Query 034174
Match_columns 102
No_of_seqs 103 out of 129
Neff 3.5
Searched_HMMs 29240
Date Mon Mar 25 18:05:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034174.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034174hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2av4_A Thioredoxin-like protei 100.0 2.6E-38 9E-43 234.4 9.7 102 1-102 59-160 (160)
2 1qgv_A Spliceosomal protein U5 99.9 3.3E-22 1.1E-26 137.0 9.1 101 2-102 42-142 (142)
3 3gix_A Thioredoxin-like protei 99.8 7.3E-21 2.5E-25 131.2 10.0 101 2-102 42-142 (149)
4 3m9j_A Thioredoxin; oxidoreduc 96.1 0.023 7.7E-07 34.3 6.3 65 2-78 39-103 (105)
5 3zzx_A Thioredoxin; oxidoreduc 95.9 0.032 1.1E-06 35.9 6.6 65 2-78 39-103 (105)
6 3tco_A Thioredoxin (TRXA-1); d 95.7 0.062 2.1E-06 32.3 7.0 68 2-79 40-107 (109)
7 3qfa_C Thioredoxin; protein-pr 95.5 0.04 1.4E-06 34.9 6.0 65 2-78 50-114 (116)
8 3gnj_A Thioredoxin domain prot 95.3 0.11 3.6E-06 31.5 7.2 68 2-79 41-108 (111)
9 4euy_A Uncharacterized protein 95.3 0.056 1.9E-06 33.2 5.9 68 2-80 37-104 (105)
10 3f3q_A Thioredoxin-1; His TAG, 94.8 0.13 4.3E-06 32.1 6.6 64 3-78 44-107 (109)
11 2e0q_A Thioredoxin; electron t 94.8 0.18 6.2E-06 29.7 7.0 66 3-79 36-101 (104)
12 2vlu_A Thioredoxin, thioredoxi 94.6 0.13 4.4E-06 32.0 6.3 65 3-79 54-118 (122)
13 2trx_A Thioredoxin; electron t 94.6 0.3 1E-05 29.4 7.9 68 2-79 39-106 (108)
14 2j23_A Thioredoxin; immune pro 94.4 0.11 3.7E-06 33.0 5.6 66 3-79 53-119 (121)
15 3hz4_A Thioredoxin; NYSGXRC, P 94.3 0.14 4.9E-06 33.3 6.3 74 2-85 43-116 (140)
16 1ep7_A Thioredoxin CH1, H-type 94.3 0.22 7.5E-06 30.3 6.7 66 3-79 44-109 (112)
17 1xwb_A Thioredoxin; dimerizati 94.3 0.28 9.7E-06 29.2 7.1 65 3-78 40-104 (106)
18 2i4a_A Thioredoxin; acidophIle 94.2 0.37 1.3E-05 28.7 7.5 67 2-78 39-105 (107)
19 1r26_A Thioredoxin; redox-acti 94.1 0.32 1.1E-05 31.5 7.5 66 2-79 56-121 (125)
20 3die_A Thioredoxin, TRX; elect 94.0 0.31 1.1E-05 29.0 6.9 66 2-77 38-103 (106)
21 1syr_A Thioredoxin; SGPP, stru 93.9 0.19 6.4E-06 31.1 5.8 64 3-78 46-109 (112)
22 2yzu_A Thioredoxin; redox prot 93.8 0.36 1.2E-05 28.7 6.9 67 3-79 38-104 (109)
23 2oe3_A Thioredoxin-3; electron 93.8 0.32 1.1E-05 30.7 7.0 64 2-77 49-112 (114)
24 1v98_A Thioredoxin; oxidoreduc 93.5 0.51 1.8E-05 30.3 7.7 69 2-80 69-137 (140)
25 1fb6_A Thioredoxin M; electron 93.5 0.45 1.5E-05 28.3 6.9 67 2-78 37-103 (105)
26 1thx_A Thioredoxin, thioredoxi 93.3 0.57 2E-05 28.3 7.3 67 3-79 45-111 (115)
27 3p2a_A Thioredoxin 2, putative 93.2 0.47 1.6E-05 30.7 7.2 70 2-81 74-143 (148)
28 1t00_A Thioredoxin, TRX; redox 93.0 0.48 1.7E-05 28.8 6.7 67 3-79 43-109 (112)
29 3aps_A DNAJ homolog subfamily 93.0 0.47 1.6E-05 29.4 6.7 74 2-84 40-116 (122)
30 1dby_A Chloroplast thioredoxin 93.0 0.55 1.9E-05 28.2 6.8 67 3-79 39-105 (107)
31 3hxs_A Thioredoxin, TRXP; elec 92.9 0.37 1.3E-05 30.7 6.3 67 3-79 71-137 (141)
32 2o8v_B Thioredoxin 1; disulfid 92.8 1.2 4.2E-05 28.6 8.9 68 2-79 59-126 (128)
33 1ti3_A Thioredoxin H, PTTRXH1; 92.5 0.73 2.5E-05 27.8 6.9 66 3-80 46-111 (113)
34 2vim_A Thioredoxin, TRX; thior 92.5 0.29 1E-05 29.1 5.0 64 3-78 39-102 (104)
35 2dj0_A Thioredoxin-related tra 92.4 0.53 1.8E-05 30.2 6.5 72 2-73 45-123 (137)
36 2dj1_A Protein disulfide-isome 92.3 0.98 3.4E-05 28.5 7.6 71 2-83 53-126 (140)
37 1gh2_A Thioredoxin-like protei 92.1 0.33 1.1E-05 29.5 5.0 42 3-45 41-82 (107)
38 3d22_A TRXH4, thioredoxin H-ty 92.0 0.66 2.2E-05 29.5 6.5 68 3-82 66-133 (139)
39 1w4v_A Thioredoxin, mitochondr 91.9 0.97 3.3E-05 28.3 7.2 68 2-79 50-117 (119)
40 3uvt_A Thioredoxin domain-cont 91.9 0.73 2.5E-05 27.6 6.4 65 3-77 41-108 (111)
41 3ul3_B Thioredoxin, thioredoxi 91.1 0.52 1.8E-05 29.9 5.3 47 2-48 61-107 (128)
42 2ppt_A Thioredoxin-2; thiredox 91.0 1.2 4.2E-05 29.8 7.4 68 2-79 83-150 (155)
43 2dml_A Protein disulfide-isome 90.9 0.31 1.1E-05 30.5 4.1 70 2-80 54-123 (130)
44 1x5d_A Protein disulfide-isome 90.7 1.9 6.3E-05 26.8 7.6 70 3-82 45-118 (133)
45 1mek_A Protein disulfide isome 90.2 0.68 2.3E-05 27.9 5.1 70 2-79 43-115 (120)
46 2l57_A Uncharacterized protein 90.1 1.2 4.1E-05 27.8 6.3 75 3-86 46-122 (126)
47 2qsi_A Putative hydrogenase ex 90.1 0.36 1.2E-05 34.0 4.2 68 3-80 55-122 (137)
48 3h79_A Thioredoxin-like protei 89.6 1.3 4.5E-05 27.9 6.2 68 3-78 53-125 (127)
49 2i1u_A Thioredoxin, TRX, MPT46 89.5 0.91 3.1E-05 27.8 5.3 47 2-48 49-95 (121)
50 3fk8_A Disulphide isomerase; A 89.4 1.3 4.5E-05 27.9 6.1 73 4-79 50-131 (133)
51 1nsw_A Thioredoxin, TRX; therm 89.3 0.95 3.2E-05 27.0 5.2 42 3-44 37-78 (105)
52 2qgv_A Hydrogenase-1 operon pr 88.8 0.62 2.1E-05 32.9 4.6 68 3-80 56-124 (140)
53 1fo5_A Thioredoxin; disulfide 88.6 2 6.9E-05 24.5 6.1 62 3-78 22-83 (85)
54 3dxb_A Thioredoxin N-terminall 88.6 4 0.00014 28.6 8.8 72 2-83 49-120 (222)
55 1xfl_A Thioredoxin H1; AT3G510 88.1 2.8 9.5E-05 26.6 7.1 65 3-79 58-122 (124)
56 2vm1_A Thioredoxin, thioredoxi 87.8 1.2 4.1E-05 27.0 5.0 69 3-83 48-116 (118)
57 1nho_A Probable thioredoxin; b 87.7 2.6 8.8E-05 24.0 6.5 63 3-79 21-83 (85)
58 2djk_A PDI, protein disulfide- 87.6 1.9 6.4E-05 28.0 6.1 72 3-83 42-117 (133)
59 2f51_A Thioredoxin; electron t 87.6 1.3 4.3E-05 28.0 5.1 41 3-44 43-83 (118)
60 2dj3_A Protein disulfide-isome 87.5 2.3 7.8E-05 26.5 6.3 74 3-83 45-120 (133)
61 1x5e_A Thioredoxin domain cont 87.5 3.3 0.00011 25.7 7.1 65 3-78 42-107 (126)
62 2voc_A Thioredoxin; electron t 87.4 1.8 6E-05 26.6 5.7 66 3-78 37-102 (112)
63 2xc2_A Thioredoxinn; oxidoredu 87.1 2.6 9.1E-05 25.8 6.4 63 3-78 53-115 (117)
64 1faa_A Thioredoxin F; electron 86.7 3.3 0.00011 25.6 6.7 64 3-78 57-121 (124)
65 3apq_A DNAJ homolog subfamily 86.5 2.2 7.6E-05 29.5 6.4 68 3-80 134-201 (210)
66 3ga4_A Dolichyl-diphosphooligo 86.3 0.91 3.1E-05 32.9 4.4 45 3-47 64-113 (178)
67 2l5l_A Thioredoxin; structural 86.2 3.8 0.00013 26.1 6.9 68 3-80 58-125 (136)
68 3d6i_A Monothiol glutaredoxin- 86.1 1.7 5.9E-05 26.3 5.0 66 3-80 41-108 (112)
69 3qou_A Protein YBBN; thioredox 85.8 2.5 8.5E-05 30.2 6.4 47 2-48 45-91 (287)
70 3idv_A Protein disulfide-isome 85.7 1.5 5.1E-05 30.0 5.1 66 3-79 167-235 (241)
71 3cxg_A Putative thioredoxin; m 85.3 2.3 7.9E-05 27.4 5.6 67 3-80 60-128 (133)
72 1wmj_A Thioredoxin H-type; str 85.0 0.85 2.9E-05 28.3 3.3 70 2-83 55-124 (130)
73 3evi_A Phosducin-like protein 84.9 1.3 4.4E-05 29.3 4.3 47 1-51 41-87 (118)
74 1oaz_A Thioredoxin 1; immune s 83.8 3 0.0001 26.6 5.6 66 2-77 54-119 (123)
75 3dml_A Putative uncharacterize 83.0 2.7 9.3E-05 28.5 5.4 61 16-86 53-115 (116)
76 2ywm_A Glutaredoxin-like prote 82.9 8.9 0.0003 26.3 8.1 67 5-81 47-115 (229)
77 2wz9_A Glutaredoxin-3; protein 81.3 3.1 0.0001 27.3 5.0 70 3-84 52-121 (153)
78 2pu9_C TRX-F, thioredoxin F-ty 80.3 3.2 0.00011 25.1 4.5 65 3-79 44-109 (111)
79 3emx_A Thioredoxin; structural 79.0 2.7 9.2E-05 27.0 4.1 71 3-85 51-130 (135)
80 2l6c_A Thioredoxin; oxidoreduc 78.3 2.9 9.8E-05 25.7 3.9 66 3-79 39-104 (110)
81 2es7_A Q8ZP25_salty, putative 76.4 2.4 8.4E-05 28.5 3.4 66 4-80 57-124 (142)
82 1a8l_A Protein disulfide oxido 76.1 14 0.00048 25.0 7.3 67 3-79 154-224 (226)
83 3idv_A Protein disulfide-isome 75.4 4.1 0.00014 27.8 4.4 69 3-82 52-123 (241)
84 1sji_A Calsequestrin 2, calseq 73.1 7.1 0.00024 29.1 5.5 45 4-48 55-100 (350)
85 1a8l_A Protein disulfide oxido 72.6 12 0.0004 25.4 6.2 69 3-81 43-113 (226)
86 3f9u_A Putative exported cytoc 72.0 6.1 0.00021 26.0 4.5 27 61-87 146-172 (172)
87 3us3_A Calsequestrin-1; calciu 72.0 7.3 0.00025 29.6 5.4 46 4-49 57-103 (367)
88 2yj7_A LPBCA thioredoxin; oxid 73.3 0.88 3E-05 26.7 0.0 42 3-44 39-80 (106)
89 2dbc_A PDCL2, unnamed protein 70.4 7.2 0.00025 25.1 4.5 70 2-78 49-118 (135)
90 1sen_A Thioredoxin-like protei 70.1 1.6 5.4E-05 29.5 1.2 68 16-83 79-150 (164)
91 2qc7_A ERP31, ERP28, endoplasm 69.8 5.3 0.00018 29.7 4.1 46 3-48 40-94 (240)
92 1wou_A Thioredoxin -related pr 68.9 3.9 0.00013 25.8 2.8 44 3-47 51-101 (123)
93 2djj_A PDI, protein disulfide- 68.9 13 0.00046 22.4 5.3 65 3-78 45-114 (121)
94 3q6o_A Sulfhydryl oxidase 1; p 68.8 9.5 0.00032 26.7 5.1 43 3-45 50-97 (244)
95 2c0g_A ERP29 homolog, windbeut 66.0 8.2 0.00028 28.9 4.5 68 3-79 51-130 (248)
96 2hls_A Protein disulfide oxido 64.0 15 0.0005 26.4 5.4 66 3-81 47-117 (243)
97 2zci_A Phosphoenolpyruvate car 63.6 5.3 0.00018 34.9 3.5 37 52-94 95-131 (610)
98 2fgx_A Putative thioredoxin; N 62.1 4.4 0.00015 26.9 2.2 45 3-50 48-92 (107)
99 2r2j_A Thioredoxin domain-cont 61.3 13 0.00045 28.1 5.0 48 3-50 42-95 (382)
100 2b5e_A Protein disulfide-isome 57.9 11 0.00039 29.3 4.2 46 3-48 51-97 (504)
101 3ed3_A Protein disulfide-isome 57.4 13 0.00044 27.7 4.2 46 3-48 55-102 (298)
102 1a0r_P Phosducin, MEKA, PP33; 57.1 9.8 0.00034 28.4 3.6 45 2-48 152-196 (245)
103 3f8u_A Protein disulfide-isome 56.4 13 0.00044 28.6 4.2 45 3-48 41-85 (481)
104 3ph9_A Anterior gradient prote 56.0 7.2 0.00025 26.8 2.5 65 19-83 81-147 (151)
105 3mjd_A Orotate phosphoribosylt 53.5 4.5 0.00015 30.4 1.2 23 51-78 10-32 (232)
106 3qcp_A QSOX from trypanosoma b 52.4 37 0.0013 28.0 6.6 76 4-79 63-150 (470)
107 1zma_A Bacterocin transport ac 51.9 37 0.0013 20.5 5.1 42 4-48 50-97 (118)
108 2kuc_A Putative disulphide-iso 51.5 39 0.0013 20.6 5.8 66 6-80 53-120 (130)
109 3ira_A Conserved protein; meth 50.6 37 0.0013 23.9 5.6 38 7-44 66-111 (173)
110 2fwh_A Thiol:disulfide interch 50.5 11 0.00036 24.0 2.4 63 6-78 57-125 (134)
111 3apo_A DNAJ homolog subfamily 50.5 13 0.00045 30.7 3.6 47 3-50 153-199 (780)
112 2faf_A Phosphoenolpyruvate car 46.6 12 0.00041 32.7 2.9 28 67-94 104-131 (608)
113 3apo_A DNAJ homolog subfamily 45.5 63 0.0021 26.6 6.9 71 3-82 695-768 (780)
114 2lst_A Thioredoxin; structural 51.1 4.5 0.00015 25.1 0.0 73 6-86 45-121 (130)
115 2lrn_A Thiol:disulfide interch 44.4 57 0.0019 20.5 8.4 71 4-86 50-146 (152)
116 2ywm_A Glutaredoxin-like prote 43.8 59 0.002 22.0 5.6 67 4-84 157-223 (229)
117 3t58_A Sulfhydryl oxidase 1; o 42.8 39 0.0013 27.7 5.2 69 3-81 50-127 (519)
118 3moe_A Phosphoenolpyruvate car 39.8 12 0.0004 32.9 1.8 27 68-94 120-146 (624)
119 3f8u_A Protein disulfide-isome 39.2 72 0.0025 24.4 6.0 68 3-79 390-459 (481)
120 3u5i_q A0, L10E, 60S acidic ri 38.7 29 0.00098 27.3 3.7 75 3-79 10-103 (312)
121 1gxg_A Colicin E8 immunity pro 37.9 17 0.00058 24.0 1.9 17 67-83 10-26 (85)
122 1fr2_A Colicin E9 immunity pro 37.5 17 0.00057 24.0 1.9 17 67-83 10-26 (86)
123 1ego_A Glutaredoxin; electron 37.4 28 0.00096 19.8 2.7 58 4-80 20-83 (85)
124 2hls_A Protein disulfide oxido 35.9 1.2E+02 0.004 21.6 8.2 71 4-88 159-233 (243)
125 3uem_A Protein disulfide-isome 35.6 1E+02 0.0035 22.5 6.1 72 3-83 155-232 (361)
126 3jsy_A Acidic ribosomal protei 35.1 24 0.00083 26.0 2.6 75 3-79 7-102 (213)
127 1unk_A Colicin E7; immunity pr 34.4 20 0.00067 24.0 1.8 17 67-83 10-26 (87)
128 2dlx_A UBX domain-containing p 33.7 1.1E+02 0.0039 20.8 7.5 66 7-83 69-138 (153)
129 2wvq_A Small S protein; prion- 32.9 28 0.00096 25.8 2.7 24 56-79 144-167 (225)
130 2ju5_A Thioredoxin disulfide i 29.7 1.1E+02 0.0039 19.6 6.4 65 6-80 74-151 (154)
131 3u43_A Colicin-E2 immunity pro 29.3 27 0.00092 23.5 1.9 17 67-83 10-26 (94)
132 2k0d_X IMME7, colicin-E7 immun 27.9 28 0.00095 24.0 1.8 18 66-83 16-33 (101)
133 2trc_P Phosducin, MEKA, PP33; 25.7 59 0.002 23.1 3.3 46 2-50 139-184 (217)
134 1ilo_A Conserved hypothetical 24.2 96 0.0033 16.9 3.7 43 3-50 19-61 (77)
135 2guk_A Hypothetical protein PG 23.5 60 0.0021 23.0 2.9 21 58-79 61-81 (120)
136 1v5r_A Growth-arrest-specific 23.4 50 0.0017 22.6 2.4 26 32-57 38-63 (97)
137 1z6n_A Hypothetical protein PA 22.1 72 0.0025 21.9 3.0 42 4-47 75-119 (167)
138 2gpr_A Glucose-permease IIA co 22.1 42 0.0014 23.8 1.9 18 78-95 27-44 (154)
139 3kp8_A Vkorc1/thioredoxin doma 21.8 50 0.0017 20.6 2.0 18 25-42 54-71 (106)
140 2b5e_A Protein disulfide-isome 21.7 1.2E+02 0.0041 23.4 4.5 66 4-79 397-465 (504)
141 3i7t_A RV2704, putative unchar 20.6 20 0.00067 25.1 -0.2 20 16-35 69-88 (149)
No 1
>2av4_A Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECIFIC 15KD prote structural genomics, structural genomics consortium, SGC, U function; 1.73A {Plasmodium yoelii}
Probab=100.00 E-value=2.6e-38 Score=234.39 Aligned_cols=102 Identities=81% Similarity=1.371 Sum_probs=94.4
Q ss_pred ChhHHHHhHHhhhcceEEEEEeCCCccchhhhccccCcceEEEEeeCceeEEecCCCCCceEEeecCChhHHHHHHHHHh
Q 034174 1 MDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVY 80 (102)
Q Consensus 1 mDevL~~~a~~v~~~a~IY~vDi~~Vpdfn~myeL~dP~tvMFFfrnkHm~vD~GTgnnnKin~~~~~kqefIDiie~iy 80 (102)
|+.+|.++|++.++.+.||.||++|+|++.++|++..++|+|||++++|++||+|||||||++|++++||+|+++||.+|
T Consensus 59 m~PvleelA~e~~~~v~f~kVDVDe~~e~a~~y~V~siPT~~fFk~G~~v~vd~Gtgd~~k~vGa~~~k~~l~~~ie~~~ 138 (160)
T 2av4_A 59 MDELLYKVADDIKNFCVIYLVDITEVPDFNTMYELYDPVSVMFFYRNKHMMIDLGTGNNNKINWPMNNKQEFIDIVETIF 138 (160)
T ss_dssp HHHHHHHHHHHHTTTEEEEEEETTTCCTTTTTTTCCSSEEEEEEETTEEEEEECSSSCCSCBCSCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCCcEEEEEECCCCHHHHHHcCCCCCCEEEEEECCEEEEEecCCCCcCeEEeecCCHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccccCceeEEccCCccccccC
Q 034174 81 RGARKGRGLVIAPKDYSTKYRY 102 (102)
Q Consensus 81 rgA~kGkgiv~sP~dy~~~~~~ 102 (102)
|||+||||||+||+||||+|||
T Consensus 139 r~a~~g~~~v~~p~~~~~~~~~ 160 (160)
T 2av4_A 139 RGARKGRGLVISPKDYSTKYKY 160 (160)
T ss_dssp HHHHTTCSEEECSSCC------
T ss_pred HHhhcCCeEEECCCccchhccC
Confidence 9999999999999999999987
No 2
>1qgv_A Spliceosomal protein U5-15KD; snRNP, thioredoxin, transcription; 1.40A {Homo sapiens} SCOP: c.47.1.8 PDB: 1syx_A 1pqn_A
Probab=99.87 E-value=3.3e-22 Score=137.01 Aligned_cols=101 Identities=86% Similarity=1.406 Sum_probs=83.2
Q ss_pred hhHHHHhHHhhhcceEEEEEeCCCccchhhhccccCcceEEEEeeCceeEEecCCCCCceEEeecCChhHHHHHHHHHhh
Q 034174 2 DEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVYR 81 (102)
Q Consensus 2 DevL~~~a~~v~~~a~IY~vDi~~Vpdfn~myeL~dP~tvMFFfrnkHm~vD~GTgnnnKin~~~~~kqefIDiie~iyr 81 (102)
...|.+++++.+.-..++.||+++-|++.+-|.+...+|++||-+++.+..++|+|++++++|+++++++|+++|+.+++
T Consensus 42 ~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~~~~i~~~Pt~~~~~~G~~v~~~~g~~~~~~~~g~~~~~~~l~~~i~~~~~ 121 (142)
T 1qgv_A 42 DEVLYSIAEKVKNFAVIYLVDITEVPDFNKMYELYDPCTVMFFFRNKHIMIDLGTGNNNKINWAMEDKQEMVDIIETVYR 121 (142)
T ss_dssp HHHHHHHHHHHTTTEEEEEEETTTCCTTTTSSCSCSSCEEEEEETTEEEEEECC------CCSCCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCeEEEEEccccCHHHHHHcCCCCCCEEEEEECCcEEEEecCCCCcceeeeecCcHHHHHHHHHHHHH
Confidence 35678888888666889999999999999999998888888888899999999999999999999999999999999999
Q ss_pred ccccCceeEEccCCccccccC
Q 034174 82 GARKGRGLVIAPKDYSTKYRY 102 (102)
Q Consensus 82 gA~kGkgiv~sP~dy~~~~~~ 102 (102)
||++||||++||++||++|||
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~ 142 (142)
T 1qgv_A 122 GARKGRGLVVSPKDYSTKYRY 142 (142)
T ss_dssp HHTTTCSEEECCCCCC-----
T ss_pred HHhcCCeEEeCCCCccccccC
Confidence 999999999999999999998
No 3
>3gix_A Thioredoxin-like protein 4B; PRE-mRNA splicing, TXNL4B, DLP, cell cycle, mRNA processing, mRNA splicing, nucleus, phosphoprotein, splicing; HET: SUC; 1.33A {Homo sapiens} SCOP: c.47.1.0 PDB: 1xbs_A
Probab=99.85 E-value=7.3e-21 Score=131.22 Aligned_cols=101 Identities=32% Similarity=0.661 Sum_probs=92.2
Q ss_pred hhHHHHhHHhhhcceEEEEEeCCCccchhhhccccCcceEEEEeeCceeEEecCCCCCceEEeecCChhHHHHHHHHHhh
Q 034174 2 DEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVYR 81 (102)
Q Consensus 2 DevL~~~a~~v~~~a~IY~vDi~~Vpdfn~myeL~dP~tvMFFfrnkHm~vD~GTgnnnKin~~~~~kqefIDiie~iyr 81 (102)
...|.+++++.++-..++.||+++.|++.+.|.+.-.+|++||-+++.+++|+|+|++.++.+++.++++|++.++.++|
T Consensus 42 ~p~l~~l~~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~v~~~~g~~~~~~~~G~~~~~~~l~~~l~~~~~ 121 (149)
T 3gix_A 42 DDILSKTSSDLSKMAAIYLVDVDQTAVYTQYFDISYIPSTVFFFNGQHMKVDYGSPDHTKFVGSFKTKQDFIDLIEVIYR 121 (149)
T ss_dssp HHHHHHHHTTTTTTEEEEEEETTTCCHHHHHTTCCSSSEEEEEETTEEEEEECSSSCCSCEESCCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCceEEEEEECCcCHHHHHHcCCCccCeEEEEECCeEEEeecCCCCCCeEeeecCCHHHHHHHHHHHHH
Confidence 45788889888887899999999999999999997655556888899999999999999999999999999999999999
Q ss_pred ccccCceeEEccCCccccccC
Q 034174 82 GARKGRGLVIAPKDYSTKYRY 102 (102)
Q Consensus 82 gA~kGkgiv~sP~dy~~~~~~ 102 (102)
||++|||+|.||++|++++++
T Consensus 122 ~~~~g~~~~~s~~~~~~~~~~ 142 (149)
T 3gix_A 122 GAMRGKLIVQSPIDPKNIPKY 142 (149)
T ss_dssp HHHTTCSEEECCSCGGGSCCC
T ss_pred HhhcCCceEECCccccccccc
Confidence 999999999999999998765
No 4
>3m9j_A Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} SCOP: c.47.1.1 PDB: 3m9k_A 2hsh_A 1erv_A 2ifq_A 2ifq_B 1auc_A 1eru_A 1ert_A 3kd0_A 1aiu_A 3trx_A 4trx_A 1trs_A 1tru_A 1trv_A 1trw_A 3e3e_A* 1cqg_A 1cqh_A 1mdi_A ...
