ 83 (97)
T 2kj6_A 12 DDSVHLHITHANLKSFSA-DARFSPQMSVEAVKEKLWK--KCGTSVNSMALELYDDSGSKVAVLSDDSRP-----LGFFS 83 (97)
T ss_dssp CCCEEEEEEETTSSCCCE-EEEECTTCCHHHHHHHHHH--HHCCCTTSEEEEEECSSSCBCCCSSGGGSC-----HHHHC
T ss_pred CceEEEEEEECCCCceEE-EEEeCCCChHHHHHHHHHH--HHCcCHHHeEEEEecCCCcccceecCCcCC-----HHHCC
Confidence 45689999976554 44 8999999999999999999 9999999999999884 3 355556 99999
Q ss_pred CCCCCEEEEEEec
Q 034173 78 LSNGGNINISLFN 90 (102)
Q Consensus 78 I~~g~ti~l~~~~ 90 (102)
|++|++|||+=.+
T Consensus 84 I~~g~~Ihlvd~~ 96 (97)
T 2kj6_A 84 PFDGFRLHIIDLD 96 (97)
T ss_dssp CCSCCEEEEEECC
T ss_pred CCCCCEEEEEeCC
Confidence 9999999986543
No 83
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.67 E-value=9.2e-17 Score=105.55 Aligned_cols=75 Identities=23% Similarity=0.284 Sum_probs=65.2
Q ss_pred CcEEEEEEcCCCCCceEEEec-CCCcHHHHHHHHHhccCCCCCCCceEEEeCCe-----------e----cCCCCCCCCC
Q 034173 8 ESVEITVKTIGPAPPSRLSVS-SPIKVRDLRKLIATSSANHLPIENLRLVFRGK-----------V----LDDTQDDDDR 71 (102)
Q Consensus 8 ~~i~I~vK~~~~~~~~~l~v~-~~~TV~~LK~~Ia~~~~~~ip~~~qrLi~~Gk-----------~----L~D~~t~~~~ 71 (102)
+.|.|+||+++|.. .++|+ +++||.+||++|++ +.++|+++|||+|.|+ . ++|+.+
T Consensus 6 ~~M~irvrs~~G~~--~v~v~~~~~Tv~~LK~kI~~--~~gip~~~QrL~~~~~~~~~k~~~~~~~l~~~l~d~~t---- 77 (107)
T 1wf9_A 6 SGTMLRVRSRDGLE--RVSVDGPHITVSQLKTLIQD--QLQIPIHNQTLSTNRNLLLAKSPSDFLAFTDMADPNLR---- 77 (107)
T ss_dssp CCEEEEEECSSCEE--EEEECCTTSBHHHHHHHHHH--HSCCCTTTCCCBSSGGGGTCCSHHHHTTCCSSCCTTCB----
T ss_pred CeEEEEEECCCCCE--EEEECCCCCcHHHHHHHHHH--HhCcCcccCEEEECCccccccCccccccccccCCCCCC----
Confidence 44999999999965 68999 99999999999999 9999999999999998 3 345555
Q ss_pred CccccCCCCCCEEEEEEecC
Q 034173 72 DDVYLQLSNGGNINISLFNL 91 (102)
Q Consensus 72 ~L~~~~I~~g~ti~l~~~~~ 91 (102)
|++|||++|++|||.....
T Consensus 78 -L~~~gi~~G~~L~l~~~~~ 96 (107)
T 1wf9_A 78 -ISSLNLAHGSMVYLAYEGE 96 (107)
T ss_dssp -GGGTCCCTTCEEECCCSSC
T ss_pred -HHHCCCCCCCEEEEEeCCC
Confidence 9999999999999877543
No 84
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=99.66 E-value=4.3e-16 Score=104.55 Aligned_cols=78 Identities=14% Similarity=0.192 Sum_probs=66.0
Q ss_pred CcEEEEEEcCCCCCceEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEeCC---ee----cCCCCCCCCCCccccCCCC
Q 034173 8 ESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRG---KV----LDDTQDDDDRDDVYLQLSN 80 (102)
Q Consensus 8 ~~i~I~vK~~~~~~~~~l~v~~~~TV~~LK~~Ia~~~~~~ip~~~qrLi~~G---k~----L~D~~t~~~~~L~~~~I~~ 80 (102)
..|+|+|++.+.....++++++++||.+||++|+. ..|+||++|||+|.| +. ++|+.+ |.+|||++
T Consensus 5 ~~v~l~V~~~~~~~~~e~~v~~~~TV~~lK~ki~~--~~Gip~~~qrL~~~g~~~~~~~~l~~D~~t-----L~~y~i~~ 77 (122)
T 1t0y_A 5 EVYDLEITTNATDFPMEKKYPAGMSLNDLKKKLEL--VVGTTVDSMRIQLFDGDDQLKGELTDGAKS-----LKDLGVRD 77 (122)
T ss_dssp CEEEEEEEESSCCSCEEEEEETTSBHHHHHHHHHH--HHCCCTTTEEEEEECSSSSEEEECCCCSSB-----TTTTTCCS
T ss_pred CEEEEEEEECCCCccEEEEeCCCCcHHHHHHHHHH--HhCCCHHHeEEEEecCCCccccccCCCcCC-----HHHCCCCC
Confidence 46999999876642238999999999999999999 999999999999987 43 356666 99999999
Q ss_pred CCEEEEEEecCC
Q 034173 81 GGNINISLFNLD 92 (102)
Q Consensus 81 g~ti~l~~~~~~ 92 (102)
|++|||....|.
T Consensus 78 g~~ihvvd~~p~ 89 (122)
T 1t0y_A 78 GYRIHAVDVTGG 89 (122)
T ss_dssp SEEEEEEECTTC
T ss_pred CCEEEEEeCCCC
Confidence 999999986664
No 85
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=99.65 E-value=1.3e-16 Score=124.61 Aligned_cols=79 Identities=19% Similarity=0.331 Sum_probs=68.2
Q ss_pred CCcEEEEEEcCCCCCceEEEecCCCcHHHHHHHHHhcc-CCCCCCCceEEEeCCeecCCCCCCCCCCccccCCCCCCEEE
Q 034173 7 SESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSS-ANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGGNIN 85 (102)
Q Consensus 7 ~~~i~I~vK~~~~~~~~~l~v~~~~TV~~LK~~Ia~~~-~~~ip~~~qrLi~~Gk~L~D~~t~~~~~L~~~~I~~g~ti~ 85 (102)
...|+|+||+++|+.+ .++|++++||.+||++|++.. +.++|+++|||||+||.|+|+.+ |++|+|++|++|+
T Consensus 5 ~~~M~I~VKtl~Gk~~-~leV~~~~TV~~LK~~I~~~~~~~gip~~~QrLiy~GK~L~D~~t-----L~dygI~~gstIv 78 (368)
T 1oqy_A 5 SSAVTITLKTLQQQTF-KIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVP-----IRDYRIDEKNFVV 78 (368)
T ss_dssp -CCCCEEEEETTTEEE-EECCCTTCBHHHHHHHHHHHTCSSSCCSTEEEEESSSSEECSSSB-----TTTTCCCTTSCEE
T ss_pred CceEEEEEEeCCCCEE-EEEeCCCChHHHHHHHHHHHhCcCCCChhheEEEECCeecCCcCC-----HHHcCCCCCCEEE
Confidence 3569999999999888 899999999999999998622 35799999999999999988888 9999999999995
Q ss_pred EEEecC
Q 034173 86 ISLFNL 91 (102)
Q Consensus 86 l~~~~~ 91 (102)
+++..+
T Consensus 79 ~lv~k~ 84 (368)
T 1oqy_A 79 VMVTKT 84 (368)
T ss_dssp EEEECC
T ss_pred EEEecC
Confidence 555443
No 86
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=99.63 E-value=2e-17 Score=119.20 Aligned_cols=69 Identities=22% Similarity=0.235 Sum_probs=0.0
Q ss_pred EEEEEEcCCCCCceEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEeCCeecCCCCCCCCCCccccCCCCCCEEEEEEe
Q 034173 10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGGNINISLF 89 (102)
Q Consensus 10 i~I~vK~~~~~~~~~l~v~~~~TV~~LK~~Ia~~~~~~ip~~~qrLi~~Gk~L~D~~t~~~~~L~~~~I~~g~ti~l~~~ 89 (102)
|+|+||+++|+.+ .++|++++||.+||++|++ ..++|+++|||||+|+.|+|+.+ |+ +++||||+++
T Consensus 1 MqI~VKtL~Gkti-tLeV~~sdTV~~LK~kI~~--keGIP~~qQRLIf~GK~LeD~~T-----Ls-----~~STLhLvlR 67 (189)
T 2xzm_9 1 MQVQVKTLEGETK-IYTLEQGTSVLDLKSQISQ--DMGFEIDMMTLVNNGFIAPNTEL-----VT-----DDVTYYLSLK 67 (189)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CEEEEEcCCCCEE-EEEECCcChHHHHHHHHHH--HhCcChhHEEEEecCeECCCCCc-----cc-----CCCEEEEEEe
Confidence 7899999999988 8999999999999999998 99999999999999999998888 87 9999999987
Q ss_pred cC
Q 034173 90 NL 91 (102)
Q Consensus 90 ~~ 91 (102)
-+
T Consensus 68 Lr 69 (189)
T 2xzm_9 68 LL 69 (189)
T ss_dssp --
T ss_pred cC
Confidence 65
No 87
>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}
Probab=99.59 E-value=9.5e-16 Score=117.56 Aligned_cols=75 Identities=19% Similarity=0.164 Sum_probs=65.6
Q ss_pred CCcEEEEEEcCCCCCceEEEecCCCcHHHHHHHHHhccCCCCCCCceEEE---eCCeecCCCCCCCCCCccccCCCCCCE
Q 034173 7 SESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLV---FRGKVLDDTQDDDDRDDVYLQLSNGGN 83 (102)
Q Consensus 7 ~~~i~I~vK~~~~~~~~~l~v~~~~TV~~LK~~Ia~~~~~~ip~~~qrLi---~~Gk~L~D~~t~~~~~L~~~~I~~g~t 83 (102)
.++|+|+||. +|+.+ .++|++++||.+||++|++ .+|+||++|||+ |+|+.|+|+.+ |++|+|++|++
T Consensus 3 ~~~i~i~Vk~-~g~~~-~v~v~~~~Tv~~lK~~I~~--~tgVpp~~QkLi~~k~~Gk~l~D~~~-----L~~~~ik~g~~ 73 (320)
T 3shq_A 3 VKEVVVIVKW-SGKEY-PVDLTDQDTVEVLRHEIFR--KTQVRPERQKLLNLKYKGKTAADNVK-----ISALELKPNFK 73 (320)
T ss_dssp -CEEEEEEEE-TTEEE-EEEEETTSBHHHHHHHHHH--HHCCCGGGCEETTCBSSSSBCCTTSB-----TTSSCCC--CE
T ss_pred CceEEEEEEE-CCEEE-EEEECCCCcHHHHHHHHHH--HHCcCHHHeEEeecccCCcccCcccc-----HHHcCCCCCCE
Confidence 4569999996 67777 8999999999999999999 999999999999 89999988888 99999999999
Q ss_pred EEEEEec
Q 034173 84 INISLFN 90 (102)
Q Consensus 84 i~l~~~~ 90 (102)
|+|+-..
T Consensus 74 l~L~gs~ 80 (320)
T 3shq_A 74 LMMVGST 80 (320)
T ss_dssp EEEECCC
T ss_pred EEEEccc
Confidence 9987544
No 88
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=99.59 E-value=5.8e-16 Score=97.78 Aligned_cols=75 Identities=21% Similarity=0.234 Sum_probs=62.2
Q ss_pred EEEEEEcCCCCCceEEE-ecCCCcHHHHHHHHHhccCCCCCCCceEEEeC--CeecCCCCCCCCCCccccCCCCCCEEEE
Q 034173 10 VEITVKTIGPAPPSRLS-VSSPIKVRDLRKLIATSSANHLPIENLRLVFR--GKVLDDTQDDDDRDDVYLQLSNGGNINI 86 (102)
Q Consensus 10 i~I~vK~~~~~~~~~l~-v~~~~TV~~LK~~Ia~~~~~~ip~~~qrLi~~--Gk~L~D~~t~~~~~L~~~~I~~g~ti~l 86 (102)
|+|+||+++|+. .+. +++++||.+||++|++ +.++|+++|||+|. +|.|.-. +++.+|++|||++|++|||
T Consensus 1 m~i~vr~~~G~~--~v~~l~~~~Tv~~Lk~~I~~--~~gi~~~~qrL~~~~p~k~l~l~--~~~~tL~~~gl~~g~~l~v 74 (86)
T 2kzr_A 1 WRVRCKAKGGTH--LLQGLSSRTRLRELQGQIAA--ITGIAPGSQRILVGYPPECLDLS--DRDITLGDLPIQSGDMLIV 74 (86)
T ss_dssp CCEEEEETTEEE--EECSCCTTCBHHHHHHHHHH--HTCCCTTTCCCEESSCCCCCCCC--CSSCBTTTSSCCTTCEEEC
T ss_pred CEEEEEcCCCCE--EeeecCCCCCHHHHHHHHHH--HhCCCccceEEEeCCCCcccccC--CCCCCHHHcCCCCCCEEEE
Confidence 689999999965 477 9999999999999999 99999999999986 4777410 1344599999999999998
Q ss_pred EEec
Q 034173 87 SLFN 90 (102)
Q Consensus 87 ~~~~ 90 (102)
.-..
T Consensus 75 ~~~~ 78 (86)
T 2kzr_A 75 EEDQ 78 (86)
T ss_dssp CCCS
T ss_pred EeCC
Confidence 6554
No 89
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=99.58 E-value=1.2e-14 Score=93.48 Aligned_cols=79 Identities=13% Similarity=0.277 Sum_probs=72.8
Q ss_pred CCcEEEEEEcCCCCCceEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEeCCeecCCCCCCCCCCccccCCCCCCEEEE
Q 034173 7 SESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGGNINI 86 (102)
Q Consensus 7 ~~~i~I~vK~~~~~~~~~l~v~~~~TV~~LK~~Ia~~~~~~ip~~~qrLi~~Gk~L~D~~t~~~~~L~~~~I~~g~ti~l 86 (102)
++.|+|+||+.+|+.+ .+.|.++.++..|++.+++ +.++|++++||+|.|+.|.++.| .++|++.+|++|++
T Consensus 3 ~~~i~ikVk~~~g~~v-~~~vk~~t~l~kl~~~y~~--~~gi~~~~~rf~FdG~~l~~~~T-----p~dl~medgD~Idv 74 (91)
T 2io0_B 3 NDHINLKVAGQDGSVV-QFKIKRHTPLSKLMKAYCE--RQGLSMRQIRFRFDGQPINETDT-----PAQLEMEDEDTIDV 74 (91)
T ss_dssp -CEEEEEEECTTSCEE-EEEEETTSCTHHHHHHHHH--HTTCCSTTEEEEETTEECCTTCC-----TTTTTCCTTEEEEE
T ss_pred CCeEEEEEECCCCCEE-EEEECCCChHHHHHHHHHH--HhCCCcccEEEEECCEEcCCCCC-----HHHcCCCCCCEEEE
Confidence 4679999999999887 8999999999999999999 99999999999999999998888 99999999999999
Q ss_pred EEecCCC
Q 034173 87 SLFNLDD 93 (102)
Q Consensus 87 ~~~~~~~ 93 (102)
.+....+
T Consensus 75 ~~~q~gg 81 (91)
T 2io0_B 75 FQQQTGG 81 (91)
T ss_dssp EECCCCC
T ss_pred EEeccCC
Confidence 9876643
No 90
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=99.57 E-value=1.3e-14 Score=90.86 Aligned_cols=76 Identities=20% Similarity=0.159 Sum_probs=70.1
Q ss_pred CCCCCcEEEEEEcCCCC-CceEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEeCCeecCCCCCCCCCCccccCCCCCC
Q 034173 4 GEISESVEITVKTIGPA-PPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGG 82 (102)
Q Consensus 4 ~~~~~~i~I~vK~~~~~-~~~~l~v~~~~TV~~LK~~Ia~~~~~~ip~~~qrLi~~Gk~L~D~~t~~~~~L~~~~I~~g~ 82 (102)
+..++.|+|+|++.+|+ .+ .+.|.++.++..|++.+++ +.++++++|||+|.|+.|.++.| .++|++.+|+
T Consensus 2 p~~~~~i~ikV~~~~g~~~i-~~~i~~~t~l~kl~~~y~~--~~gi~~~~~rf~fdG~~l~~~~T-----p~~l~medgD 73 (79)
T 3a4r_A 2 PLGSQELRLRVQGKEKHQML-EISLSPDSPLKVLMSHYEE--AMGLSGHKLSFFFDGTKLSGKEL-----PADLGLESGD 73 (79)
T ss_dssp TTCCCCEEEEEECSSTTCEE-EEEECTTSCHHHHHHHHHH--HHTCTTCCCEEEETTEECCSCCC-----HHHHTCCTTC
T ss_pred CCCCCEEEEEEEeCCCCEEE-EEEECCCChHHHHHHHHHH--HhCCCcccEEEEECCEEcCCCCC-----HHHcCCCCCC
Confidence 34567799999999996 66 8999999999999999999 99999999999999999998888 9999999999
Q ss_pred EEEEE
Q 034173 83 NINIS 87 (102)
Q Consensus 83 ti~l~ 87 (102)
+|++.
T Consensus 74 ~Idv~ 78 (79)
T 3a4r_A 74 LIEVW 78 (79)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 99974
No 91
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=99.56 E-value=1.1e-14 Score=89.41 Aligned_cols=70 Identities=14% Similarity=0.318 Sum_probs=66.8
Q ss_pred EEEEEEcCCCCCceEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEeCCeecCCCCCCCCCCccccCCCCCCEEEEE
Q 034173 10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGGNINIS 87 (102)
Q Consensus 10 i~I~vK~~~~~~~~~l~v~~~~TV~~LK~~Ia~~~~~~ip~~~qrLi~~Gk~L~D~~t~~~~~L~~~~I~~g~ti~l~ 87 (102)
|+|+||+.+|+.+ .+.|.++.++..|++.+++ +.|+|++++||+|.|+.|.++.| .++|++++|++|++.
T Consensus 2 i~lkV~~~~g~~v-~~~v~~~t~l~kl~~~y~~--~~gi~~~~~rf~fdG~~l~~~~T-----p~~l~medgD~Idv~ 71 (72)
T 1wm3_A 2 INLKVAGQDGSVV-QFKIKRHTPLSKLMKAYCE--RQGLSMRQIRFRFDGQPINETDT-----PAQLEMEDEDTIDVF 71 (72)
T ss_dssp EEEEEECTTSCEE-EEEECTTSCTHHHHHHHHH--HHTCCTTTCEEEETTEECCTTCC-----TTTTTCCTTEEEEEE
T ss_pred EEEEEECCCCCEE-EEEECCCChHHHHHHHHHH--HhCCCcceEEEEECCEEcCCCCC-----HHHcCCCCCCEEEEE
Confidence 8999999999877 8999999999999999999 99999999999999999988888 999999999999986
No 92
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=99.55 E-value=2.1e-14 Score=92.51 Aligned_cols=77 Identities=13% Similarity=0.283 Sum_probs=71.3
Q ss_pred CCcEEEEEEcCCCCCceEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEeCCeecCCCCCCCCCCccccCCCCCCEEEE
Q 034173 7 SESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGGNINI 86 (102)
Q Consensus 7 ~~~i~I~vK~~~~~~~~~l~v~~~~TV~~LK~~Ia~~~~~~ip~~~qrLi~~Gk~L~D~~t~~~~~L~~~~I~~g~ti~l 86 (102)
++.|+|+|++.+|+.+ .+.|.++.++..|++.+++ +.+++++++||+|.|+.|.++.| +++|++.+|++|++
T Consensus 15 ~~~i~ikV~~~~g~~i-~~~v~~~t~l~kl~~~y~~--~~gi~~~~~rf~fdG~~l~~~~T-----p~dl~medgD~Idv 86 (93)
T 2d07_B 15 NDHINLKVAGQDGSVV-QFKIKRHTPLSKLMKAYCE--RQGLSMRQIRFRFDGQPINETDT-----PAQLEMEDEDTIDV 86 (93)
T ss_dssp CCEEEEEEECTTSCEE-EEEEETTSCHHHHHHHHHH--HHTCCGGGEEEEETTEECCTTCC-----TTTTTCCTTEEEEE
T ss_pred CCeEEEEEECCCCCEE-EEEEccCCHHHHHHHHHHH--HhCCCccceEEEECCEEcCCCCC-----HHHcCCCCCCEEEE
Confidence 4679999999999877 8999999999999999999 99999999999999999998888 99999999999999
Q ss_pred EEecC
Q 034173 87 SLFNL 91 (102)
Q Consensus 87 ~~~~~ 91 (102)
++...
T Consensus 87 ~~~q~ 91 (93)
T 2d07_B 87 FQQQT 91 (93)
T ss_dssp EECC-
T ss_pred Eeecc
Confidence 88654
No 93
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.53 E-value=2.2e-14 Score=94.42 Aligned_cols=79 Identities=13% Similarity=0.279 Sum_probs=72.8
Q ss_pred CCcEEEEEEcCCCCCceEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEeCCeecCCCCCCCCCCccccCCCCCCEEEE
Q 034173 7 SESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGGNINI 86 (102)
Q Consensus 7 ~~~i~I~vK~~~~~~~~~l~v~~~~TV~~LK~~Ia~~~~~~ip~~~qrLi~~Gk~L~D~~t~~~~~L~~~~I~~g~ti~l 86 (102)
++.|+|+||+.+|+.+ .+.|.++.++..|++.+++ +.+++++++||+|.|+.|.++.| +++|++.+|++|++
T Consensus 22 ~~~I~IkVk~~~g~~i-~~kVk~~t~l~kL~~~y~e--k~gi~~~~~rf~FdG~~l~~~~T-----p~dl~medgD~Idv 93 (104)
T 1wz0_A 22 NDHINLKVAGQDGSVV-QFKIKRHTPLSKLMKAYCE--RQGLSMRQIRFRFDGQPINETDT-----PAQLEMEDEDTIDV 93 (104)
T ss_dssp SCCEEEEEECSSSCEE-EEEECTTSCHHHHHHHHHH--HHTCCTTTSCEESSSSBCCTTSC-----TTTTTCCTTEEEEE
T ss_pred CCeEEEEEECCCCCEE-EEEEcCCChHHHHHHHHHH--HhCCCcceEEEEECCEEcCCCCC-----HHHcCCCCCCEEEE
Confidence 4579999999999877 8999999999999999999 99999999999999999998888 99999999999999
Q ss_pred EEecCCC
Q 034173 87 SLFNLDD 93 (102)
Q Consensus 87 ~~~~~~~ 93 (102)
++.....
T Consensus 94 ~~~q~GG 100 (104)
T 1wz0_A 94 FQQQTSG 100 (104)
T ss_dssp CCCCCCC
T ss_pred EEeccCC
Confidence 8876543
No 94
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=99.49 E-value=4.1e-14 Score=94.06 Aligned_cols=80 Identities=16% Similarity=0.240 Sum_probs=73.4
Q ss_pred CCcEEEEEEcCCCCCceEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEeCCeecCCCCCCCCCCccccCCCCCCEEEE
Q 034173 7 SESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGGNINI 86 (102)
Q Consensus 7 ~~~i~I~vK~~~~~~~~~l~v~~~~TV~~LK~~Ia~~~~~~ip~~~qrLi~~Gk~L~D~~t~~~~~L~~~~I~~g~ti~l 86 (102)
++.|+|+|++.+|+.+ .+.|.++.++..|++.+++ +.++++++|||+|.|+.|.++.| +++|++.+|++|++
T Consensus 24 ~~~I~IkVk~~~g~~i-~fkVk~~t~l~kL~~ay~e--k~gi~~~~~rfiFdG~~L~~~~T-----p~dl~mEDgD~Idv 95 (110)
T 2k8h_A 24 TALVAVKVVNADGAEM-FFRIKSRTALKKLIDTYCK--KQGISRNSVRFLFDGTPIDETKT-----PEELGMEDDDVIDA 95 (110)
T ss_dssp CCCEEEEEEETTSCCE-EEEECTTSSHHHHHHHHHH--HHTCCSSSCEEESSSCBCCSSSH-----HHHHHCSSEEEEEE
T ss_pred CCeEEEEEECCCCCEE-EEEECCCChHHHHHHHHHH--HhCCCcccEEEEECCEEcCCCCC-----HHHcCCCCCCEEEE
Confidence 4569999999999888 8999999999999999999 99999999999999999988888 99999999999999
Q ss_pred EEecCCCc
Q 034173 87 SLFNLDDL 94 (102)
Q Consensus 87 ~~~~~~~~ 94 (102)
++.....+
T Consensus 96 ~~~q~Gg~ 103 (110)
T 2k8h_A 96 MVEQTGGL 103 (110)
T ss_dssp ECCCCCC-
T ss_pred EEcccCcc
Confidence 98776544
No 95
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.48 E-value=2.9e-13 Score=86.99 Aligned_cols=78 Identities=13% Similarity=0.282 Sum_probs=63.2
Q ss_pred CCcEEEEEEcC---CCCCceEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEeCC------ee-cCCCCCCCCCCcccc
Q 034173 7 SESVEITVKTI---GPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRG------KV-LDDTQDDDDRDDVYL 76 (102)
Q Consensus 7 ~~~i~I~vK~~---~~~~~~~l~v~~~~TV~~LK~~Ia~~~~~~ip~~~qrLi~~G------k~-L~D~~t~~~~~L~~~ 76 (102)
+..++|+|++. ++..+ +..+++++||.+||.+|+. ..|+|+..|||.|.+ .. |. +|+.+|..|
T Consensus 7 ~~~v~l~I~~~~~~~~~~~-e~~l~~~~TV~~LK~~i~~--~~gip~~~q~L~~~~~~~~~~~~~L~----~d~~~L~~y 79 (97)
T 1wjn_A 7 GQLLTLKIKCSNQPERQIL-EKQLPDSMTVQKVKGLLSR--LLKVPVSELLLSYESSKMPGREIELE----NDLQPLQFY 79 (97)
T ss_dssp SCEEEEEEEESSCSSSCCE-EEEEETTSBHHHHHHHHHT--TTTCCTTTCEEEEECTTSCSCEEECC----CSSSBSGGG
T ss_pred CccEEEEEEecCCCCCcEE-EEECCCCCCHHHHHHHHHH--HHCCChhHeEEEEEcCCCCceeeccC----CCcccHhhc
Confidence 34688888863 55555 8999999999999999998 999999999999874 12 32 334459999
Q ss_pred CCCCCCEEEEEEecC
Q 034173 77 QLSNGGNINISLFNL 91 (102)
Q Consensus 77 ~I~~g~ti~l~~~~~ 91 (102)
+|.+|++|||...+|
T Consensus 80 ~i~~G~~I~V~d~~p 94 (97)
T 1wjn_A 80 SVENGDCLLVRWSGP 94 (97)
T ss_dssp TCCTTCEEEEECCSS
T ss_pred CCCCCCEEEEEecCC
Confidence 999999999987665
No 96
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=99.45 E-value=2.9e-13 Score=89.49 Aligned_cols=76 Identities=14% Similarity=0.266 Sum_probs=69.9
Q ss_pred CCcEEEEEEcCCCCCceEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEeCCeecCCCCCCCCCCccccCCCCCCEEEE
Q 034173 7 SESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGGNINI 86 (102)
Q Consensus 7 ~~~i~I~vK~~~~~~~~~l~v~~~~TV~~LK~~Ia~~~~~~ip~~~qrLi~~Gk~L~D~~t~~~~~L~~~~I~~g~ti~l 86 (102)
++.|+|+|++ +|+.+ .+.|.++.++..|++.+++ +.+++++++||+|.|+.|.++.| .++|++.+|++|++
T Consensus 29 ~~~I~IkV~~-~g~~i-~fkIk~tt~l~kL~~ay~e--k~gi~~~~~rF~FdG~rl~~~~T-----p~dl~medgD~Idv 99 (106)
T 2eke_C 29 ETHINLKVSD-GSSEI-FFKIKKTTPLRRLMEAFAK--RQGKEMDSLRFLYDGIRIQADQT-----PEDLDMEDNDIIEA 99 (106)
T ss_dssp CSEEEEEEEC-SSCEE-EEEEETTSCTHHHHHHHHH--HHTCCGGGEEEEETTEECCTTCC-----TTTTTCCTTEEEEE
T ss_pred CCeEEEEEec-CCcEE-EEEeCCCCHHHHHHHHHHH--HhCCCcccEEEEECCeEcCCCCC-----HHHcCCCCCCEEEE
Confidence 3569999999 98887 8999999999999999999 99999999999999999998888 99999999999999
Q ss_pred EEecC
Q 034173 87 SLFNL 91 (102)
Q Consensus 87 ~~~~~ 91 (102)
.+...
T Consensus 100 ~~~q~ 104 (106)
T 2eke_C 100 HREQI 104 (106)
T ss_dssp EECC-
T ss_pred Eeecc
Confidence 88653
No 97
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=99.25 E-value=3.8e-11 Score=80.39 Aligned_cols=76 Identities=16% Similarity=0.305 Sum_probs=70.4
Q ss_pred CCcEEEEEEcCCCCCceEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEeCCeecCCCCCCCCCCccccCCCCCCEEEE
Q 034173 7 SESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGGNINI 86 (102)
Q Consensus 7 ~~~i~I~vK~~~~~~~~~l~v~~~~TV~~LK~~Ia~~~~~~ip~~~qrLi~~Gk~L~D~~t~~~~~L~~~~I~~g~ti~l 86 (102)
++.|+|+|++.+|..+ .+.|.++.++..|++.+++ +.|+++.++|++|.|+.|.++.| .+++++.+|++|.+
T Consensus 38 ~~~I~LKV~~qdg~ev-~fkIk~tt~L~KLm~aY~e--r~Gl~~~~irFlFDG~rI~~~~T-----P~dL~MEDgD~IdV 109 (115)
T 3kyd_D 38 GEYIKLKVIGQDSSEI-HFKVKMTTHLKKLKESYCQ--RQGVPMNSLRFLFEGQRIADNHT-----PKELGMEEEDVIEV 109 (115)
T ss_dssp -CEEEEEEECTTSCEE-EEEEETTSCTHHHHHHHHH--HHTCCTTSEEEEETTEECCTTCC-----TTTTTCCTTCEEEE
T ss_pred CCeEEEEEEcCCCCEE-EEEEccCChHHHHHHHHHH--HhCCChhhEEEEECCeECCCCCC-----HHHcCCCCCCEEEE
Confidence 4679999999999887 8999999999999999999 99999999999999999998888 99999999999999
Q ss_pred EEec
Q 034173 87 SLFN 90 (102)
Q Consensus 87 ~~~~ 90 (102)
.+..
T Consensus 110 ~~~Q 113 (115)
T 3kyd_D 110 YQEQ 113 (115)
T ss_dssp EECC
T ss_pred Eeec
Confidence 8764
No 98
>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}
Probab=99.13 E-value=2.7e-10 Score=82.55 Aligned_cols=85 Identities=14% Similarity=0.254 Sum_probs=73.8
Q ss_pred CCcEEEEEEcCCCCCceEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEeCCeecCCCCCCCCCCccccCCCCCCEEEE
Q 034173 7 SESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGGNINI 86 (102)
Q Consensus 7 ~~~i~I~vK~~~~~~~~~l~v~~~~TV~~LK~~Ia~~~~~~ip~~~qrLi~~Gk~L~D~~t~~~~~L~~~~I~~g~ti~l 86 (102)
++-|+|+|+. +|+.. .+.|.+++++..|++.+++ +.|+++.++|++|.|+.|.++.| .+++++.+|++|++
T Consensus 27 ~~~I~LkV~~-~g~~v-~fkIk~~t~l~kL~~ay~e--r~Gi~~~~~RF~FdG~rI~~~~T-----P~dL~MEdgD~Idv 97 (200)
T 3pge_A 27 ETHINLKVSD-GSSEI-FFKIKKTTPLRRLMEAFAK--RQGKEMDSLRFLYDGIRIQADQT-----PEDLDMEDNDIIEA 97 (200)
T ss_dssp CCCEEEEEEC-SSCEE-EEEECTTSCTHHHHHHHHH--HHSSCGGGEEEEETTEECCTTCC-----TTTTTCCTTEEEEE
T ss_pred CCeEEEEEec-CCCEE-EEEEecCCHHHHHHHHHHH--HhCCChhhEEEEECCEEcCCCCC-----HHHcCCCCCCEEEE
Confidence 3459999985 77776 8999999999999999999 99999999999999999999888 99999999999999
Q ss_pred EEecC--CCceeeEec
Q 034173 87 SLFNL--DDLSFQFEF 100 (102)
Q Consensus 87 ~~~~~--~~~~~~~~~ 100 (102)
.+... ....++|..
