Query 034174
Match_columns 102
No_of_seqs 103 out of 129
Neff 3.5
Searched_HMMs 46136
Date Fri Mar 29 10:35:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034174.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/034174hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF02966 DIM1: Mitosis protein 100.0 7.7E-64 1.7E-68 366.3 8.8 96 1-96 38-133 (133)
2 KOG3414 Component of the U4/U6 100.0 1.2E-63 2.6E-68 367.9 9.9 102 1-102 41-142 (142)
3 PLN00410 U5 snRNP protein, DIM 100.0 2.7E-42 5.8E-47 251.8 9.4 102 1-102 41-142 (142)
4 cd02986 DLP Dim1 family, Dim1- 100.0 1.4E-40 3.1E-45 236.9 8.4 82 1-83 32-114 (114)
5 cd02954 DIM1 Dim1 family; Dim1 99.8 8E-21 1.7E-25 134.5 9.0 83 1-83 32-114 (114)
6 cd02984 TRX_PICOT TRX domain, 96.4 0.014 3E-07 36.9 5.5 48 1-48 32-79 (97)
7 PF00085 Thioredoxin: Thioredo 96.0 0.053 1.1E-06 33.9 6.9 65 3-77 37-101 (103)
8 PRK11509 hydrogenase-1 operon 94.6 0.28 6.1E-06 35.9 7.6 67 4-80 57-124 (132)
9 cd02975 PfPDO_like_N Pyrococcu 94.1 0.34 7.5E-06 32.9 6.9 68 3-81 42-111 (113)
10 cd02965 HyaE HyaE family; HyaE 94.0 0.12 2.5E-06 36.8 4.6 47 2-48 48-94 (111)
11 cd02989 Phd_like_TxnDC9 Phosdu 93.3 0.16 3.4E-06 34.6 4.0 49 1-50 40-88 (113)
12 cd03065 PDI_b_Calsequestrin_N 93.3 0.47 1E-05 33.6 6.6 66 3-79 51-118 (120)
13 PRK10996 thioredoxin 2; Provis 93.2 0.66 1.4E-05 32.6 7.2 67 3-79 72-138 (139)
14 cd02982 PDI_b'_family Protein 92.9 0.33 7.2E-06 30.8 4.9 45 2-46 31-77 (103)
15 cd02947 TRX_family TRX family; 92.4 0.85 1.8E-05 26.9 6.0 46 2-48 29-74 (93)
16 TIGR01126 pdi_dom protein disu 91.8 0.42 9E-06 29.8 4.3 46 2-47 32-79 (102)
17 TIGR01068 thioredoxin thioredo 91.8 1.9 4E-05 26.6 7.2 66 2-77 33-98 (101)
18 cd03001 PDI_a_P5 PDIa family, 91.3 0.71 1.5E-05 29.1 5.0 52 3-54 38-89 (103)
19 cd03004 PDI_a_ERdj5_C PDIa fam 90.5 0.94 2E-05 29.1 5.1 45 3-47 39-83 (104)
20 cd03002 PDI_a_MPD1_like PDI fa 90.4 0.67 1.5E-05 29.7 4.3 47 2-48 37-85 (109)
21 KOG0910 Thioredoxin-like prote 90.3 1.3 2.9E-05 33.4 6.4 68 1-78 79-146 (150)
22 cd02961 PDI_a_family Protein D 89.7 1.3 2.9E-05 26.7 5.1 46 2-48 34-81 (101)
23 cd02949 TRX_NTR TRX domain, no 89.2 1.7 3.6E-05 28.0 5.5 64 3-76 33-96 (97)
24 cd02963 TRX_DnaJ TRX domain, D 89.0 1.3 2.7E-05 29.7 5.0 55 3-59 44-99 (111)
25 cd02962 TMX2 TMX2 family; comp 88.9 2 4.3E-05 31.5 6.4 51 2-52 66-123 (152)
26 cd02957 Phd_like Phosducin (Ph 88.7 1 2.2E-05 30.0 4.3 49 1-51 42-90 (113)
27 cd03003 PDI_a_ERdj5_N PDIa fam 88.2 1.5 3.2E-05 28.1 4.8 45 3-47 38-82 (101)
28 TIGR02187 GlrX_arch Glutaredox 87.2 4.3 9.2E-05 30.2 7.3 70 3-81 42-112 (215)
29 cd02996 PDI_a_ERp44 PDIa famil 86.4 2.8 6.2E-05 27.2 5.4 56 3-59 38-99 (108)
30 PTZ00443 Thioredoxin domain-co 84.5 6.6 0.00014 30.6 7.4 71 4-84 73-143 (224)
31 cd03005 PDI_a_ERp46 PDIa famil 84.0 4.8 0.0001 25.2 5.4 44 3-47 36-82 (102)
32 cd02956 ybbN ybbN protein fami 83.7 5.8 0.00012 24.9 5.7 43 3-45 32-74 (96)
33 TIGR01295 PedC_BrcD bacterioci 83.3 5.3 0.00012 27.7 5.9 64 2-76 42-120 (122)
34 KOG0907 Thioredoxin [Posttrans 82.5 6.2 0.00013 27.3 5.9 43 4-48 42-84 (106)
35 cd02951 SoxW SoxW family; SoxW 81.8 10 0.00022 25.2 6.7 71 7-86 41-125 (125)
36 cd02985 TRX_CDSP32 TRX family, 81.7 3.4 7.4E-05 27.1 4.3 52 3-57 35-89 (103)
37 cd02995 PDI_a_PDI_a'_C PDIa fa 81.7 5.2 0.00011 24.9 4.9 55 2-57 37-93 (104)
38 cd02999 PDI_a_ERp44_like PDIa 79.0 3.8 8.3E-05 27.0 3.8 44 3-48 38-82 (100)
39 PHA02278 thioredoxin-like prot 77.9 4.8 0.0001 27.3 4.1 45 2-46 33-81 (103)
40 cd03006 PDI_a_EFP1_N PDIa fami 77.5 8.6 0.00019 26.6 5.4 46 4-50 50-96 (113)
41 cd03000 PDI_a_TMX3 PDIa family 77.2 17 0.00036 23.5 6.7 44 4-48 36-82 (104)
42 COG1274 PckA Phosphoenolpyruva 76.3 2.2 4.9E-05 38.4 2.6 37 53-95 96-132 (608)
43 cd02994 PDI_a_TMX PDIa family, 76.0 17 0.00037 23.0 6.3 42 3-44 36-78 (101)
44 PRK09381 trxA thioredoxin; Pro 74.8 20 0.00043 23.1 7.6 49 3-52 41-89 (109)
45 cd07034 TPP_PYR_PFOR_IOR-alpha 74.3 4.7 0.0001 28.1 3.4 31 60-90 124-154 (160)
46 PTZ00051 thioredoxin; Provisio 73.6 14 0.00031 23.1 5.2 41 3-44 38-78 (98)
47 cd02948 TRX_NDPK TRX domain, T 72.4 11 0.00023 24.6 4.6 44 3-48 37-81 (102)
48 cd02953 DsbDgamma DsbD gamma f 70.7 15 0.00032 23.6 4.9 38 7-44 38-79 (104)
49 cd02997 PDI_a_PDIR PDIa family 69.5 22 0.00047 22.1 5.4 46 3-49 37-86 (104)
50 cd02993 PDI_a_APS_reductase PD 69.2 21 0.00045 23.4 5.4 43 3-45 41-86 (109)
51 cd02987 Phd_like_Phd Phosducin 69.0 12 0.00026 27.6 4.7 48 1-50 101-148 (175)
52 cd02955 SSP411 TRX domain, SSP 67.0 34 0.00074 24.1 6.5 68 7-79 42-118 (124)
53 cd02973 TRX_GRX_like Thioredox 66.7 19 0.0004 21.3 4.5 45 3-50 19-63 (67)
54 PRK04210 phosphoenolpyruvate c 65.9 6.4 0.00014 35.6 3.1 38 52-95 88-125 (601)
55 PF11399 DUF3192: Protein of u 64.3 5.3 0.00011 28.6 1.9 32 26-57 46-77 (102)
56 TIGR00424 APS_reduc 5'-adenyly 64.0 17 0.00037 31.5 5.3 53 2-54 390-445 (463)
57 cd02998 PDI_a_ERp38 PDIa famil 63.3 29 0.00062 21.4 5.0 45 3-47 38-85 (105)
58 cd02952 TRP14_like Human TRX-r 60.9 19 0.0004 25.5 4.2 43 2-44 47-97 (119)
59 cd02950 TxlA TRX-like protein 60.3 57 0.0012 22.9 7.4 72 3-83 40-113 (142)
60 cd05796 Ribosomal_P0_like Ribo 59.3 22 0.00049 26.0 4.6 79 3-83 5-103 (163)
61 COG0526 TrxA Thiol-disulfide i 57.9 35 0.00076 19.7 4.9 47 3-49 52-101 (127)
62 cd05795 Ribosomal_P0_L10e Ribo 57.3 22 0.00048 26.3 4.3 79 3-83 5-102 (175)
63 cd00819 PEPCK_GTP Phosphoenolp 57.3 11 0.00024 34.0 3.0 37 53-95 75-111 (579)
64 TIGR02187 GlrX_arch Glutaredox 56.9 47 0.001 24.6 6.0 62 3-78 153-214 (215)
65 TIGR01130 ER_PDI_fam protein d 52.7 44 0.00094 26.4 5.5 47 3-49 38-87 (462)
66 PLN02309 5'-adenylylsulfate re 52.4 38 0.00082 29.3 5.4 45 1-45 383-430 (457)
67 TIGR00411 redox_disulf_1 small 49.9 38 0.00083 20.3 3.9 63 2-78 18-80 (82)
68 cd02992 PDI_a_QSOX PDIa family 49.0 38 0.00083 22.7 4.1 45 3-47 39-88 (114)
69 PF14479 HeLo: Prion-inhibitio 48.6 15 0.00032 26.8 2.1 24 56-79 146-169 (212)
70 cd07038 TPP_PYR_PDC_IPDC_like 45.1 29 0.00063 24.9 3.2 31 60-90 126-156 (162)
71 PHA02152 hypothetical protein 44.4 17 0.00038 25.8 1.9 46 36-85 2-47 (96)
72 cd02958 UAS UAS family; UAS is 42.0 99 0.0022 20.3 6.2 64 7-79 44-110 (114)
73 COG0028 IlvB Thiamine pyrophos 41.7 33 0.00071 30.0 3.5 39 59-97 122-163 (550)
74 KOG4122 Mitochondrial/chloropl 40.7 28 0.0006 21.2 2.1 28 74-101 9-36 (38)
75 KOG2013 SMT3/SUMO-activating c 40.1 22 0.00049 32.2 2.3 39 3-51 26-64 (603)
76 cd07035 TPP_PYR_POX_like Pyrim 39.1 48 0.001 22.8 3.4 30 60-89 118-148 (155)
77 PF05972 APC_15aa: APC 15 resi 38.5 12 0.00025 19.0 0.2 10 92-101 4-13 (16)
78 PF06713 bPH_4: Bacterial PH d 36.7 73 0.0016 20.4 3.8 31 46-78 42-72 (74)
79 PF00821 PEPCK: Phosphoenolpyr 35.9 19 0.0004 32.6 1.2 28 67-94 83-110 (586)
80 cd02983 P5_C P5 family, C-term 35.2 1.6E+02 0.0034 20.7 6.8 39 3-41 44-85 (130)
81 PF01320 Colicin_Pyocin: Colic 34.3 32 0.00069 23.7 1.9 17 67-83 10-26 (85)
82 PTZ00062 glutaredoxin; Provisi 34.3 83 0.0018 24.2 4.4 48 1-59 35-82 (204)
83 KOG3048 Molecular chaperone Pr 34.0 21 0.00046 27.3 1.1 20 36-58 74-93 (153)
84 cd06155 eu_AANH_C_1 A group of 33.9 8.6 0.00019 25.6 -1.0 33 3-35 37-71 (101)
85 cd02988 Phd_like_VIAF Phosduci 32.5 80 0.0017 23.7 3.9 44 1-48 120-163 (192)
86 PTZ00135 60S acidic ribosomal 31.6 92 0.002 25.5 4.4 91 3-95 12-120 (310)
87 PRK00831 rpmJ 50S ribosomal pr 29.9 38 0.00082 20.8 1.5 18 84-101 22-39 (41)
88 PF07978 NIPSNAP: NIPSNAP ; I 29.2 1.5E+02 0.0033 18.7 4.8 60 17-81 4-70 (102)
89 PRK00293 dipZ thiol:disulfide 29.0 1.6E+02 0.0036 25.7 5.8 64 7-79 501-569 (571)
90 PTZ00102 disulphide isomerase; 26.7 2.3E+02 0.0049 22.9 5.8 46 5-50 71-119 (477)
91 PF08800 VirE_N: VirE N-termin 26.6 1.3E+02 0.0027 21.4 3.9 52 9-68 24-79 (136)
92 PF13848 Thioredoxin_6: Thiore 26.4 1.8E+02 0.0039 19.8 4.6 39 3-41 115-156 (184)
93 cd02959 ERp19 Endoplasmic reti 25.4 1.2E+02 0.0026 20.6 3.6 28 17-44 53-83 (117)
94 KOG0191 Thioredoxin/protein di 25.2 1.2E+02 0.0025 24.6 4.0 43 5-47 69-111 (383)
95 cd06150 YjgF_YER057c_UK114_lik 23.8 17 0.00037 24.2 -0.9 32 3-34 40-73 (105)
96 cd07039 TPP_PYR_POX Pyrimidine 23.7 1E+02 0.0022 22.2 3.0 31 60-90 122-152 (164)
97 cd07037 TPP_PYR_MenD Pyrimidin 22.4 96 0.0021 22.7 2.7 30 58-87 117-152 (162)
98 PRK04019 rplP0 acidic ribosoma 22.4 76 0.0016 25.9 2.4 77 3-81 10-103 (330)
99 COG0836 {ManC} Mannose-1-phosp 22.0 97 0.0021 26.4 3.0 36 66-102 118-156 (333)
100 TIGR00004 endoribonuclease L-P 21.9 26 0.00057 23.7 -0.3 20 15-34 73-92 (124)
101 TIGR01866 cas_Csn2 CRISPR-asso 21.0 1.3E+02 0.0028 23.7 3.4 32 62-93 18-49 (216)
102 TIGR01504 glyox_carbo_lig glyo 21.0 1.2E+02 0.0026 26.2 3.4 38 59-96 125-165 (588)
103 PTZ00102 disulphide isomerase; 21.0 2.9E+02 0.0063 22.3 5.5 69 3-80 395-465 (477)
104 PLN02573 pyruvate decarboxylas 20.5 98 0.0021 26.7 2.8 31 60-90 145-175 (578)
105 PF00444 Ribosomal_L36: Riboso 20.4 67 0.0014 19.2 1.3 18 84-101 19-36 (38)
106 TIGR03457 sulphoacet_xsc sulfo 20.3 1.2E+02 0.0025 26.0 3.2 37 59-95 122-160 (579)
107 KOG1643 Triosephosphate isomer 20.2 1.2E+02 0.0027 24.8 3.1 36 56-94 7-43 (247)
No 1
>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.