Probab=96.11 E-value=0.023 Score=34.30 Aligned_cols=65 Identities=18% Similarity=0.322 Sum_probs=46.7
Q ss_pred hhHHHHhHHhhhcceEEEEEeCCCccchhhhccccCcceEEEEeeCceeEEecCCCCCceEEeecCChhHHHHHHHH
Q 034174 2 DEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVET 78 (102)
Q Consensus 2 DevL~~~a~~v~~~a~IY~vDi~~Vpdfn~myeL~dP~tvMFFfrnkHm~vD~GTgnnnKin~~~~~kqefIDiie~ 78 (102)
...|.+++++.++ ..++.+|.++-|+..+.|.+..-+|+++|-+++.+. ++.+. +.+++.+.++.
T Consensus 39 ~~~~~~~~~~~~~-~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~---------~~~g~--~~~~l~~~l~~ 103 (105)
T 3m9j_A 39 KPFFHSLSEKYSN-VIFLEVDVDDCQDVASESEVKSMPTFQFFKKGQKVG---------EFSGA--NKEKLEATINE 103 (105)
T ss_dssp HHHHHHHHHHSTT-SEEEEEETTTCHHHHHHTTCCBSSEEEEEETTEEEE---------EEESS--CHHHHHHHHHH
T ss_pred HHHHHHHHHHccC-eEEEEEEhhhhHHHHHHcCCCcCcEEEEEECCeEEE---------EEeCC--CHHHHHHHHHH
Confidence 3567788888777 778899999999999999998777776774444432 23333 56777776664
No 5
>3zzx_A Thioredoxin; oxidoreductase; 1.88A {Litopenaeus vannamei}
Probab=95.87 E-value=0.032 Score=35.93 Aligned_cols=65 Identities=18% Similarity=0.365 Sum_probs=46.0
Q ss_pred hhHHHHhHHhhhcceEEEEEeCCCccchhhhccccCcceEEEEeeCceeEEecCCCCCceEEeecCChhHHHHHHHH
Q 034174 2 DEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVET 78 (102)
Q Consensus 2 DevL~~~a~~v~~~a~IY~vDi~~Vpdfn~myeL~dP~tvMFFfrnkHm~vD~GTgnnnKin~~~~~kqefIDiie~ 78 (102)
...+.++++..++ ..++-||+++-|+..+-|.+.--+|++||-+++-+ + ++.++ +++++.+.|+.
T Consensus 39 ~p~~~~~~~~~~~-~~~~~vd~d~~~~l~~~~~V~~~PT~~~~~~G~~v--~-------~~~G~--~~~~l~~~i~k 103 (105)
T 3zzx_A 39 APKLEELSQSMSD-VVFLKVDVDECEDIAQDNQIACMPTFLFMKNGQKL--D-------SLSGA--NYDKLLELVEK 103 (105)
T ss_dssp HHHHHHHHHHCTT-EEEEEEETTTCHHHHHHTTCCBSSEEEEEETTEEE--E-------EEESC--CHHHHHHHHHH
T ss_pred CcchhhhhhccCC-eEEEEEecccCHHHHHHcCCCeecEEEEEECCEEE--E-------EEeCc--CHHHHHHHHHh
Confidence 3467788887776 45788999999999999999766687666444432 2 33442 56777777763
No 6
>3tco_A Thioredoxin (TRXA-1); disulfide oxidoreductase, oxidoreductase; 1.90A {Sulfolobus solfataricus} SCOP: c.47.1.0
Probab=95.69 E-value=0.062 Score=32.29 Aligned_cols=68 Identities=19% Similarity=0.259 Sum_probs=48.0
Q ss_pred hhHHHHhHHhhhcceEEEEEeCCCccchhhhccccCcceEEEEeeCceeEEecCCCCCceEEeecCChhHHHHHHHHH
Q 034174 2 DEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETV 79 (102)
Q Consensus 2 DevL~~~a~~v~~~a~IY~vDi~~Vpdfn~myeL~dP~tvMFFfrnkHm~vD~GTgnnnKin~~~~~kqefIDiie~i 79 (102)
...|.+++++.+.-..++.+|.++-|++.+.|.+..-+|++|| ++..+.- ++.+ ..+.+++...++.+
T Consensus 40 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~Pt~~~~-~~g~~~~--------~~~g-~~~~~~l~~~l~~~ 107 (109)
T 3tco_A 40 EPIYKKVAEKYKGKAVFGRLNVDENQKIADKYSVLNIPTTLIF-VNGQLVD--------SLVG-AVDEDTLESTVNKY 107 (109)
T ss_dssp HHHHHHHHHHTTTTSEEEEEETTTCHHHHHHTTCCSSSEEEEE-ETTEEEE--------EEES-CCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHhCCCceEEEEccccCHHHHHhcCcccCCEEEEE-cCCcEEE--------eeec-cCCHHHHHHHHHHH
Confidence 3467788888876678899999999999999999876676666 4433221 1222 23567888877764
No 7
>3qfa_C Thioredoxin; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_C*
Probab=95.54 E-value=0.04 Score=34.91 Aligned_cols=65 Identities=18% Similarity=0.330 Sum_probs=46.3
Q ss_pred hhHHHHhHHhhhcceEEEEEeCCCccchhhhccccCcceEEEEeeCceeEEecCCCCCceEEeecCChhHHHHHHHH
Q 034174 2 DEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVET 78 (102)
Q Consensus 2 DevL~~~a~~v~~~a~IY~vDi~~Vpdfn~myeL~dP~tvMFFfrnkHm~vD~GTgnnnKin~~~~~kqefIDiie~ 78 (102)
...|.+++++.++ ..++.||+++-++..+.|.+.--+|++||-+++.+. ++.+. +++++.+.|+.
T Consensus 50 ~p~l~~l~~~~~~-v~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~~~---------~~~G~--~~~~l~~~l~~ 114 (116)
T 3qfa_C 50 KPFFHSLSEKYSN-VIFLEVDVDDCQDVASECEVKSMPTFQFFKKGQKVG---------EFSGA--NKEKLEATINE 114 (116)
T ss_dssp HHHHHHHHTTCTT-SEEEEEETTTTHHHHHHTTCCSSSEEEEESSSSEEE---------EEESC--CHHHHHHHHHH
T ss_pred HHHHHHHHHHCCC-CEEEEEECCCCHHHHHHcCCccccEEEEEeCCeEEE---------EEcCC--CHHHHHHHHHH
Confidence 3467788888877 788999999999999999998766766663333322 23333 66777777764
No 8
>3gnj_A Thioredoxin domain protein; APC92103, STR genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.99A {Desulfitobacterium hafniense dcb-2} SCOP: c.47.1.0
Probab=95.31 E-value=0.11 Score=31.55 Aligned_cols=68 Identities=15% Similarity=0.184 Sum_probs=47.1
Q ss_pred hhHHHHhHHhhhcceEEEEEeCCCccchhhhccccCcceEEEEeeCceeEEecCCCCCceEEeecCChhHHHHHHHHH
Q 034174 2 DEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETV 79 (102)
Q Consensus 2 DevL~~~a~~v~~~a~IY~vDi~~Vpdfn~myeL~dP~tvMFFfrnkHm~vD~GTgnnnKin~~~~~kqefIDiie~i 79 (102)
...|.+++++.++-..++.+|+++-|++.+.|.+.--+|++||-+++.+.- +.+ ..+.+++...++..
T Consensus 41 ~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~g~~~~~---------~~g-~~~~~~l~~~l~~~ 108 (111)
T 3gnj_A 41 TPVLEELRLNYEESFGFYYVDVEEEKTLFQRFSLKGVPQILYFKDGEYKGK---------MAG-DVEDDEVEQMIADV 108 (111)
T ss_dssp HHHHHHHHHHTTTTSEEEEEETTTCHHHHHHTTCCSSCEEEEEETTEEEEE---------EES-SCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCceEEEEEECCcChhHHHhcCCCcCCEEEEEECCEEEEE---------Eec-cCCHHHHHHHHHHH
Confidence 356778888877657889999999999999999976667666644443321 111 24567777777654
No 9
>4euy_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; 2.90A {Bacillus cereus}
Probab=95.30 E-value=0.056 Score=33.21 Aligned_cols=68 Identities=12% Similarity=0.198 Sum_probs=37.9
Q ss_pred hhHHHHhHHhhhcceEEEEEeCCCccchhhhccccCcceEEEEeeCceeEEecCCCCCceEEeecCChhHHHHHHHHHh
Q 034174 2 DEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVY 80 (102)
Q Consensus 2 DevL~~~a~~v~~~a~IY~vDi~~Vpdfn~myeL~dP~tvMFFfrnkHm~vD~GTgnnnKin~~~~~kqefIDiie~iy 80 (102)
...|.+++++..+ ..++.||+++-|+..+.|.+..-+|+++|-+++-+ + ++.+ ..+++++.+.++..+
T Consensus 37 ~p~~~~~~~~~~~-~~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~G~~~--~-------~~~g-~~~~~~l~~~l~~~~ 104 (105)
T 4euy_A 37 LRKVNYVLENYNY-VEKIEILLQDMQEIAGRYAVFTGPTVLLFYNGKEI--L-------RESR-FISLENLERTIQLFE 104 (105)
T ss_dssp HHHHHHHHHTCTT-EEEEEEEECCC---------CCCCEEEEEETTEEE--E-------EEES-SCCHHHHHHHHHTTC
T ss_pred HHHHHHHHHHcCC-ceEEEEECCCCHHHHHhcCCCCCCEEEEEeCCeEE--E-------EEeC-CcCHHHHHHHHHHhh
Confidence 3467777777655 67789999999999999999876676666433322 1 1222 236788888877543
No 10
>3f3q_A Thioredoxin-1; His TAG, electron transport, cytoplasm, deoxyribonucleotide synthesis, golgi apparatus, membrane, nucleus; 1.76A {Saccharomyces cerevisiae} PDB: 3f3r_A* 2i9h_A 2fa4_A 2hsy_A 3pin_A 4dss_B
Probab=94.82 E-value=0.13 Score=32.09 Aligned_cols=64 Identities=19% Similarity=0.301 Sum_probs=44.2
Q ss_pred hHHHHhHHhhhcceEEEEEeCCCccchhhhccccCcceEEEEeeCceeEEecCCCCCceEEeecCChhHHHHHHHH
Q 034174 3 EVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVET 78 (102)
Q Consensus 3 evL~~~a~~v~~~a~IY~vDi~~Vpdfn~myeL~dP~tvMFFfrnkHm~vD~GTgnnnKin~~~~~kqefIDiie~ 78 (102)
..|.+++++.++ ..++.+|+++-+++.+-|.+.--+|++||-+++-+. ++.+. +.+++.+.|+.
T Consensus 44 p~l~~l~~~~~~-~~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~G~~~~---------~~~G~--~~~~l~~~i~~ 107 (109)
T 3f3q_A 44 PMIEKFSEQYPQ-ADFYKLDVDELGDVAQKNEVSAMPTLLLFKNGKEVA---------KVVGA--NPAAIKQAIAA 107 (109)
T ss_dssp HHHHHHHHHCTT-SEEEEEETTTCHHHHHHTTCCSSSEEEEEETTEEEE---------EEESS--CHHHHHHHHHH
T ss_pred HHHHHHHHHCCC-CEEEEEECCCCHHHHHHcCCCccCEEEEEECCEEEE---------EEeCC--CHHHHHHHHHh
Confidence 467788887777 677899999999999999997666766664444332 23333 44666666653
No 11
>2e0q_A Thioredoxin; electron transport; 1.49A {Sulfolobus tokodaii} PDB: 3hhv_A
Probab=94.80 E-value=0.18 Score=29.67 Aligned_cols=66 Identities=18% Similarity=0.248 Sum_probs=44.8
Q ss_pred hHHHHhHHhhhcceEEEEEeCCCccchhhhccccCcceEEEEeeCceeEEecCCCCCceEEeecCChhHHHHHHHHH
Q 034174 3 EVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETV 79 (102)
Q Consensus 3 evL~~~a~~v~~~a~IY~vDi~~Vpdfn~myeL~dP~tvMFFfrnkHm~vD~GTgnnnKin~~~~~kqefIDiie~i 79 (102)
..|.+++++.++ ..++.+|+++-+++.+-|.+..-+|+++|-+++.+. ++.+ ..+.+++.+.++.+
T Consensus 36 ~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~---------~~~g-~~~~~~l~~~l~~~ 101 (104)
T 2e0q_A 36 PIIEELAEDYPQ-VGFGKLNSDENPDIAARYGVMSLPTVIFFKDGEPVD---------EIIG-AVPREEIEIRIKNL 101 (104)
T ss_dssp HHHHHHHHHCTT-SEEEEEETTTCHHHHHHTTCCSSCEEEEEETTEEEE---------EEES-CCCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCC-ceEEEEECCCCHHHHHhCCccccCEEEEEECCeEhh---------hccC-CCCHHHHHHHHHHH
Confidence 456778887777 888999999999999999997766766663333322 1122 23467777777653
No 12
>2vlu_A Thioredoxin, thioredoxin H isoform 2.; oxidoreductase, thioredoxin-fold, protein disulfide reductase; 1.70A {Hordeum vulgare var} PDB: 2vlt_A 2vlv_A 2iwt_A*
Probab=94.63 E-value=0.13 Score=32.02 Aligned_cols=65 Identities=22% Similarity=0.364 Sum_probs=45.7
Q ss_pred hHHHHhHHhhhcceEEEEEeCCCccchhhhccccCcceEEEEeeCceeEEecCCCCCceEEeecCChhHHHHHHHHH
Q 034174 3 EVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETV 79 (102)
Q Consensus 3 evL~~~a~~v~~~a~IY~vDi~~Vpdfn~myeL~dP~tvMFFfrnkHm~vD~GTgnnnKin~~~~~kqefIDiie~i 79 (102)
..|.+++++.++ ..++.+|+++-+++.+-|.+.--+|+++| ++..+. .++.+.. ++++.+.++..
T Consensus 54 ~~l~~~~~~~~~-~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~-~~G~~~--------~~~~G~~--~~~l~~~l~~~ 118 (122)
T 2vlu_A 54 PVFADLAKKFPN-AVFLKVDVDELKPIAEQFSVEAMPTFLFM-KEGDVK--------DRVVGAI--KEELTAKVGLH 118 (122)
T ss_dssp HHHHHHHHHCTT-SEEEEEETTTCHHHHHHTTCCSSSEEEEE-ETTEEE--------EEEESSC--HHHHHHHHHHH
T ss_pred HHHHHHHHHCCC-cEEEEEECCCCHHHHHHcCCCcccEEEEE-eCCEEE--------EEEeCcC--HHHHHHHHHHH
Confidence 457778887777 78899999999999999999765676555 443221 1344444 67888887754
No 13
>2trx_A Thioredoxin; electron transport; 1.68A {Escherichia coli} SCOP: c.47.1.1 PDB: 1skr_B* 1skw_B* 1sl0_B* 1sks_B* 1sl2_B* 1t7p_B* 1t8e_B* 1tk0_B* 1tk5_B* 1tk8_B* 1tkd_B* 1sl1_B* 1x9s_B* 1x9w_B* 1xoa_A 1xob_A 1zyq_B* 2ajq_B* 2bto_T* 2h6x_A ...
Probab=94.62 E-value=0.3 Score=29.42 Aligned_cols=68 Identities=13% Similarity=0.211 Sum_probs=46.1
Q ss_pred hhHHHHhHHhhhcceEEEEEeCCCccchhhhccccCcceEEEEeeCceeEEecCCCCCceEEeecCChhHHHHHHHHH
Q 034174 2 DEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETV 79 (102)
Q Consensus 2 DevL~~~a~~v~~~a~IY~vDi~~Vpdfn~myeL~dP~tvMFFfrnkHm~vD~GTgnnnKin~~~~~kqefIDiie~i 79 (102)
...|.+++++.+.-..++.+|+++-|++.+-|.+.--+|+++|-+++-+. ++.+. .+.+++.+.++..
