BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 034174
(102 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P83877|TXN4A_MOUSE Thioredoxin-like protein 4A OS=Mus musculus GN=Txnl4a PE=2 SV=1
Length = 142
Score = 192 bits (489), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 88/102 (86%), Positives = 97/102 (95%)
Query: 1 MDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNN 60
MDEVL S+AE +KNFAVIYLVDI+EVPDFN MYELYDP TVMFFFRNKHIMIDLGTGNNN
Sbjct: 41 MDEVLYSIAEKVKNFAVIYLVDITEVPDFNKMYELYDPCTVMFFFRNKHIMIDLGTGNNN 100
Query: 61 KINWALKDKQEFIDIVETVYRGARKGRGLVIAPKDYSTKYRY 102
KINWA++DKQE +DI+ETVYRGARKGRGLV++PKDYSTKYRY
Sbjct: 101 KINWAMEDKQEMVDIIETVYRGARKGRGLVVSPKDYSTKYRY 142
>sp|P83876|TXN4A_HUMAN Thioredoxin-like protein 4A OS=Homo sapiens GN=TXNL4A PE=1 SV=1
Length = 142
Score = 192 bits (489), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 88/102 (86%), Positives = 97/102 (95%)
Query: 1 MDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNN 60
MDEVL S+AE +KNFAVIYLVDI+EVPDFN MYELYDP TVMFFFRNKHIMIDLGTGNNN
Sbjct: 41 MDEVLYSIAEKVKNFAVIYLVDITEVPDFNKMYELYDPCTVMFFFRNKHIMIDLGTGNNN 100
Query: 61 KINWALKDKQEFIDIVETVYRGARKGRGLVIAPKDYSTKYRY 102
KINWA++DKQE +DI+ETVYRGARKGRGLV++PKDYSTKYRY
Sbjct: 101 KINWAMEDKQEMVDIIETVYRGARKGRGLVVSPKDYSTKYRY 142
>sp|P87215|DIMI_SCHPO Mitosis protein dim1 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=dim1 PE=1 SV=1
Length = 142
Score = 171 bits (434), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 77/101 (76%), Positives = 91/101 (90%)
Query: 2 DEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNK 61
DEVL +AE + N AVIYLVDI EVPDFN MYELYD +T+MFF+RNKH+MIDLGTGNNNK
Sbjct: 42 DEVLYRIAEKVVNMAVIYLVDIDEVPDFNKMYELYDRTTIMFFYRNKHMMIDLGTGNNNK 101
Query: 62 INWALKDKQEFIDIVETVYRGARKGRGLVIAPKDYSTKYRY 102
INW L+DKQE IDI+ET++RGARKG+GLVI+PKDYST++RY
Sbjct: 102 INWPLEDKQEMIDIIETIFRGARKGKGLVISPKDYSTRHRY 142
>sp|Q553S5|TXN4A_DICDI Thioredoxin-like protein 4A homolog OS=Dictyostelium discoideum
GN=txnl4a PE=3 SV=4
Length = 160
Score = 161 bits (407), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 69/101 (68%), Positives = 90/101 (89%)
Query: 2 DEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNK 61
D++L+S+AE +KN AVIY+VDI+EVPD N+MYELYD MFF+RNKHIM+DLGTGNNNK
Sbjct: 33 DDILASIAEKVKNMAVIYVVDITEVPDLNSMYELYDDCPTMFFYRNKHIMVDLGTGNNNK 92
Query: 62 INWALKDKQEFIDIVETVYRGARKGRGLVIAPKDYSTKYRY 102
INWAL +KQ+ IDI+ETVY+GARKG+GLV +P+D+S +Y++
Sbjct: 93 INWALTNKQDMIDIIETVYKGARKGKGLVNSPRDFSPQYKF 133
>sp|Q06819|DIB1_YEAST Spliceosomal protein DIB1 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=DIB1 PE=1 SV=1
Length = 143
Score = 148 bits (373), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 66/99 (66%), Positives = 83/99 (83%)
Query: 1 MDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNN 60