Probab=100.00 E-value=7.7e-64 Score=366.30 Aligned_cols=96 Identities=79% Similarity=1.376 Sum_probs=89.4
Q ss_pred ChhHHHHhHHhhhcceEEEEEeCCCccchhhhccccCcceEEEEeeCceeEEecCCCCCceEEeecCChhHHHHHHHHHh
Q 034174 1 MDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVY 80 (102)
Q Consensus 1 mDevL~~~a~~v~~~a~IY~vDi~~Vpdfn~myeL~dP~tvMFFfrnkHm~vD~GTgnnnKin~~~~~kqefIDiie~iy 80 (102)
|||+|+++|++|||||+||+||++|||+||+||||+||||+||||||||||||+||||||||||++++|||||||||+||
T Consensus 38 mDeiL~~~a~~v~~~a~IY~vDi~~Vpdfn~~yel~dP~tvmFF~rnkhm~vD~GtgnnnKin~~~~~kqe~iDiie~iy 117 (133)
T PF02966_consen 38 MDEILYKIAEKVKNFAVIYLVDIDEVPDFNQMYELYDPCTVMFFFRNKHMMVDFGTGNNNKINWAFEDKQEFIDIIETIY 117 (133)
T ss_dssp HHHHHHHHHHHHTTTEEEEEEETTTTHCCHHHTTS-SSEEEEEEETTEEEEEESSSSSSSSBCS--SCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcceEEEEEEcccchhhhcccccCCCeEEEEEecCeEEEEEecCCCccEEEEEcCcHHHHHHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccccCceeEEccCCc
Q 034174 81 RGARKGRGLVIAPKDY 96 (102)
Q Consensus 81 rgA~kGkgiv~sP~dy 96 (102)
|||+||||||+||+||
T Consensus 118 rga~kGk~iv~sP~dy 133 (133)
T PF02966_consen 118 RGARKGKGIVVSPKDY 133 (133)
T ss_dssp HHHHTT-SEEE-SS-G
T ss_pred HHhhcCCeeEeCCCCC
Confidence 9999999999999998
No 2
>KOG3414 consensus Component of the U4/U6.U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=1.2e-63 Score=367.94 Aligned_cols=102 Identities=77% Similarity=1.278 Sum_probs=101.1
Q ss_pred ChhHHHHhHHhhhcceEEEEEeCCCccchhhhccccCcceEEEEeeCceeEEecCCCCCceEEeecCChhHHHHHHHHHh
Q 034174 1 MDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVY 80 (102)
Q Consensus 1 mDevL~~~a~~v~~~a~IY~vDi~~Vpdfn~myeL~dP~tvMFFfrnkHm~vD~GTgnnnKin~~~~~kqefIDiie~iy 80 (102)
|||+|+++|++|||||+|||||++|||+|++||||+||+|+||||||||||||+||||||||||++++|||||||||+||
T Consensus 41 mD~~L~~i~~~vsnfa~IylvdideV~~~~~~~~l~~p~tvmfFfn~kHmkiD~gtgdn~Kin~~~~~kq~~Idiie~iy 120 (142)
T KOG3414|consen 41 MDELLSSIAEDVSNFAVIYLVDIDEVPDFVKMYELYDPPTVMFFFNNKHMKIDLGTGDNNKINFAFEDKQEFIDIIETIY 120 (142)
T ss_pred HHHHHHHHHHHHhhceEEEEEecchhhhhhhhhcccCCceEEEEEcCceEEEeeCCCCCceEEEEeccHHHHHHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccccCceeEEccCCccccccC
Q 034174 81 RGARKGRGLVIAPKDYSTKYRY 102 (102)
Q Consensus 81 rgA~kGkgiv~sP~dy~~~~~~ 102 (102)
|||+||||||.||+||+++|+|
T Consensus 121 Rga~KGKgiV~sP~dy~~~y~~ 142 (142)
T KOG3414|consen 121 RGARKGKGIVQSPKDYSTLYRY 142 (142)
T ss_pred HhhhcCCeEEECCcchHhhccC
Confidence 9999999999999999999986
No 3
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=100.00 E-value=2.7e-42 Score=251.82 Aligned_cols=102 Identities=96% Similarity=1.471 Sum_probs=100.3
Q ss_pred ChhHHHHhHHhhhcceEEEEEeCCCccchhhhccccCcceEEEEeeCceeEEecCCCCCceEEeecCChhHHHHHHHHHh
Q 034174 1 MDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVY 80 (102)
Q Consensus 1 mDevL~~~a~~v~~~a~IY~vDi~~Vpdfn~myeL~dP~tvMFFfrnkHm~vD~GTgnnnKin~~~~~kqefIDiie~iy 80 (102)
||++|.++|++++++|.||.||++++|+++++|++.+|+|+||||||.||+||.||||||||||++.+||+|+|++|++|
T Consensus 41 m~p~l~~la~~~~~~~~~~kVDVDe~~dla~~y~I~~~~t~~~ffk~g~~~vd~~tG~~~k~~~~~~~k~~l~~~i~~~~ 120 (142)
T PLN00410 41 MDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPCTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVY 120 (142)
T ss_pred HHHHHHHHHHHcCCceEEEEEECCCCHHHHHHcCccCCCcEEEEEECCeEEEEEecccccccccccCCHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccccCceeEEccCCccccccC
Q 034174 81 RGARKGRGLVIAPKDYSTKYRY 102 (102)
Q Consensus 81 rgA~kGkgiv~sP~dy~~~~~~ 102 (102)
|||+||||||+||+||||++||
T Consensus 121 ~~a~~g~~~~~~~~~~~~~~~~ 142 (142)
T PLN00410 121 RGARKGRGLVISPKDYSTKYRY 142 (142)
T ss_pred HHHhcCCeEEECCCcccccccC
Confidence 9999999999999999999986
No 4
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=100.00 E-value=1.4e-40 Score=236.88 Aligned_cols=82 Identities=39% Similarity=0.819 Sum_probs=80.1
Q ss_pred ChhHHHHhHHhhhcceEEEEEeCCCccchhhhcccc-CcceEEEEeeCceeEEecCCCCCceEEeecCChhHHHHHHHHH
Q 034174 1 MDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELY-DPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETV 79 (102)
Q Consensus 1 mDevL~~~a~~v~~~a~IY~vDi~~Vpdfn~myeL~-dP~tvMFFfrnkHm~vD~GTgnnnKin~~~~~kqefIDiie~i 79 (102)
||++|+++|++++++|+||.||++|+|+++++|++. .|+++ ||+||+|||||+||||||||||++++|||||||||+|
T Consensus 32 mdp~l~ela~~~~~~~~f~kVDVDev~dva~~y~I~amPtfv-ffkngkh~~~d~gt~~~~k~~~~~~~k~~~idi~e~~ 110 (114)
T cd02986 32 LDDILSKTSHDLSKMASIYLVDVDKVPVYTQYFDISYIPSTI-FFFNGQHMKVDYGSPDHTKFVGSFKTKQDFIDLIEVI 110 (114)
T ss_pred HHHHHHHHHHHccCceEEEEEeccccHHHHHhcCceeCcEEE-EEECCcEEEEecCCCCCcEEEEEcCchhHHHHHHHHH
Confidence 689999999999999999999999999999999997 89997 9999999999999999999999999999999999999
Q ss_pred hhcc
Q 034174 80 YRGA 83 (102)
Q Consensus 80 yrgA 83 (102)
||||
T Consensus 111 yr~a 114 (114)
T cd02986 111 YRGA 114 (114)
T ss_pred HcCC
Confidence 9997
No 5
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=99.84 E-value=8e-21 Score=134.49 Aligned_cols=83 Identities=81% Similarity=1.343 Sum_probs=79.4
Q ss_pred ChhHHHHhHHhhhcceEEEEEeCCCccchhhhccccCcceEEEEeeCceeEEecCCCCCceEEeecCChhHHHHHHHHHh
Q 034174 1 MDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVY 80 (102)
Q Consensus 1 mDevL~~~a~~v~~~a~IY~vDi~~Vpdfn~myeL~dP~tvMFFfrnkHm~vD~GTgnnnKin~~~~~kqefIDiie~iy 80 (102)
|+.+|.++|++.++.+.++.||+++.|+..+.|++..-+|++||-+++++..+.|+|||+||+|+++|||+||||||.+|
T Consensus 32 m~P~le~la~~~~~~v~f~kVDvD~~~~la~~~~V~~iPTf~~fk~G~~v~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (114)
T cd02954 32 MDEVLAKIAEDVSNFAVIYLVDIDEVPDFNKMYELYDPPTVMFFFRNKHMKIDLGTGNNNKINWVFEDKQEFIDIIETIY 111 (114)
T ss_pred HHHHHHHHHHHccCceEEEEEECCCCHHHHHHcCCCCCCEEEEEECCEEEEEEcCCCCCceEEEecCcHHHHHHHHHHHh
Confidence 57789999999998889999999999999999999888899999999999999999999999999999999999999999
Q ss_pred hcc
Q 034174 81 RGA 83 (102)
Q Consensus 81 rgA 83 (102)
|+|
T Consensus 112 ~~~ 114 (114)
T cd02954 112 RGA 114 (114)
T ss_pred cCC
Confidence 986
No 6
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=96.36 E-value=0.014 Score=36.91 Aligned_cols=48 Identities=19% Similarity=0.399 Sum_probs=39.6
Q ss_pred ChhHHHHhHHhhhcceEEEEEeCCCccchhhhccccCcceEEEEeeCc
Q 034174 1 MDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNK 48 (102)
Q Consensus 1 mDevL~~~a~~v~~~a~IY~vDi~~Vpdfn~myeL~dP~tvMFFfrnk 48 (102)
|++.|.+++++..+-..++.+|.++.|+..+.|.+...+|++||-+++
T Consensus 32 ~~~~l~~l~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~ 79 (97)
T cd02984 32 MNQVFEELAKEAFPSVLFLSIEAEELPEISEKFEITAVPTFVFFRNGT 79 (97)
T ss_pred HhHHHHHHHHHhCCceEEEEEccccCHHHHHhcCCccccEEEEEECCE
Confidence 467788888887666788999999999999999998888877776554
No 7
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=96.02 E-value=0.053 Score=33.88 Aligned_cols=65 Identities=22% Similarity=0.382 Sum_probs=47.8
Q ss_pred hHHHHhHHhhhcceEEEEEeCCCccchhhhccccCcceEEEEeeCceeEEecCCCCCceEEeecCChhHHHHHHH
Q 034174 3 EVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVE 77 (102)
Q Consensus 3 evL~~~a~~v~~~a~IY~vDi~~Vpdfn~myeL~dP~tvMFFfrnkHm~vD~GTgnnnKin~~~~~kqefIDiie 77 (102)
..|.+++++.++=..++.+|.++-+++.+-|++...+|++||-+++... .+++. .+++++++.|+
T Consensus 37 ~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~g~~~~---------~~~g~-~~~~~l~~~i~ 101 (103)
T PF00085_consen 37 PILEKLAKEYKDNVKFAKVDCDENKELCKKYGVKSVPTIIFFKNGKEVK---------RYNGP-RNAESLIEFIE 101 (103)
T ss_dssp HHHHHHHHHTTTTSEEEEEETTTSHHHHHHTTCSSSSEEEEEETTEEEE---------EEESS-SSHHHHHHHHH
T ss_pred ceecccccccccccccchhhhhccchhhhccCCCCCCEEEEEECCcEEE---------EEECC-CCHHHHHHHHH
Confidence 4678888888866678999999999999999999888877665455443 33333 35566666654
No 8
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=94.57 E-value=0.28 Score=35.85 Aligned_cols=67 Identities=7% Similarity=0.219 Sum_probs=51.1
Q ss_pred HHHHhHHhhhcc-eEEEEEeCCCccchhhhccccCcceEEEEeeCceeEEecCCCCCceEEeecCChhHHHHHHHHHh
Q 034174 4 VLSSVAETIKNF-AVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVY 80 (102)
Q Consensus 4 vL~~~a~~v~~~-a~IY~vDi~~Vpdfn~myeL~dP~tvMFFfrnkHm~vD~GTgnnnKin~~~~~kqefIDiie~iy 80 (102)
||.+++++.... ..++.||+++-|+.-.-|.+.-=+|++||=+++-+- ++++ +.+|+++...|+.+.
T Consensus 57 vleELa~e~~~~~v~~akVDiD~~~~LA~~fgV~siPTLl~FkdGk~v~---------~i~G-~~~k~~l~~~I~~~L 124 (132)
T PRK11509 57 MIGELLREFPDYTWQVAIADLEQSEAIGDRFGVFRFPATLVFTGGNYRG---------VLNG-IHPWAELINLMRGLV 124 (132)
T ss_pred HHHHHHHHhcCCceEEEEEECCCCHHHHHHcCCccCCEEEEEECCEEEE---------EEeC-cCCHHHHHHHHHHHh
Confidence 688899988756 789999999999999999997656877775554432 3333 457788888888654
No 9
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=94.12 E-value=0.34 Score=32.86 Aligned_cols=68 Identities=19% Similarity=0.332 Sum_probs=47.0
Q ss_pred hHHHHhHHhhhcceEEEEEeCCCccchhhhccccCcceEEEEeeCceeEEecCCCCCc--eEEeecCChhHHHHHHHHHh
Q 034174 3 EVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNN--KINWALKDKQEFIDIVETVY 80 (102)
Q Consensus 3 evL~~~a~~v~~~a~IY~vDi~~Vpdfn~myeL~dP~tvMFFfrnkHm~vD~GTgnnn--Kin~~~~~kqefIDiie~iy 80 (102)
.+|.+++++. .-..++.+|+++-|+..+-|.+.-=+|+++| ++ .|... ++.+ ..++.||.++|+.|+
T Consensus 42 ~~l~~la~~~-~~i~~~~vd~d~~~~l~~~~~v~~vPt~~i~-~~--------g~~~~~~~~~G-~~~~~el~~~i~~i~ 110 (113)
T cd02975 42 QLLEELSELS-DKLKLEIYDFDEDKEKAEKYGVERVPTTIFL-QD--------GGKDGGIRYYG-LPAGYEFASLIEDIV 110 (113)
T ss_pred HHHHHHHHhc-CceEEEEEeCCcCHHHHHHcCCCcCCEEEEE-eC--------CeecceEEEEe-cCchHHHHHHHHHHH
Confidence 4556666553 3467899999999999999999654565444 32 12222 3444 677799999999998
Q ss_pred h
Q 034174 81 R 81 (102)
Q Consensus 81 r 81 (102)
.
T Consensus 111 ~ 111 (113)
T cd02975 111 R 111 (113)
T ss_pred h
Confidence 5
No 10
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=94.05 E-value=0.12 Score=36.76 Aligned_cols=47 Identities=11% Similarity=0.204 Sum_probs=40.6
Q ss_pred hhHHHHhHHhhhcceEEEEEeCCCccchhhhccccCcceEEEEeeCc
Q 034174 2 DEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNK 48 (102)
Q Consensus 2 DevL~~~a~~v~~~a~IY~vDi~~Vpdfn~myeL~dP~tvMFFfrnk 48 (102)
..+|.++|++..+-..++.||+++-|....-|.+..-+|+|||-+++
T Consensus 48 ~P~leela~e~~~~v~f~kVdid~~~~la~~f~V~sIPTli~fkdGk 94 (111)
T cd02965 48 AVVLPELLKAFPGRFRAAVVGRADEQALAARFGVLRTPALLFFRDGR 94 (111)
T ss_pred HhHHHHHHHHCCCcEEEEEEECCCCHHHHHHcCCCcCCEEEEEECCE
Confidence 45788999998888889999999999999999998777988887665
No 11
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=93.27 E-value=0.16 Score=34.64 Aligned_cols=49 Identities=20% Similarity=0.240 Sum_probs=39.0
Q ss_pred ChhHHHHhHHhhhcceEEEEEeCCCccchhhhccccCcceEEEEeeCcee
Q 034174 1 MDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHI 50 (102)
Q Consensus 1 mDevL~~~a~~v~~~a~IY~vDi~~Vpdfn~myeL~dP~tvMFFfrnkHm 50 (102)
|+.+|..++++..+ ..+|-+|+++.|+..+-|.+..=+|++||.+++=+
T Consensus 40 ~~p~l~~la~~~~~-i~f~~Vd~~~~~~l~~~~~v~~vPt~l~fk~G~~v 88 (113)
T cd02989 40 MDKHLEILAKKHLE-TKFIKVNAEKAPFLVEKLNIKVLPTVILFKNGKTV 88 (113)
T ss_pred HHHHHHHHHHHcCC-CEEEEEEcccCHHHHHHCCCccCCEEEEEECCEEE
Confidence 35567778877766 57899999999999999999776688888877633
No 12
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=93.26 E-value=0.47 Score=33.58 Aligned_cols=66 Identities=14% Similarity=0.216 Sum_probs=46.5
Q ss_pred hHHHHhHHhh--hcceEEEEEeCCCccchhhhccccCcceEEEEeeCceeEEecCCCCCceEEeecCChhHHHHHHHHH
Q 034174 3 EVLSSVAETI--KNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETV 79 (102)
Q Consensus 3 evL~~~a~~v--~~~a~IY~vDi~~Vpdfn~myeL~dP~tvMFFfrnkHm~vD~GTgnnnKin~~~~~kqefIDiie~i 79 (102)
.+|+++|.+. +.=+.++-||+++-|+.-+-|.+..-+|+++|-+++ .++ =+|.. +++++...|+.+
T Consensus 51 p~~~~~aa~~l~~~~v~~~kVD~d~~~~La~~~~I~~iPTl~lfk~G~--~v~-~~G~~--------~~~~l~~~l~~~ 118 (120)
T cd03065 51 ELVLELAAQVLEDKGIGFGLVDSKKDAKVAKKLGLDEEDSIYVFKDDE--VIE-YDGEF--------AADTLVEFLLDL 118 (120)
T ss_pred hhHHHHHHHHhhcCCCEEEEEeCCCCHHHHHHcCCccccEEEEEECCE--EEE-eeCCC--------CHHHHHHHHHHH
Confidence 3566677665 444899999999999999999998877987776554 344 22322 457777666654
No 13
>PRK10996 thioredoxin 2; Provisional
Probab=93.18 E-value=0.66 Score=32.55 Aligned_cols=67 Identities=18% Similarity=0.307 Sum_probs=46.6
Q ss_pred hHHHHhHHhhhcceEEEEEeCCCccchhhhccccCcceEEEEeeCceeEEecCCCCCceEEeecCChhHHHHHHHHH
Q 034174 3 EVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETV 79 (102)
Q Consensus 3 evL~~~a~~v~~~a~IY~vDi~~Vpdfn~myeL~dP~tvMFFfrnkHm~vD~GTgnnnKin~~~~~kqefIDiie~i 79 (102)
.+|.+++++.+.-..++.+|+++.|++.+-|.+...+|++|| ++..+ ++--.| . .+++++.+.++.+
T Consensus 72 ~~l~~l~~~~~~~v~~~~vd~~~~~~l~~~~~V~~~Ptlii~-~~G~~-v~~~~G-------~-~~~e~l~~~l~~~ 138 (139)
T PRK10996 72 PIFEDVAAERSGKVRFVKVNTEAERELSARFRIRSIPTIMIF-KNGQV-VDMLNG-------A-VPKAPFDSWLNEA 138 (139)
T ss_pred HHHHHHHHHhCCCeEEEEEeCCCCHHHHHhcCCCccCEEEEE-ECCEE-EEEEcC-------C-CCHHHHHHHHHHh
Confidence 467778877776677788999999999999999877776555 54443 333223 2 3567777777654
No 14
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=92.87 E-value=0.33 Score=30.83 Aligned_cols=45 Identities=18% Similarity=0.207 Sum_probs=37.4
Q ss_pred hhHHHHhHHhhhcceEEEEEeCCCccchhhhcccc--CcceEEEEee
Q 034174 2 DEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELY--DPSTVMFFFR 46 (102)
Q Consensus 2 DevL~~~a~~v~~~a~IY~vDi~~Vpdfn~myeL~--dP~tvMFFfr 46 (102)
-+.|.++|++.+.-..++.+|.++-|++.+.|.|. ..+|+++|-.