T Consensus 39 ~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~G~~~~---------~~~G~-~~~~~l~~~l~~~ 106 (108)
T 2trx_A 39 APILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNGEVAA---------TKVGA-LSKGQLKEFLDAN 106 (108)
T ss_dssp HHHHHHHHHHTTTTEEEEEEETTTCTTHHHHTTCCSSSEEEEEETTEEEE---------EEESC-CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcEEEEEECCCCHHHHHHcCCcccCEEEEEeCCEEEE---------EEecC-CCHHHHHHHHHHh
Confidence 34677788877755788999999999999999997666765663333322 12222 3567788777653
No 14
>2j23_A Thioredoxin; immune protein, autoreactivity, cross-reactivity, IGE, fungi, epitope, allergen; 1.41A {Malassezia sympodialis}
Probab=94.35 E-value=0.11 Score=33.00 Aligned_cols=66 Identities=18% Similarity=0.230 Sum_probs=44.2
Q ss_pred hHHHHhHHhhhcc-eEEEEEeCCCccchhhhccccCcceEEEEeeCceeEEecCCCCCceEEeecCChhHHHHHHHHH
Q 034174 3 EVLSSVAETIKNF-AVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETV 79 (102)
Q Consensus 3 evL~~~a~~v~~~-a~IY~vDi~~Vpdfn~myeL~dP~tvMFFfrnkHm~vD~GTgnnnKin~~~~~kqefIDiie~i 79 (102)
..|.+++++.++- ..++.||+++-|++.+-|.+..-+|+++|-+++-+. ++.+. +++++.+.|+.+
T Consensus 53 ~~l~~l~~~~~~~~v~~~~vd~d~~~~~~~~~~v~~~Pt~~~~~~G~~~~---------~~~G~--~~~~l~~~l~~~ 119 (121)
T 2j23_A 53 PVFEKISDTPAGDKVGFYKVDVDEQSQIAQEVGIRAMPTFVFFKNGQKID---------TVVGA--DPSKLQAAITQH 119 (121)
T ss_dssp HHHHHHHTSTHHHHSEEEEEETTTCHHHHHHHTCCSSSEEEEEETTEEEE---------EEESS--CHHHHHHHHHHH
T ss_pred HHHHHHHHHCcCCcEEEEEEECcCCHHHHHHcCCCcccEEEEEECCeEEe---------eEcCC--CHHHHHHHHHHh
Confidence 4566777766654 678899999999999999997656766653333322 22333 567777777653
No 15
>3hz4_A Thioredoxin; NYSGXRC, PSI-II, reduced form, protein structure initiative, structural genomics; 2.30A {Methanosarcina mazei}
Probab=94.35 E-value=0.14 Score=33.31 Aligned_cols=74 Identities=14% Similarity=0.112 Sum_probs=52.6
Q ss_pred hhHHHHhHHhhhcceEEEEEeCCCccchhhhccccCcceEEEEeeCceeEEecCCCCCceEEeecCChhHHHHHHHHHhh
Q 034174 2 DEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVYR 81 (102)
Q Consensus 2 DevL~~~a~~v~~~a~IY~vDi~~Vpdfn~myeL~dP~tvMFFfrnkHm~vD~GTgnnnKin~~~~~kqefIDiie~iyr 81 (102)
...|.+++++.++-..++.||+++-|++.+-|.+.--+|+++|-+++-+ . ++.+ ..+.++|.+.|+.+..
T Consensus 43 ~~~l~~l~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~G~~~--~-------~~~G-~~~~~~l~~~l~~~l~ 112 (140)
T 3hz4_A 43 EPYFEEYAKEYGSSAVFGRINIATNPWTAEKYGVQGTPTFKFFCHGRPV--W-------EQVG-QIYPSILKNAVRDMLQ 112 (140)
T ss_dssp HHHHHHHHHHHTTTSEEEEEETTTCHHHHHHHTCCEESEEEEEETTEEE--E-------EEES-SCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCceEEEEEECCcCHhHHHHCCCCcCCEEEEEeCCcEE--E-------EEcC-CCCHHHHHHHHHHHhc
Confidence 4567888888887788899999999999999999654576666433332 1 1222 2456889999888876
Q ss_pred cccc
Q 034174 82 GARK 85 (102)
Q Consensus 82 gA~k 85 (102)
.+.+
T Consensus 113 ~~~~ 116 (140)
T 3hz4_A 113 HGEE 116 (140)
T ss_dssp HHHH
T ss_pred cccc
Confidence 6544
No 16
>1ep7_A Thioredoxin CH1, H-type; electron transport; 2.10A {Chlamydomonas reinhardtii} SCOP: c.47.1.1 PDB: 1tof_A 1ep8_A
Probab=94.32 E-value=0.22 Score=30.26 Aligned_cols=66 Identities=9% Similarity=0.132 Sum_probs=45.1
Q ss_pred hHHHHhHHhhhcceEEEEEeCCCccchhhhccccCcceEEEEeeCceeEEecCCCCCceEEeecCChhHHHHHHHHH
Q 034174 3 EVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETV 79 (102)
Q Consensus 3 evL~~~a~~v~~~a~IY~vDi~~Vpdfn~myeL~dP~tvMFFfrnkHm~vD~GTgnnnKin~~~~~kqefIDiie~i 79 (102)
..|.+++++.+.-..++.+|.++-+++.+-|.+..-+|+++| ++..+.- ++.+. +.+++.+.++.+
T Consensus 44 ~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~-~~G~~~~--------~~~G~--~~~~l~~~l~~~ 109 (112)
T 1ep7_A 44 PLFETLSNDYAGKVIFLKVDVDAVAAVAEAAGITAMPTFHVY-KDGVKAD--------DLVGA--SQDKLKALVAKH 109 (112)
T ss_dssp HHHHHHHHHTTTTSEEEEEETTTTHHHHHHHTCCBSSEEEEE-ETTEEEE--------EEESC--CHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCeEEEEEECCchHHHHHHcCCCcccEEEEE-ECCeEEE--------EEcCC--CHHHHHHHHHHH
Confidence 456777777764467889999999999999999765676555 4433211 23333 567888887765
No 17
>1xwb_A Thioredoxin; dimerization, redox regulation, THI X-RAY electron transport; 2.20A {Drosophila melanogaster} SCOP: c.47.1.1 PDB: 1xw9_A 1xwc_A 1xwa_A
Probab=94.26 E-value=0.28 Score=29.22 Aligned_cols=65 Identities=15% Similarity=0.296 Sum_probs=44.2
Q ss_pred hHHHHhHHhhhcceEEEEEeCCCccchhhhccccCcceEEEEeeCceeEEecCCCCCceEEeecCChhHHHHHHHH
Q 034174 3 EVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVET 78 (102)
Q Consensus 3 evL~~~a~~v~~~a~IY~vDi~~Vpdfn~myeL~dP~tvMFFfrnkHm~vD~GTgnnnKin~~~~~kqefIDiie~ 78 (102)
..|.+++++.+.-..++.+|.++-+++.+-|.+..-+|+++|-+++-+. ++.+ .+.+++.+.++.
T Consensus 40 ~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~G~~~~---------~~~g--~~~~~l~~~i~~ 104 (106)
T 1xwb_A 40 PKLVELSTQFADNVVVLKVDVDECEDIAMEYNISSMPTFVFLKNGVKVE---------EFAG--ANAKRLEDVIKA 104 (106)
T ss_dssp HHHHHHHHHTTTTEEEEEEETTTCHHHHHHTTCCSSSEEEEEETTEEEE---------EEES--CCHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCeEEEEEeccchHHHHHHcCCCcccEEEEEcCCcEEE---------EEcC--CCHHHHHHHHHH
Confidence 4567778877555788999999999999999997666766654444332 2233 245667776654
No 18
>2i4a_A Thioredoxin; acidophIle, disulfide exchange, oxidoreductase; 1.00A {Acetobacter aceti}
Probab=94.16 E-value=0.37 Score=28.74 Aligned_cols=67 Identities=18% Similarity=0.190 Sum_probs=45.1
Q ss_pred hhHHHHhHHhhhcceEEEEEeCCCccchhhhccccCcceEEEEeeCceeEEecCCCCCceEEeecCChhHHHHHHHH
Q 034174 2 DEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVET 78 (102)
Q Consensus 2 DevL~~~a~~v~~~a~IY~vDi~~Vpdfn~myeL~dP~tvMFFfrnkHm~vD~GTgnnnKin~~~~~kqefIDiie~ 78 (102)
...|.+++++.++-..++.+|+++-|++.+-|.+.--+|+++|-+++-+.- +.+ ..+++++.+.++.
T Consensus 39 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~G~~~~~---------~~G-~~~~~~l~~~l~~ 105 (107)
T 2i4a_A 39 GPALGEIGKEFAGKVTVAKVNIDDNPETPNAYQVRSIPTLMLVRDGKVIDK---------KVG-ALPKSQLKAWVES 105 (107)
T ss_dssp HHHHHHHHHHHTTSEEEEEEETTTCCHHHHHTTCCSSSEEEEEETTEEEEE---------EES-CCCHHHHHHHHHH
T ss_pred hHHHHHHHHHhCCcEEEEEEECCCCHHHHHhcCCCccCEEEEEeCCEEEEE---------ecC-CCCHHHHHHHHHh
Confidence 345777888877557889999999999999999976667666633333221 122 2356777777654
No 19
>1r26_A Thioredoxin; redox-active disulfide, electron transport; 1.40A {Trypanosoma} SCOP: c.47.1.1
Probab=94.09 E-value=0.32 Score=31.52 Aligned_cols=66 Identities=8% Similarity=0.130 Sum_probs=45.4
Q ss_pred hhHHHHhHHhhhcceEEEEEeCCCccchhhhccccCcceEEEEeeCceeEEecCCCCCceEEeecCChhHHHHHHHHH
Q 034174 2 DEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETV 79 (102)
Q Consensus 2 DevL~~~a~~v~~~a~IY~vDi~~Vpdfn~myeL~dP~tvMFFfrnkHm~vD~GTgnnnKin~~~~~kqefIDiie~i 79 (102)
...|.+++++.++ ..++.||+++-++..+-|.+.--+|++|| ++..+. . ++.+ .+.+++.+.|+.+
T Consensus 56 ~p~l~~l~~~~~~-v~~~~vd~d~~~~l~~~~~v~~~Pt~~i~-~~G~~~-~-------~~~G--~~~~~l~~~l~~~ 121 (125)
T 1r26_A 56 ERPMEKIAYEFPT-VKFAKVDADNNSEIVSKCRVLQLPTFIIA-RSGKML-G-------HVIG--ANPGMLRQKLRDI 121 (125)
T ss_dssp HHHHHHHHHHCTT-SEEEEEETTTCHHHHHHTTCCSSSEEEEE-ETTEEE-E-------EEES--SCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCC-CEEEEEECCCCHHHHHHcCCCcccEEEEE-eCCeEE-E-------EEeC--CCHHHHHHHHHHH
Confidence 4567777877766 67789999999999999999766676555 443321 1 3334 2557787777764
No 20
>3die_A Thioredoxin, TRX; electron transport, SWAP domain, redox enzymology, oxidoreductase, redox-active center, transport; 1.85A {Staphylococcus aureus} SCOP: c.47.1.1 PDB: 2o7k_A 2o85_A 2o89_A 2o87_A
Probab=94.00 E-value=0.31 Score=29.03 Aligned_cols=66 Identities=20% Similarity=0.324 Sum_probs=45.2
Q ss_pred hhHHHHhHHhhhcceEEEEEeCCCccchhhhccccCcceEEEEeeCceeEEecCCCCCceEEeecCChhHHHHHHH
Q 034174 2 DEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVE 77 (102)
Q Consensus 2 DevL~~~a~~v~~~a~IY~vDi~~Vpdfn~myeL~dP~tvMFFfrnkHm~vD~GTgnnnKin~~~~~kqefIDiie 77 (102)
...|.+++++.++-..++.+|+++-|+..+.|.+..-+|+++|-+++.+.- +.+ ..+.+++...++
T Consensus 38 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~G~~~~~---------~~g-~~~~~~l~~~l~ 103 (106)
T 3die_A 38 APVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDK---------VVG-FQPKENLAEVLD 103 (106)
T ss_dssp HHHHHHHHHHTTTTCEEEEEETTTCHHHHHHTTCCSBSEEEEEETTEEEEE---------EES-CCCHHHHHHHHH
T ss_pred hHHHHHHHHHhcCCcEEEEEECCcCHHHHHhCCCcccCEEEEEeCCeEEEE---------EeC-CCCHHHHHHHHH
Confidence 356778888887667889999999999999999976567656643443321 111 234567766665
No 21
>1syr_A Thioredoxin; SGPP, structural genomics, PSI, protein structure initiative structural genomics of pathogenic protozoa consortium; 2.95A {Plasmodium falciparum} SCOP: c.47.1.1
Probab=93.86 E-value=0.19 Score=31.11 Aligned_cols=64 Identities=17% Similarity=0.281 Sum_probs=43.1
Q ss_pred hHHHHhHHhhhcceEEEEEeCCCccchhhhccccCcceEEEEeeCceeEEecCCCCCceEEeecCChhHHHHHHHH
Q 034174 3 EVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVET 78 (102)
Q Consensus 3 evL~~~a~~v~~~a~IY~vDi~~Vpdfn~myeL~dP~tvMFFfrnkHm~vD~GTgnnnKin~~~~~kqefIDiie~ 78 (102)
..|.+++++.++ ..++.+|+++-+++.+-|.+..-+|+++| ++.-+ ++ ++.+. ++++|.+.++.
T Consensus 46 ~~l~~l~~~~~~-v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~-~~G~~-~~-------~~~G~--~~~~l~~~l~~ 109 (112)
T 1syr_A 46 PFYEECSKTYTK-MVFIKVDVDEVSEVTEKENITSMPTFKVY-KNGSS-VD-------TLLGA--NDSALKQLIEK 109 (112)
T ss_dssp HHHHHHHHHCTT-SEEEEEETTTTHHHHHHTTCCSSSEEEEE-ETTEE-EE-------EEESC--CHHHHHHHHHT
T ss_pred HHHHHHHHHcCC-CEEEEEECCCCHHHHHHcCCCcccEEEEE-ECCcE-EE-------EEeCC--CHHHHHHHHHH
Confidence 456777777766 67788999999999999999665576555 43222 11 23333 67888777764
No 22
>2yzu_A Thioredoxin; redox protein, electron transport, structural genomics; 1.90A {Thermus thermophilus} PDB: 2cvk_A
Probab=93.83 E-value=0.36 Score=28.68 Aligned_cols=67 Identities=16% Similarity=0.265 Sum_probs=44.9
Q ss_pred hHHHHhHHhhhcceEEEEEeCCCccchhhhccccCcceEEEEeeCceeEEecCCCCCceEEeecCChhHHHHHHHHH
Q 034174 3 EVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETV 79 (102)
Q Consensus 3 evL~~~a~~v~~~a~IY~vDi~~Vpdfn~myeL~dP~tvMFFfrnkHm~vD~GTgnnnKin~~~~~kqefIDiie~i 79 (102)
..|.+++++.+.-..++.+|+++-|++.+-|.+.--+|+++|-+++.+..- .+ ..+.+++.+.++..
T Consensus 38 ~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~---------~g-~~~~~~l~~~l~~~ 104 (109)
T 2yzu_A 38 PILEEIAKEYEGKLLVAKLDVDENPKTAMRYRVMSIPTVILFKDGQPVEVL---------VG-AQPKRNYQAKIEKH 104 (109)
T ss_dssp HHHHHHHHHTBTTBEEEEEETTTCHHHHHHTTCCSSSEEEEEETTEEEEEE---------ES-CCCHHHHHHHHHTT
T ss_pred HHHHHHHHHhhCceEEEEEECCCCHhHHHhCCCCcCCEEEEEeCCcEeeeE---------eC-CCCHHHHHHHHHHH
Confidence 456777877775578899999999999999999766676666334433221 22 23567777777643
No 23
>2oe3_A Thioredoxin-3; electron transport, alpha/beta sandwich, oxidized, dimer; 1.80A {Saccharomyces cerevisiae} PDB: 2oe1_A 2oe0_A
Probab=93.77 E-value=0.32 Score=30.70 Aligned_cols=64 Identities=16% Similarity=0.196 Sum_probs=43.6
Q ss_pred hhHHHHhHHhhhcceEEEEEeCCCccchhhhccccCcceEEEEeeCceeEEecCCCCCceEEeecCChhHHHHHHH
Q 034174 2 DEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVE 77 (102)
Q Consensus 2 DevL~~~a~~v~~~a~IY~vDi~~Vpdfn~myeL~dP~tvMFFfrnkHm~vD~GTgnnnKin~~~~~kqefIDiie 77 (102)
...|.+++++.++ ..++.+|+++-+++.+-|.+.--+|+++| ++-.+. .++.+.. ++++.+.|+
T Consensus 49 ~p~l~~~~~~~~~-v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~-~~G~~~--------~~~~G~~--~~~l~~~l~ 112 (114)
T 2oe3_A 49 QPHLTKLIQAYPD-VRFVKCDVDESPDIAKECEVTAMPTFVLG-KDGQLI--------GKIIGAN--PTALEKGIK 112 (114)
T ss_dssp HHHHHHHHHHCTT-SEEEEEETTTCHHHHHHTTCCSBSEEEEE-ETTEEE--------EEEESSC--HHHHHHHHH
T ss_pred HHHHHHHHHHCCC-CEEEEEECCCCHHHHHHCCCCcccEEEEE-eCCeEE--------EEEeCCC--HHHHHHHHH
Confidence 3467778887777 78899999999999999999765665555 443221 1233433 577766665
No 24
>1v98_A Thioredoxin; oxidoreductase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.82A {Thermus thermophilus}
Probab=93.53 E-value=0.51 Score=30.30 Aligned_cols=69 Identities=14% Similarity=0.212 Sum_probs=47.0
Q ss_pred hhHHHHhHHhhhcceEEEEEeCCCccchhhhccccCcceEEEEeeCceeEEecCCCCCceEEeecCChhHHHHHHHHHh
Q 034174 2 DEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVY 80 (102)
Q Consensus 2 DevL~~~a~~v~~~a~IY~vDi~~Vpdfn~myeL~dP~tvMFFfrnkHm~vD~GTgnnnKin~~~~~kqefIDiie~iy 80 (102)
...|.+++++.++=..++.||+++-+++.+-|.+..-+|+++|-+++-+. ++.+. .+.+++.+.|+.+-
T Consensus 69 ~~~l~~l~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~G~~~~---------~~~G~-~~~~~l~~~i~~~l 137 (140)
T 1v98_A 69 SPILEELARDHAGRLKVVKVNVDEHPGLAARYGVRSVPTLVLFRRGAPVA---------TWVGA-SPRRVLEERLRPYL 137 (140)
T ss_dssp HHHHHHHHHHTTTTEEEEEEETTTCHHHHHHTTCCSSSEEEEEETTEEEE---------EEESC-CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCceEEEEEECCCCHHHHHHCCCCccCEEEEEeCCcEEE---------EEeCC-CCHHHHHHHHHHHH
Confidence 34677788877744788999999999999999997666765553333322 22222 34678888887654
No 25
>1fb6_A Thioredoxin M; electron transport; 2.10A {Spinacia oleracea} SCOP: c.47.1.1 PDB: 1fb0_A 1gl8_A 2puk_C
Probab=93.48 E-value=0.45 Score=28.28 Aligned_cols=67 Identities=24% Similarity=0.355 Sum_probs=44.5
Q ss_pred hhHHHHhHHhhhcceEEEEEeCCCccchhhhccccCcceEEEEeeCceeEEecCCCCCceEEeecCChhHHHHHHHH
Q 034174 2 DEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVET 78 (102)
Q Consensus 2 DevL~~~a~~v~~~a~IY~vDi~~Vpdfn~myeL~dP~tvMFFfrnkHm~vD~GTgnnnKin~~~~~kqefIDiie~ 78 (102)
...|.+++++.+.-..++.+|+++-|++.+-|.+.--+|+++|-+++-+. ++.+. .+.+++.+.++.
T Consensus 37 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~---------~~~G~-~~~~~l~~~l~~ 103 (105)
T 1fb6_A 37 APVIDELAKEYSGKIAVYKLNTDEAPGIATQYNIRSIPTVLFFKNGERKE---------SIIGA-VPKSTLTDSIEK 103 (105)
T ss_dssp HHHHHHHHHHTTTTCEEEEEETTTCHHHHHHTTCCSSSEEEEEETTEEEE---------EEEEC-CCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCceEEEEEcCcchHHHHHhCCCCcccEEEEEeCCeEEE---------EEecC-CCHHHHHHHHHh
Confidence 34577788877655778999999999999999997655765553333322 22222 345677777764
No 26
>1thx_A Thioredoxin, thioredoxin 2; oxido-reductase, electron transport; 1.60A {Nostoc SP} SCOP: c.47.1.1
Probab=93.35 E-value=0.57 Score=28.25 Aligned_cols=67 Identities=12% Similarity=0.221 Sum_probs=45.9
Q ss_pred hHHHHhHHhhhcceEEEEEeCCCccchhhhccccCcceEEEEeeCceeEEecCCCCCceEEeecCChhHHHHHHHHH
Q 034174 3 EVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETV 79 (102)
Q Consensus 3 evL~~~a~~v~~~a~IY~vDi~~Vpdfn~myeL~dP~tvMFFfrnkHm~vD~GTgnnnKin~~~~~kqefIDiie~i 79 (102)
..|.+++++.+.-..++.+|+++-+++.+-|.+.--+|+++| ++..+.-. +.+ ..+.+++.+.++.+
T Consensus 45 ~~l~~~~~~~~~~v~~~~v~~~~~~~~~~~~~v~~~Pt~~~~-~~G~~~~~--------~~g-~~~~~~l~~~l~~~ 111 (115)
T 1thx_A 45 PLINLAANTYSDRLKVVKLEIDPNPTTVKKYKVEGVPALRLV-KGEQILDS--------TEG-VISKDKLLSFLDTH 111 (115)
T ss_dssp HHHHHHHHHTTTTCEEEEEESTTCHHHHHHTTCCSSSEEEEE-ETTEEEEE--------EES-CCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcEEEEEEEcCCCHHHHHHcCCCceeEEEEE-cCCEEEEE--------ecC-CCCHHHHHHHHHHH
Confidence 456777777764478899999999999999999766676565 54333211 122 23568888888765
No 27
>3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural genomics, center for structural genomics of infec diseases, csgid; 2.19A {Yersinia pestis}
Probab=93.22 E-value=0.47 Score=30.74 Aligned_cols=70 Identities=17% Similarity=0.300 Sum_probs=48.1
Q ss_pred hhHHHHhHHhhhcceEEEEEeCCCccchhhhccccCcceEEEEeeCceeEEecCCCCCceEEeecCChhHHHHHHHHHhh
Q 034174 2 DEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVYR 81 (102)
Q Consensus 2 DevL~~~a~~v~~~a~IY~vDi~~Vpdfn~myeL~dP~tvMFFfrnkHm~vD~GTgnnnKin~~~~~kqefIDiie~iyr 81 (102)
...|.+++++.+.=..++.||.++-+++.+-|.+..-+|++|| ++-.+. +--+| ..+.++|.+.|+..-.