T Consensus 98 ~~~q~gg~kd~v~Fs~ 113 (200)
T 3pge_A 98 HREQIGGGGETIKFVA 113 (200)
T ss_dssp EECCSCCC-CCEEEEE
T ss_pred EeccCcCcCceEEEEe
Confidence 88665 445566653
No 99
>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}
Probab=98.96 E-value=1.3e-09 Score=79.03 Aligned_cols=78 Identities=13% Similarity=0.239 Sum_probs=70.7
Q ss_pred CCcEEEEEEcCCCCCceEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEeCCeecCCCCCCCCCCccccCCCCCCEEEE
Q 034173 7 SESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGGNINI 86 (102)
Q Consensus 7 ~~~i~I~vK~~~~~~~~~l~v~~~~TV~~LK~~Ia~~~~~~ip~~~qrLi~~Gk~L~D~~t~~~~~L~~~~I~~g~ti~l 86 (102)
++.|+|+|+. +|+.+ .+.|.+++++..|++.+++ +.++++.++|++|.|+.|.++.| ..++++.|||+|++
T Consensus 55 ~e~InLKVk~-dG~eV-~FKIKrtTpL~KLmeAYcE--RqGL~~~sIRFLFDGqRI~~ddT-----PeDLdMEDGDtIDV 125 (207)
T 3tix_A 55 ETHINLKVSD-GSSEI-FFKIKKTTPLRRLMEAFAK--RQGKEMDSLTFLYDGIEIQADQT-----PEDLDMEDNDIIEA 125 (207)
T ss_dssp CCEEEEEEEC-SSCEE-EEEEETTSCTHHHHHHHHH--HTTCCGGGSCEEETTEECCSSCC-----TTTTTCCTTEEEEE
T ss_pred CCcEEEEEec-CCCEE-EEEEccCChHHHHHHHHHH--HhCCCcccEEEEECCeecCCCCC-----HHHcCCCCCCEEEE
Confidence 4569999985 77777 8999999999999999999 99999999999999999998888 99999999999999
Q ss_pred EEecCCC
Q 034173 87 SLFNLDD 93 (102)
Q Consensus 87 ~~~~~~~ 93 (102)
++.....
T Consensus 126 ~leQ~GG 132 (207)
T 3tix_A 126 HREQIGG 132 (207)
T ss_dssp CCCCCTT
T ss_pred EEeccCC
Confidence 8877644
No 100
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=98.94 E-value=2.9e-10 Score=71.21 Aligned_cols=73 Identities=12% Similarity=0.170 Sum_probs=57.9
Q ss_pred CcEEEEEEcCCCCCceEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEeCCee---cCCCCCCCCCCccccCCCCCCEE
Q 034173 8 ESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKV---LDDTQDDDDRDDVYLQLSNGGNI 84 (102)
Q Consensus 8 ~~i~I~vK~~~~~~~~~l~v~~~~TV~~LK~~Ia~~~~~~ip~~~qrLi~~Gk~---L~D~~t~~~~~L~~~~I~~g~ti 84 (102)
++|.|.||+++|.. .+++++++|+.+|+++|++ ..+++++.|.+.++-.. |. ...+.+|+++||++||+|
T Consensus 3 ~~m~lRvrs~~G~~--Ri~v~~~~t~~~L~~~I~~--~~~i~~~~~~l~~~~~p~~~l~---~~~~~~l~~lgl~hGd~l 75 (80)
T 2pjh_A 3 ESIIIRVQSPDGVK--RITATKRETAATFLKKVAK--EFGFQNNGFSVYINRNKTGEIT---ASSSKSLHLLKIKHGDLL 75 (80)
T ss_dssp CCCCCEEECSSEEE--ECCCCSSCCHHHHHHHHHH--HTCCCTTTCCCCCSCCGGGGSS---SCCCCTTTTTCCCTTCCE
T ss_pred CcEEEEEECCCCCE--EEEcCCcChHHHHHHHHHH--HcCCCCCcceEEecCCCCCccc---CCCCCCHHHcCCCCCCEE
Confidence 45889999999954 5889999999999999999 89999998888654443 21 113455999999999999
Q ss_pred EEE
Q 034173 85 NIS 87 (102)
Q Consensus 85 ~l~ 87 (102)
+|.
T Consensus 76 ~l~ 78 (80)
T 2pjh_A 76 FLF 78 (80)
T ss_dssp EC-
T ss_pred EEe
Confidence 974
No 101
>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*
Probab=98.82 E-value=2.9e-08 Score=62.44 Aligned_cols=73 Identities=22% Similarity=0.367 Sum_probs=66.5
Q ss_pred CcEEEEEEcCCCCCceEEEecCCCcHHHHHHHHHhccCCCCCCC-ceEEEeCCeecCCCCCCCCCCccccCCCCCCEEEE
Q 034173 8 ESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIE-NLRLVFRGKVLDDTQDDDDRDDVYLQLSNGGNINI 86 (102)
Q Consensus 8 ~~i~I~vK~~~~~~~~~l~v~~~~TV~~LK~~Ia~~~~~~ip~~-~qrLi~~Gk~L~D~~t~~~~~L~~~~I~~g~ti~l 86 (102)
.-|++.+++....-+ .+.|+++++|++|-..... +.++|++ ..||.|.|..|....+ +.+|++.|||.|.+
T Consensus 8 ~~~~~~~~~~~~~dl-~f~I~~~t~v~kLi~ayc~--~~~I~~~~~IrllFDGdRLdp~~t-----p~DlemeD~D~IDv 79 (82)
T 3goe_A 8 KLITLLLRSSKSEDL-RLSIPVDFTVKDLIKRYCT--EVKISFHERIRLEFEGEWLDPNDQ-----VQSTELEDEDQVSV 79 (82)
T ss_dssp CEEEEEEEESSSCCE-EEEEETTSBHHHHHHHHHH--HHTCCCCTTCEEEETTEECCTTSB-----GGGSSCCTTCEEEE
T ss_pred HHHHHhhhccCCCCe-EEEecCCCCHHHHHHHHHH--HcCCCcCceEEEEEcCcccCccCC-----hhhhCCcCCceeee
Confidence 458888998777666 8999999999999999998 9999999 8999999999988888 99999999999998
Q ss_pred EE
Q 034173 87 SL 88 (102)
Q Consensus 87 ~~ 88 (102)
++
T Consensus 80 mL 81 (82)
T 3goe_A 80 VL 81 (82)
T ss_dssp EC
T ss_pred ee
Confidence 75
No 102
>3v7o_A Minor nucleoprotein VP30; ssgcid, seattle structural genomics center for infectious disease, SMT, transcription; 2.25A {Reston ebolavirus}
Probab=98.78 E-value=6.9e-10 Score=81.37 Aligned_cols=79 Identities=14% Similarity=0.236 Sum_probs=0.4
Q ss_pred CCCcEEEEEEcCCCCCceEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEeCCeecCCCCCCCCCCccccCCCCCCEEE
Q 034173 6 ISESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGGNIN 85 (102)
Q Consensus 6 ~~~~i~I~vK~~~~~~~~~l~v~~~~TV~~LK~~Ia~~~~~~ip~~~qrLi~~Gk~L~D~~t~~~~~L~~~~I~~g~ti~ 85 (102)
.++.|+|+| ..+|+.+ .+.|.+++.+..|++.+++ +.|++++++|++|.|+.+.++.| .++++++|||+|+
T Consensus 18 p~e~InLKV-~qdGseV-~FKIKrtTpL~KLM~AYcE--RqGLs~~siRFLFDGqRI~dddT-----PadL~MEDGDtID 88 (227)
T 3v7o_A 18 PETHINLKV-SDGSSEI-FFKIKKTTPLRRLMEAFAK--RQGKEMDSLRFLYDGIRIQADQT-----PEDLDMEDNDIIE 88 (227)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCeEEEEE-eCCCCEE-EEEEccCChHHHHHHHHHH--HhCCCccceEEEECCEecCCCCC-----HHHcCCCCCCEEE
Confidence 356699999 7788877 8999999999999999999 99999999999999999998888 9999999999999
Q ss_pred EEEecCCC
Q 034173 86 ISLFNLDD 93 (102)
Q Consensus 86 l~~~~~~~ 93 (102)
+++....+
T Consensus 89 V~leQ~GG 96 (227)
T 3v7o_A 89 AHREQIGG 96 (227)
T ss_dssp -------C
T ss_pred EEecccCC
Confidence 98876544
No 103
>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}
Probab=98.76 E-value=5.3e-08 Score=63.22 Aligned_cols=74 Identities=19% Similarity=0.217 Sum_probs=67.0
Q ss_pred CCCcEEEEEEcCCCC-CceEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEeCCeecCCCCCCCCCCccccCCCCCCEE
Q 034173 6 ISESVEITVKTIGPA-PPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGGNI 84 (102)
Q Consensus 6 ~~~~i~I~vK~~~~~-~~~~l~v~~~~TV~~LK~~Ia~~~~~~ip~~~qrLi~~Gk~L~D~~t~~~~~L~~~~I~~g~ti 84 (102)
.++.|+|+|+..++. .+ .+.|..+.++..|....++ +.++++...|+.|.|..|..+.| .+++++.+|++|
T Consensus 22 ~~~~I~LkV~~~dg~~~v-~fkIk~~t~l~kLm~aY~~--~~g~~~~~vrF~FDG~rI~~~~T-----P~dLdMEDgD~I 93 (97)
T 2jxx_A 22 TSQQLQLRVQGKEKHQTL-EVSLSRDSPLKTLMSHYEE--AMGLSGRKLSFFFDGTKLSGREL-----PADLGMESGDLI 93 (97)
T ss_dssp SCSEEEEEEEESSSSCEE-EEEEETTSCHHHHHHHHHH--HTTCSSSCCEEEETTEECCSCSC-----HHHHTCCTTEEE
T ss_pred CCCeEEEEEEcCCCCEEE-EEEECCCChHHHHHHHHHH--HHCCCcccEEEEECCEEcCCCCC-----HHHcCCCCCCEE
Confidence 356799999998885 45 7999999999999999998 99999999999999999988888 999999999999
Q ss_pred EEE
Q 034173 85 NIS 87 (102)
Q Consensus 85 ~l~ 87 (102)
.+.
T Consensus 94 Dv~ 96 (97)
T 2jxx_A 94 EVW 96 (97)
T ss_dssp EEE
T ss_pred EEe
Confidence 864
No 104
>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*
Probab=98.66 E-value=8e-08 Score=69.37 Aligned_cols=78 Identities=14% Similarity=0.248 Sum_probs=70.2
Q ss_pred CCCcEEEEEEcCCCCCceEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEeCCeecCCCCCCCCCCccccCCCCCCEEE
Q 034173 6 ISESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGGNIN 85 (102)
Q Consensus 6 ~~~~i~I~vK~~~~~~~~~l~v~~~~TV~~LK~~Ia~~~~~~ip~~~qrLi~~Gk~L~D~~t~~~~~L~~~~I~~g~ti~ 85 (102)
.++.|.|+|+. .++.. .+.+..++.+..|++..++ +.|++++++|++|.|+.+.++.+ ..++.+.++++|.
T Consensus 18 ~~~~i~ikv~~-~~~~v-~~~i~~~~~l~kl~~~y~~--~~g~~~~~~~f~fdG~~i~~~~T-----pk~L~~ed~d~I~ 88 (209)
T 3uf8_A 18 PETHINLKVSD-GSSEI-FFKIKKTTPLRRLMEAFAK--RQGKEMDSLRFLYDGIRIQADQT-----PEDLDMEDNDIIE 88 (209)
T ss_dssp CCSEEEEEEEC-SSCEE-EEEEETTSCTHHHHHHHHH--HHTCCGGGCEEEETTEECCTTCC-----TTTTTCCTTEEEE
T ss_pred CCCcEEEEEEc-CCCEE-EEEEeeCCHHHHHHHHHHH--hhCCChheEEEEECCEeccCCCC-----hHHhhhcccccch
Confidence 35679999998 66665 7999999999999999999 99999999999999999998888 9999999999999
Q ss_pred EEEecCC
Q 034173 86 ISLFNLD 92 (102)
Q Consensus 86 l~~~~~~ 92 (102)
+......
T Consensus 89 ~~~eq~G 95 (209)
T 3uf8_A 89 AHREQIG 95 (209)
T ss_dssp EECSCTT
T ss_pred hhccccc
Confidence 8876654
No 105
>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted catalysis, dehydrogenase phosphatase, hydrolase; 2.38A {Homo sapiens} PDB: 3qht_A 1l2n_A
Probab=98.61 E-value=4.4e-09 Score=81.44 Aligned_cols=86 Identities=15% Similarity=0.279 Sum_probs=0.0
Q ss_pred CCcEEEEEEcCCCCCceEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEeCCeecCCCCCCCCCCccccCCCCCCEEEE
Q 034173 7 SESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGGNINI 86 (102)
Q Consensus 7 ~~~i~I~vK~~~~~~~~~l~v~~~~TV~~LK~~Ia~~~~~~ip~~~qrLi~~Gk~L~D~~t~~~~~L~~~~I~~g~ti~l 86 (102)
++.|.|+|+. .+... .+.|..+++...|++..++ +.|+++.++|+.|.|+.|.++.| .+++++.+|++|.+
T Consensus 28 ~~~i~lkv~~-~~~~~-~~~i~~~~~~~~l~~~y~~--~~g~~~~~~~f~f~G~~i~~~~T-----p~~l~med~d~i~~ 98 (389)
T 4da1_A 28 ETHINLKVSD-GSSEI-FFKIKKTTPLRRLMEAFAK--RQGKEMDSLRFLYDGIRIQADQA-----PEDLDMEDNDIIEA 98 (389)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCcEEEEEec-CCcEE-EEEECCCChHHHHHHHHHH--HhCCCcceEEEEECCEEcCCCCC-----HHHcCCCCCCEeee
Confidence 3558888887 66666 7999999999999999999 99999999999999999998888 99999999999999
Q ss_pred EEecCCCceeeEecC
Q 034173 87 SLFNLDDLSFQFEFG 101 (102)
Q Consensus 87 ~~~~~~~~~~~~~~~ 101 (102)
.+....+..+.|.+|
T Consensus 99 ~~~q~gg~n~~~~~g 113 (389)
T 4da1_A 99 HREQIGGENLYFQAG 113 (389)
T ss_dssp ---------------
T ss_pred eeccccccccceeEc
Confidence 999888888877766
No 106
>3ix6_A TS, tsase, thymidylate synthase; niaid, ssgcid, seattle structural center for infectious DISE brucellosis, orchitis, epididymitis, mastitis; 2.20A {Brucella melitensis}
Probab=98.54 E-value=9.2e-09 Score=80.15 Aligned_cols=80 Identities=14% Similarity=0.225 Sum_probs=0.0
Q ss_pred CCCCCCcEEEEEEcCCCCCceEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEeCCeecCCCCCCCCCCccccCCCCCC
Q 034173 3 MGEISESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGG 82 (102)
Q Consensus 3 ~~~~~~~i~I~vK~~~~~~~~~l~v~~~~TV~~LK~~Ia~~~~~~ip~~~qrLi~~Gk~L~D~~t~~~~~L~~~~I~~g~ 82 (102)
|.+.++.|+|+|+. .|+.. .+.|..++++..|++.+++ +.|++++++|++|.|+.+.++.| .+++++++||
T Consensus 15 ~~~~~~~I~LKV~~-~g~~v-~FkIk~~t~l~kLm~aY~~--r~G~~~~~~rFlFdG~rI~~~~T-----P~~L~MEDgD 85 (360)
T 3ix6_A 15 EVKPETHINLKVSD-GSSEI-FFKIKKTTPLRRLMEAFAK--RQGKEMDSLRFLYDGIRIQADQT-----PEDLDMEDND 85 (360)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCCCCeEEEEEec-CCcEE-EEEEecCChHHHHHHHHHH--HhCCCcceEEEEECCeECCCCCC-----hHHcCCCccc
Confidence 34456679999998 56666 7999999999999999998 99999999999999999998888 9999999999
Q ss_pred EEEEEEecC
Q 034173 83 NINISLFNL 91 (102)
Q Consensus 83 ti~l~~~~~ 91 (102)
+|.+++...
T Consensus 86 ~Idv~~~Q~ 94 (360)
T 3ix6_A 86 IIEAHREQI 94 (360)
T ss_dssp ---------
T ss_pred hhhhhhccC
Confidence 999988654
No 107
>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}
Probab=98.47 E-value=8.1e-07 Score=57.54 Aligned_cols=76 Identities=14% Similarity=0.164 Sum_probs=67.5
Q ss_pred CCCcEEEEEEcCCCCCceEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEeCCeecCCCCCCCCCCccccCCCCCCEEE
Q 034173 6 ISESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGGNIN 85 (102)
Q Consensus 6 ~~~~i~I~vK~~~~~~~~~l~v~~~~TV~~LK~~Ia~~~~~~ip~~~qrLi~~Gk~L~D~~t~~~~~L~~~~I~~g~ti~ 85 (102)
.++.|.|+|+. .|... .+.+..+....-|.+..++ +.|+++++.|+.|.|..+.++.| -.++++.+||+|.
T Consensus 18 ~~~~IniKV~~-~g~ev-~FkIK~tt~l~KL~~aYc~--r~gv~~~sirFlfDG~rI~~~~T-----P~~L~meD~DiID 88 (95)
T 2l76_A 18 TPRLFPLKIRC-RADLV-RLPLRMSEPLQSVVDHMAT--HLGVSPSRILLLFGETELSPTAT-----PRTLKLGVADIID 88 (95)
T ss_dssp CCCCEEEEEEC-SSSEE-EEEECSSSCTHHHHHHHHH--HHTSCGGGEEEEETTEECCTTSC-----HHHHTCCSSCEEE
T ss_pred CCCeEEEEEEc-CCcEE-EEEEecCChHHHHHHHHHh--hcCCChhhEEEEECCcCCCCCCC-----HhHcCCCCCCEEE
Confidence 34569999996 55555 7899999999999999998 99999999999999999999999 9999999999999
Q ss_pred EEEec
Q 034173 86 ISLFN 90 (102)
Q Consensus 86 l~~~~ 90 (102)
+++-.
T Consensus 89 ~~~~~ 93 (95)
T 2l76_A 89 CVVLT 93 (95)
T ss_dssp EEECC
T ss_pred EEEec
Confidence 87753
No 108
>4efo_A Serine/threonine-protein kinase TBK1; ubiquitin like domain, transferase; 1.77A {Homo sapiens}
Probab=98.38 E-value=4.6e-07 Score=58.56 Aligned_cols=49 Identities=14% Similarity=0.228 Sum_probs=40.9
Q ss_pred EEEcCCCCCceEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEeCCeecC
Q 034173 13 TVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLD 63 (102)
Q Consensus 13 ~vK~~~~~~~~~l~v~~~~TV~~LK~~Ia~~~~~~ip~~~qrLi~~Gk~L~ 63 (102)
.|=.........+.+.+..||..||++|++ ++|+|+++|+|+|.|+.+.
T Consensus 16 HVf~~~~a~~h~v~I~~~etv~~~ke~V~e--qTgIp~~~Q~LL~eg~~l~ 64 (94)
T 4efo_A 16 HVFSLQQMTAHKIYIHSYNTATIFHELVYK--QTKIISSNQELIYEGRRLV 64 (94)
T ss_dssp EEEETTTTEEEEEEEETTCBHHHHHHHHHH--HHCCCGGGEEEEETTEEEC
T ss_pred EEEEcccceEEEEEeccchHHHHHHHHHHH--HhCCCHHHHHHHhCCCccc
Confidence 333444444458999999999999999999 9999999999999998874
No 109
>2bps_A YUKD protein; ubiquitin-like protein, ubiquitin; 2.7A {Bacillus subtilis}
Probab=98.13 E-value=1.1e-05 Score=50.67 Aligned_cols=71 Identities=18% Similarity=0.245 Sum_probs=57.3
Q ss_pred EEEEEEc--CCCCCceEEEecCCCcHHHHHHHHHhccCCCCCC---CceEEEeCCeecCCCCCCCCCCccccCCCCCCEE
Q 034173 10 VEITVKT--IGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPI---ENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGGNI 84 (102)
Q Consensus 10 i~I~vK~--~~~~~~~~l~v~~~~TV~~LK~~Ia~~~~~~ip~---~~qrLi~~Gk~L~D~~t~~~~~L~~~~I~~g~ti 84 (102)
|.|++.. -.++.+ .+++|...||.+|++.+.++.....++ ...|..-++..|.++.. |++|+|++||.|
T Consensus 5 I~ITidl~~y~~~~~-DLRIP~~~tvK~Li~~l~ea~~l~~~~~~~~~irv~NK~~~L~~~~~-----L~d~~ItnGD~L 78 (81)
T 2bps_A 5 IDITIDLKHYNGSVF-DLRLSDYHPVKKVIDIAWQAQSVSMPPREGHWIRVVNKDKVFSGECK-----LSDCGITNGDRL 78 (81)
T ss_dssp EEEEEECTTTTCCEE-EEEEETTSBTTHHHHHHHHHSCCCSCCCTTCEEEEGGGTEEEETTSB-----TGGGTCCTTCEE
T ss_pred EEEEEEeeccCCceE-EEECCCchhHHHHHHHHHHHhCCCcCCCCCCEEEEecCCEEEcCCCE-----EeeCCcCCCCEE
Confidence 6666664 466666 899999999999999999844444432 24788899999988888 999999999998
Q ss_pred EE
Q 034173 85 NI 86 (102)
Q Consensus 85 ~l 86 (102)
.+
T Consensus 79 ei 80 (81)
T 2bps_A 79 EI 80 (81)
T ss_dssp EE
T ss_pred EE
Confidence 75
No 110
>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}
Probab=97.89 E-value=1.2e-05 Score=54.50 Aligned_cols=70 Identities=10% Similarity=0.065 Sum_probs=54.9
Q ss_pred EEEEEcCCCCCceEEEecCCCcHHHHHHHHHhccCCCCCCC-------------------------------------ce
Q 034173 11 EITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIE-------------------------------------NL 53 (102)
Q Consensus 11 ~I~vK~~~~~~~~~l~v~~~~TV~~LK~~Ia~~~~~~ip~~-------------------------------------~q 53 (102)
.|+|+.++|... ++.|+.+.||.+++..|+. +.|++.. +|
T Consensus 13 ~LkV~llDg~~k-tl~VD~S~~V~~lv~~Ic~--kigI~n~~ey~L~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~k~ 89 (128)
T 2kc2_A 13 PLKIRMLDGTVK-TIMVDDSKTVTDMLMTICA--RIGITNHDEYSLVRELMEEKKDEGTGTLRKDKTLLRDEKKMEKLKQ 89 (128)
T ss_dssp EEEEECTTSCEE-EEEEEECSSHHHHHHHHHH--HHTCCCCSSEEEEEECCCCCCCCCSSCCSSSSSCSCCSCCSCSSCC
T ss_pred cEEEEcCCCCEE-EEEeCCCcCHHHHHHHHHH--HhCCCCcccccccccccccccccCchhhccccccccchhHHHHHHH
Confidence 588999999887 9999999999999999998 8887743 34
Q ss_pred EEEe--CCeecCCCCCCCCCCccccCCCCCCEEEEEE
Q 034173 54 RLVF--RGKVLDDTQDDDDRDDVYLQLSNGGNINISL 88 (102)
Q Consensus 54 rLi~--~Gk~L~D~~t~~~~~L~~~~I~~g~ti~l~~ 88 (102)
||.. .+..|+++.+ |.++||.++++|.|-.
T Consensus 90 kL~~dd~~~WLD~srt-----L~EQGI~e~~tllLRr 121 (128)
T 2kc2_A 90 KLHTDDELNWLDHGRT-----LREQGVEEHETLLLRR 121 (128)
T ss_dssp SCCCSSSEEEECSSSC-----HHHHTCCTTSEEEEEE
T ss_pred HhcccCCCCcccCCCc-----HHHcCCCCCCEEEEEE
Confidence 4421 2355555555 9999999999987743
No 111
>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A
Probab=97.70 E-value=0.00041 Score=42.88 Aligned_cols=77 Identities=10% Similarity=0.183 Sum_probs=60.6
Q ss_pred CCCcEEEEEEcCCCCCceEEEecCCCcHHHHHHHHHhccCCCCCCCceEEE--eCCeecCCCCCCCCCCccccCCCCCCE
Q 034173 6 ISESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLV--FRGKVLDDTQDDDDRDDVYLQLSNGGN 83 (102)
Q Consensus 6 ~~~~i~I~vK~~~~~~~~~l~v~~~~TV~~LK~~Ia~~~~~~ip~~~qrLi--~~Gk~L~D~~t~~~~~L~~~~I~~g~t 83 (102)
.....+|.||.++|+.+ .-....+.||.+|..-|.. .+.++...+|+ |-.|.+... +.+.+|.++|+.+..+
T Consensus 4 ~~~~~~i~iRlpdG~r~-~~~F~~~~tl~~v~~fv~~---~~~~~~~f~L~t~fPrk~l~~~--d~~~TL~e~gL~p~a~ 77 (84)
T 3qx1_A 4 MEPVSKLRIRTPSGEFL-ERRFLASNKLQIVFDFVAS---KGFPWDEYKLLSTFPRRDVTQL--DPNKSLLEVKLFPQET 77 (84)
T ss_dssp CCCEEEEEEECTTSCEE-EEEEETTSBHHHHHHHHHH---TTCCTTTEEEECSSSCCBGGGS--CTTSBTTTTTCCSEEE
T ss_pred CCCeEEEEEECCCCCEE-EEEeCCCCCHHHHHHHHHH---cCCCCCCeEEEeCCCCCCCcCC--CCCCCHHHCCCCCCCE
Confidence 34568899999999987 6788899999999999986 34677888887 556778421 2245699999999999
Q ss_pred EEEEE
Q 034173 84 INISL 88 (102)
Q Consensus 84 i~l~~ 88 (102)
|+|.-
T Consensus 78 L~ve~ 82 (84)
T 3qx1_A 78 LFLEA 82 (84)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 98854
No 112
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=97.47 E-value=0.00036 Score=44.62 Aligned_cols=74 Identities=12% Similarity=0.144 Sum_probs=65.8
Q ss_pred cEEEEEEcCCCCCceEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEeCCeecCCCCCCCCCCccccCCCCCCEEEEEE
Q 034173 9 SVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGGNINISL 88 (102)
Q Consensus 9 ~i~I~vK~~~~~~~~~l~v~~~~TV~~LK~~Ia~~~~~~ip~~~qrLi~~Gk~L~D~~t~~~~~L~~~~I~~g~ti~l~~ 88 (102)
-|.|.|-.+++... .+.|.|+.++.++=+...+ +.|+.+++-.|-|+++.|+=+.. +.-.||-+|.++.++.
T Consensus 9 ~m~v~Vl~~n~rr~-~VKvtp~t~L~~VL~eaC~--K~gl~~~~~~Lkh~~k~lDLSlp-----fRlsgLpnnAkLELv~ 80 (90)
T 2al3_A 9 GSAVSVLAPNGRRH-TVKVTPSTVLLQVLEDTCR--RQDFNPSEYDLKFQRTVLDLSLQ-----WRFANLPNNAKLEMVP 80 (90)
T ss_dssp -CCEEEECTTSCEE-EECCCTTSBHHHHHHHHHH--HTTCCGGGCEEEETTEEESSSCB-----HHHHCCCSSCEEEEEC
T ss_pred ccEEEEEcCCCcEE-EEEECCCCCHHHHHHHHHH--HhCCChhhCeEEeCCEeccccce-----eEecCCCCCCEEEEEE
Confidence 36888999999888 8999999999998888877 99999999999999999977777 8999999999999876
Q ss_pred ec
Q 034173 89 FN 90 (102)
Q Consensus 89 ~~ 90 (102)
..
T Consensus 81 ~s 82 (90)
T 2al3_A 81 VS 82 (90)
T ss_dssp SS
T ss_pred cc
Confidence 54
No 113
>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A
Probab=97.39 E-value=0.0013 Score=42.73 Aligned_cols=79 Identities=14% Similarity=0.117 Sum_probs=61.6
Q ss_pred CcEEEEEEcCCCCCceEEEecCCCcHHHHHHHHHhccCCCCCCCceEEE--eCCeecCCCCCCCCCCccccCCCCCCEEE
Q 034173 8 ESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLV--FRGKVLDDTQDDDDRDDVYLQLSNGGNIN 85 (102)
Q Consensus 8 ~~i~I~vK~~~~~~~~~l~v~~~~TV~~LK~~Ia~~~~~~ip~~~qrLi--~~Gk~L~D~~t~~~~~L~~~~I~~g~ti~ 85 (102)
...+|.||.++|+.+ .-....+.||.+|.+-|.. ..+.+.....|+ |--|.+.++ +.+++|.+.|+.+..+|+
T Consensus 12 ~~t~IqIRlpdG~rl-~~rF~~~~tl~~v~~fV~~--~~~~~~~~f~L~t~fPrk~l~~~--d~~~TL~elgL~psa~L~ 86 (109)
T 2dzk_A 12 TIARIQFRLPDGSSF-TNQFPSDAPLEEARQFAAQ--TVGNTYGNFSLATMFPRREFTRE--DYKRRLLDLELAPSASVV 86 (109)
T ss_dssp CCEEEEEECSSSCEE-EEEECTTSBHHHHHHHHHH--HHTTSSCSCEEECSSSCCBCCTT--TTTSBTGGGTCSSEEEEE
T ss_pred CcEEEEEECCCCCEE-EEEeCCCCCHHHHHHHHHh--ccCCCCCceEEEcCCCCcCCccc--ccCCCHHHCCCCCceEEE
Confidence 458999999999977 7789999999999999987 555666667776 566777532 234669999999998888
Q ss_pred EEEecC
Q 034173 86 ISLFNL 91 (102)
Q Consensus 86 l~~~~~ 91 (102)
+.-...
T Consensus 87 v~~~~~ 92 (109)
T 2dzk_A 87 LLPAGR 92 (109)
T ss_dssp EECCSS
T ss_pred EEECcC
Confidence 766543
No 114
>1wj4_A KIAA0794 protein; UBX domain, beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.2
Probab=97.01 E-value=0.0033 Score=41.79 Aligned_cols=76 Identities=14% Similarity=0.159 Sum_probs=60.7
Q ss_pred CcEEEEEEcCCCCCceEEEecCCCcHHHHHHHHHhccCCCCCCCceEEE--eCCeecCCCCCCCCCCccccCCCCCCEEE
Q 034173 8 ESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLV--FRGKVLDDTQDDDDRDDVYLQLSNGGNIN 85 (102)
Q Consensus 8 ~~i~I~vK~~~~~~~~~l~v~~~~TV~~LK~~Ia~~~~~~ip~~~qrLi--~~Gk~L~D~~t~~~~~L~~~~I~~g~ti~ 85 (102)
...+|.||.++|+.+ .-....+.||.+|..-|.. . ++++....|+ |-.|.|... +.+.+|.+.||.+..+|+
T Consensus 42 ~~t~IqIRlPdG~rl-~~rF~~~~tl~~V~~fV~~--~-~~~~~~F~L~t~fPrk~l~~~--d~~~TL~e~gL~psa~Li 115 (124)
T 1wj4_A 42 PKAQLMLRYPDGKRE-QITLPEQAKLLALVKHVQS--K-GYPNERFELLTNFPRRKLSHL--DYDITLQEAGLCPQETVF 115 (124)
T ss_dssp CEEEEEEECTTSCEE-EEEEETTSCHHHHHHHHHH--H-HCCTTTEEEECSSSCCEETSS--CSSSCTTTTTCCSSBCCE
T ss_pred CcEEEEEECCCCCEE-EEEeCCCCCHHHHHHHHHh--c-CCCCCCeEEecCCCCcCCccC--CCCCCHHHCCCCCceEEE
Confidence 469999999999887 7789999999999999986 4 6777788887 567888321 224569999999988888
Q ss_pred EEEe
Q 034173 86 ISLF 89 (102)
Q Consensus 86 l~~~ 89 (102)
|.-.