T Consensus 31 ~~~~~~vA~~~~~~v~f~~vd~~~~~~~~~~~~i~~~~~P~~~~~~~ 77 (103)
T cd02982 31 RERFKEVAKKFKGKLLFVVVDADDFGRHLEYFGLKEEDLPVIAIINL 77 (103)
T ss_pred HHHHHHHHHHhCCeEEEEEEchHhhHHHHHHcCCChhhCCEEEEEec
Confidence 46788999998877899999999999999999997 6777666543
No 15
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=92.40 E-value=0.85 Score=26.87 Aligned_cols=46 Identities=28% Similarity=0.385 Sum_probs=34.7
Q ss_pred hhHHHHhHHhhhcceEEEEEeCCCccchhhhccccCcceEEEEeeCc
Q 034174 2 DEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNK 48 (102)
Q Consensus 2 DevL~~~a~~v~~~a~IY~vDi~~Vpdfn~myeL~dP~tvMFFfrnk 48 (102)
.+.|.+++.+ .+-..++.+|.++.+++.+-|.+...+|+.+|-+++
T Consensus 29 ~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~v~~~P~~~~~~~g~ 74 (93)
T cd02947 29 APVLEELAEE-YPKVKFVKVDVDENPELAEEYGVRSIPTFLFFKNGK 74 (93)
T ss_pred hHHHHHHHHH-CCCceEEEEECCCChhHHHhcCcccccEEEEEECCE
Confidence 4667777776 566778999999999999999997666655554455
No 16
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=91.79 E-value=0.42 Score=29.81 Aligned_cols=46 Identities=20% Similarity=0.268 Sum_probs=35.6
Q ss_pred hhHHHHhHHhhhc--ceEEEEEeCCCccchhhhccccCcceEEEEeeC
Q 034174 2 DEVLSSVAETIKN--FAVIYLVDISEVPDFNTMYELYDPSTVMFFFRN 47 (102)
Q Consensus 2 DevL~~~a~~v~~--~a~IY~vDi~~Vpdfn~myeL~dP~tvMFFfrn 47 (102)
...|.+++...+. -..++.+|.++-|++.+-|.+...+|++||-.|
T Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~i~~~P~~~~~~~~ 79 (102)
T TIGR01126 32 APEYEKLAKELKGDPDIVLAKVDATAEKDLASRFGVSGFPTIKFFPKG 79 (102)
T ss_pred ChHHHHHHHHhccCCceEEEEEEccchHHHHHhCCCCcCCEEEEecCC
Confidence 3567778877765 567899999999999999999887886555444
No 17
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=91.76 E-value=1.9 Score=26.57 Aligned_cols=66 Identities=18% Similarity=0.369 Sum_probs=44.2
Q ss_pred hhHHHHhHHhhhcceEEEEEeCCCccchhhhccccCcceEEEEeeCceeEEecCCCCCceEEeecCChhHHHHHHH
Q 034174 2 DEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVE 77 (102)
Q Consensus 2 DevL~~~a~~v~~~a~IY~vDi~~Vpdfn~myeL~dP~tvMFFfrnkHm~vD~GTgnnnKin~~~~~kqefIDiie 77 (102)
.+.|.+++++..+-..++.+|.++-+.+.+-|.+..-+|++|| ++... +.-..|. .+.+++.+.++
T Consensus 33 ~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~P~~~~~-~~g~~-~~~~~g~--------~~~~~l~~~l~ 98 (101)
T TIGR01068 33 APILEELAKEYEGKVKFVKLNVDENPDIAAKYGIRSIPTLLLF-KNGKE-VDRSVGA--------LPKAALKQLIN 98 (101)
T ss_pred CHHHHHHHHHhcCCeEEEEEECCCCHHHHHHcCCCcCCEEEEE-eCCcE-eeeecCC--------CCHHHHHHHHH
Confidence 3567788877776688899999999999888998766665455 54322 2222332 24566666665
No 18
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=91.31 E-value=0.71 Score=29.11 Aligned_cols=52 Identities=17% Similarity=0.147 Sum_probs=39.2
Q ss_pred hHHHHhHHhhhcceEEEEEeCCCccchhhhccccCcceEEEEeeCceeEEec
Q 034174 3 EVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMIDL 54 (102)
Q Consensus 3 evL~~~a~~v~~~a~IY~vDi~~Vpdfn~myeL~dP~tvMFFfrnkHm~vD~ 54 (102)
..+.+++++.+.-..++.+|.++-++..+-|.+...+|+++|-.+++...++
T Consensus 38 ~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~i~~~P~~~~~~~~~~~~~~~ 89 (103)
T cd03001 38 PEWKKAAKALKGIVKVGAVDADVHQSLAQQYGVRGFPTIKVFGAGKNSPQDY 89 (103)
T ss_pred HHHHHHHHHhcCCceEEEEECcchHHHHHHCCCCccCEEEEECCCCcceeec
Confidence 3567778877777788999999999999999998888876665444544444
No 19
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=90.48 E-value=0.94 Score=29.05 Aligned_cols=45 Identities=16% Similarity=0.126 Sum_probs=35.6
Q ss_pred hHHHHhHHhhhcceEEEEEeCCCccchhhhccccCcceEEEEeeC
Q 034174 3 EVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRN 47 (102)
Q Consensus 3 evL~~~a~~v~~~a~IY~vDi~~Vpdfn~myeL~dP~tvMFFfrn 47 (102)
..+.+++++.+.-..++.+|.++-++..+-|.+..-+|+++|-.+
T Consensus 39 p~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g 83 (104)
T cd03004 39 PELRKAARALKGKVKVGSVDCQKYESLCQQANIRAYPTIRLYPGN 83 (104)
T ss_pred HHHHHHHHHhcCCcEEEEEECCchHHHHHHcCCCcccEEEEEcCC
Confidence 456778888777788899999999999888999876786666433
No 20
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=90.36 E-value=0.67 Score=29.69 Aligned_cols=47 Identities=17% Similarity=0.174 Sum_probs=36.9
Q ss_pred hhHHHHhHHhhhcceEEEEEeCCC--ccchhhhccccCcceEEEEeeCc
Q 034174 2 DEVLSSVAETIKNFAVIYLVDISE--VPDFNTMYELYDPSTVMFFFRNK 48 (102)
Q Consensus 2 DevL~~~a~~v~~~a~IY~vDi~~--Vpdfn~myeL~dP~tvMFFfrnk 48 (102)
...+.+++++...-..++.+|.++ .+++.+-|.+..-+|+++|-+++
T Consensus 37 ~~~~~~~a~~~~~~~~~~~v~~~~~~~~~~~~~~~i~~~Pt~~~~~~~~ 85 (109)
T cd03002 37 KPEYAKAAKELDGLVQVAAVDCDEDKNKPLCGKYGVQGFPTLKVFRPPK 85 (109)
T ss_pred ChHHHHHHHHhcCCceEEEEecCccccHHHHHHcCCCcCCEEEEEeCCC
Confidence 345777888887777788999988 88899889998888876665554
No 21
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=90.26 E-value=1.3 Score=33.42 Aligned_cols=68 Identities=18% Similarity=0.364 Sum_probs=51.8
Q ss_pred ChhHHHHhHHhhhcceEEEEEeCCCccchhhhccccCcceEEEEeeCceeEEecCCCCCceEEeecCChhHHHHHHHH
Q 034174 1 MDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVET 78 (102)
Q Consensus 1 mDevL~~~a~~v~~~a~IY~vDi~~Vpdfn~myeL~dP~tvMFFfrnkHm~vD~GTgnnnKin~~~~~kqefIDiie~ 78 (102)
|+.+|.+++.+.++--..|.+|+++=|++-.=|++.-=+|++-|=++.-+ .++.++.+. ..+...|+.
T Consensus 79 l~P~l~~~~~~~~g~~k~~kvdtD~~~ela~~Y~I~avPtvlvfknGe~~---------d~~vG~~~~-~~l~~~i~k 146 (150)
T KOG0910|consen 79 LGPILEELVSEYAGKFKLYKVDTDEHPELAEDYEISAVPTVLVFKNGEKV---------DRFVGAVPK-EQLRSLIKK 146 (150)
T ss_pred hhHHHHHHHHhhcCeEEEEEEccccccchHhhcceeeeeEEEEEECCEEe---------eeecccCCH-HHHHHHHHH
Confidence 56789999999999999999999999999999999665666777665544 466666554 445555553
No 22
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=89.69 E-value=1.3 Score=26.72 Aligned_cols=46 Identities=20% Similarity=0.240 Sum_probs=35.7
Q ss_pred hhHHHHhHHhh--hcceEEEEEeCCCccchhhhccccCcceEEEEeeCc
Q 034174 2 DEVLSSVAETI--KNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNK 48 (102)
Q Consensus 2 DevL~~~a~~v--~~~a~IY~vDi~~Vpdfn~myeL~dP~tvMFFfrnk 48 (102)
...+.++++.+ ..-..++.+|.++-+.+.+-|.+..-+|+ ++|++.
T Consensus 34 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~Pt~-~~~~~~ 81 (101)
T cd02961 34 APEYEKLAKELKGDGKVVVAKVDCTANNDLCSEYGVRGYPTI-KLFPNG 81 (101)
T ss_pred hHHHHHHHHHhccCCceEEEEeeccchHHHHHhCCCCCCCEE-EEEcCC
Confidence 35677888888 46788899999999999999999876674 555544
No 23
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=89.15 E-value=1.7 Score=27.97 Aligned_cols=64 Identities=22% Similarity=0.399 Sum_probs=41.2
Q ss_pred hHHHHhHHhhhcceEEEEEeCCCccchhhhccccCcceEEEEeeCceeEEecCCCCCceEEeecCChhHHHHHH
Q 034174 3 EVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIV 76 (102)
Q Consensus 3 evL~~~a~~v~~~a~IY~vDi~~Vpdfn~myeL~dP~tvMFFfrnkHm~vD~GTgnnnKin~~~~~kqefIDii 76 (102)
..|.+++++.+.=..++.+|+++-|++.+-|.+..-+|++|| ++..+ ++-..| ..++++|.+.+
T Consensus 33 ~~l~~l~~~~~~~v~~~~id~d~~~~l~~~~~v~~vPt~~i~-~~g~~-v~~~~g--------~~~~~~~~~~l 96 (97)
T cd02949 33 PILNKVIDEFDGAVHFVEIDIDEDQEIAEAAGIMGTPTVQFF-KDKEL-VKEISG--------VKMKSEYREFI 96 (97)
T ss_pred HHHHHHHHHhCCceEEEEEECCCCHHHHHHCCCeeccEEEEE-ECCeE-EEEEeC--------CccHHHHHHhh
Confidence 456677777764456789999999999999998765565444 55433 333333 33446666554
No 24
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=89.04 E-value=1.3 Score=29.66 Aligned_cols=55 Identities=9% Similarity=0.018 Sum_probs=37.8
Q ss_pred hHHHHhHHhhhcc-eEEEEEeCCCccchhhhccccCcceEEEEeeCceeEEecCCCCC
Q 034174 3 EVLSSVAETIKNF-AVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNN 59 (102)
Q Consensus 3 evL~~~a~~v~~~-a~IY~vDi~~Vpdfn~myeL~dP~tvMFFfrnkHm~vD~GTgnn 59 (102)
.++.+++++.+.- ..++-||+++-++..+-|.+..-+|+++| ++.. .+...+|..
T Consensus 44 p~~~~l~~~~~~~~v~~~~vd~d~~~~l~~~~~V~~~Pt~~i~-~~g~-~~~~~~G~~ 99 (111)
T cd02963 44 PVWKEVIQELEPLGVGIATVNAGHERRLARKLGAHSVPAIVGI-INGQ-VTFYHDSSF 99 (111)
T ss_pred HHHHHHHHHHHhcCceEEEEeccccHHHHHHcCCccCCEEEEE-ECCE-EEEEecCCC
Confidence 4567777777642 56789999999999999999765676566 4443 355555543
No 25
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=88.94 E-value=2 Score=31.46 Aligned_cols=51 Identities=16% Similarity=0.268 Sum_probs=37.4
Q ss_pred hhHHHHhHHhhhc-ceEEEEEeCCCccchhhhccccC------cceEEEEeeCceeEE
Q 034174 2 DEVLSSVAETIKN-FAVIYLVDISEVPDFNTMYELYD------PSTVMFFFRNKHIMI 52 (102)
Q Consensus 2 DevL~~~a~~v~~-~a~IY~vDi~~Vpdfn~myeL~d------P~tvMFFfrnkHm~v 52 (102)
..++.+++++.+. =..++.||+++-|+..+-|.+.. -+|+++|-.++.+.=
T Consensus 66 ~p~l~~la~~~~~~~v~f~~VDvd~~~~la~~~~V~~~~~v~~~PT~ilf~~Gk~v~r 123 (152)
T cd02962 66 APVFAELSLKYNNNNLKFGKIDIGRFPNVAEKFRVSTSPLSKQLPTIILFQGGKEVAR 123 (152)
T ss_pred HHHHHHHHHHcccCCeEEEEEECCCCHHHHHHcCceecCCcCCCCEEEEEECCEEEEE
Confidence 3467777777653 26789999999999999999865 347777766665543
No 26
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=88.66 E-value=1 Score=30.03 Aligned_cols=49 Identities=10% Similarity=0.144 Sum_probs=36.4
Q ss_pred ChhHHHHhHHhhhcceEEEEEeCCCccchhhhccccCcceEEEEeeCceeE
Q 034174 1 MDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIM 51 (102)
Q Consensus 1 mDevL~~~a~~v~~~a~IY~vDi~~Vpdfn~myeL~dP~tvMFFfrnkHm~ 51 (102)
|+.+|.++|++..+ ..++-||+++. +..+-|++..=+|+++|.+++-+.
T Consensus 42 l~~~l~~la~~~~~-v~f~~vd~~~~-~l~~~~~i~~~Pt~~~f~~G~~v~ 90 (113)
T cd02957 42 LDSHLEELAAKYPE-TKFVKINAEKA-FLVNYLDIKVLPTLLVYKNGELID 90 (113)
T ss_pred HHHHHHHHHHHCCC-cEEEEEEchhh-HHHHhcCCCcCCEEEEEECCEEEE
Confidence 35677888887665 45789999888 888888886655888887776543
No 27
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=88.23 E-value=1.5 Score=28.13 Aligned_cols=45 Identities=9% Similarity=0.029 Sum_probs=35.4
Q ss_pred hHHHHhHHhhhcceEEEEEeCCCccchhhhccccCcceEEEEeeC
Q 034174 3 EVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRN 47 (102)
Q Consensus 3 evL~~~a~~v~~~a~IY~vDi~~Vpdfn~myeL~dP~tvMFFfrn 47 (102)
..+.++|++.+.-..++.||.++-|+..+-|.+..=+|+++|-++
T Consensus 38 p~~~~~a~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g 82 (101)
T cd03003 38 PTWREFAKEMDGVIRIGAVNCGDDRMLCRSQGVNSYPSLYVFPSG 82 (101)
T ss_pred HHHHHHHHHhcCceEEEEEeCCccHHHHHHcCCCccCEEEEEcCC
Confidence 456778888887788899999999999998999776776666333
No 28
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=87.17 E-value=4.3 Score=30.20 Aligned_cols=70 Identities=19% Similarity=0.227 Sum_probs=44.5
Q ss_pred hHHHHhHHhhhcce-EEEEEeCCCccchhhhccccCcceEEEEeeCceeEEecCCCCCceEEeecCChhHHHHHHHHHhh
Q 034174 3 EVLSSVAETIKNFA-VIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVYR 81 (102)
Q Consensus 3 evL~~~a~~v~~~a-~IY~vDi~~Vpdfn~myeL~dP~tvMFFfrnkHm~vD~GTgnnnKin~~~~~kqefIDiie~iyr 81 (102)
.+|..++++..+.. .++-+|.++-|+..+-|.+.--+|+++|=+++... -++.+ ..++++|...|+.++.
T Consensus 42 p~l~~la~~~~~~~i~~v~vd~~~~~~l~~~~~V~~~Pt~~~f~~g~~~~--------~~~~G-~~~~~~l~~~i~~~~~ 112 (215)
T TIGR02187 42 QLLEELSEVSPKLKLEIYDFDTPEDKEEAEKYGVERVPTTIILEEGKDGG--------IRYTG-IPAGYEFAALIEDIVR 112 (215)
T ss_pred HHHHHHHhhCCCceEEEEecCCcccHHHHHHcCCCccCEEEEEeCCeeeE--------EEEee-cCCHHHHHHHHHHHHH
Confidence 45666666554432 23445555999999999998877987764333211 02222 4566888899998863
No 29
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=86.45 E-value=2.8 Score=27.22 Aligned_cols=56 Identities=20% Similarity=0.202 Sum_probs=37.1
Q ss_pred hHHHHhHHhhhc------ceEEEEEeCCCccchhhhccccCcceEEEEeeCceeEEecCCCCC
Q 034174 3 EVLSSVAETIKN------FAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNN 59 (102)
Q Consensus 3 evL~~~a~~v~~------~a~IY~vDi~~Vpdfn~myeL~dP~tvMFFfrnkHm~vD~GTgnn 59 (102)
..+.++|.++++ -..++-+|.++-++..+-|.+..=+|+.||-.++.. ..-.+|..
T Consensus 38 p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Ptl~~~~~g~~~-~~~~~g~~ 99 (108)
T cd02996 38 PIFEEAAAKIKEEFPDAGKVVWGKVDCDKESDIADRYRINKYPTLKLFRNGMMM-KREYRGQR 99 (108)
T ss_pred HHHHHHHHHHhhccCCCCcEEEEEEECCCCHHHHHhCCCCcCCEEEEEeCCcCc-ceecCCCC
Confidence 345666666542 256788999999999999999765576666444433 35555544
No 30
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=84.54 E-value=6.6 Score=30.58 Aligned_cols=71 Identities=11% Similarity=0.193 Sum_probs=48.9
Q ss_pred HHHHhHHhhhcceEEEEEeCCCccchhhhccccCcceEEEEeeCceeEEecCCCCCceEEeecCChhHHHHHHHHHhhcc
Q 034174 4 VLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVYRGA 83 (102)
Q Consensus 4 vL~~~a~~v~~~a~IY~vDi~~Vpdfn~myeL~dP~tvMFFfrnkHm~vD~GTgnnnKin~~~~~kqefIDiie~iyrgA 83 (102)
.+.+++++.+.-..++.+|.++-|+..+-|.+..=+|+++|-+++. ++.-.| ..+++++.+-++.-|...
T Consensus 73 ~~e~la~~~~~~v~~~~VD~~~~~~l~~~~~I~~~PTl~~f~~G~~--v~~~~G--------~~s~e~L~~fi~~~~~~~ 142 (224)
T PTZ00443 73 AWERLAKALKGQVNVADLDATRALNLAKRFAIKGYPTLLLFDKGKM--YQYEGG--------DRSTEKLAAFALGDFKKA 142 (224)
T ss_pred HHHHHHHHcCCCeEEEEecCcccHHHHHHcCCCcCCEEEEEECCEE--EEeeCC--------CCCHHHHHHHHHHHHHhh
Confidence 4667777777666788899999999999999977667666654443 344333 235577777777766555
Q ss_pred c
Q 034174 84 R 84 (102)
Q Consensus 84 ~ 84 (102)
.
T Consensus 143 ~ 143 (224)
T PTZ00443 143 L 143 (224)
T ss_pred c
Confidence 4
No 31
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=84.05 E-value=4.8 Score=25.20 Aligned_cols=44 Identities=16% Similarity=0.308 Sum_probs=33.0
Q ss_pred hHHHHhHHhhhc---ceEEEEEeCCCccchhhhccccCcceEEEEeeC
Q 034174 3 EVLSSVAETIKN---FAVIYLVDISEVPDFNTMYELYDPSTVMFFFRN 47 (102)
Q Consensus 3 evL~~~a~~v~~---~a~IY~vDi~~Vpdfn~myeL~dP~tvMFFfrn 47 (102)
..+.+++++.+. -..++.+|.++-++..+-|.+..-+|+++| ++
T Consensus 36 p~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~-~~ 82 (102)
T cd03005 36 PTWEQLAKKFNNENPSVKIAKVDCTQHRELCSEFQVRGYPTLLLF-KD 82 (102)
T ss_pred HHHHHHHHHHhccCCcEEEEEEECCCChhhHhhcCCCcCCEEEEE-eC
Confidence 457778887765 567789999998988888998765576555 44
No 32
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=83.72 E-value=5.8 Score=24.88 Aligned_cols=43 Identities=21% Similarity=0.292 Sum_probs=33.2
Q ss_pred hHHHHhHHhhhcceEEEEEeCCCccchhhhccccCcceEEEEe
Q 034174 3 EVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFF 45 (102)
Q Consensus 3 evL~~~a~~v~~~a~IY~vDi~~Vpdfn~myeL~dP~tvMFFf 45 (102)
..|.++++..+.-..++.+|.++-+++.+-|.+..-+|+++|-
T Consensus 32 ~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~ 74 (96)
T cd02956 32 PLLERLAEEYQGQFVLAKVNCDAQPQIAQQFGVQALPTVYLFA 74 (96)
T ss_pred HHHHHHHHHhCCcEEEEEEeccCCHHHHHHcCCCCCCEEEEEe
Confidence 4567777777665678999999999999999997766655553
No 33
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=83.33 E-value=5.3 Score=27.69 Aligned_cols=64 Identities=23% Similarity=0.368 Sum_probs=39.4
Q ss_pred hhHHHHhHHhhhcceEEEEEeCCCc-----------cchhhhcccc----CcceEEEEeeCceeEEecCCCCCceEEeec
Q 034174 2 DEVLSSVAETIKNFAVIYLVDISEV-----------PDFNTMYELY----DPSTVMFFFRNKHIMIDLGTGNNNKINWAL 66 (102)
Q Consensus 2 DevL~~~a~~v~~~a~IY~vDi~~V-----------pdfn~myeL~----dP~tvMFFfrnkHm~vD~GTgnnnKin~~~ 66 (102)
.-+|.+++++ .+ +.||-||+++- ++|-+-|++. -.+|+++|=+++.+..=.| ..