T Consensus 74 ~p~l~~~~~~~~~~~~~~~vd~~~~~~l~~~~~v~~~Pt~~~~-~~G~~~-~~~~G--------~~~~~~l~~~l~~~l~ 143 (148)
T 3p2a_A 74 APIFAETAAERAGKVRFVKVNTEAEPALSTRFRIRSIPTIMLY-RNGKMI-DMLNG--------AVPKAPFDNWLDEQLS 143 (148)
T ss_dssp HHHHHHHHHHTTTTCEEEEEETTTCHHHHHHTTCCSSSEEEEE-ETTEEE-EEESS--------CCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCceEEEEEECcCCHHHHHHCCCCccCEEEEE-ECCeEE-EEEeC--------CCCHHHHHHHHHHHhc
Confidence 3567788888765578889999999999999999776676565 433322 22222 2456888888876543
No 28
>1t00_A Thioredoxin, TRX; redox regulation, multifunction macromolecule, electron transport; 1.51A {Streptomyces coelicolor}
Probab=93.04 E-value=0.48 Score=28.77 Aligned_cols=67 Identities=19% Similarity=0.191 Sum_probs=44.8
Q ss_pred hHHHHhHHhhhcceEEEEEeCCCccchhhhccccCcceEEEEeeCceeEEecCCCCCceEEeecCChhHHHHHHHHH
Q 034174 3 EVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETV 79 (102)
Q Consensus 3 evL~~~a~~v~~~a~IY~vDi~~Vpdfn~myeL~dP~tvMFFfrnkHm~vD~GTgnnnKin~~~~~kqefIDiie~i 79 (102)
..|.+++++.+.-..++.+|+++-++..+-|.+.--+|+++|-+++-+. ++.+. .+++++.+.++.+
T Consensus 43 ~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~G~~~~---------~~~G~-~~~~~l~~~l~~~ 109 (112)
T 1t00_A 43 PSLEAIAAEYGDKIEIVKLNIDENPGTAAKYGVMSIPTLNVYQGGEVAK---------TIVGA-KPKAAIVRDLEDF 109 (112)
T ss_dssp HHHHHHHHHTTTTCEEEEEETTTCHHHHHHTTCCSSSEEEEEETTEEEE---------EEESC-CCHHHHHHHTHHH
T ss_pred HHHHHHHHHhcCCeEEEEEEcCCCHHHHHhCCCCcccEEEEEeCCEEEE---------EEeCC-CCHHHHHHHHHHH
Confidence 4567777777555788999999999999999997656765553333221 22222 3467777777654
No 29
>3aps_A DNAJ homolog subfamily C member 10; thioredoxin fold, CXXC motif, endoplasmic reticulum, oxidore; 1.90A {Mus musculus}
Probab=93.01 E-value=0.47 Score=29.37 Aligned_cols=74 Identities=12% Similarity=0.065 Sum_probs=51.8
Q ss_pred hhHHHHhHHhhhcceEEEEEeCCCccchhhhccccCcceEEEEeeCceeEEecCCCCCceEEee---cCChhHHHHHHHH
Q 034174 2 DEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWA---LKDKQEFIDIVET 78 (102)
Q Consensus 2 DevL~~~a~~v~~~a~IY~vDi~~Vpdfn~myeL~dP~tvMFFfrnkHm~vD~GTgnnnKin~~---~~~kqefIDiie~ 78 (102)
...|.+++++.+.-..++.||+++-+++.+-|.+.--+|+++|-+++. -.++.+. -.+.+++.+.++.
T Consensus 40 ~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~~~---------~~~~~g~~~~~~~~~~l~~~l~~ 110 (122)
T 3aps_A 40 APEFELLARMIKGKVRAGKVDCQAYPQTCQKAGIKAYPSVKLYQYERA---------KKSIWEEQINSRDAKTIAALIYG 110 (122)
T ss_dssp HHHHHHHHHHHTTTCEEEEEETTTCHHHHHHTTCCSSSEEEEEEEEGG---------GTEEEEEEECCSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCeEEEEEeCcCCHHHHHHcCCCccceEEEEeCCCc---------cceeeccccCcCCHHHHHHHHHH
Confidence 346777888877557789999999999999999976667655533332 1234443 2577899999988
Q ss_pred Hhhccc
Q 034174 79 VYRGAR 84 (102)
Q Consensus 79 iyrgA~ 84 (102)
.-..+.
T Consensus 111 ~l~~~~ 116 (122)
T 3aps_A 111 KLETLQ 116 (122)
T ss_dssp HHHCC-
T ss_pred HHHhhh
Confidence 876553
No 30
>1dby_A Chloroplast thioredoxin M CH2; thioredoxin CH2, chloroplastic thioredoxin, oxidoreductase; NMR {Chlamydomonas reinhardtii} SCOP: c.47.1.1
Probab=92.99 E-value=0.55 Score=28.19 Aligned_cols=67 Identities=21% Similarity=0.235 Sum_probs=44.3
Q ss_pred hHHHHhHHhhhcceEEEEEeCCCccchhhhccccCcceEEEEeeCceeEEecCCCCCceEEeecCChhHHHHHHHHH
Q 034174 3 EVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETV 79 (102)
Q Consensus 3 evL~~~a~~v~~~a~IY~vDi~~Vpdfn~myeL~dP~tvMFFfrnkHm~vD~GTgnnnKin~~~~~kqefIDiie~i 79 (102)
..|.+++++.+.-..++.+|.++-|++.+-|.+.--+|+++|-+++.+. ++.+ ..+++++.+.++.+
T Consensus 39 ~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~G~~~~---------~~~G-~~~~~~l~~~l~~~ 105 (107)
T 1dby_A 39 PVVDEIAGEYKDKLKCVKLNTDESPNVASEYGIRSIPTIMVFKGGKKCE---------TIIG-AVPKATIVQTVEKY 105 (107)
T ss_dssp HHHHHHHHHTTTTCEEEEEETTTCHHHHHHHTCCSSCEEEEESSSSEEE---------EEES-CCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCceEEEEEECCCCHHHHHHCCCCcCCEEEEEeCCEEEE---------EEeC-CCCHHHHHHHHHHH
Confidence 4567777777655778899999999999999997656655553333322 1222 23457777777654
No 31
>3hxs_A Thioredoxin, TRXP; electron transport; 2.00A {Bacteroides fragilis} PDB: 3hyp_A
Probab=92.93 E-value=0.37 Score=30.68 Aligned_cols=67 Identities=13% Similarity=0.226 Sum_probs=46.8
Q ss_pred hHHHHhHHhhhcceEEEEEeCCCccchhhhccccCcceEEEEeeCceeEEecCCCCCceEEeecCChhHHHHHHHHH
Q 034174 3 EVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETV 79 (102)
Q Consensus 3 evL~~~a~~v~~~a~IY~vDi~~Vpdfn~myeL~dP~tvMFFfrnkHm~vD~GTgnnnKin~~~~~kqefIDiie~i 79 (102)
..|.+++++.+.-..++.||+++-+++.+-|.+.--+|++||-++..+.. ..+ ..+.+++.+.|+.+
T Consensus 71 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~~g~~~~---------~~G-~~~~~~l~~~l~~~ 137 (141)
T 3hxs_A 71 PILEELSKEYAGKIYIYKVNVDKEPELARDFGIQSIPTIWFVPMKGEPQV---------NMG-ALSKEQLKGYIDKV 137 (141)
T ss_dssp HHHHHHHHHTTTTCEEEEEETTTCHHHHHHTTCCSSSEEEEECSSSCCEE---------EES-CCCHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCceEEEEEECCCCHHHHHHcCCCCcCEEEEEeCCCCEEE---------EeC-CCCHHHHHHHHHHH
Confidence 46778888887667889999999999999999977667555534433321 122 23567888777754
No 32
>2o8v_B Thioredoxin 1; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli}
Probab=92.78 E-value=1.2 Score=28.60 Aligned_cols=68 Identities=13% Similarity=0.256 Sum_probs=46.0
Q ss_pred hhHHHHhHHhhhcceEEEEEeCCCccchhhhccccCcceEEEEeeCceeEEecCCCCCceEEeecCChhHHHHHHHHH
Q 034174 2 DEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETV 79 (102)
Q Consensus 2 DevL~~~a~~v~~~a~IY~vDi~~Vpdfn~myeL~dP~tvMFFfrnkHm~vD~GTgnnnKin~~~~~kqefIDiie~i 79 (102)
...|.+++++.+.-..++.||+++-+++.+-|.+.--+|+++| ++.-+. . ++.+ ..+.+++.+.++.+
T Consensus 59 ~p~l~~l~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~-~~G~~~-~-------~~~G-~~~~~~l~~~l~~~ 126 (128)
T 2o8v_B 59 APILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLF-KNGEVA-A-------TKVG-ALSKGQLKEFLDAN 126 (128)
T ss_dssp HHHHHHHHHHTTTTEEEEEEETTTCCTTSGGGTCCSSSEEEEE-ETTEEE-E-------EEES-CCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHhcCCeEEEEEECCCCHHHHHHcCCCccCEEEEE-eCCEEE-E-------EEcC-CCCHHHHHHHHHHh
Confidence 4567788888775578899999999999999999765565555 543321 1 1222 23567888877653
No 33
>1ti3_A Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Populus tremula} SCOP: c.47.1.1
Probab=92.47 E-value=0.73 Score=27.78 Aligned_cols=66 Identities=18% Similarity=0.241 Sum_probs=43.7
Q ss_pred hHHHHhHHhhhcceEEEEEeCCCccchhhhccccCcceEEEEeeCceeEEecCCCCCceEEeecCChhHHHHHHHHHh
Q 034174 3 EVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVY 80 (102)
Q Consensus 3 evL~~~a~~v~~~a~IY~vDi~~Vpdfn~myeL~dP~tvMFFfrnkHm~vD~GTgnnnKin~~~~~kqefIDiie~iy 80 (102)
..|.+++++.++ ..++.+|+++-|++.+.|.+..-+|+++|-+++-+. ++.+ . +++++.+.++.+-
T Consensus 46 ~~l~~~~~~~~~-v~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~G~~~~---------~~~g-~-~~~~l~~~l~~~~ 111 (113)
T 1ti3_A 46 PIFAELAKKFPN-VTFLKVDVDELKAVAEEWNVEAMPTFIFLKDGKLVD---------KTVG-A-DKDGLPTLVAKHA 111 (113)
T ss_dssp HHHHHHHHHCSS-EEEEEEETTTCHHHHHHHHCSSTTEEEEEETTEEEE---------EEEC-C-CTTHHHHHHHHHH
T ss_pred HHHHHHHHhCCC-cEEEEEEccccHHHHHhCCCCcccEEEEEeCCEEEE---------EEec-C-CHHHHHHHHHHhh
Confidence 456667776554 677889999999999999997666765653333222 2233 1 4577888777653
No 34
>2vim_A Thioredoxin, TRX; thioredoxin fold, oxidoreductase; 1.38A {Fasciola hepatica}
Probab=92.46 E-value=0.29 Score=29.06 Aligned_cols=64 Identities=13% Similarity=0.222 Sum_probs=43.2
Q ss_pred hHHHHhHHhhhcceEEEEEeCCCccchhhhccccCcceEEEEeeCceeEEecCCCCCceEEeecCChhHHHHHHHH
Q 034174 3 EVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVET 78 (102)
Q Consensus 3 evL~~~a~~v~~~a~IY~vDi~~Vpdfn~myeL~dP~tvMFFfrnkHm~vD~GTgnnnKin~~~~~kqefIDiie~ 78 (102)
..|.+++++.++ ..++.+|+++-|++.+.|.+...+|+++|-+++.+. ++.+ . +.+++.+.++.
T Consensus 39 ~~l~~~~~~~~~-~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~---------~~~G-~-~~~~l~~~l~~ 102 (104)
T 2vim_A 39 PKVEALAKEIPE-VEFAKVDVDQNEEAAAKYSVTAMPTFVFIKDGKEVD---------RFSG-A-NETKLRETITR 102 (104)
T ss_dssp HHHHHHHHHCTT-SEEEEEETTTCHHHHHHTTCCSSSEEEEEETTEEEE---------EEES-S-CHHHHHHHHHH
T ss_pred HHHHHHHHHCCC-CEEEEEeccCCHHHHHHcCCccccEEEEEeCCcEEE---------EEeC-C-CHHHHHHHHHh
Confidence 456677776664 667889999999999999997766766654344332 2333 2 45677777664
No 35
>2dj0_A Thioredoxin-related transmembrane protein 2; AVLA237, CGI-31 protein, TXNDC14, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=92.40 E-value=0.53 Score=30.20 Aligned_cols=72 Identities=14% Similarity=0.122 Sum_probs=45.8
Q ss_pred hhHHHHhHHhhhc-ceEEEEEeCCCccchhhhcccc------CcceEEEEeeCceeEEecCCCCCceEEeecCChhHHH
Q 034174 2 DEVLSSVAETIKN-FAVIYLVDISEVPDFNTMYELY------DPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFI 73 (102)
Q Consensus 2 DevL~~~a~~v~~-~a~IY~vDi~~Vpdfn~myeL~------dP~tvMFFfrnkHm~vD~GTgnnnKin~~~~~kqefI 73 (102)
...|.+++++.+. -..++.||+++-|++.+-|.+. --+|++||-+++-+.-=.|.-+...+.=.+..+..++
T Consensus 45 ~p~~~~l~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~~~~~~~Pt~~~~~~G~~~~~~~G~~~~~~l~~~l~~~~~~~ 123 (137)
T 2dj0_A 45 APIYADLSLKYNCTGLNFGKVDVGRYTDVSTRYKVSTSPLTKQLPTLILFQGGKEAMRRPQIDKKGRAVSWTFSEENVI 123 (137)
T ss_dssp HHHHHHHHHHHCSSSCEEEECCTTTCHHHHHHTTCCCCSSSSCSSEEEEESSSSEEEEESCBCSSSCBCCCCCCHHHHH
T ss_pred HHHHHHHHHHhCCCCeEEEEEeCccCHHHHHHccCcccCCcCCCCEEEEEECCEEEEEecCcCchHHHHHHHhcccchh
Confidence 4567788888763 4677899999999999999996 5557666644444433334333344444455554443
No 36
>2dj1_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=92.30 E-value=0.98 Score=28.54 Aligned_cols=71 Identities=14% Similarity=0.285 Sum_probs=48.8
Q ss_pred hhHHHHhHHhhhcc---eEEEEEeCCCccchhhhccccCcceEEEEeeCceeEEecCCCCCceEEeecCChhHHHHHHHH
Q 034174 2 DEVLSSVAETIKNF---AVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVET 78 (102)
Q Consensus 2 DevL~~~a~~v~~~---a~IY~vDi~~Vpdfn~myeL~dP~tvMFFfrnkHm~vD~GTgnnnKin~~~~~kqefIDiie~ 78 (102)
...|.+++++.++- ..++.||+++-+++.+-|.+.--+|+++| ++..+ ..+ .| ..+.++|.+.++.
T Consensus 53 ~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~-~~G~~-~~~-~g--------~~~~~~l~~~l~~ 121 (140)
T 2dj1_A 53 APEYEKIASTLKDNDPPIAVAKIDATSASMLASKFDVSGYPTIKIL-KKGQA-VDY-DG--------SRTQEEIVAKVRE 121 (140)
T ss_dssp HHHHHHHHHHHHSSSSCCEEEEECTTTCHHHHHHTTCCSSSEEEEE-ETTEE-EEC-CS--------CCCHHHHHHHHHH
T ss_pred hHHHHHHHHHHhccCCceEEEEEeCcccHHHHHHCCCCccCeEEEE-ECCcE-EEc-CC--------CCCHHHHHHHHHH
Confidence 45677888887764 77889999999999999999765666566 43322 111 12 2356888888887
Q ss_pred Hhhcc
Q 034174 79 VYRGA 83 (102)
Q Consensus 79 iyrgA 83 (102)
.-..+
T Consensus 122 ~~~~~ 126 (140)
T 2dj1_A 122 VSQPD 126 (140)
T ss_dssp HHSSS
T ss_pred hcCCC
Confidence 65544
No 37
>1gh2_A Thioredoxin-like protein; redox-active center, electron transport; 2.22A {Homo sapiens} SCOP: c.47.1.1
Probab=92.06 E-value=0.33 Score=29.49 Aligned_cols=42 Identities=21% Similarity=0.289 Sum_probs=32.8
Q ss_pred hHHHHhHHhhhcceEEEEEeCCCccchhhhccccCcceEEEEe
Q 034174 3 EVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFF 45 (102)
Q Consensus 3 evL~~~a~~v~~~a~IY~vDi~~Vpdfn~myeL~dP~tvMFFf 45 (102)
..|.+++++.++ ..++.+|+++-|++.+.|.+.--+|++||-
T Consensus 41 ~~~~~~~~~~~~-~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~ 82 (107)
T 1gh2_A 41 PAFSSMSNKYPQ-AVFLEVDVHQCQGTAATNNISATPTFQFFR 82 (107)
T ss_dssp HHHHHHHHHCTT-SEEEEEETTTSHHHHHHTTCCSSSEEEEEE
T ss_pred HHHHHHHHHCCC-cEEEEEECccCHHHHHhcCCCcccEEEEEE
Confidence 456777777755 677899999999999999997656766663
No 38
>3d22_A TRXH4, thioredoxin H-type; electron transport, cytoplasm, redox-active center, transport, oxidoreductase; 1.60A {Populus trichocarpa x populusdeltoides} PDB: 3d21_A
Probab=91.96 E-value=0.66 Score=29.54 Aligned_cols=68 Identities=21% Similarity=0.417 Sum_probs=45.9
Q ss_pred hHHHHhHHhhhcceEEEEEeCCCccchhhhccccCcceEEEEeeCceeEEecCCCCCceEEeecCChhHHHHHHHHHhhc
Q 034174 3 EVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVYRG 82 (102)
Q Consensus 3 evL~~~a~~v~~~a~IY~vDi~~Vpdfn~myeL~dP~tvMFFfrnkHm~vD~GTgnnnKin~~~~~kqefIDiie~iyrg 82 (102)
..|.+++++.++ ..++.||+++-+++.+-|.+.--+|+++| ++..+. . ++.+. +.+++.+.++.+-.+
T Consensus 66 ~~l~~l~~~~~~-v~~~~v~~~~~~~~~~~~~v~~~Pt~~~~-~~G~~~-~-------~~~G~--~~~~l~~~l~~~~~~ 133 (139)
T 3d22_A 66 PYYIELSENYPS-LMFLVIDVDELSDFSASWEIKATPTFFFL-RDGQQV-D-------KLVGA--NKPELHKKITAILDS 133 (139)
T ss_dssp HHHHHHHHHCTT-SEEEEEETTTSHHHHHHTTCCEESEEEEE-ETTEEE-E-------EEESC--CHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCCC-CEEEEEeCcccHHHHHHcCCCcccEEEEE-cCCeEE-E-------EEeCC--CHHHHHHHHHHHhcc
Confidence 356677776655 56788999999999999999655565555 543332 1 23333 568888888876654
No 39
>1w4v_A Thioredoxin, mitochondrial; antioxidant enzyme, mitochondrion, electron TRA oxidoreductase; 1.80A {Homo sapiens} PDB: 1uvz_A 1w89_A
Probab=91.94 E-value=0.97 Score=28.26 Aligned_cols=68 Identities=22% Similarity=0.338 Sum_probs=45.0
Q ss_pred hhHHHHhHHhhhcceEEEEEeCCCccchhhhccccCcceEEEEeeCceeEEecCCCCCceEEeecCChhHHHHHHHHH
Q 034174 2 DEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETV 79 (102)
Q Consensus 2 DevL~~~a~~v~~~a~IY~vDi~~Vpdfn~myeL~dP~tvMFFfrnkHm~vD~GTgnnnKin~~~~~kqefIDiie~i 79 (102)
...|.+++++.+.-..++.+|+++-+++.+-|.+.--+|+++| ++..+. . ++.+ ..+.+++.+.++.+
T Consensus 50 ~~~l~~~~~~~~~~v~~~~vd~d~~~~l~~~~~v~~~Pt~~~~-~~G~~~-~-------~~~G-~~~~~~l~~~l~~~ 117 (119)
T 1w4v_A 50 GPRLEKMVAKQHGKVVMAKVDIDDHTDLAIEYEVSAVPTVLAM-KNGDVV-D-------KFVG-IKDEDQLEAFLKKL 117 (119)
T ss_dssp HHHHHHHHHHTTTSSEEEEEETTTTHHHHHHTTCCSSSEEEEE-ETTEEE-E-------EEES-CCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCeEEEEEeCCCCHHHHHHcCCCcccEEEEE-eCCcEE-E-------EEcC-CCCHHHHHHHHHHH
Confidence 3456777777765578899999999999999999765666555 543332 1 1222 22567788777654
No 40
>3uvt_A Thioredoxin domain-containing protein 5; thioredoxin-like fold, isomerase; 2.00A {Homo sapiens} PDB: 2diz_A 3uj1_A
Probab=91.91 E-value=0.73 Score=27.59 Aligned_cols=65 Identities=15% Similarity=0.140 Sum_probs=41.6
Q ss_pred hHHHHhHHhhh---cceEEEEEeCCCccchhhhccccCcceEEEEeeCceeEEecCCCCCceEEeecCChhHHHHHHH
Q 034174 3 EVLSSVAETIK---NFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVE 77 (102)
Q Consensus 3 evL~~~a~~v~---~~a~IY~vDi~~Vpdfn~myeL~dP~tvMFFfrnkHm~vD~GTgnnnKin~~~~~kqefIDiie 77 (102)
..|.+++++.+ .-..++.+|.++-+++.+-|.+.--+|+++|-+++.+.- -+| ..+.+++.+.++
T Consensus 41 ~~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~g~~~~~--~~g--------~~~~~~l~~~l~ 108 (111)
T 3uvt_A 41 PTWEELSKKEFPGLAGVKIAEVDCTAERNICSKYSVRGYPTLLLFRGGKKVSE--HSG--------GRDLDSLHRFVL 108 (111)
T ss_dssp HHHHHHHTCCCCC-CCEEEEEEETTTCHHHHHHTTCCSSSEEEEEETTEEEEE--ECS--------CCSHHHHHHHHH
T ss_pred HHHHHHHHHhhccCCceEEEEEeccccHhHHHhcCCCcccEEEEEeCCcEEEe--ccC--------CcCHHHHHHHHH
Confidence 45666666543 246778999999999999999976557666644443321 222 134566666654
No 41
>3ul3_B Thioredoxin, thioredoxin-2; PTEX, oxidoreductase; 2.90A {Plasmodium falciparum}
Probab=91.06 E-value=0.52 Score=29.93 Aligned_cols=47 Identities=6% Similarity=0.154 Sum_probs=36.7
Q ss_pred hhHHHHhHHhhhcceEEEEEeCCCccchhhhccccCcceEEEEeeCc
Q 034174 2 DEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNK 48 (102)
Q Consensus 2 DevL~~~a~~v~~~a~IY~vDi~~Vpdfn~myeL~dP~tvMFFfrnk 48 (102)
...|.+++++.+.-..++.||+++-++..+-|.+.--+|+++|-+++
T Consensus 61 ~p~l~~~~~~~~~~v~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~ 107 (128)
T 3ul3_B 61 STEMDKLQKYYGKRIYLLKVDLDKNESLARKFSVKSLPTIILLKNKT 107 (128)
T ss_dssp HHHHHHHHHHHGGGEEEEEEEGGGCHHHHHHTTCCSSSEEEEEETTE
T ss_pred hHHHHHHHHHhcCCeEEEEEECCCCHHHHHHcCCCCcCEEEEEECCE
Confidence 34677888888766888999999999999999997766766663343
No 42
>2ppt_A Thioredoxin-2; thiredoxin, zinc finger, oxidoreductase; 1.92A {Rhodobacter capsulatus}
Probab=91.04 E-value=1.2 Score=29.77 Aligned_cols=68 Identities=12% Similarity=0.174 Sum_probs=46.8
Q ss_pred hhHHHHhHHhhhcceEEEEEeCCCccchhhhccccCcceEEEEeeCceeEEecCCCCCceEEeecCChhHHHHHHHHH
Q 034174 2 DEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETV 79 (102)
Q Consensus 2 DevL~~~a~~v~~~a~IY~vDi~~Vpdfn~myeL~dP~tvMFFfrnkHm~vD~GTgnnnKin~~~~~kqefIDiie~i 79 (102)
...|.+++++.+.=..++.||+++-|+..+-|.+.--+|+++| ++-.+. + ++.+. .+++++.+.++..