T Consensus 116 v~~~ 119 (124)
T 1wj4_A 116 VQES 119 (124)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 7543
No 115
>4e71_A Plexin-B2, MM1; transmembrane, signaling, RBD, structural genomics consortium, SGC, signaling protein; 2.26A {Homo sapiens}
Probab=96.95 E-value=0.01 Score=39.09 Aligned_cols=79 Identities=11% Similarity=0.158 Sum_probs=52.6
Q ss_pred CcEEEEEEcCC--CCCceEEEecCCCcHHHHHHHHHhccCCCCC------CCceEEEe----CCeecCCCCC--------
Q 034173 8 ESVEITVKTIG--PAPPSRLSVSSPIKVRDLRKLIATSSANHLP------IENLRLVF----RGKVLDDTQD-------- 67 (102)
Q Consensus 8 ~~i~I~vK~~~--~~~~~~l~v~~~~TV~~LK~~Ia~~~~~~ip------~~~qrLi~----~Gk~L~D~~t-------- 67 (102)
.++++.+-... +..+ .+.|-..+||.++|++|-.+.-.+.| ++...|.+ .|++|.|...
T Consensus 10 ~~ltl~v~~~~~~~~~i-~vkVLdCDTItQvKeKiLd~vyk~~pyS~rP~~~~~dLEwr~g~~~~iL~D~D~ts~~~~~w 88 (111)
T 4e71_A 10 APLTVSVIVQDEGVDAI-PVKVLNCDTISQVKEKIIDQVYRGQPCSCWPRPDSVVLEWRPGSTAQILSDLDLTSQREGRW 88 (111)
T ss_dssp CEEEEEEEETTSCCCCE-EEEEETTCBHHHHHHHHHHHHTC---------CCSEEEEEC--CCCEECCSSCTTSCC---C
T ss_pred EEEEEEEEecCCCCCce-eeeeeccCcHHHHHHHHHHHHHcCCccccCCCCCceeeEEecCCCCccccccCccceecCcc
Confidence 56777776443 2333 56677889999999999876555544 45566766 3567766431
Q ss_pred CCCCCccccCCCCCCEEEEE
Q 034173 68 DDDRDDVYLQLSNGGNINIS 87 (102)
Q Consensus 68 ~~~~~L~~~~I~~g~ti~l~ 87 (102)
..=-||.+|+|.||.+|-++
T Consensus 89 krLNTL~HY~V~dgatl~l~ 108 (111)
T 4e71_A 89 KRVNTLMHYNVRDGATLILS 108 (111)
T ss_dssp CCCCBHHHHTCCTTCEEEEE
T ss_pred eEecchhhcCCCCCCEEEEE
Confidence 11157999999999999764
No 116
>2cr5_A Reproduction 8; UBX domain, D0H8S2298E protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.2
Probab=96.91 E-value=0.0072 Score=39.09 Aligned_cols=77 Identities=12% Similarity=0.070 Sum_probs=60.3
Q ss_pred CcEEEEEEcCCCCCceEEEecCCCcHHHHHHHHHhccCCCCCCCceEEE--eCCeecCCCCCCCCCCccccCCCCCCEEE
Q 034173 8 ESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLV--FRGKVLDDTQDDDDRDDVYLQLSNGGNIN 85 (102)
Q Consensus 8 ~~i~I~vK~~~~~~~~~l~v~~~~TV~~LK~~Ia~~~~~~ip~~~qrLi--~~Gk~L~D~~t~~~~~L~~~~I~~g~ti~ 85 (102)
...+|-||.++|+.+ .-....+.||.+|..-|.. . +..+...+|+ |-.|.|.. +.+.+|.+.||.+..+|+
T Consensus 22 ~~~~IqiRlpdG~r~-~rrF~~~~tl~~v~~fv~~--~-~~~~~~f~L~t~fPrk~l~~---d~~~TL~e~gL~p~a~L~ 94 (109)
T 2cr5_A 22 EVVTVALRCPNGRVL-RRRFFKSWNSQVLLDWMMK--V-GYHKSLYRLSTSFPRRALEV---EGGSSLEDIGITVDTVLN 94 (109)
T ss_dssp SEEEEEEECTTSCEE-EEEEESSSBTHHHHHHHHH--H-TCCTTTEEEECSSSCCBCCC---CSSCBHHHHTCSSCEEEE
T ss_pred CcEEEEEECCCCCEE-EEEeCCCCCHHHHHHHHHh--c-CCCCCCeEEEeCCCCcCCCC---CCCCCHHHcCCCCCeEEE
Confidence 469999999999987 6788899999999999985 3 4566778886 55777842 234669999999998888
Q ss_pred EEEecC
Q 034173 86 ISLFNL 91 (102)
Q Consensus 86 l~~~~~ 91 (102)
|.-+..
T Consensus 95 Ve~~~~ 100 (109)
T 2cr5_A 95 VEEKEQ 100 (109)
T ss_dssp EEECCC
T ss_pred EEeCCC
Confidence 766554
No 117
>2r2o_A Plexin-B1; effector domain, structural genomics, structural GEN consortium, SGC, glycoprotein, membrane, phosphorylation, R secreted, transmembrane; 2.00A {Homo sapiens} PDB: 2rex_A* 2jph_A
Probab=96.67 E-value=0.013 Score=40.02 Aligned_cols=82 Identities=9% Similarity=0.116 Sum_probs=53.7
Q ss_pred CcEEEEEEcCCC------CCceEEEecCCCcHHHHHHHHHhccCCCCC------CCceEEEe----CCe-ecCCCCCCC-
Q 034173 8 ESVEITVKTIGP------APPSRLSVSSPIKVRDLRKLIATSSANHLP------IENLRLVF----RGK-VLDDTQDDD- 69 (102)
Q Consensus 8 ~~i~I~vK~~~~------~~~~~l~v~~~~TV~~LK~~Ia~~~~~~ip------~~~qrLi~----~Gk-~L~D~~t~~- 69 (102)
.+++|.|-...+ ..+ .+.|=..+||.++|++|-++.-.+.| ++..-|.+ .|+ +|.|....-
T Consensus 23 ~~ltl~v~~~~~~~~~~~~~i-~VkVLdCDTItQvKeKiLDavYk~~PySqRP~~~d~dLEwr~g~~g~liL~D~D~tS~ 101 (138)
T 2r2o_A 23 RPLTLNALLAVGPGAGEAQGV-PVKVLDCDTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTSE 101 (138)
T ss_dssp CEEEEEEEEC-------CCCE-EEEEETTCBHHHHHHHHHHHHTTTSCGGGCCCGGGEEEEEECSSSCEEEECSSSTTCC
T ss_pred EEEEEEEEccCCcccccCCce-eEEEeccccHHHHHHHHHHHHHcCCccccCCCccceeEEEecCCcCceEeeccCCccc
Confidence 567777755422 233 67777899999999999886656654 44455654 344 365543110
Q ss_pred -C------CCccccCCCCCCEEEEEEec
Q 034173 70 -D------RDDVYLQLSNGGNINISLFN 90 (102)
Q Consensus 70 -~------~~L~~~~I~~g~ti~l~~~~ 90 (102)
+ -+|..|+|.+|.+|-+.-+.
T Consensus 102 ~~~~wkrLNTL~HY~V~Dga~l~l~~~~ 129 (138)
T 2r2o_A 102 VQGLWRRLNTLQHYKVPDGATVALVPCL 129 (138)
T ss_dssp EETTEEECCBHHHHTCCTTCEEEEEEC-
T ss_pred ccCCceeecchhccCCCCCCEEEEEECC
Confidence 0 36999999999999876554
No 118
>3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus}
Probab=96.58 E-value=0.0079 Score=43.59 Aligned_cols=64 Identities=20% Similarity=0.103 Sum_probs=50.5
Q ss_pred EEEecCCCcHHHHHHHHHhccCCCCCCC-ceEEEe-C----CeecCCCCCCCCCCccccCCCCCCEEEEEEecCCC
Q 034173 24 RLSVSSPIKVRDLRKLIATSSANHLPIE-NLRLVF-R----GKVLDDTQDDDDRDDVYLQLSNGGNINISLFNLDD 93 (102)
Q Consensus 24 ~l~v~~~~TV~~LK~~Ia~~~~~~ip~~-~qrLi~-~----Gk~L~D~~t~~~~~L~~~~I~~g~ti~l~~~~~~~ 93 (102)
++.++...||.+|++.+.. ..+++++ .-||-. . ...|.| .+.+|.+++|.+|+.|.+-+++.|.
T Consensus 155 ~~~~Sk~~ti~~l~~~~~~--~~~i~~~~~~RLW~~~~~~~~~~L~~----~~~tl~d~~L~~~Q~illE~r~~dg 224 (231)
T 3jyu_A 155 SCHFSKADTIATIEKEMRK--LFNIPAERETRLWNKYMSNTYEQLSK----LDNTIQDAGLYQGQVLVIEPQNEDG 224 (231)
T ss_dssp EEEECTTCBHHHHHHHHHH--HTTCCTTSCEEEEECSSSSSCEECCC----TTSBTTTTTCCTTEEEEEEECCTTS
T ss_pred EEEecccCcHHHHHHHHHH--HhCCCCCCeEEEEEecCCCCHhhhcC----CCCCHHHhCCCCCCEEEEEEecCCC
Confidence 4667889999999999998 9999997 588842 2 233433 2345999999999999999999765
No 119
>3h6n_A Plexin-D1; structural genomics consortium, SGC, membrane, transmembrane, receptor, alternative splicing, cell membrane, glycoprotein, polymorphism; 2.00A {Homo sapiens}
Probab=96.45 E-value=0.066 Score=36.01 Aligned_cols=66 Identities=15% Similarity=0.302 Sum_probs=47.1
Q ss_pred EEEecCCCcHHHHHHHHHhccCCCCC------CCceEEEe----CCe-ecCCCCCC--------CCCCccccCCCCCCEE
Q 034173 24 RLSVSSPIKVRDLRKLIATSSANHLP------IENLRLVF----RGK-VLDDTQDD--------DDRDDVYLQLSNGGNI 84 (102)
Q Consensus 24 ~l~v~~~~TV~~LK~~Ia~~~~~~ip------~~~qrLi~----~Gk-~L~D~~t~--------~~~~L~~~~I~~g~ti 84 (102)
.+.|=..+||.++|++|-.+.-.+.| ++...|.+ .|+ +|.|.... .=-||.+|+|.||.+|
T Consensus 20 ~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~~krLNTL~HY~V~dgatv 99 (127)
T 3h6n_A 20 SVRAMDTDTLTQVKEKILEAFCKNVPYSQWPRAEDVDLEWFASSTQSYILRDLDDTSVVEDGRKKLNTLAHYKIPEGASL 99 (127)
T ss_dssp EEEEETTSBHHHHHHHHHHHHSTTSCGGGSCCGGGEEEEEECSSSCEEECCSSSTTSCEETTEECCCBTTTTTCCTTCEE
T ss_pred eeeeeccCchhhhhHHHHHHHhccCCcccCCCCcccceEEecCCCCceEeecCCCcceecCceeEeccccccCCCCCCEE
Confidence 66777889999999999876655554 46678876 333 36653311 1157999999999999
Q ss_pred EEEEe
Q 034173 85 NISLF 89 (102)
Q Consensus 85 ~l~~~ 89 (102)
-++.+
T Consensus 100 ~l~~~ 104 (127)
T 3h6n_A 100 AMSLI 104 (127)
T ss_dssp EEEEC
T ss_pred EEEEc
Confidence 88754
No 120
>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A
Probab=96.42 E-value=0.014 Score=41.81 Aligned_cols=64 Identities=22% Similarity=0.155 Sum_probs=50.0
Q ss_pred EEEecCCCcHHHHHHHHHhccCCCCCCC-ceEEE--e-C--CeecCCCCCCCCCCccccCCCCCCEEEEEEecCCC
Q 034173 24 RLSVSSPIKVRDLRKLIATSSANHLPIE-NLRLV--F-R--GKVLDDTQDDDDRDDVYLQLSNGGNINISLFNLDD 93 (102)
Q Consensus 24 ~l~v~~~~TV~~LK~~Ia~~~~~~ip~~-~qrLi--~-~--Gk~L~D~~t~~~~~L~~~~I~~g~ti~l~~~~~~~ 93 (102)
++.++...||.+|++.+.+ ..+++++ .-||- + . ...|.| .+.+|.+++|.+|+.|.|-+++.|.
T Consensus 143 ~~~~Sk~~ti~~l~~~~~~--~~~i~~~~~~RlW~~~~~~~~~~L~~----~~~tl~~~~l~~~Q~illE~r~~dg 212 (217)
T 4a3p_A 143 TRRFSKADTIDTIEKEIRK--IFSIPDEKETRLWNKYMSNTFEPLNK----PDSTIQDAGLYQGQVLVIEQKNEDG 212 (217)
T ss_dssp EEEECTTSBHHHHHHHHHH--HTTCCTTSCEEEEEEEETTEEEECCC----TTSBHHHHTCCTTCEEEEEECCCC-
T ss_pred EEEEcccchHHHHHHHHHH--HhCCCCCCceEEEEecCCCCeeecCC----CCCCHHHhCCCCCCEEEEEEecCCC
Confidence 5777999999999999998 8999987 57773 3 2 233333 2345999999999999999999765
No 121
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=96.34 E-value=0.014 Score=35.46 Aligned_cols=60 Identities=17% Similarity=0.283 Sum_probs=43.7
Q ss_pred EEEEEEcCCCCCceEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEeCCeecCCCCCCCCCCccccCCCCCCEEEEE
Q 034173 10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGGNINIS 87 (102)
Q Consensus 10 i~I~vK~~~~~~~~~l~v~~~~TV~~LK~~Ia~~~~~~ip~~~qrLi~~Gk~L~D~~t~~~~~L~~~~I~~g~ti~l~ 87 (102)
|+|+||.. |.....+++++++||++| ++ ..++|++.--...+|+.+..+. +.+||+|.+.
T Consensus 1 M~v~Vkl~-g~~~~~~ev~~g~Tv~dL---L~---~Lgl~~~~VvV~vNG~~v~~d~-----------~l~GD~VeIv 60 (74)
T 2l32_A 1 MNVTVEVV-GEETSEVAVDDDGTYADL---VR---AVDLSPHEVTVLVDGRPVPEDQ-----------SVEVDRVKVL 60 (74)
T ss_dssp CEEEEECS-SSSEEEEECSTTCSHHHH---HH---TTCCCSSCCCEECCCCCCCTTS-----------SSCCCCEEEC
T ss_pred CEEEEEEe-CccceeEEcCCCCcHHHH---HH---HcCCCcceEEEEECCEECCHHH-----------CCCCCEEEEE
Confidence 67888876 444446899999999997 32 6788998887788999885333 2348888764
No 122
>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}
Probab=96.32 E-value=0.041 Score=32.76 Aligned_cols=65 Identities=15% Similarity=0.350 Sum_probs=42.1
Q ss_pred EEEEEEcCCCCCceEEEecCCCcHHHHHHHHHhccCCCCCC--CceEEEeCCeecCCCCCCCCCCccccCCCCCCEEEE
Q 034173 10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPI--ENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGGNINI 86 (102)
Q Consensus 10 i~I~vK~~~~~~~~~l~v~~~~TV~~LK~~Ia~~~~~~ip~--~~qrLi~~Gk~L~D~~t~~~~~L~~~~I~~g~ti~l 86 (102)
|.|+||....-.-..+++ ...||.+|.+.+.. ..++.. ..-++..+|+...+. +.-+++||+|.+
T Consensus 1 M~v~V~~fa~l~~~~~e~-~~~tv~~ll~~L~~--~~~l~~~l~~~~vavN~~~v~~~---------~~~l~~gDeV~i 67 (74)
T 3rpf_C 1 MMVEVRFFGPIKEENFFI-KANDLKELRAILQE--KEGLKEWLGVCAIALNDHLIDNL---------NTPLKDGDVISL 67 (74)
T ss_dssp CEEEEEECTTCCCCCEEE-ECSSHHHHHHHHHT--CTTTTTTTTTCEEEESSSEECCT---------TCCCCTTCEEEE
T ss_pred CEEEEEEEeecceeEEee-CCCcHHHHHHHHHH--CcCHHHHhhccEEEECCEEcCCC---------CcCCCCCCEEEE
Confidence 567777544322125677 67899999999986 433322 445666788875432 236999999876
No 123
>4e74_A Plexin-A4; RBD, structural genomics, structural genomics consor SGC, signaling protein; 1.58A {Homo sapiens} PDB: 3q3j_A*
Probab=96.11 E-value=0.054 Score=35.91 Aligned_cols=83 Identities=12% Similarity=0.238 Sum_probs=53.3
Q ss_pred CcEEEEEEcCCCC--CceEEEecCCCcHHHHHHHHHhccCCCCC------CCceEEEe-CC---e-ecCCCCC-------
Q 034173 8 ESVEITVKTIGPA--PPSRLSVSSPIKVRDLRKLIATSSANHLP------IENLRLVF-RG---K-VLDDTQD------- 67 (102)
Q Consensus 8 ~~i~I~vK~~~~~--~~~~l~v~~~~TV~~LK~~Ia~~~~~~ip------~~~qrLi~-~G---k-~L~D~~t------- 67 (102)
.+++|.+-...+. ....+.|-..+||.++|++|-.+.-.+.| ++...|.+ .| + +|.|...
T Consensus 12 ~~ltl~v~~~~~~~~~~i~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~ 91 (117)
T 4e74_A 12 KTLVLSCVSPDNANSPEVPVKILNCDTITQVKEKILDAIFKNVPCSHRPKAADMDLEWRQGSGARMILQDEDITTKIEND 91 (117)
T ss_dssp CEEEEEECCC----CCCEEEEEETTSBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEECTTSCEEEECSSSTTCCC---
T ss_pred EEEEEEEEccCCCCCCceEeeeecCCchHHHHHHHHHHHhcCCCcccCCCCCceeEEEecCCCCceEeecCCCccEecCc
Confidence 5677776554322 11256666889999999999876655555 45577765 23 3 3555321
Q ss_pred -CCCCCccccCCCCCCEEEEEEec
Q 034173 68 -DDDRDDVYLQLSNGGNINISLFN 90 (102)
Q Consensus 68 -~~~~~L~~~~I~~g~ti~l~~~~ 90 (102)
..=-||.+|+|.+|.+|-+.-+.
T Consensus 92 wkrLNTL~HY~V~dgatl~l~~~~ 115 (117)
T 4e74_A 92 WKRLNTLAHYQVPDGSVVALVSKQ 115 (117)
T ss_dssp CCCCCBHHHHTCCTTCEEEEEECC
T ss_pred ceEeccccccCCCCCCEEEEEeCC
Confidence 11157999999999999876543
No 124
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=96.03 E-value=0.091 Score=39.79 Aligned_cols=82 Identities=16% Similarity=0.193 Sum_probs=59.2
Q ss_pred EEEEEEcCCCCCceEEEecCCCcHHHHHHHHHhccCCC----CCCCceEEEe------CCeecCCCCCCCCCCccccCCC
Q 034173 10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANH----LPIENLRLVF------RGKVLDDTQDDDDRDDVYLQLS 79 (102)
Q Consensus 10 i~I~vK~~~~~~~~~l~v~~~~TV~~LK~~Ia~~~~~~----ip~~~qrLi~------~Gk~L~D~~t~~~~~L~~~~I~ 79 (102)
+.++|.-. +...++.+++++||.+.-.+|.+ +.. -+++.--|.. +|+.|+++.+ |+.|++.
T Consensus 4 ~~~~~~~~--~~~~~~~f~~~~~v~~~~~~i~e--~~~~~~~~~~~~y~l~~~~~~~~~~~Wl~~~~~-----l~~y~~~ 74 (371)
T 3ivf_A 4 LSLKISIG--NVVKTMQFEPSTMVYDACRMIRE--RIPEALAGPPNDFGLFLSDDDPKKGIWLEAGKA-----LDYYMLR 74 (371)
T ss_dssp EEEEEEET--TEEEEEEECTTCBHHHHHHHHHT--TCGGGGSSCGGGEEEEECCSSGGGCEECCTTSB-----GGGGTCC
T ss_pred EEEEEEec--ceeEEEEECCCCCHHHHHHHHHH--hcccccCCCHHHCeEeccCCCCCcCEeccCCCC-----HHHhCCC
Confidence 45555554 33348999999999999999977 543 3566666654 5778877777 9999999
Q ss_pred CCCEEEEE-------EecCCCceeeEec
Q 034173 80 NGGNINIS-------LFNLDDLSFQFEF 100 (102)
Q Consensus 80 ~g~ti~l~-------~~~~~~~~~~~~~ 100 (102)
+|+.|... |.=+|+....+++
T Consensus 75 ~~~~l~~~~~~~~~~V~l~dg~~~~~~v 102 (371)
T 3ivf_A 75 NGDTMEYRKKQRPLKIRMLDGTVKTIMV 102 (371)
T ss_dssp TTCEEEEEECEEEEEEECTTSCEEEEEE
T ss_pred CCceeeccCceeEEEEECcCCCEEEEEE
Confidence 99998876 4445666655554
No 125
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=96.03 E-value=0.061 Score=31.84 Aligned_cols=61 Identities=21% Similarity=0.375 Sum_probs=45.1
Q ss_pred cEEEEEEcCCCCCceEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEeCCeecCCCCCCCCCCccccCCCCCCEEEEE
Q 034173 9 SVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGGNINIS 87 (102)
Q Consensus 9 ~i~I~vK~~~~~~~~~l~v~~~~TV~~LK~~Ia~~~~~~ip~~~qrLi~~Gk~L~D~~t~~~~~L~~~~I~~g~ti~l~ 87 (102)
.|+|+|.-..++. .++++...||.+|.+.+. +++..-....+|..+..+. -+++||.|-+.
T Consensus 4 ~m~i~vNg~~~~~--~~~~~~~~tv~~Ll~~l~------~~~~~v~vavN~~~v~~~~----------~L~~gD~V~ii 64 (70)
T 1ryj_A 4 GMKFTVITDDGKK--ILESGAPRRIKDVLGELE------IPIETVVVKKNGQIVIDEE----------EIFDGDIIEVI 64 (70)
T ss_dssp CEEEEEEETTEEE--EEEESSCCBHHHHHHHTT------CCTTTEEEEETTEECCTTS----------BCCTTCEEEEE
T ss_pred eEEEEEeCccCce--eEECCCCCcHHHHHHHhC------CCCCCEEEEECCEECCCcc----------cCCCCCEEEEE
Confidence 4888887655433 578888899999987763 4566667889999995433 58999998764
No 126
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=95.89 E-value=0.017 Score=36.18 Aligned_cols=49 Identities=12% Similarity=0.243 Sum_probs=41.7
Q ss_pred CCcEEEEEEcCCCCCceEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEeCCe
Q 034173 7 SESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGK 60 (102)
Q Consensus 7 ~~~i~I~vK~~~~~~~~~l~v~~~~TV~~LK~~Ia~~~~~~ip~~~qrLi~~Gk 60 (102)
+..++|+|... -++ .+.|+++.+..+|.++|++ +.+++++..+|-|+..
T Consensus 3 ~~~~~VKV~~~--~tv-airvp~~~~y~~L~~~l~~--kL~l~~~~~~LsYk~~ 51 (83)
T 1oey_A 3 HMAYTLKVHYK--YTV-VMKTQPGLPYSQVRDMVSK--KLELRLEHTKLSYRPR 51 (83)
T ss_dssp SSCEEEEEESS--SEE-EEEECTTCCHHHHHHHHHH--HTTCCGGGCCEEECCT
T ss_pred CCcEEEEEEEE--EEE-EEECCCCCCHHHHHHHHHH--HhCCCcceeEEEeeCC
Confidence 34588888875 355 8999999999999999999 9999999999999764
No 127
>1s3s_G P47 protein; AAA ATPase, protein-protein complex, UBX domain, protein binding; HET: ADP; 2.90A {Rattus norvegicus} SCOP: d.15.1.2 PDB: 1i42_A 1jru_A
Probab=95.59 E-value=0.032 Score=37.04 Aligned_cols=68 Identities=16% Similarity=0.247 Sum_probs=52.5
Q ss_pred CcEEEEEEcCCCCCceEEEecCCCcHHHHHHHHHhccCCCCCCCceEEE--eCCeecCCCCCCCCCCccccCCCCC
Q 034173 8 ESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLV--FRGKVLDDTQDDDDRDDVYLQLSNG 81 (102)
Q Consensus 8 ~~i~I~vK~~~~~~~~~l~v~~~~TV~~LK~~Ia~~~~~~ip~~~qrLi--~~Gk~L~D~~t~~~~~L~~~~I~~g 81 (102)
...+|.||.++|+.+ .-....+.||.+|.+-|.. ...++......|+ |--|.+.| .+.+|.+.|+.+.
T Consensus 51 ~~t~IqIRlpdG~rl-~~rF~~~~tl~~v~~fV~~-~~~~~~~~~f~L~t~fPrk~l~d----~~~TL~eagL~ps 120 (127)
T 1s3s_G 51 PTTNIQIRLADGGRL-VQKFNHSHRISDIRLFIVD-ARPAMAATSFVLMTTFPNKELAD----ENQTLKEANLLNA 120 (127)
T ss_dssp CCCCEEEEETTTTEE-EEECCSSCBHHHHHHHHHH-HCSGGGTSCEEEEETTTTEECCS----TTCBHHHHTCSSC
T ss_pred CcEEEEEECCCCCEE-EEEeCCCCCHHHHHHHHHH-hCcCCCCCCeEEecCCCCCCCCC----CCCcHHHCCCcCc
Confidence 358899999999987 7789999999999999986 1223445667776 56788864 2456999999984
No 128
>2daj_A KIAA0977 protein, COBL-like 1; ubiquitin-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.54 E-value=0.042 Score=34.86 Aligned_cols=76 Identities=14% Similarity=0.133 Sum_probs=58.2
Q ss_pred CcEEEEEEcCCCCCceEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEe---CCeecCCCCCCCCCCccccCCCCCCEE
Q 034173 8 ESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVF---RGKVLDDTQDDDDRDDVYLQLSNGGNI 84 (102)
Q Consensus 8 ~~i~I~vK~~~~~~~~~l~v~~~~TV~~LK~~Ia~~~~~~ip~~~qrLi~---~Gk~L~D~~t~~~~~L~~~~I~~g~ti 84 (102)
.++.+-|..+..+.. .+.|+|..++.+|--.|.+ +..+.|+.--|.- .+..|+ =+++|.+|||++ +
T Consensus 9 ~TvRLvVNy~~tQKt-VvRVSP~vpL~ellp~IC~--Kcefdp~~~~Ll~d~~~~e~Ld-----LskSLndlgirE---L 77 (91)
T 2daj_A 9 KTVRVVINFKKTQKT-IVRVSPHASLQELAPIICS--KCEFDPLHTLLLKDYQSQEPLD-----LTKSLNDLGLRE---L 77 (91)
T ss_dssp SCEEEEEEETTTEEE-EEEECSSSCTTTHHHHHHH--HTTCCTTSEEEESCSSCCCBCC-----TTSCHHHHTCSE---E
T ss_pred cEEEEEEeecCccee-EEEeCCCCcHHHHHHHHhh--cccCChhhEEEecCCCCCcccc-----hhcchhhhhhhh---h
Confidence 578888887777666 7999999999999999999 9999999988864 344443 345699999997 5
Q ss_pred EEEEecCCCcee
Q 034173 85 NISLFNLDDLSF 96 (102)
Q Consensus 85 ~l~~~~~~~~~~ 96 (102)
+. +....+|+
T Consensus 78 ya--~d~~~e~~ 87 (91)
T 2daj_A 78 YA--MDVNRESG 87 (91)
T ss_dssp EE--EECCCCCC
T ss_pred he--eccccccC
Confidence 54 33334444
No 129
>3kuz_A Plexin-C1; structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=94.96 E-value=0.14 Score=34.29 Aligned_cols=80 Identities=20% Similarity=0.182 Sum_probs=49.1
Q ss_pred CcEEEEEEc---CCCC-----CceEEEecCCCcHHHHHHHHHhccC--CCCC----CCceEEEe----CCeecCCCC-CC
Q 034173 8 ESVEITVKT---IGPA-----PPSRLSVSSPIKVRDLRKLIATSSA--NHLP----IENLRLVF----RGKVLDDTQ-DD 68 (102)
Q Consensus 8 ~~i~I~vK~---~~~~-----~~~~l~v~~~~TV~~LK~~Ia~~~~--~~ip----~~~qrLi~----~Gk~L~D~~-t~ 68 (102)
.++++.+-. ..+. ....+.|-..+||.++|++|-.+.- .++| ++...|.+ .|+.|.|.. +.
T Consensus 18 ~tLtL~vv~~~~~~~~~~~~~~~v~VkVLdCDTItQVKEKILdavYk~k~~pys~r~~d~dLEwr~g~~~~~L~D~D~tS 97 (126)
T 3kuz_A 18 GTVALNVVFEKIPENESADVCRNISVNVLDCDTIGQAKEKIFQAFLSKNGSPYGLQLNEIGLELQMGTRQKELLDIDSSS 97 (126)
T ss_dssp CEEEEEEEECCCTTSSCSCSCCEEEEEEETTCBHHHHHHHHHHHHHHHHSSCCSSCGGGEEEEEEETTEEEEECSSCTTC
T ss_pred EEEEEEEEeeccCCCcCcCcCCceEeeeecCCcHHHHHHHHHHHHhccCCCcCCCCccccceEEecCCCcceeeccCCcc
Confidence 456666665 3221 1125566688999999999976433 3444 45566665 234554432 11
Q ss_pred -C--C-----CCccccCCCCCCEEEEE
Q 034173 69 -D--D-----RDDVYLQLSNGGNINIS 87 (102)
Q Consensus 69 -~--~-----~~L~~~~I~~g~ti~l~ 87 (102)
. + -||+.|+|.||.+|-+.
T Consensus 98 ~~~e~~wkrLNTL~HY~V~Dgatlal~ 124 (126)
T 3kuz_A 98 VILEDGITKLNTIGHYEISNGSTIKVF 124 (126)
T ss_dssp CBCTTSCBCCCBTGGGTCCTTCEEEEE
T ss_pred eEecCCeeEeccccccCCCCCCEEEEe
Confidence 1 1 47999999999999754
No 130
>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1
Probab=94.38 E-value=0.44 Score=29.59 Aligned_cols=67 Identities=18% Similarity=0.303 Sum_probs=43.9
Q ss_pred CcEEEEEEcCC------CCCceEEEecCCCcHHHHHHHHHhccCCC-C----------CCCceEEEeCCeecCCCCCCCC
Q 034173 8 ESVEITVKTIG------PAPPSRLSVSSPIKVRDLRKLIATSSANH-L----------PIENLRLVFRGKVLDDTQDDDD 70 (102)
Q Consensus 8 ~~i~I~vK~~~------~~~~~~l~v~~~~TV~~LK~~Ia~~~~~~-i----------p~~~qrLi~~Gk~L~D~~t~~~ 70 (102)
.+|+|+||... |..-..++++...||.+|.+.+.. +.. + ......+..+|+....