T Consensus 42 ~P~l~~~~~~-~~-~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~i~~~i~~~PT~v~~k~Gk~v~~~~G---------~~ 110 (122)
T TIGR01295 42 SGTLSGVVAQ-TK-APIYYIDSENNGSFEMSSLNDLTAFRSRFGIPTSFMGTPTFVHITDGKQVSVRCG---------SS 110 (122)
T ss_pred hHHHHHHHHh-cC-CcEEEEECCCccCcCcccHHHHHHHHHHcCCcccCCCCCEEEEEeCCeEEEEEeC---------CC
Confidence 3467777776 33 56999999843 3555555542 3788887777776653323 24
Q ss_pred CChhHHHHHH
Q 034174 67 KDKQEFIDIV 76 (102)
Q Consensus 67 ~~kqefIDii 76 (102)
.+++++.++.
T Consensus 111 ~~~~~l~~~~ 120 (122)
T TIGR01295 111 TTAQELQDIA 120 (122)
T ss_pred CCHHHHHHHh
Confidence 4567766654
No 34
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=82.48 E-value=6.2 Score=27.29 Aligned_cols=43 Identities=19% Similarity=0.394 Sum_probs=34.3
Q ss_pred HHHHhHHhhhcceEEEEEeCCCccchhhhccccCcceEEEEeeCc
Q 034174 4 VLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNK 48 (102)
Q Consensus 4 vL~~~a~~v~~~a~IY~vDi~~Vpdfn~myeL~dP~tvMFFfrnk 48 (102)
.+.++|.+-.+ |.++-||++|.+++-+=|++.-=+|.+ |||+.
T Consensus 42 ~~~~La~~y~~-v~Flkvdvde~~~~~~~~~V~~~PTf~-f~k~g 84 (106)
T KOG0907|consen 42 KFEKLAEKYPD-VVFLKVDVDELEEVAKEFNVKAMPTFV-FYKGG 84 (106)
T ss_pred HHHHHHHHCCC-CEEEEEecccCHhHHHhcCceEeeEEE-EEECC
Confidence 46788888899 999999999999999999987666754 44443
No 35
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=81.82 E-value=10 Score=25.18 Aligned_cols=71 Identities=23% Similarity=0.295 Sum_probs=41.1
Q ss_pred HhHHhhhcceEEEEEeCCC-------------ccchhhhccccCcceEEEEeeCc-eeEEecCCCCCceEEeecCChhHH
Q 034174 7 SVAETIKNFAVIYLVDISE-------------VPDFNTMYELYDPSTVMFFFRNK-HIMIDLGTGNNNKINWALKDKQEF 72 (102)
Q Consensus 7 ~~a~~v~~~a~IY~vDi~~-------------Vpdfn~myeL~dP~tvMFFfrnk-Hm~vD~GTgnnnKin~~~~~kqef 72 (102)
.+++.+++-..++.+|+++ .+++...|.+.--+|++|| ++. --.+. ++.+.. ++++|
T Consensus 41 ~~~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~~v~~~Pt~~~~-~~~gg~~~~-------~~~G~~-~~~~~ 111 (125)
T cd02951 41 AVQAYIRAHFVVVYINIDGDKEVTDFDGEALSEKELARKYRVRFTPTVIFL-DPEGGKEIA-------RLPGYL-PPDEF 111 (125)
T ss_pred HHHHHHHhheEEEEEEccCCceeeccCCCCccHHHHHHHcCCccccEEEEE-cCCCCceeE-------EecCCC-CHHHH
Confidence 4444454434467778765 3567777887655564444 321 11111 233333 56899
Q ss_pred HHHHHHHhhccccC
Q 034174 73 IDIVETVYRGARKG 86 (102)
Q Consensus 73 IDiie~iyrgA~kG 86 (102)
..+++.+..++-||
T Consensus 112 ~~~l~~~~~~~~~~ 125 (125)
T cd02951 112 LAYLEYVQEKAYKK 125 (125)
T ss_pred HHHHHHHHhhhhcC
Confidence 99999988877654
No 36
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=81.70 E-value=3.4 Score=27.10 Aligned_cols=52 Identities=15% Similarity=0.291 Sum_probs=34.1
Q ss_pred hHHHHhHHhhhcceEEEEEeCCCc---cchhhhccccCcceEEEEeeCceeEEecCCC
Q 034174 3 EVLSSVAETIKNFAVIYLVDISEV---PDFNTMYELYDPSTVMFFFRNKHIMIDLGTG 57 (102)
Q Consensus 3 evL~~~a~~v~~~a~IY~vDi~~V---pdfn~myeL~dP~tvMFFfrnkHm~vD~GTg 57 (102)
..|.+++++..+ ..++.+|+++- +++.+-|.+.-.+|++|| ++.-+ ++--+|
T Consensus 35 p~l~~la~~~~~-v~~~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~-~~G~~-v~~~~G 89 (103)
T cd02985 35 PTMVKLSRTCND-VVFLLVNGDENDSTMELCRREKIIEVPHFLFY-KDGEK-IHEEEG 89 (103)
T ss_pred HHHHHHHHHCCC-CEEEEEECCCChHHHHHHHHcCCCcCCEEEEE-eCCeE-EEEEeC
Confidence 467777777744 46788998875 478888898776686555 55433 443333
No 37
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=81.69 E-value=5.2 Score=24.92 Aligned_cols=55 Identities=20% Similarity=0.198 Sum_probs=34.5
Q ss_pred hhHHHHhHHhhhcc--eEEEEEeCCCccchhhhccccCcceEEEEeeCceeEEecCCC
Q 034174 2 DEVLSSVAETIKNF--AVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTG 57 (102)
Q Consensus 2 DevL~~~a~~v~~~--a~IY~vDi~~Vpdfn~myeL~dP~tvMFFfrnkHm~vD~GTg 57 (102)
...+.++++.+++. ..++.+|.++- +....+.+..-+|+++|-+++.-.....+|
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~id~~~~-~~~~~~~~~~~Pt~~~~~~~~~~~~~~~~g 93 (104)
T cd02995 37 APIYEELAEKLKGDDNVVIAKMDATAN-DVPSEFVVDGFPTILFFPAGDKSNPIKYEG 93 (104)
T ss_pred hhHHHHHHHHhcCCCCEEEEEEeCcch-hhhhhccCCCCCEEEEEcCCCcCCceEccC
Confidence 45678888888774 45677887764 445556666667777776665333333444
No 38
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=79.00 E-value=3.8 Score=27.04 Aligned_cols=44 Identities=11% Similarity=0.252 Sum_probs=32.1
Q ss_pred hHHHHhHHhhhcceEEEEEeCC-CccchhhhccccCcceEEEEeeCc
Q 034174 3 EVLSSVAETIKNFAVIYLVDIS-EVPDFNTMYELYDPSTVMFFFRNK 48 (102)
Q Consensus 3 evL~~~a~~v~~~a~IY~vDi~-~Vpdfn~myeL~dP~tvMFFfrnk 48 (102)
-.|.+++++.+++. ++.||.+ +-|+..+-|.+..=+|+++| ++.
T Consensus 38 p~l~~la~~~~~~~-~~~vd~~~~~~~l~~~~~V~~~PT~~lf-~~g 82 (100)
T cd02999 38 PHFNALSSMFPQIR-HLAIEESSIKPSLLSRYGVVGFPTILLF-NST 82 (100)
T ss_pred HHHHHHHHHhccCc-eEEEECCCCCHHHHHhcCCeecCEEEEE-cCC
Confidence 35677888777754 5678988 78999999999776676565 443
No 39
>PHA02278 thioredoxin-like protein
Probab=77.90 E-value=4.8 Score=27.33 Aligned_cols=45 Identities=7% Similarity=0.129 Sum_probs=31.0
Q ss_pred hhHHHHhHHhhhcceEEEEEeCCCc----cchhhhccccCcceEEEEee
Q 034174 2 DEVLSSVAETIKNFAVIYLVDISEV----PDFNTMYELYDPSTVMFFFR 46 (102)
Q Consensus 2 DevL~~~a~~v~~~a~IY~vDi~~V----pdfn~myeL~dP~tvMFFfr 46 (102)
..++.+++++...-+.++-+|+++. |+..+-|++..=+|+|||=+
T Consensus 33 ~p~l~~l~~~~~~~~~~~~vdvd~~~~d~~~l~~~~~I~~iPT~i~fk~ 81 (103)
T PHA02278 33 KSVIPMFQESGDIKKPILTLNLDAEDVDREKAVKLFDIMSTPVLIGYKD 81 (103)
T ss_pred HHHHHHHHhhhcCCceEEEEECCccccccHHHHHHCCCccccEEEEEEC
Confidence 3466777765433356899999975 68888899976568666543
No 40
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=77.55 E-value=8.6 Score=26.57 Aligned_cols=46 Identities=4% Similarity=0.022 Sum_probs=34.4
Q ss_pred HHHHhHHhhhcceEEEEEeCCCccchh-hhccccCcceEEEEeeCcee
Q 034174 4 VLSSVAETIKNFAVIYLVDISEVPDFN-TMYELYDPSTVMFFFRNKHI 50 (102)
Q Consensus 4 vL~~~a~~v~~~a~IY~vDi~~Vpdfn-~myeL~dP~tvMFFfrnkHm 50 (102)
.+.++|++.+.-+.+..||.++-++.. +-|.+.-=+|+++| ++.+.
T Consensus 50 ~~~~la~~~~~~v~~~~Vd~d~~~~l~~~~~~I~~~PTl~lf-~~g~~ 96 (113)
T cd03006 50 EFEQVAQKLSDQVLFVAINCWWPQGKCRKQKHFFYFPVIHLY-YRSRG 96 (113)
T ss_pred HHHHHHHHhcCCeEEEEEECCCChHHHHHhcCCcccCEEEEE-ECCcc
Confidence 567788887766788999999998887 57888665687777 44333
No 41
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=77.17 E-value=17 Score=23.45 Aligned_cols=44 Identities=11% Similarity=0.203 Sum_probs=31.7
Q ss_pred HHHHhHHhhhc---ceEEEEEeCCCccchhhhccccCcceEEEEeeCc
Q 034174 4 VLSSVAETIKN---FAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNK 48 (102)
Q Consensus 4 vL~~~a~~v~~---~a~IY~vDi~~Vpdfn~myeL~dP~tvMFFfrnk 48 (102)
.|.++++..+. -..++.+|.++-|+..+-|.+..-+|++|| ++.
T Consensus 36 ~l~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~I~~~Pt~~l~-~~~ 82 (104)
T cd03000 36 VWNEVGAELKSSGSPVRVGKLDATAYSSIASEFGVRGYPTIKLL-KGD 82 (104)
T ss_pred HHHHHHHHHHhcCCcEEEEEEECccCHhHHhhcCCccccEEEEE-cCC
Confidence 46667776643 255678899999999999999776776565 554
No 42
>COG1274 PckA Phosphoenolpyruvate carboxykinase (GTP) [Energy production and conversion]
Probab=76.26 E-value=2.2 Score=38.36 Aligned_cols=37 Identities=32% Similarity=0.518 Sum_probs=30.0
Q ss_pred ecCCCCCceEEeecCChhHHHHHHHHHhhccccCceeEEccCC
Q 034174 53 DLGTGNNNKINWALKDKQEFIDIVETVYRGARKGRGLVIAPKD 95 (102)
Q Consensus 53 D~GTgnnnKin~~~~~kqefIDiie~iyrgA~kGkgiv~sP~d 95 (102)
|-|.-||. .+.||+-+.+..+|||+||||.+-+.|.-
T Consensus 96 ~agPtnNw------~~p~e~~~~m~~l~~G~MrGrtmyVvpf~ 132 (608)
T COG1274 96 DAGPTNNW------MDPQEMRSEMNELFRGCMRGRTMYVVPFC 132 (608)
T ss_pred ccCCccCC------CCHHHHHHHHHHHHHhhhcCceEEEEeee
Confidence 45555554 36799999999999999999999988753
No 43
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=76.01 E-value=17 Score=22.98 Aligned_cols=42 Identities=12% Similarity=0.160 Sum_probs=30.5
Q ss_pred hHHHHhHHhhhcc-eEEEEEeCCCccchhhhccccCcceEEEE
Q 034174 3 EVLSSVAETIKNF-AVIYLVDISEVPDFNTMYELYDPSTVMFF 44 (102)
Q Consensus 3 evL~~~a~~v~~~-a~IY~vDi~~Vpdfn~myeL~dP~tvMFF 44 (102)
.++.+++++.+.. ..++.+|.++-|+..+-|.+.--+|+++|
T Consensus 36 p~~~~l~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~Pt~~~~ 78 (101)
T cd02994 36 PEWEEFADWSDDLGINVAKVDVTQEPGLSGRFFVTALPTIYHA 78 (101)
T ss_pred HHHHHHHHhhccCCeEEEEEEccCCHhHHHHcCCcccCEEEEe
Confidence 3566666665432 56789999999999888999877776554
No 44
>PRK09381 trxA thioredoxin; Provisional
Probab=74.83 E-value=20 Score=23.09 Aligned_cols=49 Identities=16% Similarity=0.356 Sum_probs=34.2
Q ss_pred hHHHHhHHhhhcceEEEEEeCCCccchhhhccccCcceEEEEeeCceeEE
Q 034174 3 EVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMI 52 (102)
Q Consensus 3 evL~~~a~~v~~~a~IY~vDi~~Vpdfn~myeL~dP~tvMFFfrnkHm~v 52 (102)
..|.+++++.+.--.++.+|.+.-|...+-|.+..-+|++|| ++..+.-
T Consensus 41 p~~~~l~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~-~~G~~~~ 89 (109)
T PRK09381 41 PILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLF-KNGEVAA 89 (109)
T ss_pred HHHHHHHHHhCCCcEEEEEECCCChhHHHhCCCCcCCEEEEE-eCCeEEE
Confidence 356667777654456899999999998888888765565444 6655443
No 45
>cd07034 TPP_PYR_PFOR_IOR-alpha_like Pyrimidine (PYR) binding domain of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase alpha subunit (IOR-alpha), and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain, of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit (IOR-alpha), and related proteins, subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. Th
Probab=74.34 E-value=4.7 Score=28.09 Aligned_cols=31 Identities=26% Similarity=0.039 Sum_probs=28.5
Q ss_pred ceEEeecCChhHHHHHHHHHhhccccCceeE
Q 034174 60 NKINWALKDKQEFIDIVETVYRGARKGRGLV 90 (102)
Q Consensus 60 nKin~~~~~kqefIDiie~iyrgA~kGkgiv 90 (102)
.|+.+.+.+.||+-+.++..++-|..||+-|
T Consensus 124 ~~~~~~~~~~~~~~~~~~~A~~~a~~~~~Pv 154 (160)
T cd07034 124 PWPVLAPSSVQEAFDLALEAFELAEKYRLPV 154 (160)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHHHhCCCE
Confidence 7999999999999999999999999998744
No 46
>PTZ00051 thioredoxin; Provisional
Probab=73.60 E-value=14 Score=23.06 Aligned_cols=41 Identities=15% Similarity=0.224 Sum_probs=29.8
Q ss_pred hHHHHhHHhhhcceEEEEEeCCCccchhhhccccCcceEEEE
Q 034174 3 EVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFF 44 (102)
Q Consensus 3 evL~~~a~~v~~~a~IY~vDi~~Vpdfn~myeL~dP~tvMFF 44 (102)
..|.+++.+..+ ..++.+|.++.++..+-|.+..-+|+.+|
T Consensus 38 ~~l~~l~~~~~~-~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~ 78 (98)
T PTZ00051 38 PFYEECSKEYTK-MVFVKVDVDELSEVAEKENITSMPTFKVF 78 (98)
T ss_pred HHHHHHHHHcCC-cEEEEEECcchHHHHHHCCCceeeEEEEE
Confidence 456677776555 35688999999999999999764565555
No 47
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=72.38 E-value=11 Score=24.63 Aligned_cols=44 Identities=11% Similarity=0.206 Sum_probs=30.8
Q ss_pred hHHHHhHHhhh-cceEEEEEeCCCccchhhhccccCcceEEEEeeCc
Q 034174 3 EVLSSVAETIK-NFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNK 48 (102)
Q Consensus 3 evL~~~a~~v~-~~a~IY~vDi~~Vpdfn~myeL~dP~tvMFFfrnk 48 (102)
.+|.+++++.+ +...++.+|++ -|+..+-|.+...+|++|| ++.
T Consensus 37 p~l~~~~~~~~~~~~~~~~vd~d-~~~~~~~~~v~~~Pt~~~~-~~g 81 (102)
T cd02948 37 SLFKKIKNELGDDLLHFATAEAD-TIDTLKRYRGKCEPTFLFY-KNG 81 (102)
T ss_pred HHHHHHHHHcCCCcEEEEEEeCC-CHHHHHHcCCCcCcEEEEE-ECC
Confidence 35666777665 34568889998 6788888888766686665 443
No 48
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=70.70 E-value=15 Score=23.56 Aligned_cols=38 Identities=18% Similarity=0.457 Sum_probs=27.6
Q ss_pred HhHHhhhcceEEEEEeCCC----ccchhhhccccCcceEEEE
Q 034174 7 SVAETIKNFAVIYLVDISE----VPDFNTMYELYDPSTVMFF 44 (102)
Q Consensus 7 ~~a~~v~~~a~IY~vDi~~----Vpdfn~myeL~dP~tvMFF 44 (102)
++++.+++-..++-+|+++ .+++.+-|.+..-+|++||
T Consensus 38 ~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~i~~~Pti~~~ 79 (104)
T cd02953 38 EVQAALKKDVVLLRADWTKNDPEITALLKRFGVFGPPTYLFY 79 (104)
T ss_pred HHHHHHhCCeEEEEEecCCCCHHHHHHHHHcCCCCCCEEEEE
Confidence 5666666456677789877 7888888888765676555
No 49
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=69.51 E-value=22 Score=22.15 Aligned_cols=46 Identities=20% Similarity=0.277 Sum_probs=28.8
Q ss_pred hHHHHhHHhhhc--ceEEEEEeCCC--ccchhhhccccCcceEEEEeeCce
Q 034174 3 EVLSSVAETIKN--FAVIYLVDISE--VPDFNTMYELYDPSTVMFFFRNKH 49 (102)
Q Consensus 3 evL~~~a~~v~~--~a~IY~vDi~~--Vpdfn~myeL~dP~tvMFFfrnkH 49 (102)
..+..++++.++ -..+..+|.++ -+++.+-|.+...+|+ ++|++..