T Consensus 83 ~p~l~~la~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~-~~G~~~-~-------~~~G~-~~~~~l~~~l~~~ 150 (155)
T 2ppt_A 83 APQFQAAAATLAGQVRLAKIDTQAHPAVAGRHRIQGIPAFILF-HKGREL-A-------RAAGA-RPASELVGFVRGK 150 (155)
T ss_dssp HHHHHHHHHHHTTTCEEEEEETTTSTHHHHHTTCCSSSEEEEE-ETTEEE-E-------EEESC-CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCEEEEEEeCCccHHHHHHcCCCcCCEEEEE-eCCeEE-E-------EecCC-CCHHHHHHHHHHH
Confidence 3467788888774578899999999999999999766676665 543331 1 22222 3567888887764
No 43
>2dml_A Protein disulfide-isomerase A6; thioredoxin domain-containing protein 7, endoplasmic reticulum, redox-active center, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=90.89 E-value=0.31 Score=30.54 Aligned_cols=70 Identities=13% Similarity=0.130 Sum_probs=46.9
Q ss_pred hhHHHHhHHhhhcceEEEEEeCCCccchhhhccccCcceEEEEeeCceeEEecCCCCCceEEeecCChhHHHHHHHHHh
Q 034174 2 DEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVY 80 (102)
Q Consensus 2 DevL~~~a~~v~~~a~IY~vDi~~Vpdfn~myeL~dP~tvMFFfrnkHm~vD~GTgnnnKin~~~~~kqefIDiie~iy 80 (102)
...|.+++++.++-..++.||+++-+++.+-|.+.--+|++||-+++.+. .++.+ ..+.+++++.++..-
T Consensus 54 ~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~~~~~~--------~~~~G-~~~~~~l~~~l~~~l 123 (130)
T 2dml_A 54 TPEWKKAATALKDVVKVGAVNADKHQSLGGQYGVQGFPTIKIFGANKNKP--------EDYQG-GRTGEAIVDAALSAL 123 (130)
T ss_dssp HHHHHHHHHHTTTTSEEEEEETTTCHHHHHHHTCCSSSEEEEESSCTTSC--------EECCS-CCSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCceEEEEEeCCCCHHHHHHcCCCccCEEEEEeCCCCeE--------EEeec-CCCHHHHHHHHHHHH
Confidence 34677888888877888999999999999999997666755554333211 12222 235577777666543
No 44
>1x5d_A Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC7, thioredoxin like domain, redox, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=90.71 E-value=1.9 Score=26.78 Aligned_cols=70 Identities=11% Similarity=0.134 Sum_probs=47.4
Q ss_pred hHHHHhHHhhh----cceEEEEEeCCCccchhhhccccCcceEEEEeeCceeEEecCCCCCceEEeecCChhHHHHHHHH
Q 034174 3 EVLSSVAETIK----NFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVET 78 (102)
Q Consensus 3 evL~~~a~~v~----~~a~IY~vDi~~Vpdfn~myeL~dP~tvMFFfrnkHm~vD~GTgnnnKin~~~~~kqefIDiie~ 78 (102)
..|.+++++.+ .-..++.||+++-+++.+-|.+.--+|+++|-+++. +.--.| ..+.+++...++.
T Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~g~~--~~~~~G--------~~~~~~l~~~l~~ 114 (133)
T 1x5d_A 45 PEWAAAASEVKEQTKGKVKLAAVDATVNQVLASRYGIRGFPTIKIFQKGES--PVDYDG--------GRTRSDIVSRALD 114 (133)
T ss_dssp HHHHHHHHHHHHHTTTSEEEEEEETTTCCHHHHHHTCCSSSEEEEEETTEE--EEEECS--------CCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCCcEEEEEEECCCCHHHHHhCCCCeeCeEEEEeCCCc--eEEecC--------CCCHHHHHHHHHH
Confidence 45677788776 457889999999999999999976566555544442 221122 2356888888877
Q ss_pred Hhhc
Q 034174 79 VYRG 82 (102)
Q Consensus 79 iyrg 82 (102)
....
T Consensus 115 ~~~~ 118 (133)
T 1x5d_A 115 LFSD 118 (133)
T ss_dssp HHHH
T ss_pred Hhhc
Confidence 6544
No 45
>1mek_A Protein disulfide isomerase; electron transport, redox-active center, endoplasmic reticulum; NMR {Homo sapiens} SCOP: c.47.1.2
Probab=90.23 E-value=0.68 Score=27.91 Aligned_cols=70 Identities=14% Similarity=0.180 Sum_probs=44.1
Q ss_pred hhHHHHhHHhhhc---ceEEEEEeCCCccchhhhccccCcceEEEEeeCceeEEecCCCCCceEEeecCChhHHHHHHHH
Q 034174 2 DEVLSSVAETIKN---FAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVET 78 (102)
Q Consensus 2 DevL~~~a~~v~~---~a~IY~vDi~~Vpdfn~myeL~dP~tvMFFfrnkHm~vD~GTgnnnKin~~~~~kqefIDiie~ 78 (102)
...+.+++++.+. -..++.+|.++-+++.+.|.+.--+|++||-+++-+.-. ++.+ ..+.+++...++.
T Consensus 43 ~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~-------~~~g-~~~~~~l~~~l~~ 114 (120)
T 1mek_A 43 APEYAKAAGKLKAEGSEIRLAKVDATEESDLAQQYGVRGYPTIKFFRNGDTASPK-------EYTA-GREADDIVNWLKK 114 (120)
T ss_dssp HHHHHHHHHTTTTTCCCCBCEEEETTTCCSSHHHHTCCSSSEEEEEESSCSSSCE-------ECCC-CSSHHHHHHHHHT
T ss_pred hHHHHHHHHHHhccCCcEEEEEEcCCCCHHHHHHCCCCcccEEEEEeCCCcCCcc-------cccC-ccCHHHHHHHHHh
Confidence 4567777777652 356788999999999999999766676666333322001 1122 3356777777764
Q ss_pred H
Q 034174 79 V 79 (102)
Q Consensus 79 i 79 (102)
.
T Consensus 115 ~ 115 (120)
T 1mek_A 115 R 115 (120)
T ss_dssp T
T ss_pred c
Confidence 3
No 46
>2l57_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, PSI protein structure initiative; NMR {Clostridium perfringens}
Probab=90.15 E-value=1.2 Score=27.82 Aligned_cols=75 Identities=16% Similarity=0.098 Sum_probs=48.9
Q ss_pred hHHHHhHHhhhcceEEEEEe--CCCccchhhhccccCcceEEEEeeCceeEEecCCCCCceEEeecCChhHHHHHHHHHh
Q 034174 3 EVLSSVAETIKNFAVIYLVD--ISEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVY 80 (102)
Q Consensus 3 evL~~~a~~v~~~a~IY~vD--i~~Vpdfn~myeL~dP~tvMFFfrnkHm~vD~GTgnnnKin~~~~~kqefIDiie~iy 80 (102)
..|.+++++.+.=..++.+| +++-+++.+.|.+.--+|+++|-++..+. .++.+ ..++++|.+.++...
T Consensus 46 ~~l~~~~~~~~~~v~~~~v~~~~d~~~~~~~~~~v~~~Pt~~~~~~~G~~~--------~~~~G-~~~~~~l~~~l~~~~ 116 (126)
T 2l57_A 46 KELSYVSKEREGKFNIYYARLEEEKNIDLAYKYDANIVPTTVFLDKEGNKF--------YVHQG-LMRKNNIETILNSLG 116 (126)
T ss_dssp HHHHHHHHHSSSSCEEEEEETTSSHHHHHHHHTTCCSSSEEEEECTTCCEE--------EEEES-CCCHHHHHHHHHHHC
T ss_pred HHHHHHHHHhcCCeEEEEEeCCCCchHHHHHHcCCcceeEEEEECCCCCEE--------EEecC-CCCHHHHHHHHHHHh
Confidence 45677777775456788999 99999999999987655644442121111 11222 346789999999887
Q ss_pred hccccC
Q 034174 81 RGARKG 86 (102)
Q Consensus 81 rgA~kG 86 (102)
.....|
T Consensus 117 ~~~~~~ 122 (126)
T 2l57_A 117 VKEGHH 122 (126)
T ss_dssp CCCCCC
T ss_pred cccccc
Confidence 666544
No 47
>2qsi_A Putative hydrogenase expression/formation protein; HUPG, MCS SAD, structural genomics, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=90.09 E-value=0.36 Score=34.00 Aligned_cols=68 Identities=9% Similarity=0.063 Sum_probs=51.5
Q ss_pred hHHHHhHHhhhcceEEEEEeCCCccchhhhccccCcceEEEEeeCceeEEecCCCCCceEEeecCChhHHHHHHHHHh
Q 034174 3 EVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVY 80 (102)
Q Consensus 3 evL~~~a~~v~~~a~IY~vDi~~Vpdfn~myeL~dP~tvMFFfrnkHm~vD~GTgnnnKin~~~~~kqefIDiie~iy 80 (102)
=+|.+++++...=..|+-||+++-|+.-.-|.+..=+|++||=+++-+. ++.++ .+|+++.+.|+.+-
T Consensus 55 Pvleela~e~~~~v~~~KVdvDe~~~la~~ygV~siPTlilFkdG~~v~---------~~vG~-~~k~~l~~~l~~~l 122 (137)
T 2qsi_A 55 VVLPELINAFPGRLVAAEVAAEAERGLMARFGVAVCPSLAVVQPERTLG---------VIAKI-QDWSSYLAQIGAML 122 (137)
T ss_dssp HHHHHHHHTSTTTEEEEEECGGGHHHHHHHHTCCSSSEEEEEECCEEEE---------EEESC-CCHHHHHHHHHHHH
T ss_pred hHHHHHHHHccCCcEEEEEECCCCHHHHHHcCCccCCEEEEEECCEEEE---------EEeCC-CCHHHHHHHHHHHh
Confidence 3677888887766789999999999999999998888988886665542 44443 45677777777544
No 48
>3h79_A Thioredoxin-like protein; thioredoxin fold, catalytic cysteines missing, unknown funct; 1.50A {Trypanosoma cruzi} SCOP: c.47.1.0
Probab=89.58 E-value=1.3 Score=27.86 Aligned_cols=68 Identities=10% Similarity=-0.026 Sum_probs=43.4
Q ss_pred hHHHHhHHhhh-----cceEEEEEeCCCccchhhhccccCcceEEEEeeCceeEEecCCCCCceEEeecCChhHHHHHHH
Q 034174 3 EVLSSVAETIK-----NFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVE 77 (102)
Q Consensus 3 evL~~~a~~v~-----~~a~IY~vDi~~Vpdfn~myeL~dP~tvMFFfrnkHm~vD~GTgnnnKin~~~~~kqefIDiie 77 (102)
..+.++|++.+ .-..++.||.++-+++.+-|.+.--+|+++|-+++.+.. .+..+ ..+.+++.+.|+
T Consensus 53 p~~~~la~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~g~~~~~-------~~~~G-~~~~~~l~~~i~ 124 (127)
T 3h79_A 53 RLWDDLSMSQSQKRNHLTFVAARIDGEKYPDVIERMRVSGFPTMRYYTRIDKQEP-------FEYSG-QRYLSLVDSFVF 124 (127)
T ss_dssp HHHHHHHHHHHTSTTTTTEEEEEEETTTCHHHHHHTTCCSSSEEEEECSSCSSSC-------EECCS-CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCCeEEEEEEccccHhHHHhcCCccCCEEEEEeCCCCCCc-------eEecC-CccHHHHHHHHH
Confidence 35666666543 347789999999999999999987778666654433210 11222 245677766665
Q ss_pred H
Q 034174 78 T 78 (102)
Q Consensus 78 ~ 78 (102)
.
T Consensus 125 ~ 125 (127)
T 3h79_A 125 Q 125 (127)
T ss_dssp H
T ss_pred h
Confidence 3
No 49
>2i1u_A Thioredoxin, TRX, MPT46; redox protein, electron transport; 1.30A {Mycobacterium tuberculosis} PDB: 3nof_A 3o6t_A* 2l4q_A 2l59_A
Probab=89.48 E-value=0.91 Score=27.78 Aligned_cols=47 Identities=15% Similarity=0.258 Sum_probs=34.8
Q ss_pred hhHHHHhHHhhhcceEEEEEeCCCccchhhhccccCcceEEEEeeCc
Q 034174 2 DEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNK 48 (102)
Q Consensus 2 DevL~~~a~~v~~~a~IY~vDi~~Vpdfn~myeL~dP~tvMFFfrnk 48 (102)
...|.+++++.++=..++.+|+++-|++.+-|.+.--+|+++|-+++
T Consensus 49 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~g~ 95 (121)
T 2i1u_A 49 APVLEEIATERATDLTVAKLDVDTNPETARNFQVVSIPTLILFKDGQ 95 (121)
T ss_dssp HHHHHHHHHHTTTTCEEEEEETTTCHHHHHHTTCCSSSEEEEEETTE
T ss_pred HHHHHHHHHHhcCCeEEEEEECCCCHHHHHhcCCCcCCEEEEEECCE
Confidence 34577788877655778999999999999999997656765553333
No 50
>3fk8_A Disulphide isomerase; APC61824.1, xylella fastidiosa temecul structural genomics, PSI-2, protein structure initiative; 1.30A {Xylella fastidiosa}
Probab=89.37 E-value=1.3 Score=27.88 Aligned_cols=73 Identities=14% Similarity=0.104 Sum_probs=45.2
Q ss_pred HHH--HhHHhhhcceEEEEEeC---CCccchhhhccc---cCcceEEEE-eeCceeEEecCCCCCceEEeecCChhHHHH
Q 034174 4 VLS--SVAETIKNFAVIYLVDI---SEVPDFNTMYEL---YDPSTVMFF-FRNKHIMIDLGTGNNNKINWALKDKQEFID 74 (102)
Q Consensus 4 vL~--~~a~~v~~~a~IY~vDi---~~Vpdfn~myeL---~dP~tvMFF-frnkHm~vD~GTgnnnKin~~~~~kqefID 74 (102)
.|. +++++.++-..++.||+ ++-+++.+-|.+ .--+|++|| -+++-+.--.|..-.+. ...+.+++.+
T Consensus 50 ~l~~~~~~~~~~~~~~~~~vd~~~~~~~~~l~~~~~v~~~~~~Pt~~~~d~~G~~~~~~~g~~~~~~---~~~~~~~l~~ 126 (133)
T 3fk8_A 50 SLRNQKNTALIAKHFEVVKIDVGNFDRNLELSQAYGDPIQDGIPAVVVVNSDGKVRYTTKGGELANA---RKMSDQGIYD 126 (133)
T ss_dssp HHTSHHHHHHHHHHCEEEEEECTTTTSSHHHHHHTTCGGGGCSSEEEEECTTSCEEEECCSCTTTTG---GGSCHHHHHH
T ss_pred HhCCHHHHHHhcCCEEEEEEeCCcccchHHHHHHhCCccCCccceEEEECCCCCEEEEecCCccccc---ccCCHHHHHH
Confidence 455 67777755577889999 899999999999 765664444 23443333333211111 2446677777
Q ss_pred HHHHH
Q 034174 75 IVETV 79 (102)
Q Consensus 75 iie~i 79 (102)
.++.+
T Consensus 127 ~l~~l 131 (133)
T 3fk8_A 127 FFAKI 131 (133)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 77654
No 51
>1nsw_A Thioredoxin, TRX; thermostability, electron transport; 1.90A {Alicyclobacillus acidocaldarius} SCOP: c.47.1.1 PDB: 1rqm_A 1quw_A 1nw2_A
Probab=89.30 E-value=0.95 Score=26.99 Aligned_cols=42 Identities=19% Similarity=0.385 Sum_probs=32.6
Q ss_pred hHHHHhHHhhhcceEEEEEeCCCccchhhhccccCcceEEEE
Q 034174 3 EVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFF 44 (102)
Q Consensus 3 evL~~~a~~v~~~a~IY~vDi~~Vpdfn~myeL~dP~tvMFF 44 (102)
..|.+++++.++-..++.+|+++-++..+-|.+.--+|+++|
T Consensus 37 ~~l~~~~~~~~~~v~~~~v~~~~~~~~~~~~~v~~~Pt~~~~ 78 (105)
T 1nsw_A 37 PVLEEFAEAHADKVTVAKLNVDENPETTSQFGIMSIPTLILF 78 (105)
T ss_dssp HHHHHHHHHSTTTCEEEEEETTTCHHHHHHTTCCSSSEEEEE
T ss_pred HHHHHHHHHhcCCcEEEEEECcCCHHHHHHcCCccccEEEEE
Confidence 456777777766578899999999999999998765565555
No 52
>2qgv_A Hydrogenase-1 operon protein HYAE; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Shigella flexneri 2A} PDB: 2hfd_A
Probab=88.77 E-value=0.62 Score=32.86 Aligned_cols=68 Identities=7% Similarity=0.193 Sum_probs=51.7
Q ss_pred hHHHHhHHhhhcc-eEEEEEeCCCccchhhhccccCcceEEEEeeCceeEEecCCCCCceEEeecCChhHHHHHHHHHh
Q 034174 3 EVLSSVAETIKNF-AVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVY 80 (102)
Q Consensus 3 evL~~~a~~v~~~-a~IY~vDi~~Vpdfn~myeL~dP~tvMFFfrnkHm~vD~GTgnnnKin~~~~~kqefIDiie~iy 80 (102)
=+|.++|++...= +.|+-||+++-|+.-.-|.+..=+|++||=+++-+ .++.++ .+|+++.+.|+..-
T Consensus 56 Pvleela~e~~g~~v~~~KVdvDe~~~lA~~ygV~sIPTlilFk~G~~v---------~~~~G~-~~k~~l~~~i~~~l 124 (140)
T 2qgv_A 56 VMIGELLHEFPDYTWQVAIADLEQSEAIGDRFGAFRFPATLVFTGGNYR---------GVLNGI-HPWAELINLMRGLV 124 (140)
T ss_dssp HHHHHHHTTCTTSCCEEEECCHHHHHHHHHHHTCCSSSEEEEEETTEEE---------EEEESC-CCHHHHHHHHHHHH
T ss_pred hHHHHHHHHcCCCeEEEEEEECCCCHHHHHHcCCccCCEEEEEECCEEE---------EEEecC-CCHHHHHHHHHHHh
Confidence 3677888877655 78999999999999999999877788888666654 245543 56788888887654
No 53
>1fo5_A Thioredoxin; disulfide oxidoreductase, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; NMR {Methanocaldococcus jannaschii} SCOP: c.47.1.1
Probab=88.62 E-value=2 Score=24.49 Aligned_cols=62 Identities=15% Similarity=0.284 Sum_probs=42.0
Q ss_pred hHHHHhHHhhhcceEEEEEeCCCccchhhhccccCcceEEEEeeCceeEEecCCCCCceEEeecCChhHHHHHHHH
Q 034174 3 EVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVET 78 (102)
Q Consensus 3 evL~~~a~~v~~~a~IY~vDi~~Vpdfn~myeL~dP~tvMFFfrnkHm~vD~GTgnnnKin~~~~~kqefIDiie~ 78 (102)
..|.+++++.+.-..++.+|+++-++..+-|.+.--+|+++ +++- ++.+. .+.+++.+.++.