T Consensus 8 ~~~~v~V~~FA~lre~~g~~~~~~e~~~~~Tv~~Ll~~L~~--~~p~l~~~l~~~~g~~~~~v~v~VNg~~v~~------ 79 (98)
T 1vjk_A 8 GSVKVKVKYFARFRQLAGVDEEEIELPEGARVRDLIEEIKK--RHEKFKEEVFGEGYDEDADVNIAVNGRYVSW------ 79 (98)
T ss_dssp -CEEEEEEECTHHHHHHSSSEEEEEECTTCBHHHHHHHHHH--HCGGGGGSCBCSSSCTTSSBEEEETTBCCCT------
T ss_pred CcEEEEEEEhHHHHHHhCCCeEEEECCCCCCHHHHHHHHHh--HChhHHHHhhccccccCCcEEEEECCEECCC------
Confidence 46888888542 322226788888999999999976 321 1 1234556678877742
Q ss_pred CCccccCCCCCCEEEE
Q 034173 71 RDDVYLQLSNGGNINI 86 (102)
Q Consensus 71 ~~L~~~~I~~g~ti~l 86 (102)
+.-|++||.|.+
T Consensus 80 ----~~~L~dGDeV~i 91 (98)
T 1vjk_A 80 ----DEELKDGDVVGV 91 (98)
T ss_dssp ----TCBCCTTCEEEE
T ss_pred ----CCCCCCCCEEEE
Confidence 346999999876
No 131
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=94.06 E-value=0.031 Score=37.40 Aligned_cols=31 Identities=13% Similarity=0.250 Sum_probs=28.8
Q ss_pred EEEecCCCcHHHHHHHHHhccCCCCCCCceEEE
Q 034173 24 RLSVSSPIKVRDLRKLIATSSANHLPIENLRLV 56 (102)
Q Consensus 24 ~l~v~~~~TV~~LK~~Ia~~~~~~ip~~~qrLi 56 (102)
.+.|..++|+.+||.+|++ ..|+|+++|||-
T Consensus 59 ~~rv~k~~~~~~~~~~va~--~lg~~~~~~RlW 89 (130)
T 2kvr_A 59 VFKVLKNSSLAEFVQSLSQ--TMGFPQDQIRLW 89 (130)
T ss_dssp EEECCTTSBHHHHHHHHHH--HHCCCGGGCEEE
T ss_pred eEEEeccCcHHHHHHHHHH--HhCCCcccEEEE
Confidence 6788889999999999998 999999999995
No 132
>1wgk_A Riken cDNA 2900073H19 protein; THis domain, ubiqutin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.3.3 PDB: 1xo3_A
Probab=93.72 E-value=0.85 Score=29.55 Aligned_cols=35 Identities=17% Similarity=0.283 Sum_probs=24.4
Q ss_pred CcEEEEEEcCCC------CC-ceEEEecC---CCcHHHHHHHHHh
Q 034173 8 ESVEITVKTIGP------AP-PSRLSVSS---PIKVRDLRKLIAT 42 (102)
Q Consensus 8 ~~i~I~vK~~~~------~~-~~~l~v~~---~~TV~~LK~~Ia~ 42 (102)
++|+|+|+...+ .. ...++++. ..||.+|-+.+.+
T Consensus 10 ~~M~v~V~~~~~Lr~~~g~~~~~~vel~~~~~~~TV~~Ll~~L~~ 54 (114)
T 1wgk_A 10 APLCVKVEFGGGAELLFDGVKKHQVALPGQEEPWDIRNLLVWIKK 54 (114)
T ss_dssp CCEEEEEEECTTTGGGTTTCSEEEEEECCCSSCCBHHHHHHHHTT
T ss_pred CCcEEEEEEchHHHHHhCCceEEEEEeCCCCCCCCHHHHHHHHHH
Confidence 569999996644 21 11477773 3699999999876
No 133
>3hm6_X Plexin-B1; structural genomics consortium, SGC, membrane, transmembrane receptor, cell membrane, glycoprotein, phosphoprotein; 2.40A {Homo sapiens} PDB: 3sua_D* 3su8_X*
Probab=93.00 E-value=0.65 Score=38.51 Aligned_cols=82 Identities=9% Similarity=0.096 Sum_probs=52.4
Q ss_pred CcEEEEEEcCCC------CCceEEEecCCCcHHHHHHHHHhccCCCCC------CCceEEEe----CCe-ecCCCCCCC-
Q 034173 8 ESVEITVKTIGP------APPSRLSVSSPIKVRDLRKLIATSSANHLP------IENLRLVF----RGK-VLDDTQDDD- 69 (102)
Q Consensus 8 ~~i~I~vK~~~~------~~~~~l~v~~~~TV~~LK~~Ia~~~~~~ip------~~~qrLi~----~Gk-~L~D~~t~~- 69 (102)
.++++.|-...| ..+ .+.|-..+||.++|++|-.+.-.|.| ++...|.+ .|+ +|.|.+..-
T Consensus 256 ~~ltL~v~~~~~~~~~~~~~i-~VkVLdCDTItQVKeKiLDavYk~~pyS~rP~~~~~dLEwr~g~~g~~iL~D~D~ts~ 334 (644)
T 3hm6_X 256 RPLTLNALLAVGPGAGEAQGV-PVKVLDCDTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTSE 334 (644)
T ss_dssp CEEEEEEECC-------CCCE-EEEEETTSBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEECSSSCEEEECSSSTTCC
T ss_pred eeEEEEEeecCccccCCCCce-eeEeeccCcHHHHHHHHHHHHHcCCCcccCCCCCCcceEEeeCCCCceeecccCccce
Confidence 457777755432 223 66777899999999999865545544 45566665 233 355543110
Q ss_pred -------CCCccccCCCCCCEEEEEEec
Q 034173 70 -------DRDDVYLQLSNGGNINISLFN 90 (102)
Q Consensus 70 -------~~~L~~~~I~~g~ti~l~~~~ 90 (102)
=-||.+|+|.||.+|-+.-+.
T Consensus 335 ~~~~wkrLNTL~HY~V~dga~v~L~p~~ 362 (644)
T 3hm6_X 335 VQGLWRRLNTLQHYKVPDGATVALVPCL 362 (644)
T ss_dssp EETTEEECCBTTTTTCCTTCEEEEEEC-
T ss_pred ecCcceeecchhhcCCCCCcEEEEEecc
Confidence 146999999999999875443
No 134
>3onh_A Ubiquitin-activating enzyme E1-like; ligase, SUMO conjugation, UBC9; 1.60A {Saccharomyces cerevisiae} PDB: 3ong_A
Probab=92.33 E-value=0.29 Score=32.82 Aligned_cols=63 Identities=27% Similarity=0.261 Sum_probs=45.3
Q ss_pred EEEecC----CCcHHHHHHHHHhccCCCCCCCceEEEe--CCeecCCCCCCCC--CCccccCCCCCCEEEEEEe
Q 034173 24 RLSVSS----PIKVRDLRKLIATSSANHLPIENLRLVF--RGKVLDDTQDDDD--RDDVYLQLSNGGNINISLF 89 (102)
Q Consensus 24 ~l~v~~----~~TV~~LK~~Ia~~~~~~ip~~~qrLi~--~Gk~L~D~~t~~~--~~L~~~~I~~g~ti~l~~~ 89 (102)
.+.|++ .+|..+|=+.+.. +.|+.. ...+.- ..+.|-|-.-+|+ ++|++.|+++|+.|.++=.
T Consensus 9 vl~v~~~dl~~~TL~dLV~~l~~--~~gy~~-eiSV~~~~~~rLLyD~DfDDnl~k~L~dLgv~~gsfLtv~DE 79 (127)
T 3onh_A 9 VIKLSSDCLNKMKLSDFVVLIRE--KYSYPQ-DISLLDASNQRLLFDYDFEDLNDRTLSEINLGNGSIILFSDE 79 (127)
T ss_dssp EEEECHHHHHHCBHHHHHHHHHH--HHTCCS-SEEEEETTTTEEEEETTBCTTTTSBTTTTTCCTTCEEEEEES
T ss_pred EEEeCcccccccCHHHHHHHHHH--hcCCCC-cEEEEecCCCCeEeCCCccccccCcHHHcCcCCCcEEEEEcc
Confidence 466764 3799998888877 777764 555542 4566666665555 8899999999999988744
No 135
>2juo_A GA-binding protein alpha chain; OST, ubiquitin, transcription factor, ensemble, DNA-binding, nucleus, transcription regulation; NMR {Mus musculus}
Probab=92.13 E-value=0.28 Score=30.90 Aligned_cols=58 Identities=12% Similarity=0.229 Sum_probs=50.3
Q ss_pred EEecCCCcHHHHHHHHHhccCCCCCCCceEEEeCCeecCCCCCCCCCCccccCCCCCCEEEEEEe
Q 034173 25 LSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGGNINISLF 89 (102)
Q Consensus 25 l~v~~~~TV~~LK~~Ia~~~~~~ip~~~qrLi~~Gk~L~D~~t~~~~~L~~~~I~~g~ti~l~~~ 89 (102)
-.++-..++..||+.++. +.+++-..-.+..++..|.++++ |.+-+++-...|.+++.
T Consensus 7 qhmDI~epL~~Lk~LLe~--Rl~i~L~~y~f~LQd~~L~~~k~-----LvdQcVqgeGlVQinvq 64 (89)
T 2juo_A 7 QAIDINEPIGNLKKLLEP--RLQCSLDAHEICLQDIQLDPDRS-----LFDQGVKTDGTVQLSVQ 64 (89)
T ss_dssp EEEESSSBGGGHHHHSHH--HHCSCCSSCEEEETTEECCTTSB-----TTTSSCCCCSEEEEEEE
T ss_pred hhccccCcHHHHHHHHHH--HhcCCcccCeEEeeccccCCCcc-----HHHhhcccccEEEEEEE
Confidence 356777889999999999 99999999888889999988777 99999999998887763
No 136
>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}
Probab=91.73 E-value=0.55 Score=35.00 Aligned_cols=47 Identities=15% Similarity=0.260 Sum_probs=37.5
Q ss_pred EEcCCCCCceEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEeCCeec
Q 034173 14 VKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVL 62 (102)
Q Consensus 14 vK~~~~~~~~~l~v~~~~TV~~LK~~Ia~~~~~~ip~~~qrLi~~Gk~L 62 (102)
+-.+.......+.+.+..|+.++++.+++ .++++++.|.|++.+..+
T Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~t~i~~~~q~~l~~~~~~ 361 (396)
T 4eut_A 315 VFSLQQMTAHKIYIHSYNTATIFHELVYK--QTKIISSNQELIYEGRRL 361 (396)
T ss_dssp EEETTTTEEEEEEECTTCBHHHHHHHHHH--HHCCCSTTEEEESSSSEE
T ss_pred EEEeccceEEEEEcCchhHHHHHHHHHHH--hcCCChhhhHHHhcCCCC
Confidence 33344444446788899999999999999 999999999999998433
No 137
>3ig3_A Plxna3 protein; plexin intracellular GAP RBD inactive, membrane, transmembra membrane protein, signaling protein; 1.99A {Mus musculus} PDB: 3ryt_A*
Probab=91.18 E-value=1.3 Score=36.57 Aligned_cols=83 Identities=10% Similarity=0.157 Sum_probs=53.6
Q ss_pred CcEEEEEEcCCCC--CceEEEecCCCcHHHHHHHHHhccCCCCC------CCceEEEe----CCe-ecCCCCCCC-----
Q 034173 8 ESVEITVKTIGPA--PPSRLSVSSPIKVRDLRKLIATSSANHLP------IENLRLVF----RGK-VLDDTQDDD----- 69 (102)
Q Consensus 8 ~~i~I~vK~~~~~--~~~~l~v~~~~TV~~LK~~Ia~~~~~~ip------~~~qrLi~----~Gk-~L~D~~t~~----- 69 (102)
.++++.+-...+. ....+.|-..+||.++|++|-.+.-.+.| ++...|.+ .|+ +|.|.....
T Consensus 232 ~~ltL~v~~~~~~~~~~i~vkVLdCDTItQVKeKiLdavYk~~pyS~rP~~~~~dLEwr~g~~g~~iL~D~D~ts~~~~~ 311 (627)
T 3ig3_A 232 KTLTLHCVCPESEGSAQVPVKVLNCDSITQAKDKLLDTVYKGIPYSQRPKAEDMDLEWRQGRMARIILQDEDITTKIECD 311 (627)
T ss_dssp CEEEEEEECTTTC--CEEEEEEETTCBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEESCSSCEEEECSSSTTCCEETT
T ss_pred eeEEEEEeccCCCCCCceeeEeeccCcHHHHHHHHHHHHHcCCCcccCCCCCccceeEeeCCCCceeeccCCccccccCc
Confidence 4677777655432 22256667889999999999875544544 55677765 233 355433110
Q ss_pred ---CCCccccCCCCCCEEEEEEec
Q 034173 70 ---DRDDVYLQLSNGGNINISLFN 90 (102)
Q Consensus 70 ---~~~L~~~~I~~g~ti~l~~~~ 90 (102)
=-||.+|+|.||.+|-+.-+.
T Consensus 312 wkrLNTL~HY~V~Dga~v~L~p~~ 335 (627)
T 3ig3_A 312 WKRVNSLAHYQVTDGSLVALVPKQ 335 (627)
T ss_dssp EEECCBTTTTTCCTTCEEEEEEC-
T ss_pred eeEecchhhcCCCCCceEEEEecc
Confidence 146999999999999876544
No 138
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}
Probab=91.01 E-value=0.42 Score=27.63 Aligned_cols=62 Identities=13% Similarity=0.073 Sum_probs=39.1
Q ss_pred EEEEEEcCCCCCceEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEeCCeecCCCCCCCCCCccccCCCCCCEEEEEE
Q 034173 10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGGNINISL 88 (102)
Q Consensus 10 i~I~vK~~~~~~~~~l~v~~~~TV~~LK~~Ia~~~~~~ip~~~qrLi~~Gk~L~D~~t~~~~~L~~~~I~~g~ti~l~~ 88 (102)
|.|+|..++|+. .+++.+.|+.+|-+.+.. . ++....-...+|+..+ | ++-|.+|+.|-+.-
T Consensus 1 m~i~i~~p~g~~---~~~~~g~T~~dla~~i~~--~--l~~~~vaa~vNg~lvd---------l-~~~L~~~~~Veivt 62 (73)
T 2kmm_A 1 MEVMVFTPKGEI---KRLPQGATALDFAYSLHS--D--LGDHCIGAKVNHKLVP---------L-SYVLNSGDQVEVLS 62 (73)
T ss_dssp CCEEEECTTCCE---EEECTTCBHHHHHHHHCS--H--HHHTEEEEEETTEECC---------T-TCBCCSSSBEEEEE
T ss_pred CeEEEEcCCCCE---EEcCCCCcHHHHHHHHhh--c--cccceEEEEECCEEeC---------C-CcCcCCCCEEEEEE
Confidence 567777777753 678889999999877732 1 1112222245777763 2 35677888876643
No 139
>1fm0_D Molybdopterin convertin factor, subunit 1; molybdenum cofactor biosynthesis, transferase; 1.45A {Escherichia coli} SCOP: d.15.3.1 PDB: 1fma_D 1jw9_D 1jwa_D* 1jwb_D* 3bii_D 1nvi_D
Probab=90.68 E-value=1.1 Score=26.27 Aligned_cols=47 Identities=17% Similarity=0.196 Sum_probs=32.6
Q ss_pred cCCCcHHHHHHHHHhccCCC-----CCCCceEEEeCCeecCCCCCCCCCCccccCCCCCCEEEE
Q 034173 28 SSPIKVRDLRKLIATSSANH-----LPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGGNINI 86 (102)
Q Consensus 28 ~~~~TV~~LK~~Ia~~~~~~-----ip~~~qrLi~~Gk~L~D~~t~~~~~L~~~~I~~g~ti~l 86 (102)
+...||.+|.+.+.. ... ++.....+..+|+.... +.-+++||.|.+
T Consensus 23 ~~~~tv~~ll~~L~~--~~p~~~~~l~~~~~~v~vN~~~v~~----------~~~l~~gD~V~i 74 (81)
T 1fm0_D 23 ADFPTVEALRQHMAA--QSDRWALALEDGKLLAAVNQTLVSF----------DHPLTDGDEVAF 74 (81)
T ss_dssp SCCSBHHHHHHHHHT--TCHHHHHHHCCTTCEEEETTEECCT----------TCBCCTTCEEEE
T ss_pred CCCCCHHHHHHHHHH--HChhHHHHhcCCCEEEEECCEECCC----------CCCCCCCCEEEE
Confidence 467899999999975 421 22234467788888742 235899999876
No 140
>1y8x_B Ubiquitin-activating enzyme E1C; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: c.111.1.2 PDB: 3fn1_A
Probab=90.68 E-value=0.82 Score=29.11 Aligned_cols=62 Identities=13% Similarity=0.296 Sum_probs=40.5
Q ss_pred EEEecCCCcHHHHHHHHHhccCCCCCCC-----------ceEEEeCC-eecCCCCCCC--CCCccccCCCCCCEEEEEE
Q 034173 24 RLSVSSPIKVRDLRKLIATSSANHLPIE-----------NLRLVFRG-KVLDDTQDDD--DRDDVYLQLSNGGNINISL 88 (102)
Q Consensus 24 ~l~v~~~~TV~~LK~~Ia~~~~~~ip~~-----------~qrLi~~G-k~L~D~~t~~--~~~L~~~~I~~g~ti~l~~ 88 (102)
.+++++++|+.+|-+.+.+ ...+.-. ...|+.++ ..|+. .|.. +++|.+.|+.+|+.|+|+=
T Consensus 8 ~l~v~~~~TL~~lid~L~~--~p~~qlk~PSltt~~~~~~k~LYmq~pp~Lee-~Tr~NL~k~l~eLgl~~g~ei~VtD 83 (98)
T 1y8x_B 8 NIQFSPSAKLQEVLDYLTN--SASLQMKSPAITATLEGKNRTLYMQSVTSIEE-RTRPNLSKTLKELGLVDGQELAVAD 83 (98)
T ss_dssp CEECCTTCBHHHHHHHHHH--CTTCCCSSCEEEEEETTEEEEEECSSCHHHHH-HHHHHHHSBSGGGTCCTTCEEEEEC
T ss_pred EEEECCchhHHHHHHHHHh--ChHhhccCCeeeeecCCCCCeEEEeCcHHHHH-HhHhhhhCCHHHhCCCCCCEEEEEC
Confidence 6899999999999999988 4332222 34444444 22221 0100 1459999999999999853
No 141
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=90.01 E-value=1.2 Score=27.98 Aligned_cols=79 Identities=10% Similarity=0.090 Sum_probs=49.6
Q ss_pred CCcEEEEEEcCCCCCceEEEecCCCcHHHHHHHHHhccCCCCCCCc-eEEEeCCeecCCCCC-CCC----CCccccCCCC
Q 034173 7 SESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIEN-LRLVFRGKVLDDTQD-DDD----RDDVYLQLSN 80 (102)
Q Consensus 7 ~~~i~I~vK~~~~~~~~~l~v~~~~TV~~LK~~Ia~~~~~~ip~~~-qrLi~~Gk~L~D~~t-~~~----~~L~~~~I~~ 80 (102)
+..|+|++-.. |... .+.++++.+..+|.+++.+ ..+++.++ ..+-|.... .|.-+ ..+ ..|.-|.+..
T Consensus 4 ~~~vkvK~~~~-gdi~-~~~v~~~i~~~~L~~kv~~--~~~~~~~~~f~lky~DEe-GD~itisSd~EL~eAl~l~~~n~ 78 (89)
T 1vd2_A 4 GSQVRVKAYYR-GDIM-ITHFEPSISFEGLCNEVRD--MCSFDNEQLFTMKWIDEE-GDPCTVSSQLELEEAFRLYELNK 78 (89)
T ss_dssp SSCEEEEEESS-SCEE-EEEECTTCCHHHHHHHHHH--HTTCCSSCCEEEEECCSS-SCCEECCSHHHHHHHHHHHHHTS
T ss_pred CCeEEEEEEeC-CeEE-EEECCCCCCHHHHHHHHHH--HhCCCCCCeEEEEEECCC-CCcccccCHHHHHHHHHHHHccC
Confidence 45577777664 4544 8999999999999999998 88877555 777665432 11111 000 2234445555
Q ss_pred CCEEEEEEec
Q 034173 81 GGNINISLFN 90 (102)
Q Consensus 81 g~ti~l~~~~ 90 (102)
...+.+.|.+
T Consensus 79 ~~~l~ihvf~ 88 (89)
T 1vd2_A 79 DSELLIHVFP 88 (89)
T ss_dssp CCCEEEEEEE
T ss_pred CCCEEEEEcc
Confidence 6666666654
No 142
>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A
Probab=89.90 E-value=1.9 Score=25.85 Aligned_cols=51 Identities=16% Similarity=0.227 Sum_probs=35.3
Q ss_pred EEEecCCCcHHHHHHHHHhccCCC-C-----C-----CCceEEEeCCeecCCCCCCCCCCccccCCCCCCEEEE
Q 034173 24 RLSVSSPIKVRDLRKLIATSSANH-L-----P-----IENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGGNINI 86 (102)
Q Consensus 24 ~l~v~~~~TV~~LK~~Ia~~~~~~-i-----p-----~~~qrLi~~Gk~L~D~~t~~~~~L~~~~I~~g~ti~l 86 (102)
.++++...||.+|.+.+.. +.. + . ....++..+|+.... +.-+++||.|.+
T Consensus 21 ~~~~~~~~Tv~~ll~~L~~--~~p~~~~~~l~~~g~l~~~~~v~VN~~~v~~----------~~~l~~gDeV~i 82 (89)
T 3po0_A 21 RVDVDGDATVGDALDALVG--AHPALESRVFGDDGELYDHINVLRNGEAAAL----------GEATAAGDELAL 82 (89)
T ss_dssp EEECCTTCBHHHHHHHHHH--HCGGGHHHHBCTTSCBCTTSEEEETTEECCT----------TSBCCTTCEEEE
T ss_pred EEECCCCCcHHHHHHHHHH--HCcHHHHHHhccCCcccccEEEEECCEECCC----------CcccCCCCEEEE
Confidence 6778788999999999986 431 1 0 012466678887743 335899999876
No 143
>2k9x_A Tburm1, uncharacterized protein; unknown function; NMR {Trypanosoma brucei}
Probab=88.97 E-value=0.24 Score=32.08 Aligned_cols=71 Identities=21% Similarity=0.263 Sum_probs=39.0
Q ss_pred cEEEEEEcCCC------CCceEEEecC----CCcHHHHHHHHHhccCCCCCCCceEEEe-CC--e------ecCCCCCCC
Q 034173 9 SVEITVKTIGP------APPSRLSVSS----PIKVRDLRKLIATSSANHLPIENLRLVF-RG--K------VLDDTQDDD 69 (102)
Q Consensus 9 ~i~I~vK~~~~------~~~~~l~v~~----~~TV~~LK~~Ia~~~~~~ip~~~qrLi~-~G--k------~L~D~~t~~ 69 (102)
.|+|+||...+ +.. .++++. .+||.+|=+.+++ . ++..+-+|.. .| . +|-|+.-
T Consensus 4 ~m~v~V~f~g~l~~l~g~~~-~v~l~~~~g~~~TV~dLl~~L~~--~--~~~~r~~lf~~~g~~~lrpgIlVLVNg~d-- 76 (110)
T 2k9x_A 4 HNHITVQFAGGCELLFAKQT-SLQLDGVVPTGTNLNGLVQLLKT--N--YVKERPDLLVDQTGQTLRPGILVLVNSCD-- 76 (110)
T ss_dssp SSCCEEEEESSCGGGTTSCS-EECCCCSCGGGCCHHHHHHHHTT--T--TCCSCHHHHBCSSSSSBCTTEEEEESSSB--
T ss_pred ccEEEEEEEecHHHHhCCeE-EEEeCCcCCCCccHHHHHHHHHH--H--ccccchhhEecCCCcccCCCeEEEECCee--
Confidence 47777776544 433 677773 2599998888865 3 3444444431 23 1 2322211
Q ss_pred CCCc--cccCCCCCCEEEE
Q 034173 70 DRDD--VYLQLSNGGNINI 86 (102)
Q Consensus 70 ~~~L--~~~~I~~g~ti~l 86 (102)
=+-| .+|-+++||.|.+
T Consensus 77 ~e~l~gldt~L~dgD~V~f 95 (110)
T 2k9x_A 77 AEVVGGMDYVLNDGDTVEF 95 (110)
T ss_dssp HHHHTSSCCCCCSSCEEEE
T ss_pred eeccCCcccCCCCcCEEEE
Confidence 0001 2467999999765
No 144
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=88.85 E-value=0.25 Score=39.72 Aligned_cols=31 Identities=13% Similarity=0.250 Sum_probs=29.0
Q ss_pred EEEecCCCcHHHHHHHHHhccCCCCCCCceEEE
Q 034173 24 RLSVSSPIKVRDLRKLIATSSANHLPIENLRLV 56 (102)
Q Consensus 24 ~l~v~~~~TV~~LK~~Ia~~~~~~ip~~~qrLi 56 (102)
.+.|...+|+.+||++||+ ..|+|+++|||-
T Consensus 39 ~~rv~k~~~~~~l~~~va~--~lg~~~~~~RlW 69 (530)
T 2ylm_A 39 VFKVLKNSSLAEFVQSLSQ--TMGFPQDQIRLW 69 (530)
T ss_dssp EEEEETTSBHHHHHHHHHH--HHTSCGGGEEEE
T ss_pred eEEEcCcCCHHHHHHHHHH--HhCcCcccEEEE
Confidence 6889999999999999998 999999999994
No 145
>2qjl_A URM1, ubiquitin-related modifier 1; ubiquitin-like protein, signaling protein; 1.44A {Saccharomyces cerevisiae} PDB: 2pko_A 2ax5_A
Probab=88.34 E-value=2.3 Score=26.27 Aligned_cols=33 Identities=21% Similarity=0.362 Sum_probs=22.2
Q ss_pred EEEEEEcC------C-CCCceEEEec--CCCcHHHHHHHHHh
Q 034173 10 VEITVKTI------G-PAPPSRLSVS--SPIKVRDLRKLIAT 42 (102)
Q Consensus 10 i~I~vK~~------~-~~~~~~l~v~--~~~TV~~LK~~Ia~ 42 (102)
|+|+||.. - |..-..++++ ...||.+|.+.+.+
T Consensus 2 M~i~V~~fa~lre~~~g~~~~~~~l~~~~~~Tv~~L~~~L~~ 43 (99)
T 2qjl_A 2 VNVKVEFLGGLDAIFGKQRVHKIKMDKEDPVTVGDLIDHIVS 43 (99)
T ss_dssp EEEEEEEETTGGGGTTTCCEEEEEECSCSCCBHHHHHHHHHH
T ss_pred cEEEEEEchHHHHHhCCCcEEEEecCCCCCCcHHHHHHHHHH
Confidence 66777633 1 3332245666 67899999999986
No 146
>2q5w_D Molybdopterin converting factor, subunit 1; MOCO, MPT synthase, MOAD, MOAE, transferase, molybdenum cofactor biosynthesis; 2.00A {Staphylococcus aureus} PDB: 2qie_B*
Probab=87.84 E-value=0.63 Score=27.21 Aligned_cols=50 Identities=8% Similarity=0.231 Sum_probs=35.0
Q ss_pred EEEecCCCcHHHHHHHHHhccCCCCCCCce--EEEeCCeecCCCCCCCCCCccccCCCCCCEEEE
Q 034173 24 RLSVSSPIKVRDLRKLIATSSANHLPIENL--RLVFRGKVLDDTQDDDDRDDVYLQLSNGGNINI 86 (102)
Q Consensus 24 ~l~v~~~~TV~~LK~~Ia~~~~~~ip~~~q--rLi~~Gk~L~D~~t~~~~~L~~~~I~~g~ti~l 86 (102)
.++++...||.+|.+.+.. ... ..... .+..+|+....+ .-+++||.|.+
T Consensus 19 ~~~~~~~~tv~~ll~~l~~--~~p-~~~~v~~~v~vNg~~v~~~----------~~L~~gD~V~i 70 (77)
T 2q5w_D 19 DIVLEQALTVQQFEDLLFE--RYP-QINNKKFQVAVNEEFVQKS----------DFIQPNDTVAL 70 (77)
T ss_dssp ECCCSSCEEHHHHHHHHHH--HCG-GGTTCCCEEEETTEEECTT----------SEECTTCEEEE
T ss_pred EEECCCCCCHHHHHHHHHH--HCc-chhcceEEEEECCEECCCC----------CCcCCCCEEEE
Confidence 4566778899999999876 321 11334 677889888532 35899999876
No 147
>2c7h_A RBBP6, retinoblastoma-binding protein 6, isoform 3; P53-associated, mRNA processing, splicing-associated, oesophageal cancer; NMR {Homo sapiens}
Probab=86.62 E-value=2.8 Score=26.12 Aligned_cols=40 Identities=15% Similarity=0.085 Sum_probs=31.1
Q ss_pred CcEEEEEEcCCCCCceEEEecC-CCcHHHHHHHHHhccCCC
Q 034173 8 ESVEITVKTIGPAPPSRLSVSS-PIKVRDLRKLIATSSANH 47 (102)
Q Consensus 8 ~~i~I~vK~~~~~~~~~l~v~~-~~TV~~LK~~Ia~~~~~~ 47 (102)
.+-.|+.|..+.+.+..+.++. ..+|.+||+.|.++.+.+
T Consensus 5 ~mS~V~YKFkS~k~~~~v~fdG~~Isv~dLKr~I~~~~kl~ 45 (86)
T 2c7h_A 5 SMSCVHYKFSSKLNYDTVTFDGLHISLCDLKKQIMGREKLK 45 (86)
T ss_dssp TBEEEEEEETTCSSEEEEEESSSEEEHHHHHHHHHHHHTCC
T ss_pred ceeEEEEEEeecCCcceEEEcCCEEEHHHHHHHHHHHhCCC
Confidence 3456888888888887888875 599999999999833443
No 148
>3dwg_C 9.5 kDa culture filtrate antigen CFP10A; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} PDB: 3dwm_A
Probab=86.23 E-value=3.9 Score=24.67 Aligned_cols=54 Identities=7% Similarity=0.095 Sum_probs=34.3
Q ss_pred EEEecCCCcHHHHHHHHHhccCCC-C-----C-------CCceEEEeCCeecCCCCCCCCCCccccCCCCCCEEEE
Q 034173 24 RLSVSSPIKVRDLRKLIATSSANH-L-----P-------IENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGGNINI 86 (102)
Q Consensus 24 ~l~v~~~~TV~~LK~~Ia~~~~~~-i-----p-------~~~qrLi~~Gk~L~D~~t~~~~~L~~~~I~~g~ti~l 86 (102)
.+++ ...||.+|.+.+.. +.. + . ....++..+|+...+... .+.-|++||+|.+
T Consensus 20 ~~~~-~~~Tv~~ll~~L~~--~~p~l~~~l~~~~~~g~~~~~~~v~VN~~~v~~~~~------~~~~L~~gDeV~i 86 (93)
T 3dwg_C 20 SVSA-SGDTLGAVISDLEA--NYSGISERLMDPSSPGKLHRFVNIYVNDEDVRFSGG------LATAIADGDSVTI 86 (93)
T ss_dssp EEEE-CCSBHHHHHHHHHH--HSTTHHHHHBCSSSTTSBCTTEEEEETTEEGGGTTG------GGCBCCTTCEEEE
T ss_pred EEec-CCCCHHHHHHHHHH--HChhHHHHHhccccCCcccCCEEEEECCEEccCcCC------CCcCCCCCCEEEE
Confidence 4664 56899999999986 431 0 0 113556678887743111 2456999999876
No 149
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Probab=85.79 E-value=2 Score=26.55 Aligned_cols=62 Identities=10% Similarity=0.058 Sum_probs=41.6
Q ss_pred CcEEEEEEcCCCCCceEEEecCC-CcHHHHHHHHHhccCCCCCCCceEEEeCCeecCCCCCCCCCCccccCCCCCCEEEE
Q 034173 8 ESVEITVKTIGPAPPSRLSVSSP-IKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGGNINI 86 (102)
Q Consensus 8 ~~i~I~vK~~~~~~~~~l~v~~~-~TV~~LK~~Ia~~~~~~ip~~~qrLi~~Gk~L~D~~t~~~~~L~~~~I~~g~ti~l 86 (102)
.+|+|+| +|+ .++++.. .||.+|.+.+. +++....+..+|+.+..+. ..+.-|++||.|-+
T Consensus 19 ~~M~I~v---NGe---~~el~~~~~Tv~dLL~~L~------~~~~~vaVavNg~iV~~~~------~~~~~L~dGD~Vei 80 (87)
T 1tyg_B 19 GRHMLQL---NGK---DVKWKKDTGTIQDLLASYQ------LENKIVIVERNKEIIGKER------YHEVELCDRDVIEI 80 (87)
T ss_dssp ---CEEE---TTE---EECCSSSCCBHHHHHHHTT------CTTSCCEEEETTEEECGGG------TTTSBCCSSSEEEE
T ss_pred cceEEEE---CCE---EEECCCCCCcHHHHHHHhC------CCCCCEEEEECCEECChhh------cCCcCCCCCCEEEE
Confidence 4566654 454 3577787 89999977663 5566677889999985322 33457999999976
Q ss_pred E
Q 034173 87 S 87 (102)
Q Consensus 87 ~ 87 (102)
.
T Consensus 81 ~ 81 (87)
T 1tyg_B 81 V 81 (87)
T ss_dssp E
T ss_pred E
Confidence 4
No 150
>1ip9_A BEM1 protein; ubiquitin alpha/beta roll, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1ipg_A 2kfk_A
Probab=85.79 E-value=3.2 Score=25.91 Aligned_cols=47 Identities=13% Similarity=-0.058 Sum_probs=32.9
Q ss_pred cEEEEEEcCCCCCceEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEeCCe
Q 034173 9 SVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGK 60 (102)
Q Consensus 9 ~i~I~vK~~~~~~~~~l~v~~~~TV~~LK~~Ia~~~~~~ip~~~qrLi~~Gk 60 (102)
.|+|+|=.-+ ..+ .+.|+++.+..+|+.+|.+ +..+. +.+-+.|++.