MDE+LSS+AE ++NFAVIYL DI EV DF+ MYEL DP TVMFF+ NKH+M D GTGNNN
Sbjct: 42 MDELLSSIAERVRNFAVIYLCDIDEVSDFDEMYELTDPMTVMFFYHNKHMMCDFGTGNNN 101
Query: 61 KINWALKDKQEFIDIVETVYRGARKGRGLVIAPKDYSTK 99
K+N+ + DKQE IDI+ET++RGARK +GLV++P DY+ K
Sbjct: 102 KLNFIVDDKQEMIDILETIFRGARKNKGLVVSPYDYNHK 140
>sp|Q75BD8|DIB1_ASHGO Spliceosomal protein DIB1 OS=Ashbya gossypii (strain ATCC 10895 /
CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=DIB1 PE=3 SV=1
Length = 143
Score = 141 bits (356), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 62/99 (62%), Positives = 81/99 (81%)
Query: 1 MDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNN 60
MDE+L S+AE + NFA IY+ D +EVPDFN MYEL DP TVMFF++NKH+ D GTGNNN
Sbjct: 42 MDEILYSIAEKVVNFAAIYVCDTTEVPDFNEMYELQDPMTVMFFYKNKHMRCDFGTGNNN 101
Query: 61 KINWALKDKQEFIDIVETVYRGARKGRGLVIAPKDYSTK 99
K+N+ + +KQE IDI+ETV+RGAR+ +GLV++P DY+ K
Sbjct: 102 KMNFVVDNKQEMIDIIETVFRGARRNKGLVVSPYDYNYK 140
>sp|Q6FMI2|DIB1_CANGA Spliceosomal protein DIB1 OS=Candida glabrata (strain ATCC 2001 /
CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=DIB1 PE=3
SV=1
Length = 142
Score = 140 bits (353), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 62/99 (62%), Positives = 80/99 (80%)
Query: 1 MDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNN 60
MDE+L+SVAE ++NF IYL DI EVPDFN MYEL D +MFF++NKH+M D GTGNNN
Sbjct: 40 MDEMLASVAEKVRNFVAIYLCDIDEVPDFNDMYELNDNMCLMFFYKNKHMMCDFGTGNNN 99
Query: 61 KINWALKDKQEFIDIVETVYRGARKGRGLVIAPKDYSTK 99
K+N+ DKQE IDI+ET++RGARK +G+V++P DY+ K
Sbjct: 100 KMNFLPDDKQELIDIMETIFRGARKNKGIVVSPYDYNHK 138
>sp|Q9NX01|TXN4B_HUMAN Thioredoxin-like protein 4B OS=Homo sapiens GN=TXNL4B PE=1 SV=1
Length = 149
Score = 77.0 bits (188), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 36/96 (37%), Positives = 62/96 (64%), Gaps = 2/96 (2%)
Query: 1 MDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYEL-YDPSTVMFFFRNKHIMIDLGTGNN 59
+D++LS + + A IYLVD+ + + +++ Y PSTV FFF +H+ +D G+ ++
Sbjct: 41 LDDILSKTSSDLSKMAAIYLVDVDQTAVYTQYFDISYIPSTV-FFFNGQHMKVDYGSPDH 99
Query: 60 NKINWALKDKQEFIDIVETVYRGARKGRGLVIAPKD 95
K + K KQ+FID++E +YRGA +G+ +V +P D
Sbjct: 100 TKFVGSFKTKQDFIDLIEVIYRGAMRGKLIVQSPID 135
>sp|Q8BUH1|TXN4B_MOUSE Thioredoxin-like protein 4B OS=Mus musculus GN=Txnl4b PE=2 SV=1
Length = 149
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 36/96 (37%), Positives = 60/96 (62%), Gaps = 2/96 (2%)
Query: 1 MDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYEL-YDPSTVMFFFRNKHIMIDLGTGNN 59
+D++LS + + A IYL D+ P + +++ Y PSTV FFF +H+ D G+ ++
Sbjct: 41 LDDILSKTSADLSKMAAIYLGDVDHTPVYTQYFDISYIPSTV-FFFNGQHMKGDYGSPDH 99
Query: 60 NKINWALKDKQEFIDIVETVYRGARKGRGLVIAPKD 95
K + K KQ+FID++E +YRGA +G+ +V +P D
Sbjct: 100 TKFVGSFKTKQDFIDLIEVIYRGAMRGKLIVQSPID 135