T Consensus 22 ~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~--~G~~-----------~~~G~-~~~~~l~~~l~~ 83 (85)
T 1fo5_A 22 RVVEEVANEMPDAVEVEYINVMENPQKAMEYGIMAVPTIVI--NGDV-----------EFIGA-PTKEALVEAIKK 83 (85)
T ss_dssp HHHHHHHHHCSSSEEEEEEESSSSCCTTTSTTTCCSSEEEE--TTEE-----------ECCSS-SSSHHHHHHHHH
T ss_pred HHHHHHHHHcCCceEEEEEECCCCHHHHHHCCCcccCEEEE--CCEE-----------eeecC-CCHHHHHHHHHH
Confidence 46677777776457789999999999999999875556433 4432 22332 356777777764
No 54
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=88.58 E-value=4 Score=28.57 Aligned_cols=72 Identities=14% Similarity=0.272 Sum_probs=50.3
Q ss_pred hhHHHHhHHhhhcceEEEEEeCCCccchhhhccccCcceEEEEeeCceeEEecCCCCCceEEeecCChhHHHHHHHHHhh
Q 034174 2 DEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVYR 81 (102)
Q Consensus 2 DevL~~~a~~v~~~a~IY~vDi~~Vpdfn~myeL~dP~tvMFFfrnkHm~vD~GTgnnnKin~~~~~kqefIDiie~iyr 81 (102)
...|.+++++.+.-..++.||+++-++..+-|.+.--+|+++| ++..+.- ++.+ ..+++++.+.++.+-.
T Consensus 49 ~p~l~~l~~~~~~~v~~~~vd~d~~~~l~~~~~v~~~Pt~~~~-~~G~~~~--------~~~G-~~~~~~l~~~l~~~l~ 118 (222)
T 3dxb_A 49 APILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLF-KNGEVAA--------TKVG-ALSKGQLKEFLDANLA 118 (222)
T ss_dssp HHHHHHHHHHTTTTCEEEEEETTTCTTTGGGGTCCSBSEEEEE-ETTEEEE--------EEES-CCCHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHhcCCcEEEEEECCCCHHHHHHcCCCcCCEEEEE-ECCeEEE--------Eecc-ccChHHHHHHHHhhcc
Confidence 3567888888877678899999999999999999765675555 4322211 2222 2467899999988765
Q ss_pred cc
Q 034174 82 GA 83 (102)
Q Consensus 82 gA 83 (102)
+.
T Consensus 119 ~~ 120 (222)
T 3dxb_A 119 GS 120 (222)
T ss_dssp CS
T ss_pred cc
Confidence 44
No 55
>1xfl_A Thioredoxin H1; AT3G51030, structural genomics, protein structure initiative, CESG, center for eukaryotic structural genomics; NMR {Arabidopsis thaliana} SCOP: c.47.1.1
Probab=88.14 E-value=2.8 Score=26.62 Aligned_cols=65 Identities=20% Similarity=0.354 Sum_probs=43.1
Q ss_pred hHHHHhHHhhhcceEEEEEeCCCccchhhhccccCcceEEEEeeCceeEEecCCCCCceEEeecCChhHHHHHHHHH
Q 034174 3 EVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETV 79 (102)
Q Consensus 3 evL~~~a~~v~~~a~IY~vDi~~Vpdfn~myeL~dP~tvMFFfrnkHm~vD~GTgnnnKin~~~~~kqefIDiie~i 79 (102)
..|.+++++.++ ..++.||+++-+++.+-|.+.--+|++|| ++..+. + ++.+ . +.+++.+.|+..
T Consensus 58 ~~l~~l~~~~~~-v~~~~vd~d~~~~l~~~~~v~~~Pt~~~~-~~G~~~-~-------~~~G-~-~~~~l~~~l~~~ 122 (124)
T 1xfl_A 58 PFFADLAKKLPN-VLFLKVDTDELKSVASDWAIQAMPTFMFL-KEGKIL-D-------KVVG-A-KKDELQSTIAKH 122 (124)
T ss_dssp HHHHHHHHHCSS-EEEEEEETTTSHHHHHHTTCCSSSEEEEE-ETTEEE-E-------EEES-C-CHHHHHHHHHHH
T ss_pred HHHHHHHHHCCC-cEEEEEECccCHHHHHHcCCCccCEEEEE-ECCEEE-E-------EEeC-C-CHHHHHHHHHHh
Confidence 356677776654 67788999999999999999765576555 443321 1 2333 1 567888777653
No 56
>2vm1_A Thioredoxin, thioredoxin H isoform 1.; oxidoreductase, protein disulfide reductase, thioredoxin-FOL; 1.7A {Hordeum vulgare var} PDB: 2vm2_A
Probab=87.85 E-value=1.2 Score=26.99 Aligned_cols=69 Identities=19% Similarity=0.319 Sum_probs=44.6
Q ss_pred hHHHHhHHhhhcceEEEEEeCCCccchhhhccccCcceEEEEeeCceeEEecCCCCCceEEeecCChhHHHHHHHHHhhc
Q 034174 3 EVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVYRG 82 (102)
Q Consensus 3 evL~~~a~~v~~~a~IY~vDi~~Vpdfn~myeL~dP~tvMFFfrnkHm~vD~GTgnnnKin~~~~~kqefIDiie~iyrg 82 (102)
..|.+++++.++ ..++.+|+++-+++.+-|.+..-+|++|| ++..+. + ++.+ .+.+++.+.|+.+-..
T Consensus 48 ~~l~~~~~~~~~-~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~-~~g~~~-~-------~~~g--~~~~~l~~~l~~~~~~ 115 (118)
T 2vm1_A 48 PVFAEYAKKFPG-AIFLKVDVDELKDVAEAYNVEAMPTFLFI-KDGEKV-D-------SVVG--GRKDDIHTKIVALMGS 115 (118)
T ss_dssp HHHHHHHHHCTT-SEEEEEETTTSHHHHHHTTCCSBSEEEEE-ETTEEE-E-------EEES--CCHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHCCC-cEEEEEEcccCHHHHHHcCCCcCcEEEEE-eCCeEE-E-------EecC--CCHHHHHHHHHHHhcc
Confidence 456677776655 56788999999999999999766676555 543221 1 2223 1467888888776544
Q ss_pred c
Q 034174 83 A 83 (102)
Q Consensus 83 A 83 (102)
+
T Consensus 116 ~ 116 (118)
T 2vm1_A 116 A 116 (118)
T ss_dssp -
T ss_pred c
Confidence 3
No 57
>1nho_A Probable thioredoxin; beta sheet, alpha helix, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.47.1.1
Probab=87.69 E-value=2.6 Score=24.04 Aligned_cols=63 Identities=13% Similarity=0.160 Sum_probs=42.6
Q ss_pred hHHHHhHHhhhcceEEEEEeCCCccchhhhccccCcceEEEEeeCceeEEecCCCCCceEEeecCChhHHHHHHHHH
Q 034174 3 EVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETV 79 (102)
Q Consensus 3 evL~~~a~~v~~~a~IY~vDi~~Vpdfn~myeL~dP~tvMFFfrnkHm~vD~GTgnnnKin~~~~~kqefIDiie~i 79 (102)
..|.+++++.+.-..++.+|+++-++..+-|.+.--+|+++ +++. ++.+. .+.+++.+.++..
T Consensus 21 ~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~--~G~~-----------~~~G~-~~~~~l~~~l~~~ 83 (85)
T 1nho_A 21 EVVDEAKKEFGDKIDVEKIDIMVDREKAIEYGLMAVPAIAI--NGVV-----------RFVGA-PSREELFEAINDE 83 (85)
T ss_dssp HHHHHHHHHHCSSCCEEEECTTTCGGGGGGTCSSCSSEEEE--TTTE-----------EEECS-SCCHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCeEEEEEECCCCHHHHHhCCceeeCEEEE--CCEE-----------EEccC-CCHHHHHHHHHHH
Confidence 45667777776456788999999999999999876556433 4432 33442 3567887777653
No 58
>2djk_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp2_A
Probab=87.59 E-value=1.9 Score=27.97 Aligned_cols=72 Identities=10% Similarity=0.053 Sum_probs=47.5
Q ss_pred hHHHHhHHhhhcceEEEEEeCCCccchhhhccccC--cceEEEEeeCceeEEecCCCCCceEE--eecCChhHHHHHHHH
Q 034174 3 EVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYD--PSTVMFFFRNKHIMIDLGTGNNNKIN--WALKDKQEFIDIVET 78 (102)
Q Consensus 3 evL~~~a~~v~~~a~IY~vDi~~Vpdfn~myeL~d--P~tvMFFfrnkHm~vD~GTgnnnKin--~~~~~kqefIDiie~ 78 (102)
.+|.++|++.+.=..++.||+++-|+.-+.|.+.. -+|+++| ++. .|...++. ++ -+++++...|+.
T Consensus 42 p~l~~~A~~~~gk~~f~~vd~d~~~~~a~~~gi~~~~iPtl~i~-~~~-------~g~~~~~~~~g~-~~~~~l~~fi~~ 112 (133)
T 2djk_A 42 DKLKPIAEAQRGVINFGTIDAKAFGAHAGNLNLKTDKFPAFAIQ-EVA-------KNQKFPFDQEKE-ITFEAIKAFVDD 112 (133)
T ss_dssp HHHHHHHHSSTTTSEEEEECTTTTGGGTTTTTCCSSSSSEEEEE-CTT-------TCCBCCCCSSSC-CCHHHHHHHHHH
T ss_pred HHHHHHHHHhCCeEEEEEEchHHhHHHHHHcCCCcccCCEEEEE-ecC-------cCcccCCCCccc-cCHHHHHHHHHH
Confidence 46778888876557889999999999999999965 5676554 431 12222222 22 245677777777
Q ss_pred Hhhcc
Q 034174 79 VYRGA 83 (102)
Q Consensus 79 iyrgA 83 (102)
+-.|.
T Consensus 113 ~l~Gk 117 (133)
T 2djk_A 113 FVAGK 117 (133)
T ss_dssp HHHTC
T ss_pred HHcCC
Confidence 66553
No 59
>2f51_A Thioredoxin; electron transport; 1.90A {Trichomonas vaginalis}
Probab=87.58 E-value=1.3 Score=27.97 Aligned_cols=41 Identities=20% Similarity=0.304 Sum_probs=31.8
Q ss_pred hHHHHhHHhhhcceEEEEEeCCCccchhhhccccCcceEEEE
Q 034174 3 EVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFF 44 (102)
Q Consensus 3 evL~~~a~~v~~~a~IY~vDi~~Vpdfn~myeL~dP~tvMFF 44 (102)
..|.+++++. +-..++.||+++-+++.+-|.+..-+|++||
T Consensus 43 ~~l~~l~~~~-~~v~~~~vd~~~~~~~~~~~~i~~~Pt~~~~ 83 (118)
T 2f51_A 43 QILPSIAEAN-KDVTFIKVDVDKNGNAADAYGVSSIPALFFV 83 (118)
T ss_dssp HHHHHHHHHC-TTSEEEEEETTTCHHHHHHTTCCSSSEEEEE
T ss_pred HHHHHHHHHC-CCeEEEEEECCCCHHHHHhcCCCCCCEEEEE
Confidence 4567777776 4467789999999999999999776675555
No 60
>2dj3_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=87.53 E-value=2.3 Score=26.54 Aligned_cols=74 Identities=16% Similarity=0.134 Sum_probs=47.0
Q ss_pred hHHHHhHHhhh--cceEEEEEeCCCccchhhhccccCcceEEEEeeCceeEEecCCCCCceEEeecCChhHHHHHHHHHh
Q 034174 3 EVLSSVAETIK--NFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVY 80 (102)
Q Consensus 3 evL~~~a~~v~--~~a~IY~vDi~~Vpdfn~myeL~dP~tvMFFfrnkHm~vD~GTgnnnKin~~~~~kqefIDiie~iy 80 (102)
..|.+++++.+ .-..++.||.++-+...+-|.+.--+|++||-+++.+ ..-++.+...+.++|...|+..-
T Consensus 45 p~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~-------~~~~~~gg~~~~~~l~~~l~~~~ 117 (133)
T 2dj3_A 45 PIYTSLGKKYKGQKDLVIAKMDATANDITNDQYKVEGFPTIYFAPSGDKK-------NPIKFEGGNRDLEHLSKFIDEHA 117 (133)
T ss_dssp HHHHHHHHHHTTSSSEEEEEECTTTSCCCCSSCCCSSSSEEEEECTTCTT-------SCEECCSSCCSTTHHHHHHHHHS
T ss_pred HHHHHHHHHhcCCCCEEEEEecCCcCHHHHhhcCCCcCCEEEEEeCCCcc-------cceEecCCCcCHHHHHHHHHHhc
Confidence 45777888776 3467788999999988888898766675554322211 11112222346788888888765
Q ss_pred hcc
Q 034174 81 RGA 83 (102)
Q Consensus 81 rgA 83 (102)
...
T Consensus 118 ~~~ 120 (133)
T 2dj3_A 118 TKR 120 (133)
T ss_dssp SSC
T ss_pred ccc
Confidence 433
No 61
>1x5e_A Thioredoxin domain containing protein 1; TMX, TXNDC1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=87.51 E-value=3.3 Score=25.72 Aligned_cols=65 Identities=20% Similarity=0.278 Sum_probs=43.1
Q ss_pred hHHHHhHHhhhc-ceEEEEEeCCCccchhhhccccCcceEEEEeeCceeEEecCCCCCceEEeecCChhHHHHHHHH
Q 034174 3 EVLSSVAETIKN-FAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVET 78 (102)
Q Consensus 3 evL~~~a~~v~~-~a~IY~vDi~~Vpdfn~myeL~dP~tvMFFfrnkHm~vD~GTgnnnKin~~~~~kqefIDiie~ 78 (102)
..|.+++++.+. =..++.||+++-+++.+-|.+.--+|++|| ++..+ .--.| ..+.++|...++.
T Consensus 42 p~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~-~~G~~--~~~~G--------~~~~~~l~~~l~~ 107 (126)
T 1x5e_A 42 PEWESFAEWGEDLEVNIAKVDVTEQPGLSGRFIINALPTIYHC-KDGEF--RRYQG--------PRTKKDFINFISD 107 (126)
T ss_dssp HHHHHHHHHHGGGTCEEEEEETTTCHHHHHHTTCCSSSEEEEE-ETTEE--EECCS--------CCCHHHHHHHHHT
T ss_pred HHHHHHHHHhccCCeEEEEEECcCCHHHHHHcCCcccCEEEEE-eCCeE--EEeec--------CCCHHHHHHHHHH
Confidence 456777777663 356788999999999999999766676666 55433 22223 2345777777764
No 62
>2voc_A Thioredoxin; electron transport, homodimer, disulfide, transport, redox-active center; 1.50A {Bacillus subtilis} PDB: 2ipa_A 2gzy_A 2gzz_A
Probab=87.44 E-value=1.8 Score=26.64 Aligned_cols=66 Identities=15% Similarity=0.295 Sum_probs=44.0
Q ss_pred hHHHHhHHhhhcceEEEEEeCCCccchhhhccccCcceEEEEeeCceeEEecCCCCCceEEeecCChhHHHHHHHH
Q 034174 3 EVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVET 78 (102)
Q Consensus 3 evL~~~a~~v~~~a~IY~vDi~~Vpdfn~myeL~dP~tvMFFfrnkHm~vD~GTgnnnKin~~~~~kqefIDiie~ 78 (102)
..|.+++++.++-..++.+|+++-+++.+-|.+.--+|+++| ++..+. . ++.+ ..++++|.+.++.
T Consensus 37 ~~l~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~-~~G~~~-~-------~~~G-~~~~~~l~~~l~~ 102 (112)
T 2voc_A 37 PVLEELDQEMGDKLKIVKIDVDENQETAGKYGVMSIPTLLVL-KDGEVV-E-------TSVG-FKPKEALQELVNK 102 (112)
T ss_dssp HHHHHHHHHHTTTCEEEEEETTTCCSHHHHTTCCSBSEEEEE-ETTEEE-E-------EEES-CCCHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCcEEEEEECCCCHHHHHHcCCCcccEEEEE-eCCEEE-E-------EEeC-CCCHHHHHHHHHH
Confidence 456778887765578899999999999999999765665555 543321 1 1222 2345777777653
No 63
>2xc2_A Thioredoxinn; oxidoreductase, protein disulfide reductase; 1.56A {Schistosoma mansoni} PDB: 2xbq_A 2xbi_A
Probab=87.14 E-value=2.6 Score=25.83 Aligned_cols=63 Identities=13% Similarity=0.272 Sum_probs=39.5
Q ss_pred hHHHHhHHhhhcceEEEEEeCCCccchhhhccccCcceEEEEeeCceeEEecCCCCCceEEeecCChhHHHHHHHH
Q 034174 3 EVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVET 78 (102)
Q Consensus 3 evL~~~a~~v~~~a~IY~vDi~~Vpdfn~myeL~dP~tvMFFfrnkHm~vD~GTgnnnKin~~~~~kqefIDiie~ 78 (102)
..|.+++++. + ..++.+|.++-+++.+-|.+.--+|+++| ++..+ ++ ++.+ .+.+++.+.++.
T Consensus 53 ~~~~~~~~~~-~-~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~-~~G~~-~~-------~~~G--~~~~~l~~~l~~ 115 (117)
T 2xc2_A 53 PLFKELSEKY-D-AIFVKVDVDKLEETARKYNISAMPTFIAI-KNGEK-VG-------DVVG--ASIAKVEDMIKK 115 (117)
T ss_dssp HHHHHHHTTS-S-SEEEEEETTTSHHHHHHTTCCSSSEEEEE-ETTEE-EE-------EEES--SCHHHHHHHHHH
T ss_pred HHHHHHHHHc-C-cEEEEEECCccHHHHHHcCCCccceEEEE-eCCcE-EE-------EEeC--CCHHHHHHHHHH
Confidence 3455666554 3 56788999999999999999765575555 44322 11 2333 245677776664
No 64
>1faa_A Thioredoxin F; electron transport; 1.85A {Spinacia oleracea} SCOP: c.47.1.1
Probab=86.75 E-value=3.3 Score=25.55 Aligned_cols=64 Identities=9% Similarity=0.205 Sum_probs=40.3
Q ss_pred hHHHHhHHhhhcceEEEEEeCC-CccchhhhccccCcceEEEEeeCceeEEecCCCCCceEEeecCChhHHHHHHHH
Q 034174 3 EVLSSVAETIKNFAVIYLVDIS-EVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVET 78 (102)
Q Consensus 3 evL~~~a~~v~~~a~IY~vDi~-~Vpdfn~myeL~dP~tvMFFfrnkHm~vD~GTgnnnKin~~~~~kqefIDiie~ 78 (102)
..|.+++++.++ ..++.+|.+ +-++..+-|.+.--+|+++| ++..+. + ++.+. +.+++.+.++.