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~Pt~-~~~~~g~ 86 (104)
T cd02997 37 PEFTKAATELKEDGKGVLAAVDCTKPEHDALKEEYNVKGFPTF-KYFENGK 86 (104)
T ss_pred HHHHHHHHHHhhCCceEEEEEECCCCccHHHHHhCCCccccEE-EEEeCCC
Confidence 345566666652 23455578777 8888888888665565 4555544
No 50
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=69.18 E-value=21 Score=23.44 Aligned_cols=43 Identities=16% Similarity=0.231 Sum_probs=28.8
Q ss_pred hHHHHhHHhhhc-ceEEEEEeCCC-ccchh-hhccccCcceEEEEe
Q 034174 3 EVLSSVAETIKN-FAVIYLVDISE-VPDFN-TMYELYDPSTVMFFF 45 (102)
Q Consensus 3 evL~~~a~~v~~-~a~IY~vDi~~-Vpdfn-~myeL~dP~tvMFFf 45 (102)
.++.+++.+.+. =..+..||.++ -.++. +.|.+..-+|++||=
T Consensus 41 ~~~~~la~~~~~~~~~~~~vd~d~~~~~~~~~~~~v~~~Pti~~f~ 86 (109)
T cd02993 41 ASYEELAEKLAGSNVKVAKFNADGEQREFAKEELQLKSFPTILFFP 86 (109)
T ss_pred HHHHHHHHHhccCCeEEEEEECCccchhhHHhhcCCCcCCEEEEEc
Confidence 456777777763 25668889886 45555 368887778865553
No 51
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=69.04 E-value=12 Score=27.63 Aligned_cols=48 Identities=8% Similarity=0.125 Sum_probs=35.1
Q ss_pred ChhHHHHhHHhhhcceEEEEEeCCCccchhhhccccCcceEEEEeeCcee
Q 034174 1 MDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHI 50 (102)
Q Consensus 1 mDevL~~~a~~v~~~a~IY~vDi~~Vpdfn~myeL~dP~tvMFFfrnkHm 50 (102)
|+.+|.++|.+-.+ ..++-||+++. +..+-|.+.-=+|+++|.+++-+
T Consensus 101 m~~~l~~LA~~~~~-vkF~kVd~d~~-~l~~~f~v~~vPTlllyk~G~~v 148 (175)
T cd02987 101 LNSSLLCLAAEYPA-VKFCKIRASAT-GASDEFDTDALPALLVYKGGELI 148 (175)
T ss_pred HHHHHHHHHHHCCC-eEEEEEeccch-hhHHhCCCCCCCEEEEEECCEEE
Confidence 46788889987654 67889999886 66777787655587777766544
No 52
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=66.98 E-value=34 Score=24.12 Aligned_cols=68 Identities=18% Similarity=0.129 Sum_probs=43.2
Q ss_pred HhHHhhhcceEEEEEeCCCccchhhh--------ccccCcceEEEEe-eCceeEEecCCCCCceEEeecCChhHHHHHHH
Q 034174 7 SVAETIKNFAVIYLVDISEVPDFNTM--------YELYDPSTVMFFF-RNKHIMIDLGTGNNNKINWALKDKQEFIDIVE 77 (102)
Q Consensus 7 ~~a~~v~~~a~IY~vDi~~Vpdfn~m--------yeL~dP~tvMFFf-rnkHm~vD~GTgnnnKin~~~~~kqefIDiie 77 (102)
++++.+.+-.+.+-+|.++-|+..+. |...-++|+.|+= .++.+.-+.|.+.-+++.. +.|-++++
T Consensus 42 ~V~~~l~~~fv~VkvD~~~~~~~~~~~~~~~~~~~~~~G~Pt~vfl~~~G~~~~~~~~~~~~~~~~~-----~~~~~~~~ 116 (124)
T cd02955 42 EVAAILNENFVPIKVDREERPDVDKIYMNAAQAMTGQGGWPLNVFLTPDLKPFFGGTYFPPEDRYGR-----PGFKTVLE 116 (124)
T ss_pred HHHHHHhCCEEEEEEeCCcCcHHHHHHHHHHHHhcCCCCCCEEEEECCCCCEEeeeeecCCCCcCCC-----cCHHHHHH
Confidence 45555643345567899998887553 3344567765663 3688888888777777653 55666655
Q ss_pred HH
Q 034174 78 TV 79 (102)
Q Consensus 78 ~i 79 (102)
.|
T Consensus 117 ~~ 118 (124)
T cd02955 117 KI 118 (124)
T ss_pred HH
Confidence 44
No 53
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=66.74 E-value=19 Score=21.29 Aligned_cols=45 Identities=16% Similarity=0.248 Sum_probs=29.7
Q ss_pred hHHHHhHHhhhcceEEEEEeCCCccchhhhccccCcceEEEEeeCcee
Q 034174 3 EVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHI 50 (102)
Q Consensus 3 evL~~~a~~v~~~a~IY~vDi~~Vpdfn~myeL~dP~tvMFFfrnkHm 50 (102)
++|.++++. ..-..+..+|+++-|+..+.|.+..=+| +++.++|+
T Consensus 19 ~~l~~l~~~-~~~i~~~~id~~~~~~l~~~~~i~~vPt--i~i~~~~~ 63 (67)
T cd02973 19 QAANRIAAL-NPNISAEMIDAAEFPDLADEYGVMSVPA--IVINGKVE 63 (67)
T ss_pred HHHHHHHHh-CCceEEEEEEcccCHhHHHHcCCcccCE--EEECCEEE
Confidence 345555543 2235678889999999888888854445 35577765
No 54
>PRK04210 phosphoenolpyruvate carboxykinase; Provisional
Probab=65.85 E-value=6.4 Score=35.64 Aligned_cols=38 Identities=26% Similarity=0.529 Sum_probs=30.1
Q ss_pred EecCCCCCceEEeecCChhHHHHHHHHHhhccccCceeEEccCC
Q 034174 52 IDLGTGNNNKINWALKDKQEFIDIVETVYRGARKGRGLVIAPKD 95 (102)
Q Consensus 52 vD~GTgnnnKin~~~~~kqefIDiie~iyrgA~kGkgiv~sP~d 95 (102)
-|.|.-|| --+.+|+-..+..+|+|+||||.+-+-|.-
T Consensus 88 ~dagp~nn------w~~p~e~~~~l~~lf~G~M~GRTMyVipfs 125 (601)
T PRK04210 88 EDAGPTNN------WMDPAEMRETLKGLFKGCMRGRTMYVVPFS 125 (601)
T ss_pred hhcCCccC------cCCHHHHHHHHHHhcCCccCCCeEEEeeee
Confidence 35555554 246789999999999999999999987753
No 55
>PF11399 DUF3192: Protein of unknown function (DUF3192); InterPro: IPR021534 Some members in this family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=64.32 E-value=5.3 Score=28.56 Aligned_cols=32 Identities=31% Similarity=0.474 Sum_probs=25.3
Q ss_pred ccchhhhccccCcceEEEEeeCceeEEecCCC
Q 034174 26 VPDFNTMYELYDPSTVMFFFRNKHIMIDLGTG 57 (102)
Q Consensus 26 Vpdfn~myeL~dP~tvMFFfrnkHm~vD~GTg 57 (102)
.|||++.|.-.+-.--.+|||-+|++-|-=|-
T Consensus 46 ~pdfsEa~~~~~~~~qVLfYrT~~~~sDG~TT 77 (102)
T PF11399_consen 46 TPDFSEAYRKDDKHVQVLFYRTQHKKSDGITT 77 (102)
T ss_pred CCCchhheeeCCcEEEEEEEEEeeEcCCCCcc
Confidence 69999999886655456889999999886553
No 56
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=63.95 E-value=17 Score=31.49 Aligned_cols=53 Identities=15% Similarity=0.175 Sum_probs=35.7
Q ss_pred hhHHHHhHHhhhc-ceEEEEEeCCCcc-ch-hhhccccCcceEEEEeeCceeEEec
Q 034174 2 DEVLSSVAETIKN-FAVIYLVDISEVP-DF-NTMYELYDPSTVMFFFRNKHIMIDL 54 (102)
Q Consensus 2 DevL~~~a~~v~~-~a~IY~vDi~~Vp-df-n~myeL~dP~tvMFFfrnkHm~vD~ 54 (102)
..++.++|++.+. -..++.+|++.-+ ++ .+-|.+..-+|++||-++++-.+.+
T Consensus 390 ~P~~eelA~~~~~~~v~~~kVdvD~~~~~~~~~~~~I~~~PTii~Fk~g~~~~~~Y 445 (463)
T TIGR00424 390 EASYLELAEKLAGSGVKVAKFRADGDQKEFAKQELQLGSFPTILFFPKHSSRPIKY 445 (463)
T ss_pred HHHHHHHHHHhccCCcEEEEEECCCCccHHHHHHcCCCccceEEEEECCCCCceeC
Confidence 3467788887764 2567889887643 34 3678998888988887665443444
No 57
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=63.30 E-value=29 Score=21.45 Aligned_cols=45 Identities=24% Similarity=0.276 Sum_probs=31.9
Q ss_pred hHHHHhHHhhh--cceEEEEEeCCC-ccchhhhccccCcceEEEEeeC
Q 034174 3 EVLSSVAETIK--NFAVIYLVDISE-VPDFNTMYELYDPSTVMFFFRN 47 (102)
Q Consensus 3 evL~~~a~~v~--~~a~IY~vDi~~-Vpdfn~myeL~dP~tvMFFfrn 47 (102)
..+..++++.+ +-..++-+|.++ -+++.+-|.+..-+|+.+|-.+
T Consensus 38 ~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~i~~~P~~~~~~~~ 85 (105)
T cd02998 38 PEYEKLAAVFANEDDVVIAKVDADEANKDLAKKYGVSGFPTLKFFPKG 85 (105)
T ss_pred hHHHHHHHHhCCCCCEEEEEEECCCcchhhHHhCCCCCcCEEEEEeCC
Confidence 45667777765 345678889989 8999999999776665454333
No 58
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=60.86 E-value=19 Score=25.50 Aligned_cols=43 Identities=19% Similarity=0.283 Sum_probs=31.7
Q ss_pred hhHHHHhHHhhhcceEEEEEeCCCcc-------chhhhcccc-CcceEEEE
Q 034174 2 DEVLSSVAETIKNFAVIYLVDISEVP-------DFNTMYELY-DPSTVMFF 44 (102)
Q Consensus 2 DevL~~~a~~v~~~a~IY~vDi~~Vp-------dfn~myeL~-dP~tvMFF 44 (102)
.-+|.+++++.+.-..++-||+++.| ++-+-|.+. -=+|+|+|
T Consensus 47 ~P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~~~~~I~~~iPT~~~~ 97 (119)
T cd02952 47 EPVVREALKAAPEDCVFIYCDVGDRPYWRDPNNPFRTDPKLTTGVPTLLRW 97 (119)
T ss_pred chhHHHHHHHCCCCCEEEEEEcCCcccccCcchhhHhccCcccCCCEEEEE
Confidence 34678888887744677999998754 788888886 54587777
No 59
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=60.35 E-value=57 Score=22.92 Aligned_cols=72 Identities=8% Similarity=0.055 Sum_probs=44.2
Q ss_pred hHHHHhHHhhhcceEEEEEeCCC--ccchhhhccccCcceEEEEeeCceeEEecCCCCCceEEeecCChhHHHHHHHHHh
Q 034174 3 EVLSSVAETIKNFAVIYLVDISE--VPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVY 80 (102)
Q Consensus 3 evL~~~a~~v~~~a~IY~vDi~~--Vpdfn~myeL~dP~tvMFFfrnkHm~vD~GTgnnnKin~~~~~kqefIDiie~iy 80 (102)
..|.+++++.+.-..++.+|++. .++..+-|.+.--+|++||-++. -.++ ++.+. .++++|.++++.+.
T Consensus 40 p~l~~l~~~~~~~~~~v~v~vd~~~~~~~~~~~~V~~iPt~v~~~~~G-~~v~-------~~~G~-~~~~~l~~~l~~l~ 110 (142)
T cd02950 40 PDVAKLKQKYGDQVNFVMLNVDNPKWLPEIDRYRVDGIPHFVFLDREG-NEEG-------QSIGL-QPKQVLAQNLDALV 110 (142)
T ss_pred HHHHHHHHHhccCeeEEEEEcCCcccHHHHHHcCCCCCCEEEEECCCC-CEEE-------EEeCC-CCHHHHHHHHHHHH
Confidence 45677777765445577778765 35666778887666755553222 1222 23332 35688999999988
Q ss_pred hcc
Q 034174 81 RGA 83 (102)
Q Consensus 81 rgA 83 (102)
.|.
T Consensus 111 ~~~ 113 (142)
T cd02950 111 AGE 113 (142)
T ss_pred cCC
Confidence 765
No 60
>cd05796 Ribosomal_P0_like Ribosomal protein L10 family, P0-like protein subfamily; composed of uncharacterized eukaryotic proteins with similarity to the 60S ribosomal protein P0, including the Saccharomyces cerevisiae protein called mRNA turnover protein 4 (MRT4). MRT4 may be involved in mRNA decay. P0 forms a tight complex with multiple copies of the small acidic protein L12(e). This complex forms a stalk structure on the large subunit of the ribosome. It occupies the L7/L12 stalk of the ribosome. The stalk is known to contain the binding site for elongation factors EF-G and EF-Tu; however, there is disagreement as to whether or not P0 is involved in forming the binding site. The stalk is believed to be associated with GTPase activities in protein synthesis. In a neuroblastoma cell line, P0 has been shown to interact with the SH3 domain of Src and to activate the binding of the Nck1 adaptor protein with skeletal proteins such as the Wiskott-Aldrich Syndrome Protein (WASP) and the WAS
Probab=59.34 E-value=22 Score=25.99 Aligned_cols=79 Identities=16% Similarity=0.412 Sum_probs=56.8
Q ss_pred hHHHHhHHhhhcceEEEEEeCCCccchhhhccc---cCcceEEEEeeCceeEEecCC-C----------------CCceE
Q 034174 3 EVLSSVAETIKNFAVIYLVDISEVPDFNTMYEL---YDPSTVMFFFRNKHIMIDLGT-G----------------NNNKI 62 (102)
Q Consensus 3 evL~~~a~~v~~~a~IY~vDi~~Vpdfn~myeL---~dP~tvMFFfrnkHm~vD~GT-g----------------nnnKi 62 (102)
+++.++.+.++++-.+|+||.+-++. +++=+| .-+. .+++-+|+=|+.-++. + +++-+
T Consensus 5 ~~v~~l~e~l~~y~~v~iv~~~gl~~-~ql~~iR~~lr~~-~~~v~KNtl~~~Al~~~~~~~~~~~~~~L~~~l~G~~~l 82 (163)
T cd05796 5 KLVENIREAVDKYKYIYVFSVDNMRN-NKLKDIRQEWKDS-RFFFGKNKVMQVALGRTPEDEYKPNLHKLSKYLKGQVGL 82 (163)
T ss_pred HHHHHHHHHHHhCCEEEEEEecCCCH-HHHHHHHHHhcCC-EEEEEchHHHHHHHhhCccccccccHHHHHHHhCCCEEE
Confidence 57889999999999999999988764 344444 2234 6899999999987764 1 12334
Q ss_pred EeecCChhHHHHHHHHHhhcc
Q 034174 63 NWALKDKQEFIDIVETVYRGA 83 (102)
Q Consensus 63 n~~~~~kqefIDiie~iyrgA 83 (102)
.|.=+|..+..++++.--+.+
T Consensus 83 ift~~dp~~v~k~l~~~~~~~ 103 (163)
T cd05796 83 LFTNEPPEEVIEYFDSYSEPD 103 (163)
T ss_pred EEECCCHHHHHHHHHHcCCcc
Confidence 555567888888888765554
No 61
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=57.92 E-value=35 Score=19.75 Aligned_cols=47 Identities=21% Similarity=0.347 Sum_probs=34.7
Q ss_pred hHHHHhHHhhhcceEEEEEeCC-Cccchhhhcc--ccCcceEEEEeeCce
Q 034174 3 EVLSSVAETIKNFAVIYLVDIS-EVPDFNTMYE--LYDPSTVMFFFRNKH 49 (102)
Q Consensus 3 evL~~~a~~v~~~a~IY~vDi~-~Vpdfn~mye--L~dP~tvMFFfrnkH 49 (102)
..|.+++++..+-..+..+|.. ..++..+.|. .....++..+.+.+.
T Consensus 52 ~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 101 (127)
T COG0526 52 PLLEELAEEYGGDVEVVAVNVDDENPDLAAEFGVAVRSIPTLLLFKDGKE 101 (127)
T ss_pred hhHHHHHHHhcCCcEEEEEECCCCChHHHHHHhhhhccCCeEEEEeCcch
Confidence 5677788877766778888886 8999999999 766566555554444
No 62
>cd05795 Ribosomal_P0_L10e Ribosomal protein L10 family, P0 and L10e subfamily; composed of eukaryotic 60S ribosomal protein P0 and the archaeal P0 homolog, L10e. P0 or L10e forms a tight complex with multiple copies of the small acidic protein L12(e). This complex forms a stalk structure on the large subunit of the ribosome. The stalk is known to contain the binding site for elongation factors G and Tu (EF-G and EF-Tu, respectively); however, there is disagreement as to whether or not L10 is involved in forming the binding site. The stalk is believed to be associated with GTPase activities in protein synthesis. In a neuroblastoma cell line, L10 has been shown to interact with the SH3 domain of Src and to activate the binding of the Nck1 adaptor protein with skeletal proteins such as the Wiskott-Aldrich Syndrome Protein (WASP) and the WASP-interacting protein (WIP). These eukaryotic and archaeal P0 sequences have an additional C-terminal domain homologous with acidic proteins P1 and P2.
Probab=57.31 E-value=22 Score=26.32 Aligned_cols=79 Identities=19% Similarity=0.215 Sum_probs=56.4
Q ss_pred hHHHHhHHhhhcceEEEEEeCCCccchhhhccc----cCcceEEEEeeCceeEEecCCC---------------CCceEE
Q 034174 3 EVLSSVAETIKNFAVIYLVDISEVPDFNTMYEL----YDPSTVMFFFRNKHIMIDLGTG---------------NNNKIN 63 (102)
Q Consensus 3 evL~~~a~~v~~~a~IY~vDi~~Vpdfn~myeL----~dP~tvMFFfrnkHm~vD~GTg---------------nnnKin 63 (102)
+++.++.+.++++-.+|++|.+-++. +++=+| .+- +.+++.+|+=|+.-+|.- +++-+.
T Consensus 5 ~~v~el~e~l~~~~~v~v~~~~gl~~-~ql~~lR~~lr~~-~~~~v~KNtL~~~Al~~~~~~~~~~~~L~~~l~G~~~li 82 (175)
T cd05795 5 EYVEKLTELLKSYPKVLIVDADNVGS-KQLQKIRRSLRGK-AEILMGKNTLIRRALRNLGDENPELEKLLPYLKGNVGFI 82 (175)
T ss_pred HHHHHHHHHHHhCCEEEEEEecCCCh-HHHHHHHHHhhCC-CEEEEechHHHHHHHHhcccccccHHHHHHHhcCCEEEE
Confidence 57889999999999999999988764 334344 333 568999999999977752 223355
Q ss_pred eecCChhHHHHHHHHHhhcc
Q 034174 64 WALKDKQEFIDIVETVYRGA 83 (102)
Q Consensus 64 ~~~~~kqefIDiie~iyrgA 83 (102)
|.-+|..+...+++.--+.+
T Consensus 83 Ft~~dp~~v~k~l~~~~~~~ 102 (175)
T cd05795 83 FTNGDPFEIRKILEENKVPA 102 (175)
T ss_pred EECCCHHHHHHHHHHcCCcc
Confidence 55567777777777755543
No 63
>cd00819 PEPCK_GTP Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity, this model describes the GTP-dependent group.