>sp|Q9PR63|GYRA_UREPA DNA gyrase subunit A OS=Ureaplasma parvum serovar 3 (strain ATCC
700970) GN=gyrA PE=3 SV=1
Length = 840
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 15/68 (22%)
Query: 5 LSSVAETIKNFAVIYLVDISEV------PDFNTMYELYDPSTVMFFF---------RNKH 49
L+ V + IK +A + V ISE+ PDF T E+Y S ++ +F R+K+
Sbjct: 204 LTEVCQAIKAYAKNHNVTISEIMEYLKGPDFPTGAEIYGDSGIIKYFNTGRGSVTIRSKY 263
Query: 50 IMIDLGTG 57
+ D+G G
Sbjct: 264 EIEDIGQG 271
>sp|Q73TS2|PCKG_MYCPA Phosphoenolpyruvate carboxykinase [GTP] OS=Mycobacterium
paratuberculosis (strain ATCC BAA-968 / K-10) GN=pckG
PE=3 SV=1
Length = 609
Score = 31.6 bits (70), Expect = 1.3, Method: Composition-based stats.
Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 2/64 (3%)
Query: 30 NTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVYRGARKGRGL 89
N+ L DPS V +I + +G NW D E I+ +YRG +GR +
Sbjct: 68 NSYLALSDPSDVARVESRTYICTEEESGAGPTNNWM--DPTEMRSIMTDLYRGCMRGRTM 125
Query: 90 VIAP 93
+ P
Sbjct: 126 WVVP 129
>sp|P02567|MYO1_CAEEL Myosin-1 OS=Caenorhabditis elegans GN=let-75 PE=2 SV=3
Length = 1938
Score = 30.4 bits (67), Expect = 3.4, Method: Composition-based stats.
Identities = 16/45 (35%), Positives = 25/45 (55%)
Query: 55 GTGNNNKINWALKDKQEFIDIVETVYRGARKGRGLVIAPKDYSTK 99
GT N +NW K+K D V +V + ++K LV +DY+T+
Sbjct: 584 GTVRYNVLNWLEKNKDPLNDTVVSVMKASKKNDLLVEIWQDYTTQ 628
>sp|Q54DP7|MYBR_DICDI Myb-like protein R OS=Dictyostelium discoideum GN=mybR PE=4 SV=2
Length = 394
Score = 29.3 bits (64), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 35/67 (52%), Gaps = 8/67 (11%)
Query: 26 VPDFNTMYELYDPSTVMF----FFRNKHIMIDLGT-GNNNKINWALKDKQEFIDIVETVY 80
V +F + E+ PS V+ K +M+++ T GN ++INW KQ F+ + +
Sbjct: 307 VKNFKSTQEIIKPSPVISGNWSLDEQKALMVEVSTLGNKSEINWFFISKQLFL---KGIS 363
Query: 81 RGARKGR 87
R AR+ +
Sbjct: 364 RNARECQ 370
>sp|P12845|MYO2_CAEEL Myosin-2 OS=Caenorhabditis elegans GN=myo-2 PE=2 SV=2
Length = 1947
Score = 28.9 bits (63), Expect = 9.6, Method: Composition-based stats.
Identities = 15/45 (33%), Positives = 25/45 (55%)
Query: 55 GTGNNNKINWALKDKQEFIDIVETVYRGARKGRGLVIAPKDYSTK 99
GT N +NW K+K D V TV + +++ +V +DY+T+
Sbjct: 590 GTVRYNCLNWLEKNKDPLNDTVVTVMKASKEHALIVEVWQDYTTQ 634
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.139 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,324,270
Number of Sequences: 539616
Number of extensions: 1557650
Number of successful extensions: 3120
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 3108
Number of HSP's gapped (non-prelim): 17
length of query: 102
length of database: 191,569,459
effective HSP length: 71
effective length of query: 31
effective length of database: 153,256,723
effective search space: 4750958413
effective search space used: 4750958413
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)