T Consensus 12 ~~KVK~yy~D-DIi-AIrvP~di~~~~L~dKi~~--RLk~~-~~~l~~ykde 58 (85)
T 1ip9_A 12 TTKIKFYYKD-DIF-ALMLKGDTTYKELRSKIAP--RIDTD-NFKLQTKLFD 58 (85)
T ss_dssp CEEEEECBTT-CCE-EEEECSCCCHHHHHHHHHH--HHTSS-CEEEEECCSS
T ss_pred ceEEEEEecC-cEE-EEECCCCCCHHHHHHHHHH--Hhccc-ceEEEEecCC
Confidence 4666665644 455 8999999999999999998 66652 3333345544
No 151
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=84.26 E-value=8.3 Score=28.83 Aligned_cols=78 Identities=10% Similarity=0.018 Sum_probs=52.7
Q ss_pred CcEEEEEEcCCCCCceEEEecCCCcHHHHHHHHHhccCCCCC-CCceEEEeCCe-----ecCCCCCCCCCCccccCCCCC
Q 034173 8 ESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLP-IENLRLVFRGK-----VLDDTQDDDDRDDVYLQLSNG 81 (102)
Q Consensus 8 ~~i~I~vK~~~~~~~~~l~v~~~~TV~~LK~~Ia~~~~~~ip-~~~qrLi~~Gk-----~L~D~~t~~~~~L~~~~I~~g 81 (102)
..+.+.|..++|... .+.+++.+|+.+|=+.|+. ..++. .+-.-|.+... ...++. +-++.+.+.+....
T Consensus 84 ~~~~~~V~l~dg~~~-~~~vd~~tt~~el~~~v~~--~l~L~e~~~FgL~~~~~~~~~~~~~~wL-~~~k~l~~q~~~~~ 159 (371)
T 3ivf_A 84 KQRPLKIRMLDGTVK-TIMVDDSKTVTDMLMTICA--RIGITNHDEYSLVRELMEEKKDDELNWL-DHGRTLREQGVEEH 159 (371)
T ss_dssp CEEEEEEECTTSCEE-EEEEETTSBHHHHHHHHHH--HTTCSCGGGEEEECCC----------CC-CTTSBTGGGTCCTT
T ss_pred ceeEEEEECcCCCEE-EEEECCCCCHHHHHHHHHH--HcCCCCccccEEEEEecccccchHHHHH-hcCchhHhhCCCCC
Confidence 458888999999887 8999999999999999998 77765 33466655321 111111 22344777666666
Q ss_pred CEEEEEEe
Q 034173 82 GNINISLF 89 (102)
Q Consensus 82 ~ti~l~~~ 89 (102)
.++++.++
T Consensus 160 ~~l~frvK 167 (371)
T 3ivf_A 160 ETLLLRRK 167 (371)
T ss_dssp CEEEEEEC
T ss_pred ceEEEEEE
Confidence 77777554
No 152
>1wgr_A Growth factor receptor-bound protein 7; RA domain, GRB7, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=83.93 E-value=3.4 Score=26.30 Aligned_cols=71 Identities=14% Similarity=0.145 Sum_probs=48.7
Q ss_pred CcEEEEEEcCCCCCceEEEecCCCcHHHHHHHHHhccCCCCCCCc-eEEE------eCCeecCCCCCCCCCCccc----c
Q 034173 8 ESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIEN-LRLV------FRGKVLDDTQDDDDRDDVY----L 76 (102)
Q Consensus 8 ~~i~I~vK~~~~~~~~~l~v~~~~TV~~LK~~Ia~~~~~~ip~~~-qrLi------~~Gk~L~D~~t~~~~~L~~----~ 76 (102)
..+-|+|=..+|+.. .+.|++++|+.++=+++++ +.++..+. .-|+ +--|.++|.+. |.+ +
T Consensus 8 ~k~vvkvf~~Dgssk-si~V~~~~Ta~dv~~~L~~--K~~~~~~~~WaLvE~~P~L~~ER~~EDHE~-----vvevl~~W 79 (100)
T 1wgr_A 8 RPHVVKVYSEDGACR-SVEVAAGATARHVCEMLVQ--RAHALSDETWGLVECHPHLALERGLEDHES-----VVEVQAAW 79 (100)
T ss_dssp SCEEEEEEETTSCEE-EEEECTTCCHHHHHHHHHC--SSSCCCCCCCCEEEEETTTTEEEEECSSSC-----HHHHHTTS
T ss_pred CCEEEEEEecCCCEE-EEEECCCCcHHHHHHHHHH--HcCCCCCCCeEEEEecCCCCcEEeccCchh-----HHHHHhhC
Confidence 445555666788776 8999999999999999998 88766443 3332 24477887775 443 4
Q ss_pred CCCCCCEEEE
Q 034173 77 QLSNGGNINI 86 (102)
Q Consensus 77 ~I~~g~ti~l 86 (102)
.+.....+++
T Consensus 80 ~~~s~nr~~F 89 (100)
T 1wgr_A 80 PVGGDSRFVF 89 (100)
T ss_dssp CSSSCCEEEE
T ss_pred ccCCCcEEEE
Confidence 4555556554
No 153
>1h4r_A Merlin; FERM, neurofibromatosis, NF2, structural protein, cytoskeleton, anti-oncogene; 1.8A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1isn_A 3u8z_A
Probab=80.59 E-value=9.8 Score=27.65 Aligned_cols=72 Identities=13% Similarity=0.163 Sum_probs=49.5
Q ss_pred CcEEEEEEcCCCCCceEEEecCCCcHHHHHHHHHhccCCCCCCC-ceEEEe--CCe--ecCCCCCCCCCCccccCCCCCC
Q 034173 8 ESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIE-NLRLVF--RGK--VLDDTQDDDDRDDVYLQLSNGG 82 (102)
Q Consensus 8 ~~i~I~vK~~~~~~~~~l~v~~~~TV~~LK~~Ia~~~~~~ip~~-~qrLi~--~Gk--~L~D~~t~~~~~L~~~~I~~g~ 82 (102)
..+.+.|..++| .. .+.+++.+|+.+|=+.|+. ..++... -.-|.| .|. .|+.++. |.+..++.+.
T Consensus 21 ~~~~~~V~lldg-~~-~~~v~~~t~~~el~~~v~~--~l~L~e~~~FgL~~~~~~~~~wL~~~~~-----i~~q~~~~~~ 91 (314)
T 1h4r_A 21 KTFTVRIVTMDA-EM-EFNCEMKWKGKDLFDLVCR--TLGLRETWFFGLQYTIKDTVAWLKMDKK-----VLDHDVSKEE 91 (314)
T ss_dssp CEEEEEEECSSC-EE-EEEEETTCBHHHHHHHHHH--HHTCCCGGGEEEEEEETTEEEECCTTSB-----GGGSSCCCSS
T ss_pred CeeEEEEEeCCc-eE-EEEeCCCCcHHHHHHHHHH--HhCCCCCccceEEEEeCCcCeeCCCccC-----HHHcCCCCCC
Confidence 568899999998 56 7999999999999999998 7776643 244444 332 3544444 7776655555
Q ss_pred EEEEEE
Q 034173 83 NINISL 88 (102)
Q Consensus 83 ti~l~~ 88 (102)
...+.+
T Consensus 92 ~~~l~f 97 (314)
T 1h4r_A 92 PVTFHF 97 (314)
T ss_dssp SEEEEE
T ss_pred CEEEEE
Confidence 444433
No 154
>2hj1_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; 2.10A {Haemophilus influenzae} SCOP: d.15.3.4
Probab=80.33 E-value=8.3 Score=24.19 Aligned_cols=69 Identities=12% Similarity=0.082 Sum_probs=44.3
Q ss_pred CcEEEEEEc--CCCCCceEEEecCCCcHHHHHHHHHhc-cCCCCCCCceEEEeCCeecCCCCCCCCCCccccCCCCCCEE
Q 034173 8 ESVEITVKT--IGPAPPSRLSVSSPIKVRDLRKLIATS-SANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGGNI 84 (102)
Q Consensus 8 ~~i~I~vK~--~~~~~~~~l~v~~~~TV~~LK~~Ia~~-~~~~ip~~~qrLi~~Gk~L~D~~t~~~~~L~~~~I~~g~ti 84 (102)
+.|+|.|-. +..+....++++.++||.++=++..-. ....+......+-..|+.... +.-+++||.|
T Consensus 11 ~~~~v~v~ya~p~rq~~~~~~v~~g~TV~daI~~~gi~~~~peIdl~~~~V~Vng~~v~~----------d~~L~dGDRV 80 (97)
T 2hj1_A 11 NQINIEIAYAFPERYYLKSFQVDEGITVQTAITQSGILSQFPEIDLSTNKIGIFSRPIKL----------TDVLKEGDRI 80 (97)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEETTCBHHHHHHHHTHHHHCTTCCTTTSEEEEEECSCCT----------TCBCCTTCEE
T ss_pred ceEEEEEEEeCCCCCEEEEEEcCCCCcHHHHHHHcCCCccCCcccccccEEEEcCEECCC----------CccCCCCCEE
Confidence 356666653 333334467889999999986665310 022345556778888888853 3358999998
Q ss_pred EE
Q 034173 85 NI 86 (102)
Q Consensus 85 ~l 86 (102)
-+
T Consensus 81 EI 82 (97)
T 2hj1_A 81 EI 82 (97)
T ss_dssp EE
T ss_pred EE
Confidence 75
No 155
>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2
Probab=80.30 E-value=4.5 Score=22.99 Aligned_cols=52 Identities=12% Similarity=0.133 Sum_probs=36.9
Q ss_pred EEEecCCCcHHHHHHHHHhccCCCCCCCceEEEeCCeecCCCCCCCCCCccccCCCCCCEEEEE
Q 034173 24 RLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGGNINIS 87 (102)
Q Consensus 24 ~l~v~~~~TV~~LK~~Ia~~~~~~ip~~~qrLi~~Gk~L~D~~t~~~~~L~~~~I~~g~ti~l~ 87 (102)
.++++...||.+|.+.+. +++..-.+..+|+.+.... ..+.-+++||.|.+.
T Consensus 9 ~~~~~~~~tv~~ll~~l~------~~~~~v~vavN~~~v~~~~------~~~~~L~~gD~v~i~ 60 (66)
T 1f0z_A 9 AMQCAAGQTVHELLEQLD------QRQAGAALAINQQIVPREQ------WAQHIVQDGDQILLF 60 (66)
T ss_dssp EECCCTTCCHHHHHHHHT------CCCSSEEEEETTEEECHHH------HTTCCCCTTEEECEE
T ss_pred EEEcCCCCcHHHHHHHcC------CCCCCEEEEECCEECCchh------cCCcCCCCCCEEEEE
Confidence 357788899999988774 3466667788999885211 223469999998763
No 156
>3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum}
Probab=80.14 E-value=2.8 Score=25.31 Aligned_cols=61 Identities=18% Similarity=0.126 Sum_probs=39.8
Q ss_pred EEEEEcCCCCCceEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEeCCeecCCCCCCCCCCccccCCCCCCEEEEEE
Q 034173 11 EITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGGNINISL 88 (102)
Q Consensus 11 ~I~vK~~~~~~~~~l~v~~~~TV~~LK~~Ia~~~~~~ip~~~qrLi~~Gk~L~D~~t~~~~~L~~~~I~~g~ti~l~~ 88 (102)
+|+|.+++|+ .++++.++|+.|+=..|.. ..+ -.-.--..+|+... | ++-+++|++|-+.-
T Consensus 7 ~i~v~tP~G~---~~~lp~GaT~~D~A~~Ih~--~lg--~~~v~AkVNG~~v~---------L-~~~L~~gd~VeIit 67 (78)
T 3hvz_A 7 EVFVFTPKGD---VISLPIGSTVIDFAYAIHS--AVG--NRMIGAKVDGRIVP---------I-DYKVKTGEIIDVLT 67 (78)
T ss_dssp EEEEECTTSC---EEEEETTCBHHHHHHHHCH--HHH--HTEEEEEETTEEEC---------T-TCBCCTTCBEEEEE
T ss_pred eEEEECCCCC---EEEecCCCCHHHHHHHhhh--hhh--cceEEEEECCEEcC---------C-CcccCCCCEEEEEc
Confidence 5778888885 4689999999998766642 111 11111234777763 3 35699999987654
No 157
>2l52_A Methanosarcina acetivorans SAMP1 homolog; beta-grAsp fold, protein binding, E1-like, SAMP activator, ELSA, adenylation, ubiquitin; NMR {Methanosarcina acetivorans}
Probab=79.92 E-value=3.3 Score=25.61 Aligned_cols=67 Identities=21% Similarity=0.311 Sum_probs=40.5
Q ss_pred cEEEEEEcCC------CCCceEEEecCCCcHHHHHHHHHhccCC-CCCC---------Cce-------EEEeCCeecCCC
Q 034173 9 SVEITVKTIG------PAPPSRLSVSSPIKVRDLRKLIATSSAN-HLPI---------ENL-------RLVFRGKVLDDT 65 (102)
Q Consensus 9 ~i~I~vK~~~------~~~~~~l~v~~~~TV~~LK~~Ia~~~~~-~ip~---------~~q-------rLi~~Gk~L~D~ 65 (102)
+|+|+|+... |.. .++++ ..||.+|.+.+.. +. ++.. ... .+..+|+.....
T Consensus 3 mm~v~V~~fa~lr~~~g~~--~~~l~-~~tv~~ll~~L~~--~~p~l~~~l~~~g~l~~~v~~~~~~~~v~VNg~~v~~~ 77 (99)
T 2l52_A 3 MAEVKVKLFANLREAAGTP--ELPLS-GEKVIDVLLSLTD--KYPALKYVIFEKGDEKSEILILCGSINILINGNNIRHL 77 (99)
T ss_dssp CCEEEEEECTHHHHHHSSS--EEEEE-CSSHHHHHHHHHH--HCGGGTTTSBCSCCTTSSCCCBCSSCEEEETTSCGGGT
T ss_pred ceEEEEEEeHHHHHHhCCC--eEEEe-CCcHHHHHHHHHH--HChhHHHHHhcccccccceeccccccEEEECCEEcccc
Confidence 4778888553 222 45666 6899999999976 32 1111 012 566777766321
Q ss_pred CCCCCCCccccCCCCCCEEEE
Q 034173 66 QDDDDRDDVYLQLSNGGNINI 86 (102)
Q Consensus 66 ~t~~~~~L~~~~I~~g~ti~l 86 (102)
. -.+.-+++||+|.+
T Consensus 78 ~------~~~~~L~~gD~V~i 92 (99)
T 2l52_A 78 E------GLETLLKDSDEIGI 92 (99)
T ss_dssp T------STTSCCCTTEEEEE
T ss_pred C------CCCCCCCCCCEEEE
Confidence 1 12346999999876
No 158
>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*
Probab=78.88 E-value=3.2 Score=34.30 Aligned_cols=42 Identities=12% Similarity=0.195 Sum_probs=35.5
Q ss_pred CCCCceEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEeCCeec
Q 034173 18 GPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVL 62 (102)
Q Consensus 18 ~~~~~~~l~v~~~~TV~~LK~~Ia~~~~~~ip~~~qrLi~~Gk~L 62 (102)
..+.. .+.+.++.|+.+|+..|++ .++++++.|.+++.....
T Consensus 320 ~~~~~-~~~i~~~~tl~~l~~~i~~--~T~i~~~~q~~~~~~~~~ 361 (676)
T 3qa8_A 320 SGRVH-TYPVTENENLQNLKSWLQQ--DTGIPEEEQELLQASGLA 361 (676)
T ss_dssp SSCCC-EEECCTTCCHHHHHHHHHT--TSCCCSTTCEEESSSSCC
T ss_pred ccccc-eeecCCCccHHHHHHHHHH--HhCCCHHHHHHHhccCCC
Confidence 33444 7899999999999999999 999999999999865444
No 159
>2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E
Probab=78.54 E-value=5.6 Score=22.49 Aligned_cols=50 Identities=4% Similarity=0.157 Sum_probs=36.1
Q ss_pred EEecCCCcHHHHHHHHHhccCCCCCCCceEEEeCCeecCCCCCCCCCCccccCCCCCCEEEEE
Q 034173 25 LSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGGNINIS 87 (102)
Q Consensus 25 l~v~~~~TV~~LK~~Ia~~~~~~ip~~~qrLi~~Gk~L~D~~t~~~~~L~~~~I~~g~ti~l~ 87 (102)
+++ ...||.+|.+.+. +++....+..+|+.+..+. -.+.-+++||.|-+.
T Consensus 9 ~~~-~~~tv~~ll~~l~------~~~~~v~vavN~~~v~~~~------~~~~~L~dgD~v~i~ 58 (64)
T 2cu3_A 9 RPL-EGKTLKEVLEEMG------VELKGVAVLLNEEAFLGLE------VPDRPLRDGDVVEVV 58 (64)
T ss_dssp ECC-TTCCHHHHHHHHT------BCGGGEEEEETTEEEEGGG------CCCCCCCTTCEEEEE
T ss_pred EEc-CCCcHHHHHHHcC------CCCCcEEEEECCEECCccc------cCCcCCCCCCEEEEE
Confidence 466 7789999988774 3466677788999885321 234579999999764
No 160
>2g1e_A Hypothetical protein TA0895; MOAD, molybdopterin, transferase; NMR {Thermoplasma acidophilum} PDB: 2k22_A
Probab=78.30 E-value=8.2 Score=22.77 Aligned_cols=55 Identities=9% Similarity=0.245 Sum_probs=36.2
Q ss_pred EEEecCCCcHHHHHHHHHhccCCC------C-----CCCceEEEeCCeecCCCCCCCCCCccccCCCCCCEEEE
Q 034173 24 RLSVSSPIKVRDLRKLIATSSANH------L-----PIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGGNINI 86 (102)
Q Consensus 24 ~l~v~~~~TV~~LK~~Ia~~~~~~------i-----p~~~qrLi~~Gk~L~D~~t~~~~~L~~~~I~~g~ti~l 86 (102)
.++++...||.+|.+.+.. +.. + ......+..+|+...... -.+.-+++||+|.+
T Consensus 18 ~~~~~~~~tv~~ll~~l~~--~~p~~~~~~l~~~~g~~~~v~v~vN~~~v~~~~------~~~~~l~~gD~V~i 83 (90)
T 2g1e_A 18 EETFNGISKISELLERLKV--EYGSEFTKQMYDGNNLFKNVIILVNGNNITSMK------GLDTEIKDDDKIDL 83 (90)
T ss_dssp EEEESSCCBHHHHHHHHHH--HSCHHHHHHHCCSSCSTTTCEEEESSSBGGGTC------SSSCBCCTTCEEEE
T ss_pred EEEcCCCCcHHHHHHHHHH--HCcchhhhccccccCcCcceEEEECCEEccccC------CCCcCCCCCCEEEE
Confidence 4677777899999999976 421 0 113456778888774211 12346999999876
No 161
>1ef1_A Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1sgh_A 1j19_A 2emt_A 2ems_A 2d10_A 2d11_A 2yvc_A 2d2q_A 2zpy_A 1gc7_A 1gc6_A 1ni2_A
Probab=77.32 E-value=5.1 Score=28.84 Aligned_cols=72 Identities=10% Similarity=0.114 Sum_probs=48.2
Q ss_pred cEEEEEEcCCCCCceEEEecCCCcHHHHHHHHHhccCCCCCCCc-eEEEe---CCe--ecCCCCCCCCCCccccCCCCCC
Q 034173 9 SVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIEN-LRLVF---RGK--VLDDTQDDDDRDDVYLQLSNGG 82 (102)
Q Consensus 9 ~i~I~vK~~~~~~~~~l~v~~~~TV~~LK~~Ia~~~~~~ip~~~-qrLi~---~Gk--~L~D~~t~~~~~L~~~~I~~g~ 82 (102)
+|.|.|..++| +. .+.+++.+|+.+|=++|++ ..|+.... .-|.+ .|. .|+.++. +.+.+++.+.
T Consensus 1 ~i~~~V~l~d~-~~-~~~v~~~tt~~el~~~v~~--~l~L~e~~~FgL~~~~~~~~~~wLd~~~~-----l~~q~~~~~~ 71 (294)
T 1ef1_A 1 TISVRVTTMDA-EL-EFAIQPNTTGKQLFDQVVK--TIGLREVWFFGLQYQDTKGFSTWLKLNKK-----VTAQDVRKES 71 (294)
T ss_dssp CEEEEEEETTE-EE-EEEECTTCBHHHHHHHHHH--HHTCCCGGGEEEEEEBTTSCEEECCSSSB-----GGGSCBCCCS
T ss_pred CEEEEEEECCc-eE-EEEECCCCcHHHHHHHHHH--HcCCCCcceeEEEEECCCCceeecccccC-----HHhhccCCCC
Confidence 47888899998 55 7999999999999999998 77766433 44443 222 3433334 7776655555
Q ss_pred EEEEEEe
Q 034173 83 NINISLF 89 (102)
Q Consensus 83 ti~l~~~ 89 (102)
...+.++
T Consensus 72 ~~~l~fr 78 (294)
T 1ef1_A 72 PLLFKFR 78 (294)
T ss_dssp SEEEEEE
T ss_pred CEEEEEE
Confidence 4444443
No 162
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=76.74 E-value=1.8 Score=34.70 Aligned_cols=77 Identities=13% Similarity=0.141 Sum_probs=56.9
Q ss_pred CcEEEEEEcCCCC--Cc---eEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEeC------CeecC-CCCCCCCCCccc
Q 034173 8 ESVEITVKTIGPA--PP---SRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFR------GKVLD-DTQDDDDRDDVY 75 (102)
Q Consensus 8 ~~i~I~vK~~~~~--~~---~~l~v~~~~TV~~LK~~Ia~~~~~~ip~~~qrLi~~------Gk~L~-D~~t~~~~~L~~ 75 (102)
..+-||+|.-+.. ++ +.+-|+.+.+|.+|-..|.+ ..|+|++.--..|. ...|+ ...+ +.+
T Consensus 129 ~~iLlFlK~yDp~~q~L~~~G~~~v~~~~kv~~l~~~i~~--~~g~p~dt~l~lyEEi~~~~ie~l~~~~~t-----~~~ 201 (530)
T 2ylm_A 129 HDVMLFLKMYDPKTRSLNYCGHIYTPISCKIRDLLPVMCD--RAGFIQDTSLILYEEVKPNLTERIQDYDVS-----LDK 201 (530)
T ss_dssp TEEEEEEEEEETTTTEEEEEEEEEEETTCBGGGTHHHHHH--HHTCCTTCCEEEEEEEETTEEEECCCSSSB-----HHH
T ss_pred CcEEEEEEeeCCCCCEEEEEEEEEECCCCCHHHHHHHHHH--HcCCCCCCceEEEEecCCCceeEccccccc-----HHH
Confidence 3588999954444 32 23568899999999999988 99999987555453 33444 2334 999
Q ss_pred c--CCCCCCEEEEEEecC
Q 034173 76 L--QLSNGGNINISLFNL 91 (102)
Q Consensus 76 ~--~I~~g~ti~l~~~~~ 91 (102)
. .|.+|+.|.+...+.
T Consensus 202 ~~~eL~~GdII~fQ~~~~ 219 (530)
T 2ylm_A 202 ALDELMDGDIIVFQKDDP 219 (530)
T ss_dssp HSTTCCTTEEEEEEECCG
T ss_pred HHhcccCCCEEEEEecCC
Confidence 9 999999999887654
No 163
>1rws_A Hypothetical protein PF1061; residual dipolar couplings, structural genomics, unknown FUN; NMR {Pyrococcus furiosus} SCOP: d.15.3.2 PDB: 1sf0_A
Probab=75.84 E-value=0.87 Score=27.09 Aligned_cols=47 Identities=19% Similarity=0.332 Sum_probs=33.1
Q ss_pred EEEecCCCcHHHHHHHHHhccCCCCCCCceEEEeCCeecCCCCCCCCCCccccCCCCCCEEEE
Q 034173 24 RLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGGNINI 86 (102)
Q Consensus 24 ~l~v~~~~TV~~LK~~Ia~~~~~~ip~~~qrLi~~Gk~L~D~~t~~~~~L~~~~I~~g~ti~l 86 (102)
.++++...||.+|.+.+ ++++....+..+|+....+ .-|++||.|-+
T Consensus 24 ~~~~~~~~Tv~dLl~~L------~~~~~~v~VavNg~~v~~~----------~~L~dGD~V~i 70 (77)
T 1rws_A 24 EIEWREGMKVRDILRAV------GFNTESAIAKVNGKVVLED----------DEVKDGDFVEV 70 (77)
T ss_dssp CCCCCSSCCHHHHHHTT------TCSSCSSCEEETTEEECSS----------SCCCSSCCCBC
T ss_pred EEECCCCCcHHHHHHHh------CCCCcCEEEEECCEECCCC----------CCcCCCCEEEE
Confidence 35677789999987655 3456666778899988533 35888887654
No 164
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=74.47 E-value=13 Score=30.10 Aligned_cols=74 Identities=8% Similarity=0.108 Sum_probs=50.2
Q ss_pred CCcEEEEEEcCCCCCceEEEecCCCcHHHHHHHHHhccCCCCCCC-ceEEEeCC-----eecCCCCCCCCCCccccCCCC
Q 034173 7 SESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIE-NLRLVFRG-----KVLDDTQDDDDRDDVYLQLSN 80 (102)
Q Consensus 7 ~~~i~I~vK~~~~~~~~~l~v~~~~TV~~LK~~Ia~~~~~~ip~~-~qrLi~~G-----k~L~D~~t~~~~~L~~~~I~~ 80 (102)
+..|.+.|..++| .+ .+.+++.+|+.+|=..|+. ..|+... -.-|.|.. ..|+.+.. +.+.+++.
T Consensus 2 ~k~i~v~V~llDg-t~-e~~vd~~tt~~ell~~V~~--~LgL~e~~~FGL~~~d~~~~~~WLd~~k~-----i~~q~~~~ 72 (575)
T 2i1j_A 2 PKSMNVRVTTMDA-EL-EFAIQQTTTGKQLFDQVVK--TIGLREVWFFGLQYTDSKGDLTWIKLYKK-----VMQQDVKK 72 (575)
T ss_dssp -CEEEEEEECSSC-EE-EEEEETTCBHHHHHHHHHH--HHTCCCGGGEEEEEEBTTSCEEECCTTSB-----GGGSCBCC
T ss_pred CceEEEEEEeCCC-eE-EEEECCCCCHHHHHHHHHH--HcCCCCccceeEEEEecCcchhHhhcccc-----HHHhcccC
Confidence 3568999999998 55 7999999999999999998 7777533 35554422 23433344 77766665
Q ss_pred CCEEEEEEe
Q 034173 81 GGNINISLF 89 (102)
Q Consensus 81 g~ti~l~~~ 89 (102)
+....+.++
T Consensus 73 ~~~~~L~FR 81 (575)
T 2i1j_A 73 ENPLQFKFR 81 (575)
T ss_dssp CSSEEEEEE
T ss_pred CCCeEEEEE
Confidence 555544443
No 165
>3u52_E Phenol hydroxylase component PHO; 4-helix bundle, dioxygen, hydrocarbons, oxidore; HET: MPO EPE; 1.95A {Pseudomonas stutzeri} PDB: 2inn_E* 2inp_E
Probab=74.17 E-value=13 Score=24.50 Aligned_cols=60 Identities=12% Similarity=0.109 Sum_probs=44.9
Q ss_pred EEEecCCCcHHHHHHHHHhccCC-------CCCCCceEEEeCCeecCCCCCCCCCCccccCCCCCCEEEEE
Q 034173 24 RLSVSSPIKVRDLRKLIATSSAN-------HLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGGNINIS 87 (102)
Q Consensus 24 ~l~v~~~~TV~~LK~~Ia~~~~~-------~ip~~~qrLi~~Gk~L~D~~t~~~~~L~~~~I~~g~ti~l~ 87 (102)
++.|+++++..+|-+++-. .-. +|+-++-.+..+|+... .+-+++|.+.||..-+-|.+.
T Consensus 41 ~~p~pP~mpFg~lv~~vl~-~~~~~hPDfa~idws~v~W~l~g~pft---PD~~kSLaenG~~HKs~lrf~ 107 (119)
T 3u52_E 41 ALLVQPGMTFSALVDEILK-PATAAHPDSAKADFLNAEWLLNDEPFT---PKADASLKEQGIDHKSMLTVT 107 (119)
T ss_dssp EEEECTTSBHHHHHHHTHH-HHTTTSTTGGGCCTTSSEEEETTEEEC---CCTTSBTTTTTCCTTEEEEEE
T ss_pred eecCCCCCCHHHHHHHhcc-hhhhcCCccccCCcchheEEECCccCC---CChhhhHHHcCCCchheEEEe
Confidence 7999999999999877643 122 24555556788999994 345678999999988887764
No 166
>2kmc_A Fermitin family homolog 1; kindlin, cytoskeleton, integrin, N-terminal, talin, cell adhesion, cell junction, cell membrane, cell projection; NMR {Mus musculus}
Probab=72.22 E-value=9.3 Score=24.51 Aligned_cols=68 Identities=7% Similarity=0.053 Sum_probs=45.8
Q ss_pred cEEEEEEcCCCC--CceEEEecCCCcHHHHHHHHHhccCCCCC----------CCceEEEeCCeecCCCCCCCCCCcccc
Q 034173 9 SVEITVKTIGPA--PPSRLSVSSPIKVRDLRKLIATSSANHLP----------IENLRLVFRGKVLDDTQDDDDRDDVYL 76 (102)
Q Consensus 9 ~i~I~vK~~~~~--~~~~l~v~~~~TV~~LK~~Ia~~~~~~ip----------~~~qrLi~~Gk~L~D~~t~~~~~L~~~ 76 (102)
.+.|+|...+.. ...+++|..+.-|.-+--+|-+ +..++ |.+++...+ -.-+ |..|
T Consensus 19 eL~V~V~d~~~~~~~~~~lrV~GdlHIGGvmlklVE--ki~i~~dWSDhaLWW~~k~~WLlk-----t~~t-----LDky 86 (102)
T 2kmc_A 19 ELVVRVDHANGEQQTEITLRVSGDLHIGGVMLKLVE--QMNIAQDWSDYALWWEQKRCWLLK-----THWT-----LDKC 86 (102)
T ss_dssp EEEEEEECTTSSCEEEEEEEECSCCBHHHHHHHHHH--HHCCSSCCSSEEEEETTTTEEECC-----TTSB-----HHHH
T ss_pred EEEEEEecCCcccCccEEEEEeeccccchhhhhhhh--hcccccchHHhhhhhhhhchhhhh-----hhhh-----hhhh
Confidence 488888886652 3237888888999999988876 33322 222333222 2344 9999
Q ss_pred CCCCCCEEEEEE
Q 034173 77 QLSNGGNINISL 88 (102)
Q Consensus 77 ~I~~g~ti~l~~ 88 (102)
||+....+++.=
T Consensus 87 giqADa~L~ftp 98 (102)
T 2kmc_A 87 GVQADANLLFTP 98 (102)
T ss_dssp TCCTTSCEEEEE
T ss_pred ceeeeeeeeccC
Confidence 999999988753
No 167
>2kl0_A Putative thiamin biosynthesis THis; structural genomics, PSI-2, protein structure initiative, N structural genomics consortium, NESG; NMR {Rhodopseudomonas palustris} PDB: 2lek_A
Probab=71.40 E-value=3.4 Score=24.42 Aligned_cols=51 Identities=14% Similarity=0.040 Sum_probs=36.9
Q ss_pred EEecCCCcHHHHHHHHHhccCCCCCCCceEEEeCCeecCCCCCCCCCCccccCCCCCCEEEEEE
Q 034173 25 LSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGGNINISL 88 (102)
Q Consensus 25 l~v~~~~TV~~LK~~Ia~~~~~~ip~~~qrLi~~Gk~L~D~~t~~~~~L~~~~I~~g~ti~l~~ 88 (102)
+++ ...||.+|-+. .++++..--...+|.++.-+. ..+.-+++||.|-+.-
T Consensus 10 ~e~-~~~Tl~~LL~~------l~~~~~~vAV~vNg~iVpr~~------~~~~~L~dGD~veIv~ 60 (73)
T 2kl0_A 10 REV-QSASVAALMTE------LDCTGGHFAVALNYDVVPRGK------WDETPVTAGDEIEILT 60 (73)
T ss_dssp ECC-CCSBHHHHHHH------TTCCSSSCEEEESSSEECHHH------HTTCBCCTTCEEEEEC
T ss_pred EEc-CCCcHHHHHHH------cCCCCCcEEEEECCEECChHH------cCcccCCCCCEEEEEc
Confidence 466 67899998544 456778788889999985321 3456799999997643
No 168
>3qij_A Protein 4.1; cytoskeleton, structural genomics, structural genomics conso SGC; 1.80A {Homo sapiens} PDB: 1gg3_A 3bin_A 2he7_A 2rq1_A
Probab=69.68 E-value=13 Score=26.99 Aligned_cols=73 Identities=16% Similarity=0.050 Sum_probs=48.1
Q ss_pred CcEEEEEEcCCCCCceEEEecCCCcHHHHHHHHHhccCCCCCCCc-eEEEeC---C--eecCCCCCCCCCCccccCCCCC
Q 034173 8 ESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIEN-LRLVFR---G--KVLDDTQDDDDRDDVYLQLSNG 81 (102)
Q Consensus 8 ~~i~I~vK~~~~~~~~~l~v~~~~TV~~LK~~Ia~~~~~~ip~~~-qrLi~~---G--k~L~D~~t~~~~~L~~~~I~~g 81 (102)
..+.+.|..++|... .+.|++.+|+.+|=++|++ ..|+.... .-|.|. | ..|+.++. +.+......