T Consensus 57 ~~l~~~~~~~~~-~~~~~vd~~~~~~~~~~~~~v~~~Pt~~~~-~~G~~~-~-------~~~G~--~~~~l~~~i~~ 121 (124)
T 1faa_A 57 PKYEKLAEEYLD-VIFLKLDCNQENKTLAKELGIRVVPTFKIL-KENSVV-G-------EVTGA--KYDKLLEAIQA 121 (124)
T ss_dssp HHHHHHHHHCTT-SEEEEEECSSTTHHHHHHHCCSSSSEEEEE-ETTEEE-E-------EEESS--CHHHHHHHHHH
T ss_pred HHHHHHHHHCCC-CEEEEEecCcchHHHHHHcCCCeeeEEEEE-eCCcEE-E-------EEcCC--CHHHHHHHHHH
Confidence 456677777666 567889997 68888888998765575444 443321 1 12222 25677777765
No 65
>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}
Probab=86.55 E-value=2.2 Score=29.45 Aligned_cols=68 Identities=12% Similarity=0.111 Sum_probs=47.2
Q ss_pred hHHHHhHHhhhcceEEEEEeCCCccchhhhccccCcceEEEEeeCceeEEecCCCCCceEEeecCChhHHHHHHHHHh
Q 034174 3 EVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVY 80 (102)
Q Consensus 3 evL~~~a~~v~~~a~IY~vDi~~Vpdfn~myeL~dP~tvMFFfrnkHm~vD~GTgnnnKin~~~~~kqefIDiie~iy 80 (102)
..+.+++++.+.-..++.||+++-+++.+-|.+.--+|+++| ++..+ +.--+| ..+.+++.+.|+..-
T Consensus 134 p~~~~l~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~-~~G~~-~~~~~G--------~~~~~~l~~~i~~~l 201 (210)
T 3apq_A 134 PTWREFAKEVDGLLRIGAVNCGDDRMLCRMKGVNSYPSLFIF-RSGMA-AVKYNG--------DRSKESLVAFAMQHV 201 (210)
T ss_dssp HHHHHHHHHTBTTBEEEEEETTTCHHHHHHTTCCSSSEEEEE-CTTSC-CEECCS--------CCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCceEEEEEECCccHHHHHHcCCCcCCeEEEE-ECCCc-eeEecC--------CCCHHHHHHHHHHhC
Confidence 456778888877688899999999999999999765576565 54332 222222 235678888877654
No 66
>3ga4_A Dolichyl-diphosphooligosaccharide-protein glycosyltransferase subunit OST6; oxidoreductase, active site loop, redox state, membrane; HET: PG4; 1.30A {Saccharomyces cerevisiae} PDB: 3g7y_A 3g9b_A*
Probab=86.26 E-value=0.91 Score=32.93 Aligned_cols=45 Identities=20% Similarity=0.435 Sum_probs=36.7
Q ss_pred hHHHHhHHhhh-----cceEEEEEeCCCccchhhhccccCcceEEEEeeC
Q 034174 3 EVLSSVAETIK-----NFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRN 47 (102)
Q Consensus 3 evL~~~a~~v~-----~~a~IY~vDi~~Vpdfn~myeL~dP~tvMFFfrn 47 (102)
-++.++|+... .=..++-||+++-|+.-+.|.+..=+|+|+|=.+
T Consensus 64 P~~e~lA~~~~~~~~~~~v~f~kvD~d~~~~la~~~~I~siPtl~~F~~g 113 (178)
T 3ga4_A 64 KTYHAVADVIRSQAPQSLNLFFTVDVNEVPQLVKDLKLQNVPHLVVYPPA 113 (178)
T ss_dssp HHHHHHHHHHHHHCTTCCEEEEEEETTTCHHHHHHTTCCSSCEEEEECCC
T ss_pred HHHHHHHHHhhhccCCCCEEEEEEECccCHHHHHHcCCCCCCEEEEEcCC
Confidence 46777887775 4577899999999999999999988898777544
No 67
>2l5l_A Thioredoxin; structural genomics, electron transport, PSI-2, protein STRU initiative; NMR {Bacteroides vulgatus}
Probab=86.22 E-value=3.8 Score=26.14 Aligned_cols=68 Identities=15% Similarity=0.227 Sum_probs=45.2
Q ss_pred hHHHHhHHhhhcceEEEEEeCCCccchhhhccccCcceEEEEeeCceeEEecCCCCCceEEeecCChhHHHHHHHHHh
Q 034174 3 EVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVY 80 (102)
Q Consensus 3 evL~~~a~~v~~~a~IY~vDi~~Vpdfn~myeL~dP~tvMFFfrnkHm~vD~GTgnnnKin~~~~~kqefIDiie~iy 80 (102)
..|.+++++.++-..++.||+++-+++.+-|.+.--+|++||=++..+. +..+ ..+.+++.+.|+..-
T Consensus 58 ~~l~~l~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~~G~~~---------~~~G-~~~~~~l~~~l~~~~ 125 (136)
T 2l5l_A 58 PILDELAKEYDGQIVIYKVDTEKEQELAGAFGIRSIPSILFIPMEGKPE---------MAQG-AMPKASFKKAIDEFL 125 (136)
T ss_dssp HHHHHHHHHTTTTCEEEEEETTTCHHHHHHTTCCSSCEEEEECSSSCCE---------EEES-CCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCEEEEEEeCCCCHHHHHHcCCCCCCEEEEECCCCcEE---------EEeC-CCCHHHHHHHHHHHh
Confidence 4567788877755788999999999999999997666654441322111 1222 235678888887653
No 68
>3d6i_A Monothiol glutaredoxin-3; thioredoxin-like, electron transport, redox- active center, transport, oxidoreductase; HET: CME; 1.50A {Saccharomyces cerevisiae}
Probab=86.06 E-value=1.7 Score=26.30 Aligned_cols=66 Identities=15% Similarity=0.357 Sum_probs=41.9
Q ss_pred hHHHHhHHhh--hcceEEEEEeCCCccchhhhccccCcceEEEEeeCceeEEecCCCCCceEEeecCChhHHHHHHHHHh
Q 034174 3 EVLSSVAETI--KNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVY 80 (102)
Q Consensus 3 evL~~~a~~v--~~~a~IY~vDi~~Vpdfn~myeL~dP~tvMFFfrnkHm~vD~GTgnnnKin~~~~~kqefIDiie~iy 80 (102)
..|.+++++. ++ ..++.||+++-|++.+-|.+.--+|+++| ++..+ ++- +.+. +.+++.+.++..-
T Consensus 41 ~~~~~~~~~~~~~~-~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~-~~G~~-~~~-------~~G~--~~~~l~~~l~~~~ 108 (112)
T 3d6i_A 41 QVFEAISNEPSNSN-VSFLSIDADENSEISELFEISAVPYFIII-HKGTI-LKE-------LSGA--DPKEYVSLLEDCK 108 (112)
T ss_dssp HHHHHHHHCGGGTT-SEEEEEETTTCHHHHHHTTCCSSSEEEEE-ETTEE-EEE-------ECSC--CHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCC-EEEEEEecccCHHHHHHcCCCcccEEEEE-ECCEE-EEE-------ecCC--CHHHHHHHHHHHH
Confidence 3566777763 34 67899999999999999999766676555 44332 222 2222 2345777776653
No 69
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=85.77 E-value=2.5 Score=30.16 Aligned_cols=47 Identities=17% Similarity=0.213 Sum_probs=36.7
Q ss_pred hhHHHHhHHhhhcceEEEEEeCCCccchhhhccccCcceEEEEeeCc
Q 034174 2 DEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNK 48 (102)
Q Consensus 2 DevL~~~a~~v~~~a~IY~vDi~~Vpdfn~myeL~dP~tvMFFfrnk 48 (102)
...+.+++++.+.-..++.||+++-|++.+-|.+.-.+|++||-+++
T Consensus 45 ~p~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~G~ 91 (287)
T 3qou_A 45 TPILESLAAQYNGQFILAKLDCDAEQMIAAQFGLRAIPTVYLFQNGQ 91 (287)
T ss_dssp HHHHHHHHHHHTSSSEEEEEETTTCHHHHHTTTCCSSSEEEEEETTE
T ss_pred HHHHHHHHHHcCCCeEEEEEeCccCHHHHHHcCCCCCCeEEEEECCE
Confidence 34677888888765778999999999999999997766876664444
No 70
>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A
Probab=85.75 E-value=1.5 Score=30.03 Aligned_cols=66 Identities=14% Similarity=0.210 Sum_probs=46.2
Q ss_pred hHHHHhHHhhhcc---eEEEEEeCCCccchhhhccccCcceEEEEeeCceeEEecCCCCCceEEeecCChhHHHHHHHHH
Q 034174 3 EVLSSVAETIKNF---AVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETV 79 (102)
Q Consensus 3 evL~~~a~~v~~~---a~IY~vDi~~Vpdfn~myeL~dP~tvMFFfrnkHm~vD~GTgnnnKin~~~~~kqefIDiie~i 79 (102)
..+.++|++++.- ..++.+|.++-++..+-|.+..-+|++||-+++.+. + .|. .+.+++++.++..
T Consensus 167 p~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~g~~~~--~-~g~--------~~~~~l~~~l~~~ 235 (241)
T 3idv_A 167 PEYEKAAKELSKRSPPIPLAKVDATAETDLAKRFDVSGYPTLKIFRKGRPYD--Y-NGP--------REKYGIVDYMIEQ 235 (241)
T ss_dssp HHHHHHHHHHHTSSSCCCEEEEETTTCHHHHHHTTCCSSSEEEEEETTEEEE--C-CSC--------CSHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCcEEEEEEECCCCHHHHHHcCCcccCEEEEEECCeEEE--e-cCC--------CCHHHHHHHHHhh
Confidence 4567778777643 678889999999999999997766877765555432 2 232 3567777777654
No 71
>3cxg_A Putative thioredoxin; malaria, structural GEN oxidoreductase, structural genomics consortium, SGC; 2.00A {Plasmodium falciparum}
Probab=85.25 E-value=2.3 Score=27.43 Aligned_cols=67 Identities=13% Similarity=0.279 Sum_probs=41.5
Q ss_pred hHHHHhHHhhhcceEEEEEeCCCccchhhhccccCcceEEEEe--eCceeEEecCCCCCceEEeecCChhHHHHHHHHHh
Q 034174 3 EVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFF--RNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVY 80 (102)
Q Consensus 3 evL~~~a~~v~~~a~IY~vDi~~Vpdfn~myeL~dP~tvMFFf--rnkHm~vD~GTgnnnKin~~~~~kqefIDiie~iy 80 (102)
..|.+++++. + ..++.||+++-+++.+-|.+.--+|++||. +++-..+. ++.+. +.++|.+.|+..-
T Consensus 60 p~l~~l~~~~-~-v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~~~g~g~~~~-------~~~G~--~~~~l~~~l~~~l 128 (133)
T 3cxg_A 60 EYFKNQLNYY-Y-VTLVDIDVDIHPKLNDQHNIKALPTFEFYFNLNNEWVLVH-------TVEGA--NQNDIEKAFQKYC 128 (133)
T ss_dssp HHHHGGGGTE-E-CEEEEEETTTCHHHHHHTTCCSSSEEEEEEEETTEEEEEE-------EEESC--CHHHHHHHHHHHS
T ss_pred HHHHHHHHhc-C-EEEEEEeccchHHHHHhcCCCCCCEEEEEEecCCCeEEEE-------EEcCC--CHHHHHHHHHHHH
Confidence 3455555443 2 567889999999999999997655654553 33311222 23333 5788888887764
No 72
>1wmj_A Thioredoxin H-type; structural genomics, program for RICE genome research, oxidoreductase; NMR {Oryza sativa}
Probab=85.03 E-value=0.85 Score=28.27 Aligned_cols=70 Identities=17% Similarity=0.238 Sum_probs=45.9
Q ss_pred hhHHHHhHHhhhcceEEEEEeCCCccchhhhccccCcceEEEEeeCceeEEecCCCCCceEEeecCChhHHHHHHHHHhh
Q 034174 2 DEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVYR 81 (102)
Q Consensus 2 DevL~~~a~~v~~~a~IY~vDi~~Vpdfn~myeL~dP~tvMFFfrnkHm~vD~GTgnnnKin~~~~~kqefIDiie~iyr 81 (102)
...|.+++++.++ ..++.+|+++-+++.+-|.+.--+|+++|-+++.+. ++.+ .+.+++.+.++..-.
T Consensus 55 ~~~l~~~~~~~~~-v~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~---------~~~g--~~~~~l~~~l~~~~~ 122 (130)
T 1wmj_A 55 APVFAEYAKKFPG-AVFLKVDVDELKEVAEKYNVEAMPTFLFIKDGAEAD---------KVVG--ARKDDLQNTIVKHVG 122 (130)
T ss_dssp HHHHHHHHHHCTT-BCCEECCTTTSGGGHHHHTCCSSCCCCBCTTTTCCB---------CCCT--TCTTTHHHHHHHHTS
T ss_pred HHHHHHHHHHCCC-CEEEEEeccchHHHHHHcCCCccceEEEEeCCeEEE---------EEeC--CCHHHHHHHHHHHHh
Confidence 4567777777665 567889999999999999996555655553333221 2222 146788888887665
Q ss_pred cc
Q 034174 82 GA 83 (102)
Q Consensus 82 gA 83 (102)
.+
T Consensus 123 ~~ 124 (130)
T 1wmj_A 123 AT 124 (130)
T ss_dssp SS
T ss_pred cc
Confidence 44
No 73
>3evi_A Phosducin-like protein 2; alpha beta, 3-layer(ABA) sandwich, unknown function; 2.70A {Homo sapiens}
Probab=84.89 E-value=1.3 Score=29.28 Aligned_cols=47 Identities=11% Similarity=0.075 Sum_probs=34.1
Q ss_pred ChhHHHHhHHhhhcceEEEEEeCCCccchhhhccccCcceEEEEeeCceeE
Q 034174 1 MDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIM 51 (102)
Q Consensus 1 mDevL~~~a~~v~~~a~IY~vDi~~Vpdfn~myeL~dP~tvMFFfrnkHm~ 51 (102)
|+.+|.++|++-.+ ..++-||+++.+ +-|.+..=+|+++|-+++-+.
T Consensus 41 ~~p~l~~la~~~~~-v~f~kvd~d~~~---~~~~v~~~PT~~~fk~G~~v~ 87 (118)
T 3evi_A 41 VNQHLSLLARKFPE-TKFVKAIVNSCI---QHYHDNCLPTIFVYKNGQIEA 87 (118)
T ss_dssp HHHHHHHHHHHCTT-SEEEEEEGGGTS---TTCCGGGCSEEEEEETTEEEE
T ss_pred HHHHHHHHHHHCCC-CEEEEEEhHHhH---HHCCCCCCCEEEEEECCEEEE
Confidence 45678888888765 577899999863 667776666777776666543
No 74
>1oaz_A Thioredoxin 1; immune system, antibody/complex, antibody, allergy, IGE, conformational diversity, multispecficity, redox-active center; 2.77A {Escherichia coli} SCOP: c.47.1.1
Probab=83.80 E-value=3 Score=26.62 Aligned_cols=66 Identities=15% Similarity=0.289 Sum_probs=38.8
Q ss_pred hhHHHHhHHhhhcceEEEEEeCCCccchhhhccccCcceEEEEeeCceeEEecCCCCCceEEeecCChhHHHHHHH
Q 034174 2 DEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVE 77 (102)
Q Consensus 2 DevL~~~a~~v~~~a~IY~vDi~~Vpdfn~myeL~dP~tvMFFfrnkHm~vD~GTgnnnKin~~~~~kqefIDiie 77 (102)
+..+.+++++.++-..++.+|+++-++..+-|.+.--+|++|| ++-.+. .++.+. .+++++.+.++
T Consensus 54 ~p~~~~l~~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~-~~G~~~--------~~~~G~-~~~~~l~~~l~ 119 (123)
T 1oaz_A 54 APILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLF-KNGEVA--------ATKVGA-LSKGQLKEFLD 119 (123)
T ss_dssp HHHHTTC-------CEEEEEETTSCTTTGGGGTCCBSSEEEEE-ESSSEE--------EEEESC-CCHHHHHHHHT
T ss_pred HHHHHHHHHHhcCCeEEEEEECCCCHHHHHHcCCCccCEEEEE-ECCEEE--------EEEeCC-CCHHHHHHHHH
Confidence 3456666766654467899999999999999999766676666 543221 123332 34577777665
No 75
>3dml_A Putative uncharacterized protein; thioredoxin, oxidoreductase, sulfur oxidation, thiol- disulfide oxidoreductase; HET: MSE; 1.90A {Paracoccus denitrificans} PDB: 3d4t_A*
Probab=82.97 E-value=2.7 Score=28.46 Aligned_cols=61 Identities=10% Similarity=0.109 Sum_probs=45.0
Q ss_pred eEEEEEeCCCc--cchhhhccccCcceEEEEeeCceeEEecCCCCCceEEeecCChhHHHHHHHHHhhccccC
Q 034174 16 AVIYLVDISEV--PDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVYRGARKG 86 (102)
Q Consensus 16 a~IY~vDi~~V--pdfn~myeL~dP~tvMFFfrnkHm~vD~GTgnnnKin~~~~~kqefIDiie~iyrgA~kG 86 (102)
+.+..||+++- ++....|.+.-++|++||=+++-+- ++.+.+. +++|...++.+-.++..|
T Consensus 53 ~~l~~vdv~~~~~~~la~~~~V~g~PT~i~f~~G~ev~---------Ri~G~~~-~~~f~~~L~~~l~~~~~~ 115 (116)
T 3dml_A 53 APVQRLQMRDPLPPGLELARPVTFTPTFVLMAGDVESG---------RLEGYPG-EDFFWPMLARLIGQAEPG 115 (116)
T ss_dssp SCEEEEETTSCCCTTCBCSSCCCSSSEEEEEETTEEEE---------EEECCCC-HHHHHHHHHHHHHHHC--
T ss_pred ceEEEEECCCCCchhHHHHCCCCCCCEEEEEECCEEEe---------eecCCCC-HHHHHHHHHHHHhhcCCC
Confidence 56788999874 5788899999999988886565443 6776555 589999999886665444
No 76
>2ywm_A Glutaredoxin-like protein; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 2.30A {Aquifex aeolicus} PDB: 2ayt_A
Probab=82.90 E-value=8.9 Score=26.29 Aligned_cols=67 Identities=10% Similarity=0.097 Sum_probs=42.9
Q ss_pred HHHhHHhh--hcceEEEEEeCCCccchhhhccccCcceEEEEeeCceeEEecCCCCCceEEeecCChhHHHHHHHHHhh
Q 034174 5 LSSVAETI--KNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVYR 81 (102)
Q Consensus 5 L~~~a~~v--~~~a~IY~vDi~~Vpdfn~myeL~dP~tvMFFfrnkHm~vD~GTgnnnKin~~~~~kqefIDiie~iyr 81 (102)
+.++|.+. +.-..+..||.++-|+..+-|.+.--+|+++| ++... .....+ ..+.++|.+.++....
T Consensus 47 ~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Ptl~~~-~~~~~--------~~~~~G-~~~~~~l~~~~~~~~~ 115 (229)
T 2ywm_A 47 TVEVIGEAVGQDKIKLDIYSPFTHKEETEKYGVDRVPTIVIE-GDKDY--------GIRYIG-LPAGLEFTTLINGIFH 115 (229)
T ss_dssp HHHHHHHHHCTTTEEEEEECTTTCHHHHHHTTCCBSSEEEEE-SSSCC--------CEEEES-CCCTTHHHHHHHHHHH
T ss_pred HHHHHhccCCCCceEEEEecCcccHHHHHHcCCCcCcEEEEE-CCCcc--------cceecC-CccHHHHHHHHHHHHh
Confidence 44554444 55677899999999999999999776676555 33211 122333 3455777777766553
No 77
>2wz9_A Glutaredoxin-3; protein binding; 1.55A {Homo sapiens} PDB: 2diy_A
Probab=81.27 E-value=3.1 Score=27.30 Aligned_cols=70 Identities=20% Similarity=0.357 Sum_probs=46.2
Q ss_pred hHHHHhHHhhhcceEEEEEeCCCccchhhhccccCcceEEEEeeCceeEEecCCCCCceEEeecCChhHHHHHHHHHhhc
Q 034174 3 EVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVYRG 82 (102)
Q Consensus 3 evL~~~a~~v~~~a~IY~vDi~~Vpdfn~myeL~dP~tvMFFfrnkHm~vD~GTgnnnKin~~~~~kqefIDiie~iyrg 82 (102)
..|.+++++.++ ..++.||+++-|++.+-|.+.--+|++||-+++-+. ++.+. +.+++.+.|+..-..
T Consensus 52 p~l~~l~~~~~~-v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~G~~~~---------~~~G~--~~~~l~~~i~~~l~~ 119 (153)
T 2wz9_A 52 EVMAELAKELPQ-VSFVKLEAEGVPEVSEKYEISSVPTFLFFKNSQKID---------RLDGA--HAPELTKKVQRHASS 119 (153)
T ss_dssp HHHHHHHHHCTT-SEEEEEETTTSHHHHHHTTCCSSSEEEEEETTEEEE---------EEESS--CHHHHHHHHHHHSCT
T ss_pred HHHHHHHHHcCC-eEEEEEECCCCHHHHHHcCCCCCCEEEEEECCEEEE---------EEeCC--CHHHHHHHHHHHhcc
Confidence 456677776655 567889999999999999997666655554333322 23331 457788888877655
Q ss_pred cc
Q 034174 83 AR 84 (102)
Q Consensus 83 A~ 84 (102)
+.