Probab=57.30 E-value=11 Score=34.05 Aligned_cols=37 Identities=27% Similarity=0.542 Sum_probs=29.8
Q ss_pred ecCCCCCceEEeecCChhHHHHHHHHHhhccccCceeEEccCC
Q 034174 53 DLGTGNNNKINWALKDKQEFIDIVETVYRGARKGRGLVIAPKD 95 (102)
Q Consensus 53 D~GTgnnnKin~~~~~kqefIDiie~iyrgA~kGkgiv~sP~d 95 (102)
|.|.-|| --+.+|+...+..+|+|.||||.+-+-|.-
T Consensus 75 dagp~nn------w~~p~e~~~~l~~lf~G~M~GRTMYVipfs 111 (579)
T cd00819 75 DAGPTNN------WMDPEEMKAELKELFKGCMRGRTMYVIPFS 111 (579)
T ss_pred ccCCccc------cCCHHHHHHHHHhhCCcccCCCeEEEEeee
Confidence 5555555 247799999999999999999999987753
No 64
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=56.93 E-value=47 Score=24.64 Aligned_cols=62 Identities=10% Similarity=0.163 Sum_probs=39.7
Q ss_pred hHHHHhHHhhhcceEEEEEeCCCccchhhhccccCcceEEEEeeCceeEEecCCCCCceEEeecCChhHHHHHHHH
Q 034174 3 EVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVET 78 (102)
Q Consensus 3 evL~~~a~~v~~~a~IY~vDi~~Vpdfn~myeL~dP~tvMFFfrnkHm~vD~GTgnnnKin~~~~~kqefIDiie~ 78 (102)
.+|.+++.+ ..-..++.+|+++-|+..+-|.+..-+|++|| ++. .. +.+ ..++++|.+.++.
T Consensus 153 ~~l~~l~~~-~~~i~~~~vD~~~~~~~~~~~~V~~vPtl~i~-~~~-~~----------~~G-~~~~~~l~~~l~~ 214 (215)
T TIGR02187 153 LMAHKFALA-NDKILGEMIEANENPDLAEKYGVMSVPKIVIN-KGV-EE----------FVG-AYPEEQFLEYILS 214 (215)
T ss_pred HHHHHHHHh-cCceEEEEEeCCCCHHHHHHhCCccCCEEEEe-cCC-EE----------EEC-CCCHHHHHHHHHh
Confidence 345556654 22345678999999999999999776676654 221 11 333 4456788877763
No 65
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=52.69 E-value=44 Score=26.38 Aligned_cols=47 Identities=19% Similarity=0.227 Sum_probs=34.9
Q ss_pred hHHHHhHHhhhcc---eEEEEEeCCCccchhhhccccCcceEEEEeeCce
Q 034174 3 EVLSSVAETIKNF---AVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKH 49 (102)
Q Consensus 3 evL~~~a~~v~~~---a~IY~vDi~~Vpdfn~myeL~dP~tvMFFfrnkH 49 (102)
..+.++|+.++.. ..+..||.++=++..+-|.+...+|+++|-++++
T Consensus 38 ~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~ 87 (462)
T TIGR01130 38 PEYEKAADELKKKGPPIKLAKVDATEEKDLAQKYGVSGYPTLKIFRNGED 87 (462)
T ss_pred HHHHHHHHHHhhcCCceEEEEEECCCcHHHHHhCCCccccEEEEEeCCcc
Confidence 3456677766654 6778899988888888899977678777765665
No 66
>PLN02309 5'-adenylylsulfate reductase
Probab=52.36 E-value=38 Score=29.32 Aligned_cols=45 Identities=16% Similarity=0.235 Sum_probs=32.9
Q ss_pred ChhHHHHhHHhhhcc-eEEEEEeCC-Cccchhh-hccccCcceEEEEe
Q 034174 1 MDEVLSSVAETIKNF-AVIYLVDIS-EVPDFNT-MYELYDPSTVMFFF 45 (102)
Q Consensus 1 mDevL~~~a~~v~~~-a~IY~vDi~-~Vpdfn~-myeL~dP~tvMFFf 45 (102)
|...+.++|++++.- ..++.+|.+ +-.++.+ .|.+..-+|+.||-
T Consensus 383 m~p~~e~LA~~~~~~~V~f~kVD~d~~~~~la~~~~~I~~~PTil~f~ 430 (457)
T PLN02309 383 MEASYEELAEKLAGSGVKVAKFRADGDQKEFAKQELQLGSFPTILLFP 430 (457)
T ss_pred HHHHHHHHHHHhccCCeEEEEEECCCcchHHHHhhCCCceeeEEEEEe
Confidence 345677888887654 678999998 6566664 68998888975554
No 67
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=49.93 E-value=38 Score=20.26 Aligned_cols=63 Identities=13% Similarity=0.270 Sum_probs=40.2
Q ss_pred hhHHHHhHHhhhcceEEEEEeCCCccchhhhccccCcceEEEEeeCceeEEecCCCCCceEEeecCChhHHHHHHHH
Q 034174 2 DEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVET 78 (102)
Q Consensus 2 DevL~~~a~~v~~~a~IY~vDi~~Vpdfn~myeL~dP~tvMFFfrnkHm~vD~GTgnnnKin~~~~~kqefIDiie~ 78 (102)
...|.+++.+.+.-..+..+|+++-|+-.+-|.+.--+|++ ++++ -++.| ..+++++.+.++.
T Consensus 18 ~~~l~~l~~~~~~~~~~~~vd~~~~~~~~~~~~v~~vPt~~--~~g~-----------~~~~G-~~~~~~l~~~l~~ 80 (82)
T TIGR00411 18 KRVVEEVAKEMGDAVEVEYINVMENPQKAMEYGIMAVPAIV--INGD-----------VEFIG-APTKEELVEAIKK 80 (82)
T ss_pred HHHHHHHHHHhcCceEEEEEeCccCHHHHHHcCCccCCEEE--ECCE-----------EEEec-CCCHHHHHHHHHh
Confidence 35667777666544677899999999888888875444432 3432 13333 3466787777664
No 68
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=49.03 E-value=38 Score=22.73 Aligned_cols=45 Identities=13% Similarity=0.149 Sum_probs=29.1
Q ss_pred hHHHHhHHhhhc---ceEEEEEeC--CCccchhhhccccCcceEEEEeeC
Q 034174 3 EVLSSVAETIKN---FAVIYLVDI--SEVPDFNTMYELYDPSTVMFFFRN 47 (102)
Q Consensus 3 evL~~~a~~v~~---~a~IY~vDi--~~Vpdfn~myeL~dP~tvMFFfrn 47 (102)
..+.+++++.+. ...+..+|. ++.+++.+-|.+..-+|+.+|-++
T Consensus 39 ~~~~~la~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~~~Pt~~lf~~~ 88 (114)
T cd02992 39 PTWKKLARDLRKWRPVVRVAAVDCADEENVALCRDFGVTGYPTLRYFPPF 88 (114)
T ss_pred HHHHHHHHHHHhcCCceEEEEEeccchhhHHHHHhCCCCCCCEEEEECCC
Confidence 457778887764 344566663 457788888888765675555333
No 69
>PF14479 HeLo: Prion-inhibition and propagation; PDB: 2WVQ_A 2WVN_A 2WVO_A.
Probab=48.60 E-value=15 Score=26.85 Aligned_cols=24 Identities=29% Similarity=0.631 Sum_probs=14.7
Q ss_pred CCCCceEEeecCChhHHHHHHHHH
Q 034174 56 TGNNNKINWALKDKQEFIDIVETV 79 (102)
Q Consensus 56 TgnnnKin~~~~~kqefIDiie~i 79 (102)
++-..|+.|++.+|+.|=++|+.+
T Consensus 146 ~~~~~r~~Wai~Dk~~F~~lI~~l 169 (212)
T PF14479_consen 146 TSLPKRARWAIYDKEKFERLIEDL 169 (212)
T ss_dssp S-S-----EEE-SHHHHHHHHHHH
T ss_pred ccccccceeeecchHHHHHHHHHH
Confidence 445578999999999999999875
No 70
>cd07038 TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC), indolepyruvate decarboxylase (IPDC) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites, for many
Probab=45.08 E-value=29 Score=24.93 Aligned_cols=31 Identities=19% Similarity=0.160 Sum_probs=27.8
Q ss_pred ceEEeecCChhHHHHHHHHHhhccccCceeE
Q 034174 60 NKINWALKDKQEFIDIVETVYRGARKGRGLV 90 (102)
Q Consensus 60 nKin~~~~~kqefIDiie~iyrgA~kGkgiv 90 (102)
.|+.+.+++.++....++.+|+.|..|||=|
T Consensus 126 tk~~~~v~~~~~i~~~v~~A~~~a~s~~gPV 156 (162)
T cd07038 126 TCAAARLTDPENAAEEIDRVLRTALRESRPV 156 (162)
T ss_pred eeEEEEeCCHHHHHHHHHHHHHHHHHCCCCE
Confidence 5899999999999999999999999998744
No 71
>PHA02152 hypothetical protein
Probab=44.38 E-value=17 Score=25.77 Aligned_cols=46 Identities=26% Similarity=0.401 Sum_probs=28.9
Q ss_pred cCcceEEEEeeCceeEEecCCCCCceEEeecCChhHHHHHHHHHhhcccc
Q 034174 36 YDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVYRGARK 85 (102)
Q Consensus 36 ~dP~tvMFFfrnkHm~vD~GTgnnnKin~~~~~kqefIDiie~iyrgA~k 85 (102)
..|+|+ -||+.+.=+||.|-|||-=+ +..+.|---.||.++ .||+=
T Consensus 2 sspfsi-~fy~dr~~~v~~~ygnhgwi--sp~~i~~a~~ii~vv-~g~~~ 47 (96)
T PHA02152 2 SSPFTV-EFYNDRNEKVDVRYGNHGWV--SPSNIRYAENIINVV-NGARF 47 (96)
T ss_pred CCceEE-EEeccccccccccccccCcc--ChhHHHHHHHHHHhh-cccch
Confidence 469996 67789899999999998522 244444333444332 35544
No 72
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=41.98 E-value=99 Score=20.30 Aligned_cols=64 Identities=17% Similarity=0.258 Sum_probs=38.6
Q ss_pred HhHHhhhcceEEEEEeCC--CccchhhhccccCcceEEEEeeCceeEEecCCCCC-ceEEeecCChhHHHHHHHHH
Q 034174 7 SVAETIKNFAVIYLVDIS--EVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNN-NKINWALKDKQEFIDIVETV 79 (102)
Q Consensus 7 ~~a~~v~~~a~IY~vDi~--~Vpdfn~myeL~dP~tvMFFfrnkHm~vD~GTgnn-nKin~~~~~kqefIDiie~i 79 (102)
.+.+.+++-.+.+.+|++ +-..|...|.....++++|+ ..+ +|.. ..+.+.. ++++|+..++.+
T Consensus 44 ~v~~~l~~~~v~~~~d~~~~e~~~~~~~~~~~~~P~~~~i-~~~-------~g~~l~~~~G~~-~~~~f~~~L~~~ 110 (114)
T cd02958 44 SVKEFIRENFIFWQCDIDSSEGQRFLQSYKVDKYPHIAII-DPR-------TGEVLKVWSGNI-TPEDLLSQLIEF 110 (114)
T ss_pred HHHHHHHhCEEEEEecCCCccHHHHHHHhCccCCCeEEEE-eCc-------cCcEeEEEcCCC-CHHHHHHHHHHH
Confidence 345556666777888987 45567777777666665554 332 3332 2344444 667888777654
No 73
>COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=41.70 E-value=33 Score=29.95 Aligned_cols=39 Identities=31% Similarity=0.478 Sum_probs=32.5
Q ss_pred CceEEeecCChhHHHHHHHHHhhccccCc-ee--EEccCCcc
Q 034174 59 NNKINWALKDKQEFIDIVETVYRGARKGR-GL--VIAPKDYS 97 (102)
Q Consensus 59 nnKin~~~~~kqefIDiie~iyrgA~kGk-gi--v~sP~dy~ 97 (102)
-.|+++.+.+.+|+-++++..||-|..|| |- |.=|+|..
T Consensus 122 ~tk~~~~v~~~~~ip~~i~~Af~~A~sgrpGpv~i~iP~Dv~ 163 (550)
T COG0028 122 ITKYNFEVRSPEDIPEVVARAFRIALSGRPGPVVVDLPKDVL 163 (550)
T ss_pred hheeEEEeCCHHHHHHHHHHHHHHHhcCCCceEEEEcChhHh
Confidence 35999999999999999999999999888 54 45577643
No 74
>KOG4122 consensus Mitochondrial/chloroplast ribosomal protein L36 [Translation, ribosomal structure and biogenesis]
Probab=40.68 E-value=28 Score=21.17 Aligned_cols=28 Identities=29% Similarity=0.320 Sum_probs=21.5
Q ss_pred HHHHHHhhccccCceeEEccCCcccccc
Q 034174 74 DIVETVYRGARKGRGLVIAPKDYSTKYR 101 (102)
Q Consensus 74 Diie~iyrgA~kGkgiv~sP~dy~~~~~ 101 (102)
...+--|-=-++||+.|+||..+..++|
T Consensus 9 k~C~~Cy~VrRrgR~yViC~~~prHKqr 36 (38)
T KOG4122|consen 9 KRCKDCYLVRRRGRVYVICKTHPRHKQR 36 (38)
T ss_pred HhhhhceEEEEcccEEEEcCCCcchhhh
Confidence 3445555567899999999999888765
No 75
>KOG2013 consensus SMT3/SUMO-activating complex, catalytic component UBA2 [Posttranslational modification, protein turnover, chaperones]
Probab=40.12 E-value=22 Score=32.20 Aligned_cols=39 Identities=31% Similarity=0.587 Sum_probs=28.5
Q ss_pred hHHHHhHHhhhcceEEEEEeCCCccchhhhccccCcceEEEEeeCceeE
Q 034174 3 EVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIM 51 (102)
Q Consensus 3 evL~~~a~~v~~~a~IY~vDi~~Vpdfn~myeL~dP~tvMFFfrnkHm~ 51 (102)
|+|.-+|. +.|-.|.++|.+.+ ||..= .=-||||.+|+.
T Consensus 26 ELLKnLal--~gf~~IhiIDlDTI-------DlSNL-NRQFLFrkkhVg 64 (603)
T KOG2013|consen 26 ELLKNLAL--TGFEEIHIIDLDTI-------DLSNL-NRQFLFRKKHVG 64 (603)
T ss_pred HHHHHHHH--hcCCeeEEEeccce-------eccch-hhhheeehhhcC
Confidence 56666664 68899999999988 56431 224999999983
No 76
>cd07035 TPP_PYR_POX_like Pyrimidine (PYR) binding domain of POX and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) and related protiens subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. For glyoxylate carboligase, which belongs to this subfamily, but lacks this conserved glutamate, the rate of the initial TPP activation step is reduced but the ensuing steps of the enzymic reaction proceed efficiently. The PYR and PP domains have a common fold, but do not share strong sequence conservatio
Probab=39.05 E-value=48 Score=22.77 Aligned_cols=30 Identities=20% Similarity=0.337 Sum_probs=26.3
Q ss_pred ceEEeecCChhHHHHHHHHHhhccccC-cee
Q 034174 60 NKINWALKDKQEFIDIVETVYRGARKG-RGL 89 (102)
Q Consensus 60 nKin~~~~~kqefIDiie~iyrgA~kG-kgi 89 (102)
.|+.+.+++.++.-+.++..++-|..+ +|=
T Consensus 118 ~~~~~~i~~~~~~~~~i~~A~~~a~~~~~gP 148 (155)
T cd07035 118 TKWAYRVTSPEEIPEALRRAFRIALSGRPGP 148 (155)
T ss_pred hceEEEcCCHHHHHHHHHHHHHHhcCCCCCc
Confidence 488889999999999999999999877 453
No 77
>PF05972 APC_15aa: APC 15 residue motif; InterPro: IPR009240 The 15 aa repeat is found in the APC protein family. It is involved in binding beta-catenin [] along with the IPR009223 from INTERPRO repeats. Many human cancer mutations map to the region around these motifs, and may be involved in disrupting their binding of beta-catenin.; GO: 0008013 beta-catenin binding, 0016055 Wnt receptor signaling pathway; PDB: 1JPP_C.
Probab=38.50 E-value=12 Score=19.03 Aligned_cols=10 Identities=60% Similarity=0.982 Sum_probs=4.8
Q ss_pred ccCCcccccc
Q 034174 92 APKDYSTKYR 101 (102)
Q Consensus 92 sP~dy~~~~~ 101 (102)
-|.|||.+|.
T Consensus 4 qP~dyS~kY~ 13 (16)
T PF05972_consen 4 QPIDYSLKYS 13 (16)
T ss_dssp ----CCCCTT
T ss_pred cccchhhhcc
Confidence 3889998874
No 78
>PF06713 bPH_4: Bacterial PH domain; InterPro: IPR009589 This entry is represented by Bacteriophage SP-beta, YolF. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several hypothetical proteins specific to Oceanobacillus and Bacillus species. Members of this family are typically around 130 residues in length. The function of this family is unknown.
Probab=36.73 E-value=73 Score=20.41 Aligned_cols=31 Identities=29% Similarity=0.319 Sum_probs=23.3
Q ss_pred eCceeEEecCCCCCceEEeecCChhHHHHHHHH
Q 034174 46 RNKHIMIDLGTGNNNKINWALKDKQEFIDIVET 78 (102)
Q Consensus 46 rnkHm~vD~GTgnnnKin~~~~~kqefIDiie~ 78 (102)
--+.+.+.+|.++ .+--+..++++||.-+..