T Consensus 16 ~~~~~~V~lldgt~~-~~~vd~~tt~~el~~~v~~--~l~L~e~~~FgL~~~~~~~~~~wLd~~k~-----i~~q~~~~~ 87 (296)
T 3qij_A 16 FQGHCKVSLLDDTVY-ECVVEKHAKGQDLLKRVCE--HLNLLEEDYFGLAIWDNATSKTWLDSAKE-----IKKQVRGVP 87 (296)
T ss_dssp -CCEEEEECTTSCEE-EEECCTTCBHHHHHHHHHH--HHTCSSGGGEEEEEEEETTEEEECCTTSB-----HHHHC---C
T ss_pred ceEEEEEEccCCCEE-EEEECCCCCHHHHHHHHHH--HcCCCCcceeEEEEEcCCCccchhccchh-----HHHhcCCCC
Confidence 469999999999887 8999999999999999998 87766433 455442 2 33443333 665543333
Q ss_pred CEEEEEE
Q 034173 82 GNINISL 88 (102)
Q Consensus 82 ~ti~l~~ 88 (102)
-++++.+
T Consensus 88 ~~l~frv 94 (296)
T 3qij_A 88 WNFTFNV 94 (296)
T ss_dssp CEEEEEE
T ss_pred cEEEEEE
Confidence 3455443
No 169
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B
Probab=67.61 E-value=3 Score=26.62 Aligned_cols=39 Identities=15% Similarity=0.006 Sum_probs=28.6
Q ss_pred CcEEEEEEcCC-------CCCceEEEecCCCcHHHHHHHHHhccCCCCC
Q 034173 8 ESVEITVKTIG-------PAPPSRLSVSSPIKVRDLRKLIATSSANHLP 49 (102)
Q Consensus 8 ~~i~I~vK~~~-------~~~~~~l~v~~~~TV~~LK~~Ia~~~~~~ip 49 (102)
.+|+|+|...+ +..+ .+-|+++.+..+|..+|.+ +.+++
T Consensus 4 ~sikVKv~y~~~~~~~~~~d~~-~i~V~~~i~f~~L~~kI~~--Kl~~~ 49 (98)
T 1q1o_A 4 GSILFRISYNNNSNNTSSSEIF-TLLVEKVWNFDDLIMAINS--KISNT 49 (98)
T ss_dssp SCEEEEEEECSSCSSCCCCEEE-EEEECTTCCHHHHHHHHHH--HHHHH
T ss_pred ccEEEEEEecCcccccccCcEE-EEEecCCCCHHHHHHHHHH--HHcCC
Confidence 34777777543 2234 7899999999999999988 66543
No 170
>3ge3_C Toluene-4-monooxygenase system protein B; DIIRON hydroxylase, effector protein, T201A, aromatic hydrocarbons catabolism, FAD, flavoprotein; 1.52A {Pseudomonas mendocina} SCOP: d.15.12.0 PDB: 3dhh_C* 3dhg_C* 3dhi_C 3ge8_C 3i5j_C 3i63_C 3q14_C 3q2a_C* 3q3m_C* 3q3n_C* 3q3o_C* 3rmk_C* 3ri7_C*
Probab=66.43 E-value=20 Score=22.14 Aligned_cols=73 Identities=7% Similarity=-0.063 Sum_probs=55.0
Q ss_pred EEEEEEcCCCCCceEEEecCCCcHHHHHHHHHhccCCC----CCCCceEEEeCCee--cCCCCCCCCCCccccCCCCCCE
Q 034173 10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANH----LPIENLRLVFRGKV--LDDTQDDDDRDDVYLQLSNGGN 83 (102)
Q Consensus 10 i~I~vK~~~~~~~~~l~v~~~~TV~~LK~~Ia~~~~~~----ip~~~qrLi~~Gk~--L~D~~t~~~~~L~~~~I~~g~t 83 (102)
+-|..+..++-...-+.|+.+.|+.++-++++... -| .-|.-.|..++|+. +..+.+ +.+.||++-+.
T Consensus 4 ~Pl~~~F~gDFv~~Lv~VDt~dtmdqVA~k~A~h~-VGrrv~p~pg~lrVr~~G~~~~~Pr~mt-----VaeaGl~Pme~ 77 (84)
T 3ge3_C 4 FPVHAAFEKDFLVQLVVVDLNDSMDQVAEKVAYHC-VNRRVAPREGVMRVRKHRSTELFPRDMT-----IAESGLNPTEV 77 (84)
T ss_dssp EEEEEEETTCSBEEEEEEETTCBHHHHHHHHHHTT-BTTTBCCCSSCEEEEETTCSCBCCTTCB-----HHHHCCCTTCE
T ss_pred cceEEEeccccEEEEEEecCCCcHHHHHHHHhhhh-cceeeCCCCCcEEEEECCCcccCCCCCE-----eeccCCCcceE
Confidence 44555665555555689999999999999998622 12 22346888999998 888888 99999999999
Q ss_pred EEEEE
Q 034173 84 INISL 88 (102)
Q Consensus 84 i~l~~ 88 (102)
|.+..
T Consensus 78 vev~~ 82 (84)
T 3ge3_C 78 IDVVF 82 (84)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 87754
No 171
>1wgy_A RAP guanine nucleotide exchange factor 5; ubiquitin fold, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=65.79 E-value=23 Score=22.59 Aligned_cols=75 Identities=17% Similarity=0.171 Sum_probs=49.0
Q ss_pred cEEEEEEcCCCCCceEEEecCCCcHHHHHHHHHhccCCCCCCCceEEE---eCCeec--CCCCCCCCCCccccCCCCCCE
Q 034173 9 SVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLV---FRGKVL--DDTQDDDDRDDVYLQLSNGGN 83 (102)
Q Consensus 9 ~i~I~vK~~~~~~~~~l~v~~~~TV~~LK~~Ia~~~~~~ip~~~qrLi---~~Gk~L--~D~~t~~~~~L~~~~I~~g~t 83 (102)
.+-..|=..+.+.. ++.++...|+.+++..+++ +.++..+.+.|+ ++|..+ ++++. --.-.+.-..-
T Consensus 9 ~i~~~Vy~~Dhsy~-tvr~~v~~sa~eIl~~va~--kl~~~~e~l~Lv~v~ssGEk~~lqp~d~-----si~tsL~~NgR 80 (104)
T 1wgy_A 9 EIFCHVYITEHSYV-SVKAKVSSIAQEILKVVAE--KIQYAEEDLALVAITFSGEKHELQPNDL-----VISKSLEASGR 80 (104)
T ss_dssp CCCEEEECSSSCEE-EECCCTTCBSHHHHHHHHH--HHTSCGGGEEEEEECSSCCCCBCCTTSB-----SSCCSSCSSCE
T ss_pred ceEEEEEeccCceE-EEEEeccchHHHHHHHHHH--HhcCCccceEEEEEccCCcEeecCCcce-----EEEeeccccce
Confidence 33344445555555 7888999999999999999 888877788886 566544 33222 22224455567
Q ss_pred EEEEEecC
Q 034173 84 INISLFNL 91 (102)
Q Consensus 84 i~l~~~~~ 91 (102)
|++..+..
T Consensus 81 Lfvc~kd~ 88 (104)
T 1wgy_A 81 IYVYRKDL 88 (104)
T ss_dssp EEEEECCS
T ss_pred EEEeehHh
Confidence 88766543
No 172
>2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137, structural genomics, PSI-2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 3cwi_A
Probab=64.72 E-value=5.7 Score=23.75 Aligned_cols=52 Identities=15% Similarity=0.282 Sum_probs=37.4
Q ss_pred EEEec--CCCcHHHHHHHHHhccCCCCC-CCceEEEeCCeecCCCCCCCCCCccccCCCCCCEEEEE
Q 034173 24 RLSVS--SPIKVRDLRKLIATSSANHLP-IENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGGNINIS 87 (102)
Q Consensus 24 ~l~v~--~~~TV~~LK~~Ia~~~~~~ip-~~~qrLi~~Gk~L~D~~t~~~~~L~~~~I~~g~ti~l~ 87 (102)
.++++ ...||.+|-+.+ +++ +..--...+|.++.-+. ..+.-|++||.|-+.
T Consensus 9 ~~e~~~~~~~Tl~~LL~~l------~~~~~~~vAVavNg~iVpr~~------~~~~~L~dGD~IEIv 63 (78)
T 2k5p_A 9 PSTVDGAESLNVTELLSAL------KVAQAEYVTVELNGEVLEREA------FDATTVKDGDAVEFL 63 (78)
T ss_dssp EEECSSCSCEEHHHHHHHH------TCSCTTTCCEEETTEECCTTH------HHHCEECSSBCEEEC
T ss_pred EEEcCCCCCCcHHHHHHHc------CCCCCCcEEEEECCEECChHH------cCcccCCCCCEEEEE
Confidence 35677 778999997665 355 66666789999995332 445679999998764
No 173
>2v1y_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit alpha isoform; cancer, SH2 domain, SH3 domain, transferase, oncogen mutations, HOST-virus interaction; 2.4A {Bos taurus}
Probab=61.16 E-value=16 Score=23.46 Aligned_cols=35 Identities=3% Similarity=-0.050 Sum_probs=27.9
Q ss_pred CCcEEEEEEcCCCCCceEEEecCCCcHHHHHHHHHh
Q 034173 7 SESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIAT 42 (102)
Q Consensus 7 ~~~i~I~vK~~~~~~~~~l~v~~~~TV~~LK~~Ia~ 42 (102)
+..+.|.+=.++|-.+ .++++.++|+.++|+.+=+
T Consensus 17 ~~~v~v~~LlPnGi~i-~l~~~~~~tl~eiK~~lw~ 51 (108)
T 2v1y_A 17 PPRILVECLLPNGMIV-TLECLREATLITIKHELFK 51 (108)
T ss_dssp CSEEEEEEECTTSCEE-EEEEETTCBHHHHHHHHHH
T ss_pred CCcEEEEEEcCcEEEE-EEEeeccccHHHHHHHHHH
Confidence 3557777778888655 8999999999999987765
No 174
>2l05_A Serine/threonine-protein kinase B-RAF; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}
Probab=60.40 E-value=29 Score=21.89 Aligned_cols=75 Identities=17% Similarity=0.108 Sum_probs=49.6
Q ss_pred CCCCCCcEEEEEEcCCCCCceEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEe---CC-eecCCCCCCCCCCccccCC
Q 034173 3 MGEISESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVF---RG-KVLDDTQDDDDRDDVYLQL 78 (102)
Q Consensus 3 ~~~~~~~i~I~vK~~~~~~~~~l~v~~~~TV~~LK~~Ia~~~~~~ip~~~qrLi~---~G-k~L~D~~t~~~~~L~~~~I 78 (102)
|+..+....|.+=-++++.. .++|.++.|+.+-=.++-+ ..++.++.= -+| .| +..-|+.+ +++ .
T Consensus 11 ~~~~~~~~~irvhLPNqQrT-~V~VrpG~tlrdAL~KaLk--~R~L~pe~C-~Vy~~~~~~~~~IdWdt----Di~---~ 79 (95)
T 2l05_A 11 MPKSPQKPIVRVFLPNKQRT-VVPARCGVTVRDSLKKALM--MRGLIPECC-AVYRIQDGEKKPIGWDT----DIS---W 79 (95)
T ss_dssp CCCCCCSCEEEEEETTTEEE-EEECCTTCBHHHHHHHHHH--HHTCCGGGE-EEEEEETTEEEEECTTS----BGG---G
T ss_pred CCCCCCccEEEEECCCCCeE-EEEecCCcCHHHHHHHHHH--HcCCCHHHc-EEEEcCCCCccccchhH----hhh---h
Confidence 55555545566667788776 8999999999998888877 888887753 334 34 34445555 233 3
Q ss_pred CCCCEEEEEE
Q 034173 79 SNGGNINISL 88 (102)
Q Consensus 79 ~~g~ti~l~~ 88 (102)
-.|..|.|-+
T Consensus 80 L~~eEL~Ve~ 89 (95)
T 2l05_A 80 LTGEELHVEV 89 (95)
T ss_dssp GTTCEEEEEE
T ss_pred ccCcEEEEEE
Confidence 4467777654
No 175
>3hk0_A Growth factor receptor-bound protein 10; GRB10, RA, PH, RAS-associating, pleckstrin-homology, adapter phosphoprotein, SH2 domain; 2.60A {Homo sapiens}
Probab=59.20 E-value=19 Score=26.24 Aligned_cols=60 Identities=17% Similarity=0.236 Sum_probs=33.8
Q ss_pred CCCCCCcEEEEEEcCCCCCceEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEeC-------CeecCCCCC
Q 034173 3 MGEISESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFR-------GKVLDDTQD 67 (102)
Q Consensus 3 ~~~~~~~i~I~vK~~~~~~~~~l~v~~~~TV~~LK~~Ia~~~~~~ip~~~qrLi~~-------Gk~L~D~~t 67 (102)
|+....-++|+. -+|... .+.|++++|+.||=+.+++ +.+++.+.-..++- -|.|.|.+.
T Consensus 4 ~~~~~~ivkv~~--~d~ss~-~l~V~~~mta~ev~~~l~~--k~~~~~~~~W~l~E~~~~l~lER~ledhE~ 70 (256)
T 3hk0_A 4 MAAAKQDVKVFS--EDGTSK-VVEILADMTARDLCQLLVY--KSHSVDDNSWTLVEHHPHLGLERCLEDHEL 70 (256)
T ss_dssp ----CEEEEEEE--TTSCEE-EEEECTTCBHHHHHHHHHC--CC-------EEEEEEETTTTEEEECCTTSB
T ss_pred CCCCceEEEEEe--cCCcEE-EEEECCCCCHHHHHHHHHH--hcCCCCCCCEEEEEECCCcccccccccchh
Confidence 444444566654 455555 8999999999999999987 77765443333331 466666554
No 176
>2bt6_A Adrenodoxin 1; ruthenium(II) bipyridyl complex, intramolecular electron TRA electron transport, metal-binding; HET: RUA; 1.50A {Bos taurus} SCOP: d.15.4.1 PDB: 1ayf_A 3n9y_C* 2jqr_B* 3na0_C*
Probab=59.02 E-value=12 Score=23.04 Aligned_cols=29 Identities=3% Similarity=-0.046 Sum_probs=23.2
Q ss_pred CCcEEEEEEcCCCCCceEEEecCCCcHHHH
Q 034173 7 SESVEITVKTIGPAPPSRLSVSSPIKVRDL 36 (102)
Q Consensus 7 ~~~i~I~vK~~~~~~~~~l~v~~~~TV~~L 36 (102)
..+++|++..++|... .++++++.|+.+.
T Consensus 4 ~~m~~V~~~~~~g~~~-~v~~~~g~tLL~a 32 (108)
T 2bt6_A 4 GDKITVHFINRDGETL-TTKGKIGDSLLDV 32 (108)
T ss_dssp -CEEEEEEECTTSCEE-EEEEETTCBHHHH
T ss_pred CceEEEEEECCCCCEE-EEEECCCChHHHH
Confidence 4568899988888765 7899999999874
No 177
>2dhz_A RAP guanine nucleotide exchange factor (GEF)- like 1; LINK guanine nucleotide exchange factor II, LINK-gefii, RA domain, structural genomics; NMR {Homo sapiens}
Probab=56.32 E-value=39 Score=22.11 Aligned_cols=52 Identities=15% Similarity=0.114 Sum_probs=37.2
Q ss_pred CcEEEEEEcCCCCCceEEEecCCCcHHHHHHHHHhccCCCCCCC------ceEEE---eCCeec
Q 034173 8 ESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIE------NLRLV---FRGKVL 62 (102)
Q Consensus 8 ~~i~I~vK~~~~~~~~~l~v~~~~TV~~LK~~Ia~~~~~~ip~~------~qrLi---~~Gk~L 62 (102)
+.+-..|=..+.+.. ++.++...|+.+++..+++ +.++..+ .+.|+ ++|-.+
T Consensus 8 Dei~~~VY~~Dhsy~-tvr~~v~~sa~eIl~~va~--kl~~~e~~~~~~~~l~Lv~V~ssGEk~ 68 (120)
T 2dhz_A 8 DEIFCRVYMPDHSYV-TIRSRLSASVQDILGSVTE--KLQYSEEPAGREDSLILVAVSSSGEKV 68 (120)
T ss_dssp CCEEECEECTTSCCC-CEEECTTCCHHHHHHHHHH--HSTTCSSTTSCCSCCEEEEEETTCCCE
T ss_pred CcEEEEEEeccCceE-EEEEeccccHHHHHHHHHH--HhccccccccccCceEEEEEccCCcEe
Confidence 344444556666666 8999999999999999998 7776544 67775 455443
No 178
>4a6q_A Histone deacetylase complex subunit SAP18; transcription, splicing, RNA metabolism, ubiquitin-like; HET: MSE; 1.50A {Mus musculus} PDB: 4a90_A* 2hde_A 4a8x_C
Probab=53.79 E-value=11 Score=25.61 Aligned_cols=62 Identities=16% Similarity=0.216 Sum_probs=39.9
Q ss_pred ecCCCcHHHHHHHHHhccCCCCCCC---ceEEEe-----------------CCeecCCCCCCCCCCccccCCCCCCEEEE
Q 034173 27 VSSPIKVRDLRKLIATSSANHLPIE---NLRLVF-----------------RGKVLDDTQDDDDRDDVYLQLSNGGNINI 86 (102)
Q Consensus 27 v~~~~TV~~LK~~Ia~~~~~~ip~~---~qrLi~-----------------~Gk~L~D~~t~~~~~L~~~~I~~g~ti~l 86 (102)
.=.++|+.||=.+|.++....-... ..+++| .|+.-. +|+++|.+.+..-||.|.+
T Consensus 60 TW~daTLrEL~~Lvk~~~p~ar~~gtrl~F~~VypD~r~~ry~~kdlGsv~~g~~~~----dd~kTL~~~rF~iGDyidv 135 (143)
T 4a6q_A 60 TWMDATLKELTSLVKEVYPEARKKGTHFNFAIVFMDLKRPGYRVKEIGSTMSGRKGT----DDSMTLQSQKFQIGDYLDI 135 (143)
T ss_dssp ECTTCBHHHHHHHHHHHCGGGGSTTCEEEEEEEEECSSSSSEEEEEEEEEETTBCCT----TTTCBTGGGTCCTTCEEEE
T ss_pred eCCCCCHHHHHHHHHHhCccccCCCCEEEEEEEcccCCCCceeeccCCEEecCCCCC----cccccHHHCCCcCCCEEEE
Confidence 3467999999999887331100000 033333 333332 4556699999999999999
Q ss_pred EEecCC
Q 034173 87 SLFNLD 92 (102)
Q Consensus 87 ~~~~~~ 92 (102)
++.+|+
T Consensus 136 aI~pP~ 141 (143)
T 4a6q_A 136 AITPPN 141 (143)
T ss_dssp EEECGG
T ss_pred EEeCCC
Confidence 998764
No 179
>2nvu_B Maltose binding protein/NEDD8-activating enzyme E1 catalytic subunit chimera; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: c.111.1.2 c.94.1.1
Probab=52.51 E-value=40 Score=27.75 Aligned_cols=60 Identities=10% Similarity=0.226 Sum_probs=38.6
Q ss_pred EEEecCCCcHHHHHHHHHhccCCC--CCCCc--------eEEEeCCe--ecC---CCCCCCCCCccccCCCCCCEEEEE
Q 034173 24 RLSVSSPIKVRDLRKLIATSSANH--LPIEN--------LRLVFRGK--VLD---DTQDDDDRDDVYLQLSNGGNINIS 87 (102)
Q Consensus 24 ~l~v~~~~TV~~LK~~Ia~~~~~~--ip~~~--------qrLi~~Gk--~L~---D~~t~~~~~L~~~~I~~g~ti~l~ 87 (102)
.+.++.+.|+.+|-+.+.. +.. +.... .+++|... .|+ ++.+ +++|.++|+.+|+.|+|.
T Consensus 715 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ly~~~~~~~~~~~~~~l--~~~l~~l~~~~~~~~~~~ 789 (805)
T 2nvu_B 715 NIQFSPSAKLQEVLDYLTN--SASLQMKSPAITATLEGKNRTLYLQSVTSIEERTRPNL--SKTLKELGLVDGQELAVA 789 (805)
T ss_dssp EEEECTTSBHHHHHHHHHH--CTTTCCSSCEEEEEETTEEEEEECCSSHHHHHHHGGGG--GSBTTTTTCCTTCEEEEE
T ss_pred EEEECCcChHHHHHHHHHh--hhccCcccceEEEEccCCCcEEEecCccchhhhhHhhh--cCCHHHcCCCCCCEEEEE
Confidence 5788888999999888887 433 32211 35666432 110 0111 355999999999999885
No 180
>3hui_A Ferredoxin; cytochrome P450, electron transfer, iron, iron-sulfur, metal-binding, electron transport; 2.01A {Rhodopseudomonas palustris}
Probab=51.58 E-value=23 Score=22.87 Aligned_cols=31 Identities=13% Similarity=0.025 Sum_probs=25.1
Q ss_pred CCCCcEEEEEEcCCCCCceEEEecCCCcHHHH
Q 034173 5 EISESVEITVKTIGPAPPSRLSVSSPIKVRDL 36 (102)
Q Consensus 5 ~~~~~i~I~vK~~~~~~~~~l~v~~~~TV~~L 36 (102)
....+++|++..++|... .++++++.|+.+.
T Consensus 17 ~~~~M~~Vt~~~~~G~~~-~v~~~~G~tLL~a 47 (126)
T 3hui_A 17 RGSHMAKINFVDHTGETR-TVEVEEGATVMEA 47 (126)
T ss_dssp TTCSEEEEEEECTTSCEE-EEEEETTSBHHHH
T ss_pred CCCCceEEEEEeCCCCEE-EEEECCCCcHHHH
Confidence 334678999998888766 8999999999884
No 181
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=51.53 E-value=31 Score=20.70 Aligned_cols=45 Identities=20% Similarity=0.301 Sum_probs=32.4
Q ss_pred CCCCCCCCcEEEEEEcCCCCCceEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEe
Q 034173 1 MGMGEISESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVF 57 (102)
Q Consensus 1 ~~~~~~~~~i~I~vK~~~~~~~~~l~v~~~~TV~~LK~~Ia~~~~~~ip~~~qrLi~ 57 (102)
||.......=+|+|+.+. ++.|-.+|++..+. -..+++...+++.
T Consensus 1 mg~~~~~~m~tlfV~nL~----------~~~tee~L~~~F~~--~G~i~v~~v~i~~ 45 (95)
T 2lkz_A 1 MGHHHHHHMDTIILRNIA----------PHTVVDSIMTALSP--YASLAVNNIRLIK 45 (95)
T ss_dssp CCCCSSCCCCEEEEESCC----------TTCCHHHHHHHSTT--TCCCCGGGEECCC
T ss_pred CCcccCCccCEEEEeCCC----------CcCCHHHHHHHHHh--hCCccEEEEEEEe
Confidence 777777777788887754 45689999999875 4445666666653
No 182
>2y5c_A Adrenodoxin-like protein, mitochondrial; electron transport, iron-sulfur cluster biogenesis; 1.70A {Homo sapiens}
Probab=51.08 E-value=21 Score=21.98 Aligned_cols=28 Identities=14% Similarity=0.000 Sum_probs=22.6
Q ss_pred CcEEEEEEcCCCCCceEEEecCCCcHHHH
Q 034173 8 ESVEITVKTIGPAPPSRLSVSSPIKVRDL 36 (102)
Q Consensus 8 ~~i~I~vK~~~~~~~~~l~v~~~~TV~~L 36 (102)
++++|++..++|... .++++++.|+.+.
T Consensus 4 ~m~~v~~~~~~g~~~-~~~~~~g~tlL~a 31 (109)
T 2y5c_A 4 DVVNVVFVDRSGQRI-PVSGRVGDNVLHL 31 (109)
T ss_dssp CEEEEEEECTTSCEE-EEEEETTCBHHHH
T ss_pred CcEEEEEEcCCCCEE-EEEECCCCcHHHH
Confidence 357888887888765 7899999999884
No 183
>1v8c_A MOAD related protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, protein binding; 1.60A {Thermus thermophilus} SCOP: d.15.3.1 d.129.5.1
Probab=50.65 E-value=37 Score=22.98 Aligned_cols=64 Identities=17% Similarity=0.287 Sum_probs=39.7
Q ss_pred EEEecCCCcHHHHHHHHHhccCCC-CC---------CCceEEEeCCeecCCCCCCCCCCccccCCCCCCEEEEEEecCCC
Q 034173 24 RLSVSSPIKVRDLRKLIATSSANH-LP---------IENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGGNINISLFNLDD 93 (102)
Q Consensus 24 ~l~v~~~~TV~~LK~~Ia~~~~~~-ip---------~~~qrLi~~Gk~L~D~~t~~~~~L~~~~I~~g~ti~l~~~~~~~ 93 (102)
.++++. .||.+|.+.+.. ... +. .....+..+|+...... -.+.-|++||+|.+ +-....
T Consensus 17 ~~ev~~-~TV~dLl~~L~~--~~p~l~~~l~~~~~l~~~v~VaVNg~~v~~~~------~~dt~L~dGDeVai-~PpVsG 86 (168)
T 1v8c_A 17 QLELPG-ATVGEVLENLVR--AYPALKEELFEGEGLAERVSVFLEGRDVRYLQ------GLSTPLSPGATLDL-FPPVAG 86 (168)
T ss_dssp EEECCC-SBHHHHHHHHHH--HCGGGHHHHEETTEECTTCEEEETTEEGGGTT------GGGCBCCTTCEEEE-ECSCCS
T ss_pred eEEECC-CcHHHHHHHHHh--hChhhhhhhhcccccCCcEEEEECCEECCCcC------CCccCCCCCCEEEE-ECcccc
Confidence 466765 899999999976 321 10 13345667888875321 12456999999876 333345
Q ss_pred ceee
Q 034173 94 LSFQ 97 (102)
Q Consensus 94 ~~~~ 97 (102)
-||.
T Consensus 87 G~~~ 90 (168)
T 1v8c_A 87 GGFE 90 (168)
T ss_dssp EEEE
T ss_pred ccch
Confidence 5664
No 184
>2eel_A Cell death activator CIDE-A; CIDE-N domain, cell death- inducing DFFA-like effector A, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=50.19 E-value=26 Score=21.85 Aligned_cols=51 Identities=16% Similarity=0.045 Sum_probs=34.7
Q ss_pred CcHHHHHHHHHhccCCCCCCCceEEEe--CCeecCCCCCCCCCCccccCCCCCCEEEEEEecC
Q 034173 31 IKVRDLRKLIATSSANHLPIENLRLVF--RGKVLDDTQDDDDRDDVYLQLSNGGNINISLFNL 91 (102)
Q Consensus 31 ~TV~~LK~~Ia~~~~~~ip~~~qrLi~--~Gk~L~D~~t~~~~~L~~~~I~~g~ti~l~~~~~ 91 (102)
.+..+|+++..+ +.+++...-+|.. .|..++|++- +. --+.+|+.+.+...
T Consensus 28 ~sL~EL~~K~~~--~l~l~~~~~~lvLeeDGT~VddEey-----F~---tLp~nT~lmvL~~g 80 (91)
T 2eel_A 28 SSLQELISKTLD--ALVIATGLVTLVLEEDGTVVDTEEF-----FQ---TLGDNTHFMILEKG 80 (91)
T ss_dssp SSHHHHHHHHHH--HTTCSSSCEEEEETTTCCBCCCHHH-----HT---TSCSSEEEEEEETT
T ss_pred CCHHHHHHHHHH--HhcCCCCCcEEEEeeCCcEEechhh-----hh---hCCCCCEEEEEcCC
Confidence 389999999988 8888755555543 6888865443 33 33467887777653
No 185
>3au4_A Myosin-X; protein-protein complex, motor protein cargo transportation, protein-apoptosis complex; 1.90A {Homo sapiens} PDB: 3au5_A 3pzd_A
Probab=50.01 E-value=22 Score=28.06 Aligned_cols=47 Identities=11% Similarity=0.109 Sum_probs=38.9
Q ss_pred CcEEEEEEcCCCCCceEEEecCCCcHHHHHHHHHhccCCCCCC--CceEEEe
Q 034173 8 ESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPI--ENLRLVF 57 (102)
Q Consensus 8 ~~i~I~vK~~~~~~~~~l~v~~~~TV~~LK~~Ia~~~~~~ip~--~~qrLi~ 57 (102)
..+.+.|..++|... .+.+++.+|+.+|-+.|++ ..|+.. +-.-|.+
T Consensus 215 ~~~~~~V~l~dg~~~-~~~v~~~tt~~el~~~v~~--~lgL~e~~~~FgL~~ 263 (555)
T 3au4_A 215 QEMTSTVYCHGGGSC-KITINSHTTAGEVVEKLIR--GLAMEDSRNMFALFE 263 (555)
T ss_dssp CCEEEEEEETTSCEE-EEEECTTCBHHHHHHHHHH--HTTCTTCCSEEEEEE
T ss_pred CCcceEEEecCCCeE-EEEeCCCCcHHHHHHHHHH--HcCCCCCCCceEEEE
Confidence 358889999999877 8999999999999999998 888864 4455544
No 186
>1pqs_A Cell division control protein 24; alpha and beta protein, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1tz1_A
Probab=46.73 E-value=9.8 Score=22.95 Aligned_cols=34 Identities=15% Similarity=0.091 Sum_probs=25.4
Q ss_pred EEEecCCCcHHHHHHHHHhccCCCCC-----CCceEEEeCC
Q 034173 24 RLSVSSPIKVRDLRKLIATSSANHLP-----IENLRLVFRG 59 (102)
Q Consensus 24 ~l~v~~~~TV~~LK~~Ia~~~~~~ip-----~~~qrLi~~G 59 (102)
.+-|+++.+..+|..+|.+ +.+.. ....+|-|+.
T Consensus 5 ~i~V~~~i~f~~L~~kI~~--kl~~~~~~~~~~~~~lkYkD 43 (77)
T 1pqs_A 5 TLLVEKVWNFDDLIMAINS--KISNTHNNNISPITKIKYQD 43 (77)
T ss_dssp EEECTTCCCSHHHHHHHHH--HTTTTTSSCSCSTTCCEEEE
T ss_pred EEEeCCCCCHHHHHHHHHH--HHcccccccccceeEEEEEc
Confidence 6889999999999999988 77653 2445555543
No 187
>1j0g_A Hypothetical protein 1810045K17; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.6 PDB: 1wxs_A 1l7y_A
Probab=46.28 E-value=50 Score=20.42 Aligned_cols=74 Identities=19% Similarity=0.214 Sum_probs=49.8
Q ss_pred EEEEEEcCCCCCceEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEe-CCeecCCCCCCCCCCccccCCCCCCEEEEEE
Q 034173 10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVF-RGKVLDDTQDDDDRDDVYLQLSNGGNINISL 88 (102)
Q Consensus 10 i~I~vK~~~~~~~~~l~v~~~~TV~~LK~~Ia~~~~~~ip~~~qrLi~-~Gk~L~D~~t~~~~~L~~~~I~~g~ti~l~~ 88 (102)
.+|++-+-....+..++|+..+-...+-+-.++ +.++|+..--+|. .|--+....+ -...-++.|+.+.|.-
T Consensus 13 FkItltSdpklpfkvlsVPE~~PftAVlkfaaE--eF~vp~~TsAiiT~dGiGInP~Qt-----AGnvFlKhGseLrlIP 85 (92)
T 1j0g_A 13 FKITLTSDPRLPYKVLSVPESTPFTAVLKFAAE--EFKVPAATSAIITNDGIGINPAQT-----AGNVFLKHGSELRIIP 85 (92)
T ss_dssp EEEEETTSTTCCEEEEEEETTSBHHHHHHHHHH--HTTCCSSSEEEECTTSCCCCCSSB-----HHHHHHHTCSEEEEEE
T ss_pred EEEEEccCCCCCceEEecCccCchHHHHHHHHH--HcCCCccceEEEecCCcccChhhc-----cchhhhhcCceeEecc
Confidence 344333323333456899999888888777877 8999998877664 4544544445 6666688999988865
Q ss_pred ec
Q 034173 89 FN 90 (102)
Q Consensus 89 ~~ 90 (102)
|.
T Consensus 86 RD 87 (92)
T 1j0g_A 86 RD 87 (92)
T ss_dssp CC
T ss_pred cc
Confidence 54
No 188
>2lgx_A Fermitin family homolog 2; kindlin, membrane, integrin activation, cell adhesion; NMR {Homo sapiens}
Probab=44.87 E-value=9.5 Score=24.85 Aligned_cols=65 Identities=5% Similarity=0.099 Sum_probs=43.6
Q ss_pred cEEEEEEcCCCCCceEEEecCCCcHHHHHHHHHhccCCCCC----------CCceEEEeCCeecCCCCCCCCCCccccCC
Q 034173 9 SVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLP----------IENLRLVFRGKVLDDTQDDDDRDDVYLQL 78 (102)
Q Consensus 9 ~i~I~vK~~~~~~~~~l~v~~~~TV~~LK~~Ia~~~~~~ip----------~~~qrLi~~Gk~L~D~~t~~~~~L~~~~I 78 (102)
.++|+|...+ ... +++|..+.-|.-+--+|-+ +..++ |.+++...+- .-| |..|||
T Consensus 26 eL~V~V~d~~-~~~-~lrV~GdlHIGGvmLkLVE--~i~i~~dWSDhaLWWp~k~~WLlkt-----~~t-----LDk~gi 91 (112)
T 2lgx_A 26 ELSVHVTDVN-RDV-TLRVTGEVHIGGVMLKLVE--KLDVKKDWSDHALWWEKKRTWLLKT-----HWT-----LDKYGI 91 (112)
T ss_dssp CEECCBTTTT-BCC-EECCCTTSCHHHHHHHHHH--HCCSCCCSSSSBEEETTTTEEECCT-----TSC-----HHHHTC
T ss_pred EEEEEEecCC-ccE-EEEEeeccccccchhhhhh--hhcccccchHhhhhhhhhchhhhcc-----hhh-----Hhhhce
Confidence 4677776666 344 7899988999999988876 44322 2233333332 234 999999
Q ss_pred CCCCEEEEE
Q 034173 79 SNGGNINIS 87 (102)
Q Consensus 79 ~~g~ti~l~ 87 (102)
+....+++.
T Consensus 92 qADa~L~ft 100 (112)
T 2lgx_A 92 QADAKLQFT 100 (112)
T ss_dssp CTTCBBCBB
T ss_pred eccccceec
Confidence 999887754
No 189
>1f2r_I Inhibitor of caspase-activated DNAse; alpha-beta roll, protein-protein complex, DNA binding protein; NMR {Mus musculus} SCOP: d.15.2.1
Probab=43.89 E-value=35 Score=21.65 Aligned_cols=50 Identities=16% Similarity=0.137 Sum_probs=33.9
Q ss_pred CcHHHHHHHHHhccCCCCCCC----ceEEEeCCeecCCCCCCCCCCccccCCCCCCEEEEEEec
Q 034173 31 IKVRDLRKLIATSSANHLPIE----NLRLVFRGKVLDDTQDDDDRDDVYLQLSNGGNINISLFN 90 (102)
Q Consensus 31 ~TV~~LK~~Ia~~~~~~ip~~----~qrLi~~Gk~L~D~~t~~~~~L~~~~I~~g~ti~l~~~~ 90 (102)
.+..+|+.+..+ +.+++.. ...|.-.|..++|++- +.. -+.+|+.+.+..
T Consensus 37 ~SL~EL~~K~~~--~l~l~~~~~~~~lvLeeDGT~VddEeY-----F~t---Lp~nT~lmvL~~ 90 (100)
T 1f2r_I 37 SSLEELRSKACE--LLAIDKSLTPITLVLAEDGTIVDDDDY-----FLC---LPSNTKFVALAC 90 (100)
T ss_dssp SSHHHHHHHHHH--HHCCCGGGCSCEEEESSSCCBCCSSSS-----SSS---SCSCCEEEEECS
T ss_pred CCHHHHHHHHHH--HhccCCCCCceEEEEeeCCcEEechhH-----hhc---CCCCCEEEEEcC
Confidence 489999999988 8888643 3444457998876654 433 335677766655
No 190
>2wlb_A ETP1-FD, electron transfer protein 1, mitochondrial; iron-sulfur, iron, transport, ferredoxin, adrenodoxin-like, electron transport; 2.60A {Schizosaccharomyces pombe}
Probab=42.32 E-value=37 Score=20.47 Aligned_cols=27 Identities=11% Similarity=0.017 Sum_probs=21.8
Q ss_pred cEEEEEEcCCCCCceEEEecCCCcHHHH
Q 034173 9 SVEITVKTIGPAPPSRLSVSSPIKVRDL 36 (102)
Q Consensus 9 ~i~I~vK~~~~~~~~~l~v~~~~TV~~L 36 (102)
.++|++...+|... .++++++.|+.+.
T Consensus 3 ~~~v~~~~~~g~~~-~~~~~~g~tlL~a 29 (103)
T 2wlb_A 3 GIKVFFVTPEGREI-MIEGNEGDSILDL 29 (103)
T ss_dssp CEEEEEECTTCCEE-EEEECTTCBHHHH
T ss_pred ceEEEEEeCCCCEE-EEEECCCCHHHHH
Confidence 46788887788665 7899999999885
No 191
>3e19_A FEOA; transcriptional regulator, metal-binding, iron uptake, beta- transcription regulator, metal binding protein; HET: GOL; 2.00A {Thermococcus thioreducens}
Probab=41.71 E-value=29 Score=19.87 Aligned_cols=27 Identities=15% Similarity=0.106 Sum_probs=15.2
Q ss_pred ccccCCCCCCEEEEEEecCCCceeeEec
Q 034173 73 DVYLQLSNGGNINISLFNLDDLSFQFEF 100 (102)
Q Consensus 73 L~~~~I~~g~ti~l~~~~~~~~~~~~~~ 100 (102)
|.+.||..|..|.+.-+.+.+ .+.+.+
T Consensus 31 L~~lGi~~G~~v~v~~~~p~g-p~~v~v 57 (77)
T 3e19_A 31 LVSMGLTPGATIQVLESHPMG-PIIISV 57 (77)
T ss_dssp HHTTTCSTTCEEEEEEC--CC-CEEEEE
T ss_pred HHHCCCCCCCEEEEEEecCCC-CEEEEE
Confidence 666677777777765555433 444443
No 192
>1jq4_A Methane monooxygenase component C; [2Fe-2S] ferredoxin, oxidoreductase; NMR {Methylococcus capsulatus str} SCOP: d.15.4.2
Probab=41.49 E-value=26 Score=20.99 Aligned_cols=28 Identities=21% Similarity=0.043 Sum_probs=21.6
Q ss_pred cEEEEEEcCCCCCceEEEecCCCcHHHHH
Q 034173 9 SVEITVKTIGPAPPSRLSVSSPIKVRDLR 37 (102)
Q Consensus 9 ~i~I~vK~~~~~~~~~l~v~~~~TV~~LK 37 (102)
+++|+|...++... .++++++.|+.+.=
T Consensus 4 ~~~v~~~~~~~~~~-~~~~~~g~tlL~a~ 31 (98)
T 1jq4_A 4 VHTITAVTEDGESL-RFECRSDEDVITAA 31 (98)
T ss_dssp EEEEEEEETTTEEE-EEEEESCCTHHHHH
T ss_pred cEEEEEEecCCCcE-EEEeCCCChHHHHH
Confidence 57888886666555 78999999998864
No 193
>3pvl_A Myosin VIIA isoform 1; protein complex, novel folding, protein cargo binding, cargo proteins, motor protein-protein transport complex; 2.80A {Mus musculus}
Probab=40.91 E-value=34 Score=28.06 Aligned_cols=47 Identities=17% Similarity=0.177 Sum_probs=38.1
Q ss_pred CcEEEEEEcCCCCCceEEEecCCCcHHHHHHHHHhccCCCCCC-CceEEEe
Q 034173 8 ESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPI-ENLRLVF 57 (102)
Q Consensus 8 ~~i~I~vK~~~~~~~~~l~v~~~~TV~~LK~~Ia~~~~~~ip~-~~qrLi~ 57 (102)
..|.+.|..++|... .+.|++.+|+.+|=+.|+. ..|+.. +-.-|.+
T Consensus 262 ~~i~~~V~llDgt~~-~~~vds~Tt~~ell~~V~~--~LgL~e~~~FgL~~ 309 (655)
T 3pvl_A 262 KPIMLPVTFMDGTTK-TLLTDSATTARELCNALAD--KISLKDRFGFSLYI 309 (655)
T ss_dssp CCEEEEEEETTSCEE-EEEECTTCBHHHHHHHHHH--HTTCSSCTTEEEEE
T ss_pred CceEEEEEecCCceE-EEEEccCCcHHHHHHHHHH--HcCCcccccceeEE
Confidence 468899999999877 8999999999999999998 777543 3455544
No 194
>3lxf_A Ferredoxin; iron, iron-sulfur, metal-binding, metal protein; 2.30A {Novosphingobium aromaticivorans} SCOP: d.15.4.0
Probab=39.95 E-value=30 Score=21.21 Aligned_cols=25 Identities=12% Similarity=0.157 Sum_probs=21.4
Q ss_pred EEEEEcCCCCCceEEEecCCCcHHHH
Q 034173 11 EITVKTIGPAPPSRLSVSSPIKVRDL 36 (102)
Q Consensus 11 ~I~vK~~~~~~~~~l~v~~~~TV~~L 36 (102)
+|++...+|... .++++++.|+.+.
T Consensus 2 ~vt~~~~~G~~~-~~~~~~g~tll~a 26 (104)
T 3lxf_A 2 AILVTTRDGTRT-EIQAEPGLSLMEA 26 (104)
T ss_dssp EEEEECTTSCEE-EEECCTTSBHHHH
T ss_pred EEEEEeCCCCEE-EEEECCCChHHHH
Confidence 688888898876 8999999999885
No 195
>4gmv_A RAS-associated and pleckstrin homology domains-CO protein 1; RA-PH, coiled-coil region, RAS-association domain, pleckstri homology domain; 2.40A {Homo sapiens} PDB: 4gn1_A
Probab=38.74 E-value=48 Score=24.42 Aligned_cols=68 Identities=15% Similarity=0.187 Sum_probs=42.9
Q ss_pred EEEEcCCCCCceEEEecCCCcHHHHHHHHHhccCCCCCCCc-eEEE--e-C---CeecCCCCCCCCCCcc----ccCCCC
Q 034173 12 ITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIEN-LRLV--F-R---GKVLDDTQDDDDRDDV----YLQLSN 80 (102)
Q Consensus 12 I~vK~~~~~~~~~l~v~~~~TV~~LK~~Ia~~~~~~ip~~~-qrLi--~-~---Gk~L~D~~t~~~~~L~----~~~I~~ 80 (102)
|+|=..+|... .+.|++++|+.||=+.++. +.+++... .-|+ + . -|.|.|.+. +. .+....
T Consensus 34 vkv~~~D~ss~-~l~V~~~~TA~dv~~~L~~--k~~~~~~~~W~L~E~~~~l~lER~ledhE~-----V~dvl~~W~~ds 105 (281)
T 4gmv_A 34 IRVHMSDDSSK-TMMVDERQTVRQVLDNLMD--KSHCGYSLDWSLVETVSELQMERIFEDHEN-----LVENLLNWTRDS 105 (281)
T ss_dssp EEEEETTSCEE-EEEEETTCBHHHHHHHHHH--HSCCCCCTTCEEEEEEGGGTEEEECCTTSB-----HHHHHTTSCTTC
T ss_pred EEEEecCCCEE-EEEECCCCcHHHHHHHHHH--hcCCCCCCCeEEEEEcCCccceeccccchh-----HHHHHHhcccCC
Confidence 44445566655 8999999999999999887 77765433 3332 1 1 366766664 43 344555
Q ss_pred CCEEEEE
Q 034173 81 GGNINIS 87 (102)
Q Consensus 81 g~ti~l~ 87 (102)
...+++.
T Consensus 106 ~n~l~f~ 112 (281)
T 4gmv_A 106 QNKLIFM 112 (281)
T ss_dssp CCEEEEE
T ss_pred CceEEEE
Confidence 5565553
No 196
>3tca_A Amyloid beta A4 precursor protein-binding family 1-interacting protein; RA domain, RBD, PH domain; 2.35A {Mus musculus}
Probab=38.06 E-value=51 Score=23.01 Aligned_cols=37 Identities=16% Similarity=0.148 Sum_probs=28.4
Q ss_pred EEEEcCCCCCceEEEecCCCcHHHHHHHHHhccCCCCCCC
Q 034173 12 ITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIE 51 (102)
Q Consensus 12 I~vK~~~~~~~~~l~v~~~~TV~~LK~~Ia~~~~~~ip~~ 51 (102)
|.|=..+|... ++.|++++|+.+|-+.+++ +.+++.+
T Consensus 37 v~v~~~d~~~k-~i~v~~~~ta~ev~~~L~~--k~~~~~~ 73 (291)
T 3tca_A 37 VKVHMDDSSTK-SLMVDERQLARDVLDNLFE--KTHCDCN 73 (291)
T ss_dssp EEEECTTSCEE-EEEEETTCBHHHHHHHHHH--HHCCCCC
T ss_pred EEEEcCCCceE-EEEeCCCCcHHHHHHHHHH--HhCCCCC
Confidence 44445566555 8999999999999999988 7776554
No 197
>3r8s_T 50S ribosomal protein L23; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_T 3j19_T 2wwq_T 3oat_T* 3oas_T* 3ofd_T 3ofc_T 3ofr_T* 3ofz_T* 3og0_T 3ofq_T 3r8t_T 2j28_T 3e1b_M 3e1d_M 3iy9_T 3i1n_T 1p85_R 1p86_R 1vs8_T ...
Probab=37.89 E-value=63 Score=19.96 Aligned_cols=37 Identities=22% Similarity=0.295 Sum_probs=31.4
Q ss_pred EEEecCCCcHHHHHHHHHhccCCCCCCCc-eEEEeCCeec
Q 034173 24 RLSVSSPIKVRDLRKLIATSSANHLPIEN-LRLVFRGKVL 62 (102)
Q Consensus 24 ~l~v~~~~TV~~LK~~Ia~~~~~~ip~~~-qrLi~~Gk~L 62 (102)
.+.|++.+|=-++|+.|+. -.++.+.. -.++..|+.-
T Consensus 31 ~F~V~~~AnK~eIK~AVE~--lf~VkV~~VnT~~~~gK~k 68 (93)
T 3r8s_T 31 VLKVAKDATKAEIKAAVQK--LFEVEVEVVNTLVVKGKVK 68 (93)
T ss_dssp EEEECSSCCHHHHHHHHHH--HSCCCCCEEEEEEECCCBC
T ss_pred EEEECCCCCHHHHHHHHHH--HcCCceEEEEEEEeCCcee
Confidence 8999999999999999999 88888887 4556777654
No 198
>2k5l_A FEOA; structure, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; NMR {Clostridium thermocellum atcc 27405}
Probab=36.93 E-value=38 Score=19.73 Aligned_cols=28 Identities=14% Similarity=0.084 Sum_probs=20.0
Q ss_pred ccccCCCCCCEEEEEEecCCCceeeEec
Q 034173 73 DVYLQLSNGGNINISLFNLDDLSFQFEF 100 (102)
Q Consensus 73 L~~~~I~~g~ti~l~~~~~~~~~~~~~~ 100 (102)
|.+.||..|.+|.+.-+.+-+-.+.+.+
T Consensus 28 L~~lGl~pG~~v~V~~~~p~~gpi~v~v 55 (81)
T 2k5l_A 28 IMDMGITRGCEIYIRKVAPLGDPIQINV 55 (81)
T ss_dssp HHHHTCCTTCEEEEEEECTTSCCEEEEE
T ss_pred HHHCCCCCCCEEEEEEeCCCCCCEEEEE
Confidence 7888999999998776665444555444
No 199
>2inc_C TOUB protein; DIIRON, 4-helix bundle, carboxylate bridge, metalloenzyme, oxidoreductase; HET: P6G; 1.85A {Pseudomonas stutzeri} SCOP: d.15.12.1 PDB: 2ind_C* 3n20_C* 1t0r_C 1t0s_C 1t0q_C* 3n1x_C 3n1y_C* 3n1z_C* 2rdb_C* 3rn9_C* 3rna_C 3rnb_C 3rnc_C 3rne_C 3rnf_C* 3rng_C
Probab=36.28 E-value=75 Score=19.49 Aligned_cols=71 Identities=13% Similarity=-0.010 Sum_probs=52.5
Q ss_pred EEEEcCCCCCceEEEecCCCcHHHHHHHHHhccCCC--C--CCC-ceEEEeCC--eecCCCCCCCCCCccccCCCCCCEE
Q 034173 12 ITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANH--L--PIE-NLRLVFRG--KVLDDTQDDDDRDDVYLQLSNGGNI 84 (102)
Q Consensus 12 I~vK~~~~~~~~~l~v~~~~TV~~LK~~Ia~~~~~~--i--p~~-~qrLi~~G--k~L~D~~t~~~~~L~~~~I~~g~ti 84 (102)
|.-+..+.-...-+.|+.+.|+.++-++++... -| + .|. -.|..++| +.+..+.+ +.+.||.+-+.|
T Consensus 4 l~~~F~gDFV~~LV~VDt~dTmdqVA~kvA~Hs-VGrRV~p~p~~~~rVr~~G~~~~~pr~~t-----vae~gl~P~e~v 77 (83)
T 2inc_C 4 IMSNFERDFVIQLVPVDTEDTMDQVAEKCAYHS-INRRVHPQPEKILRVRRHEDGTLFPRGMI-----VSDAGLRPTETL 77 (83)
T ss_dssp EEEEETTCSBEEEEEECTTCBHHHHHHHHHTTT-BTTTBCCCTTSEEEEEETTTCCEECTTCB-----GGGSCCCTTCEE
T ss_pred eeEEeccccEEEEEEecCCCcHHHHHHHHhhhh-cceecCCCCCCeEEEEecCCccCCCCCCE-----eeccCCCCceEE
Confidence 444455554455679999999999999998522 12 2 233 47888999 99988888 999999999988
Q ss_pred EEEE
Q 034173 85 NISL 88 (102)
Q Consensus 85 ~l~~ 88 (102)
.+..
T Consensus 78 ev~~ 81 (83)
T 2inc_C 78 DIIF 81 (83)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7754
No 200
>3eud_A Protein SHQ1; CS domain HSP20-like domain SHQ1 H/ACA snoRNP ribosome biogenesis, nucleus, nuclear protein; HET: MSE; 2.40A {Saccharomyces cerevisiae}
Probab=35.51 E-value=90 Score=20.21 Aligned_cols=68 Identities=16% Similarity=0.158 Sum_probs=45.4
Q ss_pred CCCCCcEEEEEEcCCCC----CceEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEeCCeecCCCCCCCCCCccccCCC
Q 034173 4 GEISESVEITVKTIGPA----PPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLS 79 (102)
Q Consensus 4 ~~~~~~i~I~vK~~~~~----~~~~l~v~~~~TV~~LK~~Ia~~~~~~ip~~~qrLi~~Gk~L~D~~t~~~~~L~~~~I~ 79 (102)
+++.+-+-|.||.+.-+ .. .+.|..+ ......+|==+||.+.|++.+|..- =++|.+.
T Consensus 23 tQDdefv~I~I~~p~ir~~a~~~-ei~vd~~------------~F~F~~~PYyLRL~lP~~vved~~~-----~A~YD~d 84 (115)
T 3eud_A 23 TQDEEFIFLKIFISNIRFSAVGL-EIIIQEN------------MIIFHLSPYYLRLRFPHELIDDERS-----TAQYDSK 84 (115)
T ss_dssp EECSSEEEEEEECCSCCCCSSSC-EEEEETT------------EEEEEETTEEEEEECSSCEECSTTC-----EEEEETT
T ss_pred EECCCEEEEEEEcCceecccCcc-EEEEeCC------------EEEEecCCeEEEEecCcceecCCCc-----ceEEeCC
Confidence 35567788888887544 23 5555554 2244566667999999999976655 7789887
Q ss_pred CCCEEEEEEec
Q 034173 80 NGGNINISLFN 90 (102)
Q Consensus 80 ~g~ti~l~~~~ 90 (102)
.| +++|.+.+
T Consensus 85 ~g-~~~v~lpK 94 (115)
T 3eud_A 85 DE-CINVKVAK 94 (115)
T ss_dssp TT-EEEEEEEE
T ss_pred Cc-EEEEEEcC
Confidence 76 45555533
No 201
>4gdk_A Ubiquitin-like protein ATG12; protein-protein conjugate, protein-protein complex, ubiquiti protein, E3 ligase, ubiquitin-like fold; 2.70A {Homo sapiens} PDB: 4gdl_A
Probab=33.90 E-value=82 Score=19.23 Aligned_cols=53 Identities=15% Similarity=0.312 Sum_probs=36.4
Q ss_pred CcEEEEEEcCCCCCc---eEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEe-CCeec
Q 034173 8 ESVEITVKTIGPAPP---SRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVF-RGKVL 62 (102)
Q Consensus 8 ~~i~I~vK~~~~~~~---~~l~v~~~~TV~~LK~~Ia~~~~~~ip~~~qrLi~-~Gk~L 62 (102)
..+.|.+|..+.-.. ..+-|+.+.|+.++..-|.. +.++++++--.+| +...+
T Consensus 4 ~Kv~v~fk~~g~~P~l~k~KflVp~~~tv~~~~~~lRk--rL~l~~~~alFlyVnn~~~ 60 (91)
T 4gdk_A 4 KKIDILLKAVGDTPIMKTKKWAVERTRTIQGLIDFIKK--FLKLVASEQLFIYVNQSFA 60 (91)
T ss_dssp CEEEEEEEECSSSCCCSCCEEEEETTCBHHHHHHHHHH--HTTCCSSSCCEEEETTTBC
T ss_pred ceEEEEEEecCCCCcccccEEEcCCCCCHHHHHHHHHH--HhCCCCCCeEEEEECCccC
Confidence 346777776544322 25789999999999999988 8888877644444 44433
No 202
>2l66_A SSO7C4, transcriptional regulator, ABRB family; DNA binding protein, transcription regulator; NMR {Sulfolobus solfataricus}
Probab=33.45 E-value=14 Score=20.13 Aligned_cols=28 Identities=11% Similarity=0.119 Sum_probs=19.5
Q ss_pred CCeecCCCCCCCCCCccccCCCCCCEEEEEEec
Q 034173 58 RGKVLDDTQDDDDRDDVYLQLSNGGNINISLFN 90 (102)
Q Consensus 58 ~Gk~L~D~~t~~~~~L~~~~I~~g~ti~l~~~~ 90 (102)
+|++.-.... ...+||++|+.|.+.+.+
T Consensus 11 kgqi~IPk~i-----r~~lgi~~Gd~v~i~~~~ 38 (53)
T 2l66_A 11 NYQVTIPAKV-----RQKFQIKEGDLVKVTFDE 38 (53)
T ss_dssp SSCBCCCHHH-----HHHSCCCTTCEEEEEECS
T ss_pred CCEEEeCHHH-----HHHcCcCCCCEEEEEEEC
Confidence 4444433344 678899999999988754
No 203
>1wmh_B Partitioning defective-6 homolog alpha; kinase, PB1 domain, OPCA motif, APKC, cell polarity, transferase/cell cycle complex; 1.50A {Homo sapiens} SCOP: d.15.2.2
Probab=33.26 E-value=50 Score=20.30 Aligned_cols=46 Identities=15% Similarity=0.269 Sum_probs=34.8
Q ss_pred EEEEcCCCCCceEEEecCC--CcHHHHHHHHHhccCCCCCCCceEEEeCC
Q 034173 12 ITVKTIGPAPPSRLSVSSP--IKVRDLRKLIATSSANHLPIENLRLVFRG 59 (102)
Q Consensus 12 I~vK~~~~~~~~~l~v~~~--~TV~~LK~~Ia~~~~~~ip~~~qrLi~~G 59 (102)
|.||+.-+..+..++++++ .+-.+|..+++. -.+++.....+-|..
T Consensus 7 l~vKskf~aE~RRFs~d~~~~~~fe~f~~lv~~--lh~L~~~~f~i~Y~D 54 (86)
T 1wmh_B 7 VEVKSKFDAEFRRFALPRASVSGFQEFSRLLRA--VHQIPGLDVLLGYTD 54 (86)
T ss_dssp EEEEEEETTEEEEEEEEGGGCCCHHHHHHHHHH--HTTCTTCCCEEEEEC
T ss_pred EEEEeecCCeeeEeEccCCCCCCHHHHHHHHHH--HcCCCCCCEEEEEEC
Confidence 5566655666767888744 899999999988 777877777777764
No 204
>2h3j_A Hypothetical protein PA4359; NESG, GFT structural genomics, PAT89, PSI-2, protein structure initiative; NMR {Pseudomonas aeruginosa} SCOP: b.34.1.2
Probab=33.23 E-value=40 Score=18.99 Aligned_cols=29 Identities=14% Similarity=0.032 Sum_probs=19.9
Q ss_pred CccccCCCCCCEEEEEEecCCCceeeEec
Q 034173 72 DDVYLQLSNGGNINISLFNLDDLSFQFEF 100 (102)
Q Consensus 72 ~L~~~~I~~g~ti~l~~~~~~~~~~~~~~ 100 (102)
.|.+.||..|.+|.+.-+.+-+-.+.+.+
T Consensus 26 rL~~lGl~~G~~v~v~~~~p~~~p~~v~v 54 (75)
T 2h3j_A 26 RLFSMGLLPGAALRVVRIAPLGDPIQVET 54 (75)
T ss_dssp HHHHHTCCTTCEEEEEECCTTSCCCEEES
T ss_pred HHHHcCCCCCCEEEEEEECCCCCCEEEEE
Confidence 37888999999998776665344444443
No 205
>3mhx_A Putative ferrous iron transport protein A; FEOA, zinc binding, prokaryotic SH3 stenotrophomonus maltophilia, metal transport; 1.70A {Stenotrophomonas maltophilia}
Probab=32.98 E-value=45 Score=19.55 Aligned_cols=29 Identities=10% Similarity=0.060 Sum_probs=19.8
Q ss_pred ccccCCCCCCEEEEEEecCCC-ceeeEecC
Q 034173 73 DVYLQLSNGGNINISLFNLDD-LSFQFEFG 101 (102)
Q Consensus 73 L~~~~I~~g~ti~l~~~~~~~-~~~~~~~~ 101 (102)
|.+.||..|.+|.+.-+.+-+ -++.+.++
T Consensus 31 L~~lGl~pG~~v~V~~~~p~g~~pi~v~v~ 60 (85)
T 3mhx_A 31 LRELGFVKGEEVRMVAKGPVGGEPLLVQVG 60 (85)
T ss_dssp HHHTTCCTTCEEEEEESCSSSCSCEEEEET
T ss_pred HHHCCCCCCCEEEEEEeCCCCCCCEEEEEC
Confidence 788889999888877666533 44544443
No 206
>2k4y_A FEOA-like protein; GFT structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Clostridium acetobutylicum}
Probab=32.72 E-value=47 Score=19.58 Aligned_cols=28 Identities=11% Similarity=0.008 Sum_probs=19.5
Q ss_pred ccccCCCCCCEEEEEEecCCCceeeEec
Q 034173 73 DVYLQLSNGGNINISLFNLDDLSFQFEF 100 (102)
Q Consensus 73 L~~~~I~~g~ti~l~~~~~~~~~~~~~~ 100 (102)
|.+.||..|.+|.+.-+.+-+-.+.+.+
T Consensus 31 L~~mGl~pG~~V~V~~~~p~~gpi~v~v 58 (86)
T 2k4y_A 31 IMDMGIVRGTEIYIEGKAPMGDPIALRL 58 (86)
T ss_dssp HHHHTCCTTCEEEEEEECTTSCSEEEEE
T ss_pred HHHCCCCCCCEEEEEEeCCCCCCEEEEE
Confidence 7788999999888776665444454444
No 207
>2lx9_A Ferrous iron transport protein A; FEOA; NMR {Escherichia coli}
Probab=32.07 E-value=56 Score=19.30 Aligned_cols=28 Identities=14% Similarity=0.072 Sum_probs=18.2
Q ss_pred ccccCCCCCCEEEEEEecCCCceeeEec
Q 034173 73 DVYLQLSNGGNINISLFNLDDLSFQFEF 100 (102)
Q Consensus 73 L~~~~I~~g~ti~l~~~~~~~~~~~~~~ 100 (102)
|.+.|+..|..|.+.-+.|-+-...+.+
T Consensus 26 L~~mGl~pG~~V~Vi~~ap~ggPi~v~v 53 (83)
T 2lx9_A 26 LLSLGMLPGSSFNVVRVAPLGDPIHIET 53 (83)
T ss_dssp HHHSSCCSSSEEEEEEECTTTCCEEEEC
T ss_pred HHHCCCCCCCEEEEEEeCCCCCcEEEEE
Confidence 6777888888887766665444444444
No 208
>2i1s_A Hypothetical protein; methanosarcina mazei,MAD, PSI-2,MCSG, structural genomics, protein structure initiative; 2.30A {Methanosarcina mazei} SCOP: d.343.1.1
Probab=30.57 E-value=65 Score=21.86 Aligned_cols=41 Identities=22% Similarity=0.251 Sum_probs=29.5
Q ss_pred EEEEEEcCCCCCceEEEecCCCcHHHHHHHHHhccCCCCCCCc
Q 034173 10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIEN 52 (102)
Q Consensus 10 i~I~vK~~~~~~~~~l~v~~~~TV~~LK~~Ia~~~~~~ip~~~ 52 (102)
++|.++...+..-..+.|+.+.|..+|=..|.. ..|..-..
T Consensus 11 lrV~L~~~~p~iWRri~Vp~~~TL~~LH~vIq~--afgw~~~H 51 (188)
T 2i1s_A 11 LKLSIKGITPQIWRRIQVPENYTFLDLHKAIQA--VMDWEDYH 51 (188)
T ss_dssp EEEEETTCSSCEEEEEEEETTCBHHHHHHHHHH--HTTCCCCS
T ss_pred EEEEECCCCCCeEEEEEECCCCCHHHHHHHHHH--HhCCCCCE
Confidence 444444334444468999999999999999987 77766443
No 209
>3tve_T 50S ribosomal protein L23; RNA, ribosome, tRNA, translation, mRNA; 3.10A {Thermus thermophilus} PDB: 3pyr_T 3pyo_T 3pyv_T 3pyt_T 3tvh_T 1n88_A 1vsa_R 1vsp_R 2hgj_W 2hgq_W 2hgu_W 2j01_X 2j03_X 2jl6_X 2jl8_X 2v47_X 2v49_X 2wdi_X 2wdj_X 2wdl_X ...