T Consensus 42 S~~rl~I~y~~~~--~i~IsP~~~~~FI~~L~k 72 (74)
T PF06713_consen 42 SLDRLEIYYGKYK--SILISPKDKEEFIAELQK 72 (74)
T ss_pred cccEEEEEECCCC--EEEEECCCHHHHHHHHHh
Confidence 4588889988333 377789999999987754
No 79
>PF00821 PEPCK: Phosphoenolpyruvate carboxykinase; InterPro: IPR008209 Phosphoenolpyruvate carboxykinase (PEPCK) catalyses the first committed (rate-limiting) step in hepatic gluconeogenesis, namely the reversible decarboxylation of oxaloacetate to phosphoenolpyruvate (PEP) and carbon dioxide, using either ATP or GTP as a source of phosphate. The ATP-utilising (4.1.1.49 from EC) and GTP-utilising (4.1.1.32 from EC) enzymes form two divergent subfamilies, which have little sequence similarity but which retain conserved active site residues. ATP-utilising PEPCKs are monomers or oligomers of identical subunits found in certain bacteria, yeast, trypanosomatids, and plants, while GTP-utilising PEPCKs are mainly monomers found in animals and some bacteria []. Both require divalent cations for activity, such as magnesium or manganese. One cation interacts with the enzyme at metal binding site 1 to elicit activation, while the second cation interacts at metal binding site 2 to serve as a metal-nucleotide substrate. In bacteria, fungi and plants, PEPCK is involved in the glyoxylate bypass, an alternative to the tricarboxylic acid cycle. PEPCK helps to regulate blood glucose levels. The rate of gluconeogenesis can be controlled through transcriptional regulation of the PEPCK gene by cAMP (the mediator of glucagon and catecholamines), glucocorticoids and insulin. In general, PEPCK expression is induced by glucagon, catecholamines and glucocorticoids during periods of fasting and in response to stress, but is inhibited by (glucose-induced) insulin upon feeding []. With type II diabetes, this regulation system can fail, resulting in increased gluconeogenesis that in turn raises glucose levels []. PEPCK consists of an N-terminal and a catalytic C-terminal domain, with the active site and metal ions located in a cleft between them. Both domains have an alpha/beta topology that is partly similar to one another [, ]. Substrate binding causes PEPCK to undergo a conformational change, which accelerates catalysis by forcing bulk solvent molecules out of the active site []. PCK uses an alpha/beta/alpha motif for nucleotide binding, this motif differing from other kinase domains. GTP-utilising PEPCK has a PEP-binding domain and two kinase motifs to bind GTP and magnesium. This entry represents GTP-utilising phosphoenolpyruvate carboxykinase enzymes.; GO: 0004611 phosphoenolpyruvate carboxykinase activity, 0005525 GTP binding, 0006094 gluconeogenesis; PDB: 2FAH_A 2FAF_A 2QZY_B 2ZCI_D 3MOE_A 3DT7_B 2RKD_A 2RKA_A 2RK8_A 2QF2_B ....
Probab=35.90 E-value=19 Score=32.61 Aligned_cols=28 Identities=25% Similarity=0.501 Sum_probs=24.3
Q ss_pred CChhHHHHHHHHHhhccccCceeEEccC
Q 034174 67 KDKQEFIDIVETVYRGARKGRGLVIAPK 94 (102)
Q Consensus 67 ~~kqefIDiie~iyrgA~kGkgiv~sP~ 94 (102)
-+.+|+..-+...|+|.||||.+.+-|.
T Consensus 83 ~~~~~~~~~l~~~f~G~M~GRtMyVipf 110 (586)
T PF00821_consen 83 MDPEEMKAELDELFPGCMKGRTMYVIPF 110 (586)
T ss_dssp E-HHHHHHHHHCCSTTTTTTSEEEEEEE
T ss_pred CCHHHHHHHHHHhchhhhhhchHHhhHh
Confidence 3678999999999999999999988774
No 80
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=35.16 E-value=1.6e+02 Score=20.66 Aligned_cols=39 Identities=21% Similarity=0.168 Sum_probs=31.5
Q ss_pred hHHHHhHHhhhcc-eEEEEEeCCCccchhhhcccc--CcceE
Q 034174 3 EVLSSVAETIKNF-AVIYLVDISEVPDFNTMYELY--DPSTV 41 (102)
Q Consensus 3 evL~~~a~~v~~~-a~IY~vDi~~Vpdfn~myeL~--dP~tv 41 (102)
+.|.++|++.+.= ..+..+|.++=+.+-+.|.|. +.+++
T Consensus 44 ~~l~~vAk~~kgk~i~Fv~vd~~~~~~~~~~fgl~~~~~P~v 85 (130)
T cd02983 44 EILKSVAEKFKKKPWGWLWTEAGAQLDLEEALNIGGFGYPAM 85 (130)
T ss_pred HHHHHHHHHhcCCcEEEEEEeCcccHHHHHHcCCCccCCCEE
Confidence 5688899998887 788889999988899999993 44453
No 81
>PF01320 Colicin_Pyocin: Colicin immunity protein / pyocin immunity protein; InterPro: IPR023802 Bacterial colicin and pyocin immunity proteins [, ] can bind specifically to the DNase-type colicins and pyocins and inhibit their bactericidal activity. The 1.8-angstrom crystal structure of the ImmE7 protein consists of four antiparallel alpha-helices []. Sequence similarities between colicins E2, A and E1 [] are less striking. The colicin E2 (pyocin) immunity protein does not share similarity with either the colicin E3 or cloacin DF13 [] immunity proteins. Pyocin protects a cell that harbours the plasmid ColE2 encoding colicin E2 against colicin E2; it is thus essential both for autonomous replication and colicin E2 immunity []. This entry represents the structural domain of colicin and pyocin immunity proteins.; GO: 0015643 toxin binding, 0030153 bacteriocin immunity; PDB: 1GXH_A 1GXG_A 1MZ8_C 2ERH_A 1ZNV_C 1AYI_A 1UNK_A 2JBG_A 7CEI_A 1CEI_A ....
Probab=34.25 E-value=32 Score=23.74 Aligned_cols=17 Identities=18% Similarity=0.587 Sum_probs=15.0
Q ss_pred CChhHHHHHHHHHhhcc
Q 034174 67 KDKQEFIDIVETVYRGA 83 (102)
Q Consensus 67 ~~kqefIDiie~iyrgA 83 (102)
-+++|||++|+.|+.+-
T Consensus 10 yTE~EFl~~v~~i~~~~ 26 (85)
T PF01320_consen 10 YTESEFLEFVKEIFNAE 26 (85)
T ss_dssp SBHHHHHHHHHHHHHTC
T ss_pred hhHHHHHHHHHHHHcCC
Confidence 46899999999999875
No 82
>PTZ00062 glutaredoxin; Provisional
Probab=34.25 E-value=83 Score=24.24 Aligned_cols=48 Identities=19% Similarity=0.354 Sum_probs=31.5
Q ss_pred ChhHHHHhHHhhhcceEEEEEeCCCccchhhhccccCcceEEEEeeCceeEEecCCCCC
Q 034174 1 MDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNN 59 (102)
Q Consensus 1 mDevL~~~a~~v~~~a~IY~vDi~~Vpdfn~myeL~dP~tvMFFfrnkHm~vD~GTgnn 59 (102)
|+++|..++++-.+ ..++-||.+ |++.-=+|.+|| ++.- .+|-=.|-|
T Consensus 35 m~~vl~~l~~~~~~-~~F~~V~~d--------~~V~~vPtfv~~-~~g~-~i~r~~G~~ 82 (204)
T PTZ00062 35 LMDVCNALVEDFPS-LEFYVVNLA--------DANNEYGVFEFY-QNSQ-LINSLEGCN 82 (204)
T ss_pred HHHHHHHHHHHCCC-cEEEEEccc--------cCcccceEEEEE-ECCE-EEeeeeCCC
Confidence 57889999998766 667888877 777655665455 4432 355444533
No 83
>KOG3048 consensus Molecular chaperone Prefoldin, subunit 5 [Posttranslational modification, protein turnover, chaperones]
Probab=33.96 E-value=21 Score=27.35 Aligned_cols=20 Identities=35% Similarity=0.772 Sum_probs=14.3
Q ss_pred cCcceEEEEeeCceeEEecCCCC
Q 034174 36 YDPSTVMFFFRNKHIMIDLGTGN 58 (102)
Q Consensus 36 ~dP~tvMFFfrnkHm~vD~GTgn 58 (102)
|-|-.+- -|.|.+||.|||=
T Consensus 74 YVPGkl~---d~~k~lVDIGTGY 93 (153)
T KOG3048|consen 74 YVPGKLS---DNSKFLVDIGTGY 93 (153)
T ss_pred eccceec---cccceeEeccCce
Confidence 4555542 3778899999993
No 84
>cd06155 eu_AANH_C_1 A group of hypothetical eukaryotic proteins, characterized by the presence of an adenine nucleotide alpha hydrolase (AANH)-like domain located N-terminal to two distinctly different YjgF-YER057c-UK114-like domains. This CD contains the first of these domains. The YjgF-YER057c-UK114 protein family is a large family of proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.
Probab=33.87 E-value=8.6 Score=25.60 Aligned_cols=33 Identities=27% Similarity=0.616 Sum_probs=22.9
Q ss_pred hHHHHhHHhhhc--ceEEEEEeCCCccchhhhccc
Q 034174 3 EVLSSVAETIKN--FAVIYLVDISEVPDFNTMYEL 35 (102)
Q Consensus 3 evL~~~a~~v~~--~a~IY~vDi~~Vpdfn~myeL 35 (102)
++|.+.--.+++ ...+|+.|++..+.+|+.|.-
T Consensus 37 ~~L~~aG~~~~dVv~~~iyl~d~~~~~~~n~~~~~ 71 (101)
T cd06155 37 EILQSNGLSLSDILYVTLYLRDMSDFAEVNSVYGT 71 (101)
T ss_pred HHHHHcCCCHHHEEEEEEEECCHHHHHHHHHHHHH
Confidence 344443333444 467899999999999998874
No 85
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=32.48 E-value=80 Score=23.74 Aligned_cols=44 Identities=11% Similarity=0.184 Sum_probs=28.7
Q ss_pred ChhHHHHhHHhhhcceEEEEEeCCCccchhhhccccCcceEEEEeeCc
Q 034174 1 MDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNK 48 (102)
Q Consensus 1 mDevL~~~a~~v~~~a~IY~vDi~~Vpdfn~myeL~dP~tvMFFfrnk 48 (102)
|+.+|.++|.+-.. ..++-+|++.. ..-|.+..=+|+++|.+++
T Consensus 120 m~~~l~~LA~k~~~-vkFvkI~ad~~---~~~~~i~~lPTlliyk~G~ 163 (192)
T cd02988 120 LNQHLSELARKFPD-TKFVKIISTQC---IPNYPDKNLPTILVYRNGD 163 (192)
T ss_pred HHHHHHHHHHHCCC-CEEEEEEhHHh---HhhCCCCCCCEEEEEECCE
Confidence 56788899987654 56677777653 3556665445766665554
No 86
>PTZ00135 60S acidic ribosomal protein P0; Provisional
Probab=31.60 E-value=92 Score=25.54 Aligned_cols=91 Identities=20% Similarity=0.228 Sum_probs=62.1
Q ss_pred hHHHHhHHhhhcceEEEEEeCCCccchhhhcccc---CcceEEEEeeCceeEEecCCC---------------CCceEEe
Q 034174 3 EVLSSVAETIKNFAVIYLVDISEVPDFNTMYELY---DPSTVMFFFRNKHIMIDLGTG---------------NNNKINW 64 (102)
Q Consensus 3 evL~~~a~~v~~~a~IY~vDi~~Vpdfn~myeL~---dP~tvMFFfrnkHm~vD~GTg---------------nnnKin~ 64 (102)
+...++.+.++++-.||+||.+-|+. ++|=+|. -+-+.+++-+|+=|+.=+|.- +|+-+.|
T Consensus 12 ~~v~~l~e~l~~y~~v~vv~~~nv~s-~ql~~iR~~LR~~a~~~vgKNTL~r~AL~~~~~~~~~l~~L~~~LkG~~gliF 90 (310)
T PTZ00135 12 AYFEKLYELLEKYKKILIVSVDNVGS-KQMQDIRRSLRGKAELLMGKNTLIRKALKQRLEELPELEKLLPHVKGNVGFVF 90 (310)
T ss_pred HHHHHHHHHHHhCCEEEEEEcCCCCH-HHHHHHHHHHhcCCEEEEEehHHHHHHHhhCcccccChHHHHhhccCCEEEEE
Confidence 56788999999999999999988764 5555552 123457889999998866541 1233445
Q ss_pred ecCChhHHHHHHHHHhhccccCceeEEccCC
Q 034174 65 ALKDKQEFIDIVETVYRGARKGRGLVIAPKD 95 (102)
Q Consensus 65 ~~~~kqefIDiie~iyrgA~kGkgiv~sP~d 95 (102)
.-+|..+..++++.--+.+ --|+=.++|.|
T Consensus 91 Tn~dp~ev~k~l~~~k~~~-~AKaG~iAp~d 120 (310)
T PTZ00135 91 TKDDLFEVKPVILENKVPA-PARAGVIAPID 120 (310)
T ss_pred ECCCHHHHHHHHHHcCCcc-ccccCCCCCce
Confidence 5567788888887765543 34444556655
No 87
>PRK00831 rpmJ 50S ribosomal protein L36; Validated
Probab=29.85 E-value=38 Score=20.78 Aligned_cols=18 Identities=50% Similarity=0.519 Sum_probs=15.7
Q ss_pred ccCceeEEccCCcccccc
Q 034174 84 RKGRGLVIAPKDYSTKYR 101 (102)
Q Consensus 84 ~kGkgiv~sP~dy~~~~~ 101 (102)
++|+..|+++.++..++|
T Consensus 22 R~grv~Vick~nprhKqR 39 (41)
T PRK00831 22 RKGRVYVINKKNPRFKAR 39 (41)
T ss_pred eCCEEEEEcCCCCccccc
Confidence 689999999999888765
No 88
>PF07978 NIPSNAP: NIPSNAP ; InterPro: IPR012577 Members of this family include many hypothetical proteins. It also includes members of the NIPSNAP family, which have putative roles in vesicular transport []. This domain is often found in duplicate.; PDB: 1VQY_D 2AP6_H.
Probab=29.22 E-value=1.5e+02 Score=18.66 Aligned_cols=60 Identities=15% Similarity=0.290 Sum_probs=43.8
Q ss_pred EEEEEeCCCccchhhhccc-----c--CcceEEEEeeCceeEEecCCCCCceEEeecCChhHHHHHHHHHhh
Q 034174 17 VIYLVDISEVPDFNTMYEL-----Y--DPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVYR 81 (102)
Q Consensus 17 ~IY~vDi~~Vpdfn~myeL-----~--dP~tvMFFfrnkHm~vD~GTgnnnKin~~~~~kqefIDiie~iyr 81 (102)
.+|.+.-.++++|.+.|+= . -.+.++-+|.. +.|..|.--..|.++|-++....-+++++
T Consensus 4 r~Y~l~pg~~~~~~~~~~~~~~~~~~~~g~~lvG~~~~-----~~G~~~~~~~l~~y~~~~~r~~~~~a~~~ 70 (102)
T PF07978_consen 4 RTYTLKPGKMDEFLELFEEALIPRQKKHGGKLVGYWVT-----EVGPLNQVVHLWSYDDLAAREEAREALYA 70 (102)
T ss_dssp EEEEESTT-HHHHHHHHHHCCHHHHHHHH-EEEEEEEE-----EESBSSEEEEEEEES-HHHHHHHHHHHHH
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHHHhCCceeEEEEe-----ccCCCceEEEEEEcCCHHHHHHHHHHHHc
Confidence 3688888888888777763 1 25778888854 78886666688899999999999888874
No 89
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=29.01 E-value=1.6e+02 Score=25.68 Aligned_cols=64 Identities=16% Similarity=0.269 Sum_probs=39.1
Q ss_pred HhHHhhhcceEEEEEeCCC----ccchhhhccccCcceEEEEeeC-ceeEEecCCCCCceEEeecCChhHHHHHHHHH
Q 034174 7 SVAETIKNFAVIYLVDISE----VPDFNTMYELYDPSTVMFFFRN-KHIMIDLGTGNNNKINWALKDKQEFIDIVETV 79 (102)
Q Consensus 7 ~~a~~v~~~a~IY~vDi~~----Vpdfn~myeL~dP~tvMFFfrn-kHm~vD~GTgnnnKin~~~~~kqefIDiie~i 79 (102)
+++++++++ +++-+|+++ .+++-+-|.+.-++|++||=++ +-+.. .++.+. .++++|.+.++.+
T Consensus 501 ~v~~~l~~~-~~v~vDvt~~~~~~~~l~~~~~v~g~Pt~~~~~~~G~~i~~-------~r~~G~-~~~~~f~~~L~~~ 569 (571)
T PRK00293 501 QVQQALADT-VLLQADVTANNAEDVALLKHYNVLGLPTILFFDAQGQEIPD-------ARVTGF-MDAAAFAAHLRQL 569 (571)
T ss_pred HHHHHhcCC-EEEEEECCCCChhhHHHHHHcCCCCCCEEEEECCCCCCccc-------ccccCC-CCHHHHHHHHHHh
Confidence 455666775 456789874 4667778889888886554211 22111 223333 3678999888763
No 90
>PTZ00102 disulphide isomerase; Provisional
Probab=26.75 E-value=2.3e+02 Score=22.87 Aligned_cols=46 Identities=20% Similarity=0.296 Sum_probs=33.2
Q ss_pred HHHhHHhhhc---ceEEEEEeCCCccchhhhccccCcceEEEEeeCcee
Q 034174 5 LSSVAETIKN---FAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHI 50 (102)
Q Consensus 5 L~~~a~~v~~---~a~IY~vDi~~Vpdfn~myeL~dP~tvMFFfrnkHm 50 (102)
+.++|+.+++ -..++.||.++-++..+-|.+.-.+|+++|-+++.+
T Consensus 71 ~~~~a~~~~~~~~~i~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~~ 119 (477)
T PTZ00102 71 YKKAAKMLKEKKSEIVLASVDATEEMELAQEFGVRGYPTIKFFNKGNPV 119 (477)
T ss_pred HHHHHHHHHhcCCcEEEEEEECCCCHHHHHhcCCCcccEEEEEECCceE
Confidence 4456665543 367888999999999999999888887666555544
No 91
>PF08800 VirE_N: VirE N-terminal domain; InterPro: IPR014907 This domain is associated with the N terminus of Virulence E proteins. The function of the domain is unknown.
Probab=26.62 E-value=1.3e+02 Score=21.45 Aligned_cols=52 Identities=23% Similarity=0.379 Sum_probs=34.7
Q ss_pred HHhhhcceEEEEEeCCCcc--chhhhccc--cCcceEEEEeeCceeEEecCCCCCceEEeecCC
Q 034174 9 AETIKNFAVIYLVDISEVP--DFNTMYEL--YDPSTVMFFFRNKHIMIDLGTGNNNKINWALKD 68 (102)
Q Consensus 9 a~~v~~~a~IY~vDi~~Vp--dfn~myeL--~dP~tvMFFfrnkHm~vD~GTgnnnKin~~~~~ 68 (102)
+..+..+--+.++||+-++ +...+-++ .||.|++.|- .-+|+--|+...+..
T Consensus 24 ~~~l~~~sglv~lDiD~l~~ee~~~~r~~l~~~p~t~~~f~--------SpSG~GvKi~v~~~~ 79 (136)
T PF08800_consen 24 ADNLKAYSGLVVLDIDHLDPEEAEELRQLLFEDPYTLAAFV--------SPSGRGVKIIVPFDY 79 (136)
T ss_pred hhhhhhCCCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEE--------cCCCCeEEEEEEecC
Confidence 3456777888999999997 33344443 6899977775 334555777666543
No 92
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=26.43 E-value=1.8e+02 Score=19.77 Aligned_cols=39 Identities=23% Similarity=0.391 Sum_probs=31.3
Q ss_pred hHHHHhHHhhhcceEEEEEeCCCccchhhhcccc--C-cceE
Q 034174 3 EVLSSVAETIKNFAVIYLVDISEVPDFNTMYELY--D-PSTV 41 (102)
Q Consensus 3 evL~~~a~~v~~~a~IY~vDi~~Vpdfn~myeL~--d-P~tv 41 (102)
+.|.++|.+.++=..+..+|.+..++..+.|.+. + |.-+
T Consensus 115 ~~l~~~a~~~~~~~~f~~~d~~~~~~~~~~~~i~~~~~P~~v 156 (184)
T PF13848_consen 115 KELQDIAKKFKGKINFVYVDADDFPRLLKYFGIDEDDLPALV 156 (184)
T ss_dssp HHHHHHHHCTTTTSEEEEEETTTTHHHHHHTTTTTSSSSEEE
T ss_pred HHHHHHHHhcCCeEEEEEeehHHhHHHHHHcCCCCccCCEEE
Confidence 3567888888887888999999999999999985 3 5553
No 93
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=25.38 E-value=1.2e+02 Score=20.59 Aligned_cols=28 Identities=7% Similarity=0.248 Sum_probs=15.8
Q ss_pred EEEEEeCCCccc-hhhhccccC--cceEEEE
Q 034174 17 VIYLVDISEVPD-FNTMYELYD--PSTVMFF 44 (102)
Q Consensus 17 ~IY~vDi~~Vpd-fn~myeL~d--P~tvMFF 44 (102)
.++.||+++-++ ..+.|.+.- .+|++||
T Consensus 53 ~fv~v~vd~~~~~~~~~~~~~g~~vPt~~f~ 83 (117)
T cd02959 53 NFVMVNLEDDEEPKDEEFSPDGGYIPRILFL 83 (117)
T ss_pred cEEEEEecCCCCchhhhcccCCCccceEEEE
Confidence 466778776542 446666632 5564444
No 94
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=25.17 E-value=1.2e+02 Score=24.57 Aligned_cols=43 Identities=23% Similarity=0.230 Sum_probs=36.6
Q ss_pred HHHhHHhhhcceEEEEEeCCCccchhhhccccCcceEEEEeeC
Q 034174 5 LSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRN 47 (102)
Q Consensus 5 L~~~a~~v~~~a~IY~vDi~~Vpdfn~myeL~dP~tvMFFfrn 47 (102)
..+++..++.-..+-.||.++-++..+.|++.-.+|+.+|..+
T Consensus 69 ~~~~~~~l~~~~~~~~vd~~~~~~~~~~y~i~gfPtl~~f~~~ 111 (383)
T KOG0191|consen 69 YKKLAKALKGKVKIGAVDCDEHKDLCEKYGIQGFPTLKVFRPG 111 (383)
T ss_pred HHHHHHHhcCceEEEEeCchhhHHHHHhcCCccCcEEEEEcCC
Confidence 3467777777778899999999999999999999998777766
No 95
>cd06150 YjgF_YER057c_UK114_like_2 This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.
Probab=23.83 E-value=17 Score=24.16 Aligned_cols=32 Identities=19% Similarity=0.454 Sum_probs=21.7
Q ss_pred hHHHHhHHhhhc--ceEEEEEeCCCccchhhhcc
Q 034174 3 EVLSSVAETIKN--FAVIYLVDISEVPDFNTMYE 34 (102)
Q Consensus 3 evL~~~a~~v~~--~a~IY~vDi~~Vpdfn~mye 34 (102)
++|.+.--.+++ ...||+.|++..+.+|+.|.
T Consensus 40 ~~L~~~G~~~~dvvk~~vyl~d~~~~~~~~~~~~ 73 (105)
T cd06150 40 ALLAEAGSDKSRILSATIWLADMADFAAMNAVWD 73 (105)
T ss_pred HHHHHcCCCHHHEEEEEEEEccHHHHHHHHHHHH
Confidence 334433333444 35789999999999998876
No 96
>cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of differ
Probab=23.67 E-value=1e+02 Score=22.23 Aligned_cols=31 Identities=16% Similarity=0.287 Sum_probs=26.8
Q ss_pred ceEEeecCChhHHHHHHHHHhhccccCceeE
Q 034174 60 NKINWALKDKQEFIDIVETVYRGARKGRGLV 90 (102)
Q Consensus 60 nKin~~~~~kqefIDiie~iyrgA~kGkgiv 90 (102)
.|+...+++.+++-..++..+|-|+.++|=|
T Consensus 122 tk~~~~v~~~~~~~~~i~~A~~~a~~~~GPV 152 (164)
T cd07039 122 AVYNETVTSPEQLPELLDRAIRTAIAKRGVA 152 (164)
T ss_pred hcEEEEeCCHHHHHHHHHHHHHHHhcCCCCE
Confidence 4899999999999999999999987777643
No 97
>cd07037 TPP_PYR_MenD Pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate synthase (MenD) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate (SEPHCHC) synthase (MenD) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dim
Probab=22.39 E-value=96 Score=22.69 Aligned_cols=30 Identities=7% Similarity=0.091 Sum_probs=26.3
Q ss_pred CCceEEeecCChhH------HHHHHHHHhhccccCc
Q 034174 58 NNNKINWALKDKQE------FIDIVETVYRGARKGR 87 (102)
Q Consensus 58 nnnKin~~~~~kqe------fIDiie~iyrgA~kGk 87 (102)
+-.|+.+.+++.++ +...++..+|.|+.|+
T Consensus 117 ~vtk~~~~v~~~~~~~~~~~~~~~i~~A~~~A~~~~ 152 (162)
T cd07037 117 DYVRWSVDLPPPEDDDDLWYLLRLANRAVLEALSAP 152 (162)
T ss_pred ceeeEEEecCCcccchhHHHHHHHHHHHHHHHhCCC
Confidence 34799999999999 8999999999998876
No 98
>PRK04019 rplP0 acidic ribosomal protein P0; Validated
Probab=22.36 E-value=76 Score=25.90 Aligned_cols=77 Identities=18% Similarity=0.295 Sum_probs=53.6
Q ss_pred hHHHHhHHhhhcceEEEEEeCCCccchhhhccc----cCcceEEEEeeCceeEEecCC-C------------CCceEEee
Q 034174 3 EVLSSVAETIKNFAVIYLVDISEVPDFNTMYEL----YDPSTVMFFFRNKHIMIDLGT-G------------NNNKINWA 65 (102)
Q Consensus 3 evL~~~a~~v~~~a~IY~vDi~~Vpdfn~myeL----~dP~tvMFFfrnkHm~vD~GT-g------------nnnKin~~ 65 (102)
+++.++.+.++++-.+|+||.+.+|. +++-+| .+- +.+++.+|+-|+.=++. | +++-+.|.
T Consensus 10 ~~v~el~~~l~~~~~v~iv~~~gl~~-~ql~~lR~~lr~~-~~~~v~KNtL~~~Al~~~~~~~~~~L~~~l~G~~alift 87 (330)
T PRK04019 10 EEVEELKELIKSYPVVGIVDLEGIPA-RQLQEIRRKLRGK-AELKVSKNTLIKRALEEAGEEDLEKLEDYLEGQVALIFT 87 (330)
T ss_pred HHHHHHHHHHHhCCEEEEEEcCCCCH-HHHHHHHHHHHcC-CEEEEEehHHHHHHHHhcCcccHHHHHhhccCCEEEEEE
Confidence 56788999999999999999988765 344444 333 56899999999885554 2 12334555
Q ss_pred cCChhHHHHHHHHHhh
Q 034174 66 LKDKQEFIDIVETVYR 81 (102)
Q Consensus 66 ~~~kqefIDiie~iyr 81 (102)
-+|.-+...+++..-+
T Consensus 88 ~~dp~~v~k~l~~~~~ 103 (330)
T PRK04019 88 NMNPFKLYKLLEKSKT 103 (330)
T ss_pred CCCHHHHHHHHHHcCC
Confidence 5666777777766443
No 99
>COG0836 {ManC} Mannose-1-phosphate guanylyltransferase [Cell envelope biogenesis, outer membrane]
Probab=22.00 E-value=97 Score=26.36 Aligned_cols=36 Identities=33% Similarity=0.692 Sum_probs=31.0
Q ss_pred cCChhHHHHHHHHHhhccccCceeE---EccCCccccccC
Q 034174 66 LKDKQEFIDIVETVYRGARKGRGLV---IAPKDYSTKYRY 102 (102)
Q Consensus 66 ~~~kqefIDiie~iyrgA~kGkgiv---~sP~dy~~~~~~ 102 (102)
+.|.+.|.+-|...-.-|.+| .|| +.|--..|-|.|
T Consensus 118 I~d~~af~~av~~A~~~A~~g-~lVTfGI~Pt~PeTGYGY 156 (333)
T COG0836 118 IADEEAFLNAVKKAEKAAEEG-GIVTFGIPPTRPETGYGY 156 (333)
T ss_pred eccHHHHHHHHHHHHHHHHcC-CEEEEecCCCCCccCcce
Confidence 678899999999999999999 666 578888888876
No 100
>TIGR00004 endoribonuclease L-PSP, putative. This protein was described initially as an inhibitor of protein synthesis intiation but is now viewed as an endoribonuclease active on single-stranded mRNA. The cleavage of mRNA is responsible for the inhibition of protein synthesis. A role in purine regulation has also been suggested.
Probab=21.86 E-value=26 Score=23.73 Aligned_cols=20 Identities=20% Similarity=0.602 Sum_probs=16.6
Q ss_pred ceEEEEEeCCCccchhhhcc
Q 034174 15 FAVIYLVDISEVPDFNTMYE 34 (102)
Q Consensus 15 ~a~IY~vDi~~Vpdfn~mye 34 (102)
-..+|+.|++..+.+|+.|.
T Consensus 73 ~~~vyv~~~~~~~~~~~~~~ 92 (124)
T TIGR00004 73 KTTVFLTDLNDFAEVNEVYG 92 (124)
T ss_pred EEEEEEeChHHHHHHHHHHH
Confidence 46789999998888888776
No 101
>TIGR01866 cas_Csn2 CRISPR-associated protein, Csn2 family. CRISPR loci appear to be mobile elements with a wide host range. This model represents a protein found only in CRISPR-containing species, near other CRISPR-associated proteins (cas), as part of the NMENI subtype of CRISPR/Cas loci. The species range so far for this subtype is animal pathogens and commensals only. This protein is present in some but not all NMENI CRISPR/Cas loci.
Probab=21.04 E-value=1.3e+02 Score=23.67 Aligned_cols=32 Identities=25% Similarity=0.301 Sum_probs=26.0
Q ss_pred EEeecCChhHHHHHHHHHhhccccCceeEEcc
Q 034174 62 INWALKDKQEFIDIVETVYRGARKGRGLVIAP 93 (102)
Q Consensus 62 in~~~~~kqefIDiie~iyrgA~kGkgiv~sP 93 (102)
-.|.++|+..|-++|...|+|...+-|..++-
T Consensus 18 tvl~ien~~vf~~~V~~l~~~~~~~d~~~~l~ 49 (216)
T TIGR01866 18 TILVLENKCVFSKIVQYLYQYESGEDGELILS 49 (216)
T ss_pred EEEEEcCHHHHHHHHHHHHccccCCccceeec
Confidence 45789999999999999999996666665543
No 102
>TIGR01504 glyox_carbo_lig glyoxylate carboligase. Glyoxylate carboligase, also called tartronate-semialdehyde synthase, releases CO2 while synthesizing a single molecule of tartronate semialdehyde from two molecules of glyoxylate. It is a thiamine pyrophosphate-dependent enzyme, closely related in sequence to the large subunit of acetolactate synthase. In the D-glycerate pathway, part of allantoin degradation in the Enterobacteriaceae, tartronate semialdehyde is converted to D-glycerate and then 3-phosphoglycerate, a product of glycolysis and entry point in the general metabolism.
Probab=21.03 E-value=1.2e+02 Score=26.22 Aligned_cols=38 Identities=18% Similarity=0.324 Sum_probs=30.2
Q ss_pred CceEEeecCChhHHHHHHHHHhhccccCc-ee--EEccCCc
Q 034174 59 NNKINWALKDKQEFIDIVETVYRGARKGR-GL--VIAPKDY 96 (102)
Q Consensus 59 nnKin~~~~~kqefIDiie~iyrgA~kGk-gi--v~sP~dy 96 (102)
-+|+.+.+.+.+++.++|+.+++-|+.|| |= +.=|.|-
T Consensus 125 vtk~~~~v~~~~~i~~~i~~A~~~A~~~~~GPV~l~iP~Dv 165 (588)
T TIGR01504 125 VSKMAVTVREAALVPRVLQQAFHLMRSGRPGPVLIDLPFDV 165 (588)
T ss_pred hceEEEEcCCHHHHHHHHHHHHHHHccCCCCeEEEEeCcch
Confidence 47999999999999999999999887775 43 4455553
No 103
>PTZ00102 disulphide isomerase; Provisional
Probab=21.00 E-value=2.9e+02 Score=22.25 Aligned_cols=69 Identities=12% Similarity=0.096 Sum_probs=41.4
Q ss_pred hHHHHhHHhhhc--ceEEEEEeCCCccchhhhccccCcceEEEEeeCceeEEecCCCCCceEEeecCChhHHHHHHHHHh
Q 034174 3 EVLSSVAETIKN--FAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVY 80 (102)
Q Consensus 3 evL~~~a~~v~~--~a~IY~vDi~~Vpdfn~myeL~dP~tvMFFfrnkHm~vD~GTgnnnKin~~~~~kqefIDiie~iy 80 (102)
.++.++|.+.+. -..++.+|.++-+...+-|.+.--+|++||=+++.+.+ .+.+ -.+.+++.+.|+...
T Consensus 395 p~~~~~a~~~~~~~~v~~~~id~~~~~~~~~~~~v~~~Pt~~~~~~~~~~~~--------~~~G-~~~~~~l~~~i~~~~ 465 (477)
T PTZ00102 395 PVYNELGEKYKDNDSIIVAKMNGTANETPLEEFSWSAFPTILFVKAGERTPI--------PYEG-ERTVEGFKEFVNKHA 465 (477)
T ss_pred HHHHHHHHHhccCCcEEEEEEECCCCccchhcCCCcccCeEEEEECCCccee--------EecC-cCCHHHHHHHHHHcC
Confidence 456777776654 46678889887766666777766677544433332211 1222 235577777777644
No 104
>PLN02573 pyruvate decarboxylase
Probab=20.48 E-value=98 Score=26.72 Aligned_cols=31 Identities=13% Similarity=0.132 Sum_probs=28.0
Q ss_pred ceEEeecCChhHHHHHHHHHhhccccCceeE
Q 034174 60 NKINWALKDKQEFIDIVETVYRGARKGRGLV 90 (102)
Q Consensus 60 nKin~~~~~kqefIDiie~iyrgA~kGkgiv 90 (102)
+|+.+.+.+.++..+.++.++|.|+.|+|=|
T Consensus 145 tk~s~~v~~~~~~~~~l~~A~~~A~~~~gPV 175 (578)
T PLN02573 145 TCYQAVINNLEDAHELIDTAISTALKESKPV 175 (578)
T ss_pred EEEEEEeCCHHHHHHHHHHHHHHHHhcCCCE
Confidence 6899999999999999999999998888744
No 105
>PF00444 Ribosomal_L36: Ribosomal protein L36; InterPro: IPR000473 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein L36 is the smallest protein from the large subunit of the prokaryotic ribosome. It belongs to a family of ribosomal proteins which, on the basis of sequence similarities [] can be grouped into: bacterial L36; algal and plant chloroplast L36; Cyanelle L36. L36 is a small basic and cysteine-rich protein of 37 amino-acid residues.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3BBO_6 2HGU_8 2HGJ_8 1DGZ_A 1DFE_A 2HGQ_8 1VSP_b 1VSA_b 3PIP_4 1VOU_6 ....
Probab=20.44 E-value=67 Score=19.21 Aligned_cols=18 Identities=50% Similarity=0.558 Sum_probs=15.3
Q ss_pred ccCceeEEccCCcccccc
Q 034174 84 RKGRGLVIAPKDYSTKYR 101 (102)
Q Consensus 84 ~kGkgiv~sP~dy~~~~~ 101 (102)
++|+..|+|+.++..++|
T Consensus 19 R~gr~~Vick~nprhKqr 36 (38)
T PF00444_consen 19 RKGRLYVICKKNPRHKQR 36 (38)
T ss_dssp ETTEEEEEESSSGGGCEE
T ss_pred ECCEEEEECCCCCchhcc
Confidence 689999999999887764
No 106
>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase. Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur.
Probab=20.26 E-value=1.2e+02 Score=25.99 Aligned_cols=37 Identities=14% Similarity=0.282 Sum_probs=30.7
Q ss_pred CceEEeecCChhHHHHHHHHHhhccccCceeE--EccCC
Q 034174 59 NNKINWALKDKQEFIDIVETVYRGARKGRGLV--IAPKD 95 (102)
Q Consensus 59 nnKin~~~~~kqefIDiie~iyrgA~kGkgiv--~sP~d 95 (102)
-+|+.+.+.+.+++-.+++.++|-|+.|||=| .=|.|
T Consensus 122 vtk~~~~v~~~~~~~~~i~~A~~~A~~~~GPV~l~iP~D 160 (579)
T TIGR03457 122 FTKYQGHVRHPSRMAEVLNRCFERAWREMGPAQLNIPRD 160 (579)
T ss_pred ceeEEEecCCHHHHHHHHHHHHHHHhcCCCCEEEEeCcc
Confidence 36999999999999999999999998888755 33444
No 107
>KOG1643 consensus Triosephosphate isomerase [Carbohydrate transport and metabolism]
Probab=20.22 E-value=1.2e+02 Score=24.82 Aligned_cols=36 Identities=33% Similarity=0.440 Sum_probs=26.1
Q ss_pred CCCCceEEeecCChhHHHHHHHHHhhccccCc-eeEEccC
Q 034174 56 TGNNNKINWALKDKQEFIDIVETVYRGARKGR-GLVIAPK 94 (102)
Q Consensus 56 TgnnnKin~~~~~kqefIDiie~iyrgA~kGk-giv~sP~ 94 (102)
-|.|.|+|+ ++|.+-.||++.=-.+--+- -.|+||-
T Consensus 7 vgGNwKmng---s~~s~~eii~~ln~a~~~~~vevvi~pP 43 (247)
T KOG1643|consen 7 VGGNWKMNG---SKQSIKEIIKTLNAAKLPANVEVVIAPP 43 (247)
T ss_pred ecccccccC---cHHHHHHHHHHhhhccCCCCCcEEEeCC
Confidence 478899995 67788888888776665554 5666664
Done!