Probab=30.41 E-value=83 Score=19.34 Aligned_cols=38 Identities=18% Similarity=0.204 Sum_probs=31.2
Q ss_pred eEEEecCCCcHHHHHHHHHhccCCCCCCCc-eEEEeCCeec
Q 034173 23 SRLSVSSPIKVRDLRKLIATSSANHLPIEN-LRLVFRGKVL 62 (102)
Q Consensus 23 ~~l~v~~~~TV~~LK~~Ia~~~~~~ip~~~-qrLi~~Gk~L 62 (102)
..+.|++.+|=-++|+.|+. -.++.+.. -.++..|+.-
T Consensus 24 ~~F~V~~~AnK~qIK~aVe~--lf~VkV~~VnT~~~~gK~k 62 (92)
T 3tve_T 24 YTFWVHPKATKTEIKNAVET--AFKVKVVKVNTLHVRGKKK 62 (92)
T ss_dssp EEEEECTTCCHHHHHHHHHH--HTTCCEEEEEEEEECCCEE
T ss_pred EEEEECCCCCHHHHHHHHHH--HhCCceeeeeeeeeCCcee
Confidence 38999999999999999998 88888877 4456777654
No 210
>1yfb_A Transition state regulatory protein ABRB; , homodimer, bioinformatics, swapped-hairpin barrel, transcription; NMR {Bacillus subtilis} SCOP: b.129.1.3 PDB: 1ysf_A 2k1n_A* 1z0r_A 2ro4_A 2fy9_A 2ro3_A
Probab=30.27 E-value=16 Score=20.81 Aligned_cols=31 Identities=13% Similarity=0.083 Sum_probs=22.0
Q ss_pred EEeCCeecCCCCCCCCCCccccCCCCCCEEEEEEec
Q 034173 55 LVFRGKVLDDTQDDDDRDDVYLQLSNGGNINISLFN 90 (102)
Q Consensus 55 Li~~Gk~L~D~~t~~~~~L~~~~I~~g~ti~l~~~~ 90 (102)
+--+|++.-.... ...+||++|+.|.+.+.+
T Consensus 18 v~~kGqItIPkei-----R~~Lgi~~Gd~l~i~~~~ 48 (59)
T 1yfb_A 18 VDELGRVVIPIEL-----RRTLGIAEKDALEIYVDD 48 (59)
T ss_dssp CCTTCEEECCHHH-----HHHTTCCTTCEEEEEEET
T ss_pred ECCCCEEEeCHHH-----HHHcCCCCCCEEEEEEEC
Confidence 3345666644455 778899999999888754
No 211
>1frr_A Ferredoxin I; electron transfer(iron-sulfur protein); 1.80A {Equisetum arvense} SCOP: d.15.4.1
Probab=29.77 E-value=48 Score=19.45 Aligned_cols=25 Identities=20% Similarity=0.129 Sum_probs=18.9
Q ss_pred EEEEEEcCCCCCceEEEecCCCcHHHH
Q 034173 10 VEITVKTIGPAPPSRLSVSSPIKVRDL 36 (102)
Q Consensus 10 i~I~vK~~~~~~~~~l~v~~~~TV~~L 36 (102)
.+|++...+| .. .++++++.|+.+.
T Consensus 2 ~~v~~~~~~g-~~-~~~~~~g~tlL~a 26 (95)
T 1frr_A 2 YKTVLKTPSG-EF-TLDVPEGTTILDA 26 (95)
T ss_dssp EEEEEEETTE-EE-EEEECTTCCHHHH
T ss_pred eEEEEEeCCC-cE-EEEeCCCCcHHHH
Confidence 4677776676 33 7899999999885
No 212
>2bb6_A TCII, TC II, transcobalamin II; alpha_6 - alpha_6 barrel, transport protein; HET: B12; 2.00A {Bos taurus} PDB: 2bbc_A* 2v3n_A* 2v3p_A* 2bb5_A*
Probab=29.09 E-value=2e+02 Score=22.34 Aligned_cols=73 Identities=19% Similarity=0.220 Sum_probs=43.5
Q ss_pred EEEEEEcCCCCCceEEEecCCCcHHHHHHHHHhc-------cC--CC--------CCC-Cc--eEEEeC-CeecCCCCCC
Q 034173 10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATS-------SA--NH--------LPI-EN--LRLVFR-GKVLDDTQDD 68 (102)
Q Consensus 10 i~I~vK~~~~~~~~~l~v~~~~TV~~LK~~Ia~~-------~~--~~--------ip~-~~--qrLi~~-Gk~L~D~~t~ 68 (102)
++++|+..+......++|+.++++.++-++.++. .. .| +.. ++ ..|.-. |+.+.
T Consensus 319 VtytV~~~~~~~~~~Vtv~~gssll~vLk~A~e~~~F~F~~~es~~G~fItSInG~~~~~~~YW~l~~~p~~pl~----- 393 (414)
T 2bb6_A 319 VLLKVSGISPSYRHSVSVPAGSSLEDILKNAQEHGRFRFRTQASLSGPFLTSVLGRKAGEREFWQVLRDPDTPLQ----- 393 (414)
T ss_dssp EEEEEESSSSCEEEEEEEETTCCHHHHHHHHHHSSSCCEEEECCTTSCEEEEETTEECCTTEEEEEEETTTEECS-----
T ss_pred EEEEEeeCCCccceEEEecCCCCHHHHHHHHHhccCCceEeeecCCCceEEEECCCccCCCceEEEEECCCCccc-----
Confidence 4445553222221367889999999998888762 11 11 111 22 222233 56663
Q ss_pred CCCCccccCCCCCCEEEEEEe
Q 034173 69 DDRDDVYLQLSNGGNINISLF 89 (102)
Q Consensus 69 ~~~~L~~~~I~~g~ti~l~~~ 89 (102)
+...+|.+++|+.|.+-..
T Consensus 394 --~Gv~~y~~~~ge~I~f~~~ 412 (414)
T 2bb6_A 394 --QGIADYRPKDGETIELRLV 412 (414)
T ss_dssp --SCTTTCCCCTTCEEEEEEE
T ss_pred --ccccceecCCCCEEEEEee
Confidence 4488999999999987654
No 213
>1uwm_A Ferredoxin VI, FDVI; electron transport, metal-binding, iron-sulfur, iron, 2Fe-2S; 2.0A {Rhodobacter capsulatus} SCOP: d.15.4.1 PDB: 1e9m_A
Probab=28.42 E-value=59 Score=19.60 Aligned_cols=25 Identities=8% Similarity=0.072 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCceEEEecCCCcHHHH
Q 034173 11 EITVKTIGPAPPSRLSVSSPIKVRDL 36 (102)
Q Consensus 11 ~I~vK~~~~~~~~~l~v~~~~TV~~L 36 (102)
+|++...+|... .++++++.|+.+.
T Consensus 2 ~v~~~~~~g~~~-~~~~~~g~tlL~a 26 (106)
T 1uwm_A 2 KIIFIEHNGTRH-EVEAKPGLTVMEA 26 (106)
T ss_dssp EEEEECTTCCEE-EEECCTTSBHHHH
T ss_pred EEEEEeCCCCEE-EEEECCCCcHHHH
Confidence 577766777655 7899999999884
No 214
>1tt5_B Ubiquitin-activating enzyme E1C isoform 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbl_B 3dbr_B 3dbh_B 3gzn_B* 1yov_B 1r4m_B 1r4n_B*
Probab=28.08 E-value=30 Score=26.93 Aligned_cols=61 Identities=10% Similarity=0.265 Sum_probs=27.8
Q ss_pred EEEecCCCcHHHHHHHHHhccCCC--CCCC--------ceEEEeCCe--ecCCCCCCC--CCCccccCCCCCCEEEEE
Q 034173 24 RLSVSSPIKVRDLRKLIATSSANH--LPIE--------NLRLVFRGK--VLDDTQDDD--DRDDVYLQLSNGGNINIS 87 (102)
Q Consensus 24 ~l~v~~~~TV~~LK~~Ia~~~~~~--ip~~--------~qrLi~~Gk--~L~D~~t~~--~~~L~~~~I~~g~ti~l~ 87 (102)
.+.++++.|+.+|-+.+.. +.. +... ..+++|... .|++ .+.+ +++|.++++.+|+.|++.
T Consensus 344 ~~~~~~~~tl~~~~~~l~~--~~~~~~~~~~is~~~~~~~~~ly~~~~~~~~~-~~~~~l~~~l~~l~~~~g~~~~v~ 418 (434)
T 1tt5_B 344 NIQFSPSAKLQEVLDYLTN--SASLQMKSPAITATLEGKNRTLYLQSVTSIEE-RTRPNLSKTLKELGLVDGQELAVA 418 (434)
T ss_dssp CCCC-----CTTHHHHHHH--CSSCCCSSCCCEET----TEECCCCCCTTTTT-TSCC-CCC-----CCCSSCCEECC
T ss_pred eEEECCCccHHHHHHHHhc--cCccceEccEEEEEccCCCcEEEecCCcchhh-hhHhhhcCCHHHcCCCCCCEEEEE
Confidence 3566667787777777776 422 2211 135666432 2221 1111 367999999999998873
No 215
>4i1k_A B3 domain-containing transcription factor VRN1; B3 domain beta-barrel, DNA binding protein; 1.60A {Arabidopsis thaliana}
Probab=27.46 E-value=52 Score=21.66 Aligned_cols=25 Identities=16% Similarity=0.247 Sum_probs=20.2
Q ss_pred ccccCCCCCCEEEEEEecCCCceee
Q 034173 73 DVYLQLSNGGNINISLFNLDDLSFQ 97 (102)
Q Consensus 73 L~~~~I~~g~ti~l~~~~~~~~~~~ 97 (102)
..+++|+.||.+.+.+....+..|+
T Consensus 112 v~dn~L~~GD~cvFeli~~~~~~f~ 136 (146)
T 4i1k_A 112 TLENNLGEGDVCVFELLRTRDFVLK 136 (146)
T ss_dssp HHHTTCCTTCEEEEEECSSSSCEEE
T ss_pred HHHcCCCCCCEEEEEEecCCceEEE
Confidence 4578999999999999887666665
No 216
>3cjs_B 50S ribosomal protein L11, ribosomal protein L11 methyltransferase; S-adenosyl-L-methionine dependent methyltransferase; 1.37A {Thermus thermophilus} SCOP: d.47.1.1 PDB: 3cju_B* 2bcw_A
Probab=26.57 E-value=66 Score=18.96 Aligned_cols=22 Identities=18% Similarity=0.241 Sum_probs=15.4
Q ss_pred CCEEEEEEecCCCceeeEecCC
Q 034173 81 GGNINISLFNLDDLSFQFEFGS 102 (102)
Q Consensus 81 g~ti~l~~~~~~~~~~~~~~~~ 102 (102)
|..|-+.+.-.+|-||.|+.++
T Consensus 50 G~~ipV~Itv~~drsf~~~~kt 71 (72)
T 3cjs_B 50 DAIVPVEITIYADRSFTFVTKT 71 (72)
T ss_dssp SCEEEEEEEEETTSCEEEEECC
T ss_pred CCeEeEEEEEeCCCeEEEEEcC
Confidence 5555555555679999998763
No 217
>2gcx_A FEOA, ferrous iron transport protein A; NMR {Klebsiella pneumoniae} SCOP: b.34.1.2
Probab=26.36 E-value=43 Score=18.96 Aligned_cols=18 Identities=11% Similarity=0.159 Sum_probs=9.6
Q ss_pred ccccCCCCCCEEEEEEec
Q 034173 73 DVYLQLSNGGNINISLFN 90 (102)
Q Consensus 73 L~~~~I~~g~ti~l~~~~ 90 (102)
|.+.||..|..|.+.-+.
T Consensus 26 L~~lGl~pG~~v~v~~~~ 43 (75)
T 2gcx_A 26 LLSLGMLPGSSFHVVRVA 43 (75)
T ss_dssp HTTTTCCSSEEEEECCCC
T ss_pred HHHCCCCCCCEEEEEEeC
Confidence 555566666555544333
No 218
>2r2q_A Gamma-aminobutyric acid receptor-associated protein-like 1; autophagy, ubiquitin homolog, structural genomics consortium, SGC, microtubule; 1.65A {Homo sapiens} PDB: 2l8j_A 1kjt_A 1kot_A 3d32_A 3dow_A 1gnu_A 1klv_A 1km7_A
Probab=25.74 E-value=1.3e+02 Score=18.83 Aligned_cols=52 Identities=23% Similarity=0.250 Sum_probs=35.1
Q ss_pred CCcEEEEEEcCCCCCc-----eEEEecCCCcHHHHHHHHHhccCCCCCCCc-eEEEeCCe
Q 034173 7 SESVEITVKTIGPAPP-----SRLSVSSPIKVRDLRKLIATSSANHLPIEN-LRLVFRGK 60 (102)
Q Consensus 7 ~~~i~I~vK~~~~~~~-----~~l~v~~~~TV~~LK~~Ia~~~~~~ip~~~-qrLi~~Gk 60 (102)
+..|-|.|....++.+ ..+-|+.+.||.+|...|.. +.++++++ .-|..++.
T Consensus 25 p~~IPVive~~~~~~~p~l~k~KflVp~~~tv~~~~~~iRk--~l~l~~~~alfl~vn~~ 82 (110)
T 2r2q_A 25 PDRVPVIVEKAPKARVPDLDKRKYLVPSDLTVGQFYFLIRK--RIHLRPEDALFFFVNNT 82 (110)
T ss_dssp TTEEEEEEEECTTCCSCCCSCCEEEEETTCBHHHHHHHHHH--HTTCCTTSCCEEEBTTB
T ss_pred CCceEEEEEecCCCCCCccceeEEEeCCCCcHHHHHHHHHH--HhcCCCCCcEEEEECCE
Confidence 4567777775543321 14689999999999999977 77888776 44444444
No 219
>1xlq_A Putidaredoxin, PDX; [2Fe-2S], ferredoxin, oxidoreductase; 1.45A {Pseudomonas putida} SCOP: d.15.4.1 PDB: 1xlp_A 1oqr_A 1r7s_A 1pdx_A 1yji_A 1yjj_A 1oqq_A 1xln_A 1xlo_A 3lb8_C* 1put_A 1gpx_A
Probab=25.73 E-value=72 Score=19.18 Aligned_cols=25 Identities=8% Similarity=0.128 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCceEEEecCCCcHHHH
Q 034173 11 EITVKTIGPAPPSRLSVSSPIKVRDL 36 (102)
Q Consensus 11 ~I~vK~~~~~~~~~l~v~~~~TV~~L 36 (102)
+|++...+|... .++++++.|+.+.
T Consensus 2 ~V~~~~~~g~~~-~~~~~~g~tlLea 26 (106)
T 1xlq_A 2 KVVYVSHDGTRR-ELDVADGVSLMQA 26 (106)
T ss_dssp EEEEECTTSCEE-EEECCTTCBHHHH
T ss_pred EEEEEeCCCCEE-EEEECCCCcHHHH
Confidence 567766777655 7899999999885
No 220
>2nnz_A Hypothetical protein; beta-barrel, structural genomics, ontario centre for structu proteomics, OCSP, unknown function; NMR {Archaeoglobus fulgidus}
Probab=25.30 E-value=30 Score=23.31 Aligned_cols=36 Identities=17% Similarity=0.278 Sum_probs=23.4
Q ss_pred CCCCCCcEEEEEEcCCCCCceEEEecCCC---cHHHHHHHH
Q 034173 3 MGEISESVEITVKTIGPAPPSRLSVSSPI---KVRDLRKLI 40 (102)
Q Consensus 3 ~~~~~~~i~I~vK~~~~~~~~~l~v~~~~---TV~~LK~~I 40 (102)
|++-...|+|.+.. ++..+ ..++..+. |+.+|.+++
T Consensus 23 ~~~~~~~~~I~i~~-~~~~~-~a~L~D~~aP~Ta~~f~~~L 61 (153)
T 2nnz_A 23 MGERGVEMRLRIRF-ESAEC-EVELYEEWAPETVRAIADAL 61 (153)
T ss_dssp CCCCSSCCCEEEEE-TTEEE-EECCCTTSCHHHHHHHHHTC
T ss_pred cccccCCeEEEEEE-CCEEE-EEEEcCCCCHHHHHHHHHhC
Confidence 34444456676665 44555 67777888 999987665
No 221
>2y3a_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit beta isoform; transferase, phosphoinositide 3-kinase, RTK; HET: GD9; 3.30A {Mus musculus}
Probab=24.73 E-value=97 Score=27.23 Aligned_cols=35 Identities=6% Similarity=0.092 Sum_probs=29.7
Q ss_pred CCcEEEEEEcCCCCCceEEEecCCCcHHHHHHHHHh
Q 034173 7 SESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIAT 42 (102)
Q Consensus 7 ~~~i~I~vK~~~~~~~~~l~v~~~~TV~~LK~~Ia~ 42 (102)
++.+.|.+=.++|-.+ .++|+.++|+.++|+++-+
T Consensus 49 ~~~v~vd~LLPnGi~i-~~~v~~~~Tl~~iK~~lw~ 83 (1092)
T 2y3a_A 49 DGAISVDFLLPTGIYI-QLEVPREATISYIKQMLWK 83 (1092)
T ss_dssp CSEEEEEEECTTCCEE-EEEEETTCBHHHHHHHHHH
T ss_pred CCceEEEEECCCceEE-EEEecCcccHHHHHHHHHH
Confidence 3567887778898766 8999999999999998876
No 222
>1t3q_A Quinoline 2-oxidoreductase small subunit; QOR, molybdenum, MCD; HET: FAD MCN; 1.80A {Pseudomonas putida} SCOP: a.56.1.1 d.15.4.2
Probab=24.66 E-value=70 Score=21.40 Aligned_cols=29 Identities=14% Similarity=0.247 Sum_probs=20.7
Q ss_pred CcEEEEEEcCCCCCceEEEecCCCcHHHHHH
Q 034173 8 ESVEITVKTIGPAPPSRLSVSSPIKVRDLRK 38 (102)
Q Consensus 8 ~~i~I~vK~~~~~~~~~l~v~~~~TV~~LK~ 38 (102)
+.|.|.+.. +|+.+ .++++++.||.++=.
T Consensus 8 ~~m~i~~~i-ng~~~-~~~v~~~~tlL~~Lr 36 (168)
T 1t3q_A 8 QLMRISATI-NGKPR-VFYVEPRMHLADALR 36 (168)
T ss_dssp CCEEEEEEE-TTEEE-EEEECTTSBHHHHHH
T ss_pred CcceEEEEE-CCEEE-EEecCCCCcHHHHHH
Confidence 446665554 67766 788999999988643
No 223
>2k0q_A Putative uncharacterized protein COPK; copper, heavy metal resistance, open barrel, plasmid- encoded, metal binding protein; NMR {Cupriavidus metallidurans} PDB: 2km0_A 2lel_A 3dso_A 3dsp_A 3n7d_A 3n7e_A
Probab=23.98 E-value=30 Score=20.78 Aligned_cols=14 Identities=14% Similarity=0.382 Sum_probs=11.3
Q ss_pred ccccCCCCCCEEEE
Q 034173 73 DVYLQLSNGGNINI 86 (102)
Q Consensus 73 L~~~~I~~g~ti~l 86 (102)
-..+.++||+|||+
T Consensus 7 ~k~v~LkDGstvyi 20 (74)
T 2k0q_A 7 VKTYDLQDGSKVHV 20 (74)
T ss_dssp EEEEEBTTSCEEEE
T ss_pred eeeEecCCCcEEEE
Confidence 34567999999996
No 224
>1wxm_A A-RAF proto-oncogene serine/threonine-protein kinase; RAS-binding domain (RBD), ubiquitin-like fold, A-RAF kinase, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=23.96 E-value=1.3e+02 Score=18.44 Aligned_cols=68 Identities=12% Similarity=0.110 Sum_probs=44.6
Q ss_pred EEEEcCCCCCceEEEecCCCcHHHHHHHHHhccCCCCCCCceEEE--eCC-eecCCCCCCCCCCccccCCCCCCEEEEEE
Q 034173 12 ITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLV--FRG-KVLDDTQDDDDRDDVYLQLSNGGNINISL 88 (102)
Q Consensus 12 I~vK~~~~~~~~~l~v~~~~TV~~LK~~Ia~~~~~~ip~~~qrLi--~~G-k~L~D~~t~~~~~L~~~~I~~g~ti~l~~ 88 (102)
|.+=-++++.. .++|.++.|+.+-=.++-+ ..++.++.=... ..| +..-|+.+ ++ ..-.|..|.|-+
T Consensus 10 irvhLPn~QrT-~V~VrpG~tlrdaL~KaLk--~R~L~pe~C~Vy~~~~~~~~~IdWdt----Di---~~L~~eEL~Ve~ 79 (86)
T 1wxm_A 10 VKVYLPNKQRT-VVTVRDGMSVYDSLDKALK--VRGLNQDCCVVYRLIKGRKTVTAWDT----AI---APLDGEELIVEV 79 (86)
T ss_dssp EEEECSSSCEE-EEECCSSCBSHHHHHHHHH--TTTCCSSSEEEEEESSSCEEEECSSS----BS---TTCSSCEEEEEE
T ss_pred EEEECCCCCeE-EEEecCCcCHHHHHHHHHH--HcCCCHHHeEEEEcCCCCccccchhH----hh---hhccCcEEEEEE
Confidence 34445777766 8999999999998888877 899988763332 234 34445554 12 234477777755
Q ss_pred e
Q 034173 89 F 89 (102)
Q Consensus 89 ~ 89 (102)
.
T Consensus 80 l 80 (86)
T 1wxm_A 80 L 80 (86)
T ss_dssp C
T ss_pred c
Confidence 3
No 225
>2k5f_A Ferrous iron transport protein A; SH3-like, alpha+beta, GFT, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum}
Probab=23.74 E-value=79 Score=19.57 Aligned_cols=28 Identities=14% Similarity=0.135 Sum_probs=17.4
Q ss_pred ccccCCCCCCEEEEEEecCCCceeeEec
Q 034173 73 DVYLQLSNGGNINISLFNLDDLSFQFEF 100 (102)
Q Consensus 73 L~~~~I~~g~ti~l~~~~~~~~~~~~~~ 100 (102)
|.+.||..|.+|.|.-+.+-+-.+.+.+
T Consensus 27 L~~lGl~pG~~V~Vv~~~P~ggpi~V~v 54 (105)
T 2k5f_A 27 LMDLGLVRGAKLKVLRFAPLGDPIEVNC 54 (105)
T ss_dssp HHHHTCSTTCEEEEEEECSSSCSEEEEE
T ss_pred HHHcCCCCCCEEEEEEECCCCCCEEEEE
Confidence 6777888888887766555333444433
No 226
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=22.48 E-value=41 Score=25.88 Aligned_cols=22 Identities=18% Similarity=0.289 Sum_probs=17.0
Q ss_pred CccccCCCCCCEEEEEEecCCCceeeE
Q 034173 72 DDVYLQLSNGGNINISLFNLDDLSFQF 98 (102)
Q Consensus 72 ~L~~~~I~~g~ti~l~~~~~~~~~~~~ 98 (102)
.|.++|+++|++|.+ .+..|-|
T Consensus 391 ~l~~~g~~~gd~v~i-----~~~~f~~ 412 (416)
T 1udx_A 391 ALRAKGVRAGDLVRI-----GGLEFEY 412 (416)
T ss_dssp HHHTTTCCTTCEEEE-----TTEEEEC
T ss_pred HHHHcCCCCCCEEEE-----ecEEEEE
Confidence 488999999999998 3555554
No 227
>1hmj_A RPB5, protein (subunit H); RNA polymerase, archaea; NMR {Methanocaldococcus jannaschii} SCOP: d.78.1.1
Probab=22.42 E-value=1e+02 Score=18.57 Aligned_cols=48 Identities=6% Similarity=0.185 Sum_probs=32.0
Q ss_pred CcHHHHHHHHHhccCCCCCCCceEEEeCCeecCCCCCCCCCCccccCCCCCCEEEEEEecC
Q 034173 31 IKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGGNINISLFNL 91 (102)
Q Consensus 31 ~TV~~LK~~Ia~~~~~~ip~~~qrLi~~Gk~L~D~~t~~~~~L~~~~I~~g~ti~l~~~~~ 91 (102)
.|-.+.++.+. +.++-+.+.-.|...-.+ ...+|++.|+.|-+.=+..
T Consensus 15 Ls~eEk~~lL~---~y~i~~~qLPrI~~~DPv----------ar~~G~k~GdVvkI~R~S~ 62 (78)
T 1hmj_A 15 VPKEEVEEILK---RYNIKIQQLPKIYEDDPV----------IQEIGAKEGDVVRVIRKSP 62 (78)
T ss_pred CCHHHHHHHHH---HcCCCHHHCCeeeCcCHh----------hHHhCCCCCCEEEEEECCC
Confidence 45667666665 466666665545444333 7888999999998755543
No 228
>1fr3_A MOP, molybdate/tungstate binding protein; molybdate homeostasis, metal binding protein; 1.50A {Sporomusa ovata} SCOP: b.40.6.1
Probab=22.38 E-value=43 Score=18.04 Aligned_cols=19 Identities=16% Similarity=0.116 Sum_probs=15.5
Q ss_pred ccccCCCCCCEEEEEEecC
Q 034173 73 DVYLQLSNGGNINISLFNL 91 (102)
Q Consensus 73 L~~~~I~~g~ti~l~~~~~ 91 (102)
+.+++++.|+.+++.++..
T Consensus 43 ~~~l~L~~G~~V~~~ika~ 61 (67)
T 1fr3_A 43 VADLDLVPGDKVTALVKAT 61 (67)
T ss_dssp HHHHTCCTTCEEEEEECGG
T ss_pred HHhCCCCCCCEEEEEEecc
Confidence 4567999999999988763
No 229
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=22.31 E-value=49 Score=15.87 Aligned_cols=12 Identities=33% Similarity=0.487 Sum_probs=9.3
Q ss_pred CcHHHHHHHHHh
Q 034173 31 IKVRDLRKLIAT 42 (102)
Q Consensus 31 ~TV~~LK~~Ia~ 42 (102)
..|..||++|+.
T Consensus 14 qkiaalkqkias 25 (28)
T 3ra3_A 14 QKIAALKQKIAS 25 (28)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 357889999875
No 230
>2zjr_Q 50S ribosomal protein L23; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.12.1.1 PDB: 1sm1_R* 2aar_R 2d3o_R 2zjp_Q* 2zjq_Q 1nkw_R 3cf5_Q* 3dll_Q* 3pio_Q* 3pip_Q* 1nwy_R* 1nwx_R* 1xbp_R* 1pnu_R 1pny_R 1vor_U 1vou_U 1vow_U 1voy_U 1vp0_U
Probab=22.19 E-value=68 Score=19.87 Aligned_cols=37 Identities=16% Similarity=0.185 Sum_probs=30.1
Q ss_pred EEEecCCCcHHHHHHHHHhccCCCCCCCce-EEEeCCeec
Q 034173 24 RLSVSSPIKVRDLRKLIATSSANHLPIENL-RLVFRGKVL 62 (102)
Q Consensus 24 ~l~v~~~~TV~~LK~~Ia~~~~~~ip~~~q-rLi~~Gk~L 62 (102)
.+.|++.+|=.++|+.|++ -.++.+..- .++..||.-
T Consensus 26 ~F~V~~~anK~eIK~aVE~--lf~VkV~~VNT~~~~gK~k 63 (95)
T 2zjr_Q 26 SFWVSPKATKTEIKDAIQQ--AFGVRVIGISTMNVPGKRK 63 (95)
T ss_dssp EEEECSSCTHHHHHHHHHH--HHCCCCSEEEECCBCCCCC
T ss_pred EEEEcCCCCHHHHHHHHHH--HhCCCceEEEeEEeCCccc
Confidence 8999999999999999998 788888774 445666543
No 231
>1b9r_A Protein (terpredoxin); structure from molmol, ferredoxin; NMR {Pseudomonas SP} SCOP: d.15.4.1
Probab=21.56 E-value=54 Score=19.74 Aligned_cols=25 Identities=0% Similarity=-0.013 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCceEEEecCCCcHHHH
Q 034173 11 EITVKTIGPAPPSRLSVSSPIKVRDL 36 (102)
Q Consensus 11 ~I~vK~~~~~~~~~l~v~~~~TV~~L 36 (102)
+|++...+|... .++++++.|+.+.
T Consensus 2 ~V~~~~~~g~~~-~~~~~~g~tlL~a 26 (105)
T 1b9r_A 2 RVVFIDEQSGEY-AVDAQDGQSLMEV 26 (105)
T ss_dssp EEEECCTTTSCE-EEECCTTCCTTHH
T ss_pred EEEEEeCCCCEE-EEEECCCChHHHH
Confidence 567766677666 8999999998875
No 232
>1rm6_C 4-hydroxybenzoyl-COA reductase gamma subunit; xanthine oxidase family, dimer heterotrimers, oxidoreductase; HET: PCD FAD SF4 EPE; 1.60A {Thauera aromatica} SCOP: a.56.1.1 d.15.4.2 PDB: 1sb3_C*
Probab=21.16 E-value=52 Score=22.02 Aligned_cols=22 Identities=9% Similarity=0.010 Sum_probs=17.1
Q ss_pred CCCCCceEEEecCCCcHHHHHHH
Q 034173 17 IGPAPPSRLSVSSPIKVRDLRKL 39 (102)
Q Consensus 17 ~~~~~~~~l~v~~~~TV~~LK~~ 39 (102)
.+|+.+ .++++++.|+.++=..
T Consensus 9 vNG~~~-~v~~~~~~tLL~~Lr~ 30 (161)
T 1rm6_C 9 LNGRAR-EDLVPDNMLLLDYLRE 30 (161)
T ss_dssp ETTEEE-EEEEETTCBHHHHHHH
T ss_pred ECCEEE-EEecCCcCcHHHHHHH
Confidence 378777 7888999999887543
No 233
>3ny5_A Serine/threonine-protein kinase B-RAF; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics consortium; HET: MSE; 1.99A {Homo sapiens} SCOP: d.15.1.0
Probab=21.14 E-value=1.6e+02 Score=18.41 Aligned_cols=65 Identities=18% Similarity=0.074 Sum_probs=42.3
Q ss_pred EEEcCCCCCceEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEeCC----eecCCCCCCCCCCccccCCCCCCEEEEEE
Q 034173 13 TVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRG----KVLDDTQDDDDRDDVYLQLSNGGNINISL 88 (102)
Q Consensus 13 ~vK~~~~~~~~~l~v~~~~TV~~LK~~Ia~~~~~~ip~~~qrLi~~G----k~L~D~~t~~~~~L~~~~I~~g~ti~l~~ 88 (102)
.+=-++++.. .++|.++.|+.+-=.++-+ ..++.++. .-+|+. +..-|+.+ +++ .-.|..|++-+
T Consensus 17 rvhLPNqQrT-~V~VrpG~tlrdaL~KaLk--~R~L~pe~-C~Vy~~~~~~~~~I~Wdt----Di~---~L~geEL~Ve~ 85 (96)
T 3ny5_A 17 RVFLPNKQRT-VVPARCGVTVRDSLKKALM--MRGLIPEC-CAVYRIQDGEKKPIGWDT----DIS---WLTGEELHVEV 85 (96)
T ss_dssp EEEETTTEEE-EEECCTTCBHHHHHHHHHH--TTTCCGGG-EEEEECC---CEEECTTB----BGG---GGTTCEEEEEE
T ss_pred EEECCCCceE-EEEecCCcCHHHHHHHHHH--HcCCChHH-eEEEEccCCCcCcccccc----cch---hcccceEEehh
Confidence 3345677666 8999999999998777766 88997775 444533 23334544 233 34477777654
No 234
>1rrb_A RAF-1 RBD, RAF proto-oncogene serine/threonine-protein kinase; RAS-binding domain, transferase, riken structural genomics/proteomics initiative; NMR {Rattus norvegicus} SCOP: d.15.1.5
Probab=20.88 E-value=1.5e+02 Score=18.90 Aligned_cols=67 Identities=19% Similarity=0.178 Sum_probs=43.5
Q ss_pred EEEEcCCCCCceEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEe------CCe-ecCCCCCCCCCCccccCCCCCCEE
Q 034173 12 ITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVF------RGK-VLDDTQDDDDRDDVYLQLSNGGNI 84 (102)
Q Consensus 12 I~vK~~~~~~~~~l~v~~~~TV~~LK~~Ia~~~~~~ip~~~qrLi~------~Gk-~L~D~~t~~~~~L~~~~I~~g~ti 84 (102)
|.+=-++++.. .++|.++.|+.+-=.++-+ ..++.++. .-+| .|+ ..-|+.+ ++.. -.|..|
T Consensus 21 ir~hLPNqQrT-~V~VrpG~tlrdaL~KaLk--~R~L~pe~-C~Vy~~~~~~~~~~~~i~Wdt----Di~~---L~geEL 89 (107)
T 1rrb_A 21 IRVFLPNKQRT-VVNVRNGMSLHDCLMKALK--VRGLQPEC-CAVFRLLQEHKGKKARLDWNT----DAAS---LIGEEL 89 (107)
T ss_dssp EEEECTTTCCE-EEECCTTCBHHHHHHHHHH--HHTCCTTT-EEEEECCCSCSSSCEECCTTC----BHHH---HTTSEE
T ss_pred EEEECCCCCeE-EEEecCCcCHHHHHHHHHH--HcCCCHHH-ceeEEccccCCCcccccchhh----hhhh---ccCcEE
Confidence 44556777776 8999999999998877766 88888764 4445 242 2335544 2333 336677
Q ss_pred EEEEe
Q 034173 85 NISLF 89 (102)
Q Consensus 85 ~l~~~ 89 (102)
.|-+.
T Consensus 90 ~Ve~l 94 (107)
T 1rrb_A 90 QVDFL 94 (107)
T ss_dssp EEEEC
T ss_pred EEEEc
Confidence 76553
Done!