T Consensus 120 ~~ 121 (153)
T 2wz9_A 120 GS 121 (153)
T ss_dssp TS
T ss_pred cc
Confidence 43
No 78
>2pu9_C TRX-F, thioredoxin F-type, chloroplast; protein-protein complex, iron-sulfur, electron transport; 1.65A {Spinacia oleracea} PDB: 2pvo_C 1f9m_A
Probab=80.32 E-value=3.2 Score=25.11 Aligned_cols=65 Identities=9% Similarity=0.203 Sum_probs=41.0
Q ss_pred hHHHHhHHhhhcceEEEEEeCC-CccchhhhccccCcceEEEEeeCceeEEecCCCCCceEEeecCChhHHHHHHHHH
Q 034174 3 EVLSSVAETIKNFAVIYLVDIS-EVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETV 79 (102)
Q Consensus 3 evL~~~a~~v~~~a~IY~vDi~-~Vpdfn~myeL~dP~tvMFFfrnkHm~vD~GTgnnnKin~~~~~kqefIDiie~i 79 (102)
..|.+++++.++ ..++.+|++ +-+++.+-|.+.--+|+++ |++..+. + ++.+. +.+++...|+.+
T Consensus 44 ~~l~~~~~~~~~-v~~~~vd~~~~~~~~~~~~~v~~~Pt~~~-~~~G~~~-~-------~~~G~--~~~~l~~~l~~~ 109 (111)
T 2pu9_C 44 PKYEKLAEEYLD-VIFLKLDCNQENKTLAKELGIRVVPTFKI-LKENSVV-G-------EVTGA--KYDKLLEAIQAA 109 (111)
T ss_dssp HHHHHHHHHCTT-SEEEEEECSSTTHHHHHHHCCSBSSEEEE-ESSSSEE-E-------EEESS--CHHHHHHHHHHH
T ss_pred HHHHHHHHHCCC-eEEEEEecCcchHHHHHHcCCCeeeEEEE-EeCCcEE-E-------EEcCC--CHHHHHHHHHHh
Confidence 456777777766 567889998 7888989999865456544 4442221 1 22332 256777777653
No 79
>3emx_A Thioredoxin; structural genomics, oxidoreductase, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.25A {Aeropyrum pernix}
Probab=79.01 E-value=2.7 Score=27.00 Aligned_cols=71 Identities=13% Similarity=0.117 Sum_probs=43.5
Q ss_pred hHHHHhHHhhhcceEEEEEeC---------CCccchhhhccccCcceEEEEeeCceeEEecCCCCCceEEeecCChhHHH
Q 034174 3 EVLSSVAETIKNFAVIYLVDI---------SEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFI 73 (102)
Q Consensus 3 evL~~~a~~v~~~a~IY~vDi---------~~Vpdfn~myeL~dP~tvMFFfrnkHm~vD~GTgnnnKin~~~~~kqefI 73 (102)
..|.+++++.+ ..++.||+ ++-++..+-|.+.--+|++||-+++-+ + ++.+ ..+++.+-
T Consensus 51 p~l~~l~~~~~--v~~~~vd~~~~~~~~~~d~~~~l~~~~~v~~~Pt~~~~~~G~~v--~-------~~~G-~~~~~~~~ 118 (135)
T 3emx_A 51 PQLIQASKEVD--VPIVMFIWGSLIGERELSAARLEMNKAGVEGTPTLVFYKEGRIV--D-------KLVG-ATPWSLKV 118 (135)
T ss_dssp HHHHHHHTTCC--SCEEEEEECTTCCHHHHHHHHHHHHHHTCCSSSEEEEEETTEEE--E-------EEES-CCCHHHHH
T ss_pred hhHHHHHHHCC--CEEEEEECCCchhhhhhhhhHHHHHHcCCceeCeEEEEcCCEEE--E-------EEeC-CCCHHHHH
Confidence 35666777655 67888999 888888889998653376555433321 1 2333 34567888
Q ss_pred HHHHHHhhcccc
Q 034174 74 DIVETVYRGARK 85 (102)
Q Consensus 74 Diie~iyrgA~k 85 (102)
.+++....+..+
T Consensus 119 ~~i~~~~~~~~~ 130 (135)
T 3emx_A 119 EKAREIYGGEGH 130 (135)
T ss_dssp HHHHHHC-----
T ss_pred HHHHHHhCCCcc
Confidence 888887766543
No 80
>2l6c_A Thioredoxin; oxidoreductase; NMR {Desulfovibrio vulgaris} PDB: 2l6d_A
Probab=78.31 E-value=2.9 Score=25.73 Aligned_cols=66 Identities=15% Similarity=0.180 Sum_probs=42.2
Q ss_pred hHHHHhHHhhhcceEEEEEeCCCccchhhhccccCcceEEEEeeCceeEEecCCCCCceEEeecCChhHHHHHHHHH
Q 034174 3 EVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETV 79 (102)
Q Consensus 3 evL~~~a~~v~~~a~IY~vDi~~Vpdfn~myeL~dP~tvMFFfrnkHm~vD~GTgnnnKin~~~~~kqefIDiie~i 79 (102)
..|.+++++..+ ..++.+|+++-++..+-|.+.--+|++||-+++.+. ++.+. .++++|...++..
T Consensus 39 ~~l~~~~~~~~~-v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~G~~v~---------~~~G~-~~~~~l~~~~~~~ 104 (110)
T 2l6c_A 39 KVLDKFGARAPQ-VAISSVDSEARPELMKELGFERVPTLVFIRDGKVAK---------VFSGI-MNPRELQALYASI 104 (110)
T ss_dssp HHHHHHHTTCTT-SCEEEEEGGGCHHHHHHTTCCSSCEEEEEESSSEEE---------EEESC-CCHHHHHHHHHTC
T ss_pred HHHHHHHHHCCC-cEEEEEcCcCCHHHHHHcCCcccCEEEEEECCEEEE---------EEcCC-CCHHHHHHHHHHH
Confidence 456666665544 467889999999999999997666766663343322 23332 3567777766643
No 81
>2es7_A Q8ZP25_salty, putative thiol-disulfide isomerase and thioredoxi; structural genomics, PSI, protein structure initiative; 2.80A {Salmonella typhimurium} SCOP: c.47.1.20 PDB: 2gzp_A 2jzt_A
Probab=76.41 E-value=2.4 Score=28.52 Aligned_cols=66 Identities=5% Similarity=0.199 Sum_probs=43.3
Q ss_pred HHHHhHHhhhcceE--EEEEeCCCccchhhhccccCcceEEEEeeCceeEEecCCCCCceEEeecCChhHHHHHHHHHh
Q 034174 4 VLSSVAETIKNFAV--IYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVY 80 (102)
Q Consensus 4 vL~~~a~~v~~~a~--IY~vDi~~Vpdfn~myeL~dP~tvMFFfrnkHm~vD~GTgnnnKin~~~~~kqefIDiie~iy 80 (102)
+|.+++++..+ .. ++.||+++-|+..+-|.+.-=+|++|| ++-.+ + .++.+. .+++++.+.|+...
T Consensus 57 ~l~~la~~~~~-v~~~~~~Vd~d~~~~la~~~~V~~iPT~~~f-k~G~~-v-------~~~~G~-~~~~~l~~~i~~~l 124 (142)
T 2es7_A 57 MIAELLREFPQ-FDWQVAVADLEQSEAIGDRFNVRRFPATLVF-TDGKL-R-------GALSGI-HPWAELLTLMRSIV 124 (142)
T ss_dssp HHHHHHHTCTT-SCCEEEEECHHHHHHHHHTTTCCSSSEEEEE-SCC------------CEESC-CCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcc-cceeEEEEECCCCHHHHHhcCCCcCCeEEEE-eCCEE-E-------EEEeCC-CCHHHHHHHHHHHh
Confidence 56677776633 45 789999999999999999765565555 55332 2 234443 35678888887654
No 82
>1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A {Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB: 1j08_A
Probab=76.13 E-value=14 Score=25.03 Aligned_cols=67 Identities=12% Similarity=0.126 Sum_probs=42.8
Q ss_pred hHHHHhHHhhh----cceEEEEEeCCCccchhhhccccCcceEEEEeeCceeEEecCCCCCceEEeecCChhHHHHHHHH
Q 034174 3 EVLSSVAETIK----NFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVET 78 (102)
Q Consensus 3 evL~~~a~~v~----~~a~IY~vDi~~Vpdfn~myeL~dP~tvMFFfrnkHm~vD~GTgnnnKin~~~~~kqefIDiie~ 78 (102)
..|.+++++.+ .-..++.+|+++-++..+-|.+.--+|+++| ++.... . ++.+. .+.++|.+.++.
T Consensus 154 p~~~~l~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~-~~G~~~-~-------~~~G~-~~~~~l~~~l~~ 223 (226)
T 1a8l_A 154 RMAHKFAIENTKAGKGKILGDMVEAIEYPEWADQYNVMAVPKIVIQ-VNGEDR-V-------EFEGA-YPEKMFLEKLLS 223 (226)
T ss_dssp HHHHHHHHHHHHTTCCCEEEEEEEGGGCHHHHHHTTCCSSCEEEEE-ETTEEE-E-------EEESC-CCHHHHHHHHHH
T ss_pred HHHHHHHHhcccccCCcEEEEEEEcccCHHHHHhCCCcccCeEEEE-eCCcee-E-------EEcCC-CCHHHHHHHHHH
Confidence 35667777776 3567889999999999999999765565444 443221 1 22332 345677777765
Q ss_pred H
Q 034174 79 V 79 (102)
Q Consensus 79 i 79 (102)
.
T Consensus 224 ~ 224 (226)
T 1a8l_A 224 A 224 (226)
T ss_dssp H
T ss_pred h
Confidence 4
No 83
>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A
Probab=75.38 E-value=4.1 Score=27.78 Aligned_cols=69 Identities=13% Similarity=0.262 Sum_probs=46.2
Q ss_pred hHHHHhHHhhhcc---eEEEEEeCCCccchhhhccccCcceEEEEeeCceeEEecCCCCCceEEeecCChhHHHHHHHHH
Q 034174 3 EVLSSVAETIKNF---AVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETV 79 (102)
Q Consensus 3 evL~~~a~~v~~~---a~IY~vDi~~Vpdfn~myeL~dP~tvMFFfrnkHm~vD~GTgnnnKin~~~~~kqefIDiie~i 79 (102)
..|.+++++.+.- ..++.||.++-+++.+-|.+.--+|+++|-+++.+ ++ .| ..+.+++...++..
T Consensus 52 p~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~g~~~--~~-~g--------~~~~~~l~~~i~~~ 120 (241)
T 3idv_A 52 PEYEKIANILKDKDPPIPVAKIDATSASVLASRFDVSGYPTIKILKKGQAV--DY-EG--------SRTQEEIVAKVREV 120 (241)
T ss_dssp HHHHHHHHHHHTSSSCCCEEEEETTTCHHHHHHTTCCSSSEEEEEETTEEE--EC-CS--------CSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCCceEEEEEeccCCHHHHHhcCCCcCCEEEEEcCCCcc--cc-cC--------cccHHHHHHHHhhc
Confidence 4577788877765 67889999999999999999765576666444433 32 22 23456666666665
Q ss_pred hhc
Q 034174 80 YRG 82 (102)
Q Consensus 80 yrg 82 (102)
-..
T Consensus 121 ~~~ 123 (241)
T 3idv_A 121 SQP 123 (241)
T ss_dssp HST
T ss_pred cCc
Confidence 443
No 84
>1sji_A Calsequestrin 2, calsequestrin, cardiac muscle isoform; glycoprotein, calcium-binding, muscle protein, metal binding protein; 2.40A {Canis lupus familiaris} PDB: 2vaf_A
Probab=73.10 E-value=7.1 Score=29.11 Aligned_cols=45 Identities=13% Similarity=0.211 Sum_probs=36.4
Q ss_pred HHHHhHHhhhcc-eEEEEEeCCCccchhhhccccCcceEEEEeeCc
Q 034174 4 VLSSVAETIKNF-AVIYLVDISEVPDFNTMYELYDPSTVMFFFRNK 48 (102)
Q Consensus 4 vL~~~a~~v~~~-a~IY~vDi~~Vpdfn~myeL~dP~tvMFFfrnk 48 (102)
++.++|+.++.- ..+..||.++-++..+-|.+.--+|+++|-+++
T Consensus 55 ~~~~~a~~~~~~~v~~~~Vd~~~~~~l~~~~~v~~~Pt~~~~~~g~ 100 (350)
T 1sji_A 55 VLELVAQVLEHKDIGFVMVDAKKEAKLAKKLGFDEEGSLYVLKGDR 100 (350)
T ss_dssp HHHHHHHHGGGSSEEEEEEETTTTHHHHHHHTCCSTTEEEEEETTE
T ss_pred HHHHHHHHHhhcCcEEEEEeCCCCHHHHHhcCCCccceEEEEECCc
Confidence 478888888764 788999999999999999998777876664444
No 85
>1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A {Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB: 1j08_A
Probab=72.63 E-value=12 Score=25.43 Aligned_cols=69 Identities=13% Similarity=0.190 Sum_probs=43.4
Q ss_pred hHHHHhHHhhhcceEEEEEeCCC--ccchhhhccccCcceEEEEeeCceeEEecCCCCCceEEeecCChhHHHHHHHHHh
Q 034174 3 EVLSSVAETIKNFAVIYLVDISE--VPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVY 80 (102)
Q Consensus 3 evL~~~a~~v~~~a~IY~vDi~~--Vpdfn~myeL~dP~tvMFFfrnkHm~vD~GTgnnnKin~~~~~kqefIDiie~iy 80 (102)
..|.++|+. +.-..+..||.++ -|+..+-|.+..-+|+++|-.++.. ..+..+ ..+.+++.+.++...
T Consensus 43 ~~~~~la~~-~~~v~~~~vd~~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~--------~~~~~G-~~~~~~l~~~l~~~l 112 (226)
T 1a8l_A 43 QLVQELSEL-TDKLSYEIVDFDTPEGKELAKRYRIDRAPATTITQDGKDF--------GVRYFG-LPAGHEFAAFLEDIV 112 (226)
T ss_dssp HHHHHHHTT-CTTEEEEEEETTSHHHHHHHHHTTCCSSSEEEEEETTBCC--------SEEEES-CCCTTHHHHHHHHHH
T ss_pred HHHHHHHhh-CCceEEEEEeCCCcccHHHHHHcCCCcCceEEEEcCCcee--------eEEEec-cCcHHHHHHHHHHHH
Confidence 456666654 4456788999998 8999999999776676565333321 122333 234567777777665
Q ss_pred h
Q 034174 81 R 81 (102)
Q Consensus 81 r 81 (102)
.
T Consensus 113 ~ 113 (226)
T 1a8l_A 113 D 113 (226)
T ss_dssp H
T ss_pred h
Confidence 4
No 86
>3f9u_A Putative exported cytochrome C biogenesis-related; exported cytochrome C biogenesis-related protein, bacteroide fragilis; 2.20A {Bacteroides fragilis nctc 9343}
Probab=72.02 E-value=6.1 Score=25.97 Aligned_cols=27 Identities=22% Similarity=0.234 Sum_probs=20.4
Q ss_pred eEEeecCChhHHHHHHHHHhhccccCc
Q 034174 61 KINWALKDKQEFIDIVETVYRGARKGR 87 (102)
Q Consensus 61 Kin~~~~~kqefIDiie~iyrgA~kGk 87 (102)
+..+..++.++|++.++.+-+...|+|
T Consensus 146 ~~~G~~~~~~~l~~~l~~~l~~~~~~~ 172 (172)
T 3f9u_A 146 KSYAYDEDISKYINFLQTGLENYRKEK 172 (172)
T ss_dssp CCBCSCCCHHHHHHHHHHHHHHHHHTC
T ss_pred eccCCCCCHHHHHHHHHHHHHHhhccC
Confidence 345666668999999999887766654
No 87
>3us3_A Calsequestrin-1; calcium-binding protein; 1.74A {Oryctolagus cuniculus} PDB: 1a8y_A 3v1w_A* 3trq_A* 3trp_A* 3uom_A
Probab=71.99 E-value=7.3 Score=29.63 Aligned_cols=46 Identities=15% Similarity=0.200 Sum_probs=36.2
Q ss_pred HHHHhHHhhhcc-eEEEEEeCCCccchhhhccccCcceEEEEeeCce
Q 034174 4 VLSSVAETIKNF-AVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKH 49 (102)
Q Consensus 4 vL~~~a~~v~~~-a~IY~vDi~~Vpdfn~myeL~dP~tvMFFfrnkH 49 (102)
.+.++|..++.- ..+..||.++-|+..+-|.+.--+|+++|-+++.
T Consensus 57 ~~e~~a~~~~~~~v~~~~Vd~~~~~~l~~~~~V~~~PTl~~f~~G~~ 103 (367)
T 3us3_A 57 ILELAAQVLEDKGVGFGLVDSEKDAAVAKKLGLTEEDSIYVFKEDEV 103 (367)
T ss_dssp HHHHHHHHHTTTTEEEEEEETTTTHHHHHHHTCCSTTEEEEEETTEE
T ss_pred HHHHHHHHhhcCCceEEEEeCcccHHHHHHcCCCcCceEEEEECCcE
Confidence 456777777653 7789999999999999999988888776655544
No 88
>2yj7_A LPBCA thioredoxin; oxidoreductase; 1.65A {Synthetic construct}
Probab=73.28 E-value=0.88 Score=26.67 Aligned_cols=42 Identities=17% Similarity=0.373 Sum_probs=30.6
Q ss_pred hHHHHhHHhhhcceEEEEEeCCCccchhhhccccCcceEEEE
Q 034174 3 EVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFF 44 (102)
Q Consensus 3 evL~~~a~~v~~~a~IY~vDi~~Vpdfn~myeL~dP~tvMFF 44 (102)
..|.+++++.++-..++.+|.++-+++.+-|.+.--+|+++|
T Consensus 39 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~ 80 (106)
T 2yj7_A 39 PIIEELAKEYEGKVKVVKVNVDENPNTAAQYGIRSIPTLLLF 80 (106)
Confidence 345666666664467788999999999999998665565555
No 89
>2dbc_A PDCL2, unnamed protein product; phosducin-like protein, thioredoxin_FOLD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=70.37 E-value=7.2 Score=25.15 Aligned_cols=70 Identities=10% Similarity=-0.033 Sum_probs=39.8
Q ss_pred hhHHHHhHHhhhcceEEEEEeCCCccchhhhccccCcceEEEEeeCceeEEecCCCCCceEEeecCChhHHHHHHHH
Q 034174 2 DEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVET 78 (102)
Q Consensus 2 DevL~~~a~~v~~~a~IY~vDi~~Vpdfn~myeL~dP~tvMFFfrnkHm~vD~GTgnnnKin~~~~~kqefIDiie~ 78 (102)
...|.+++++..+ ..++.||+++.+ +-|.+.--+|++||-+++-+.-=.|.-. +...=-+.+++...++.
T Consensus 49 ~p~l~~la~~~~~-v~~~~vd~~~~~---~~~~i~~~Pt~~~~~~G~~v~~~~G~~~---~~~~~~~~~~l~~~l~~ 118 (135)
T 2dbc_A 49 NQHLSVLARKFPE-TKFVKAIVNSCI---EHYHDNCLPTIFVYKNGQIEGKFIGIIE---CGGINLKLEELEWKLSE 118 (135)
T ss_dssp HHHHHHHHHHCSS-EEEEEECCSSSC---SSCCSSCCSEEEEESSSSCSEEEESTTT---TTCTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHCCC-cEEEEEEhhcCc---ccCCCCCCCEEEEEECCEEEEEEEeEEe---eCCCcCCHHHHHHHHHH
Confidence 3467777776644 567889998876 5677776667666644443322222110 00000156777777765
No 90
>1sen_A Thioredoxin-like protein P19; endoplasmic reticulum, RP19, structural genomics, PSI, protein structure initiative; 1.20A {Homo sapiens} SCOP: c.47.1.1 PDB: 2k8v_A
Probab=70.07 E-value=1.6 Score=29.51 Aligned_cols=68 Identities=6% Similarity=0.060 Sum_probs=39.1
Q ss_pred eEEEEEeCCCccc-hhhhccc--cCcceEEEE-eeCceeEEecCCCCCceEEeecCChhHHHHHHHHHhhcc
Q 034174 16 AVIYLVDISEVPD-FNTMYEL--YDPSTVMFF-FRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVYRGA 83 (102)
Q Consensus 16 a~IY~vDi~~Vpd-fn~myeL--~dP~tvMFF-frnkHm~vD~GTgnnnKin~~~~~kqefIDiie~iyrgA 83 (102)
..++.||+++-++ ..+.|.+ .--+|++|| -+++-+.-=.|.-....+.+...+.+++++.++.+....
T Consensus 79 ~~~~~v~~d~~~~~~~~~~~~~~~~~Pt~~~~d~~G~~~~~~~G~~~~~~~~~~~~~~~~l~~~l~~~l~~~ 150 (164)
T 1sen_A 79 HNFVMVNLEDEEEPKDEDFSPDGGYIPRILFLDPSGKVHPEIINENGNPSYKYFYVSAEQVVQGMKEAQERL 150 (164)
T ss_dssp TTSEEEEEEGGGSCSCGGGCTTCSCSSEEEEECTTSCBCTTCCCTTSCTTSTTCCCSHHHHHHHHHHHHHHH
T ss_pred CeEEEEEecCCchHHHHHhcccCCcCCeEEEECCCCCEEEEEeCCCCccchhcccCCHHHHHHHHHHHHHhc
Confidence 3456788877766 6777776 324554444 233433222333233333344678899999998876543
No 91
>2qc7_A ERP31, ERP28, endoplasmic reticulum protein ERP29; B domain (residues 33-153), D domain (residues 154-261), CHA; 2.90A {Homo sapiens} PDB: 1g7e_A 1g7d_A
Probab=69.84 E-value=5.3 Score=29.69 Aligned_cols=46 Identities=17% Similarity=0.229 Sum_probs=34.4
Q ss_pred hHHHHhHHhhh--cceEEEEEeCCC-----ccchhhhcccc--CcceEEEEeeCc
Q 034174 3 EVLSSVAETIK--NFAVIYLVDISE-----VPDFNTMYELY--DPSTVMFFFRNK 48 (102)
Q Consensus 3 evL~~~a~~v~--~~a~IY~vDi~~-----Vpdfn~myeL~--dP~tvMFFfrnk 48 (102)
.++.++|+.++ .=..|+.||+++ -|+..+-|.+. .-+|++||-+++
T Consensus 40 P~~e~lA~~~~~~~~v~~akVDvd~~g~~~~~~l~~~~~V~~~~~PTl~~f~~G~ 94 (240)
T 2qc7_A 40 DEFKRLAENSASSDDLLVAEVGISDYGDKLNMELSEKYKLDKESYPVFYLFRDGD 94 (240)
T ss_dssp HHHHHHHHHHTTCTTEEEEEECCCCSSSCCSHHHHHHTTCCGGGCSEEEEEETTC
T ss_pred HHHHHHHHHhcCCCCeEEEEEeCCcccchhhHHHHHHcCCCCCCCCEEEEEeCCC
Confidence 45677787775 246789999765 78899999998 788877775444
No 92
>1wou_A Thioredoxin -related protein, 14 kDa; electron transport; 1.80A {Homo sapiens} SCOP: c.47.1.16 PDB: 1v9w_A
Probab=68.91 E-value=3.9 Score=25.78 Aligned_cols=44 Identities=14% Similarity=0.181 Sum_probs=31.5
Q ss_pred hHHHHhHHhhhcceEEEEEeC-------CCccchhhhccccCcceEEEEeeC
Q 034174 3 EVLSSVAETIKNFAVIYLVDI-------SEVPDFNTMYELYDPSTVMFFFRN 47 (102)
Q Consensus 3 evL~~~a~~v~~~a~IY~vDi-------~~Vpdfn~myeL~dP~tvMFFfrn 47 (102)
..|.+++++.+.=..++.||+ ++-+++.+-|.+.--+|++| |++
T Consensus 51 p~l~~~~~~~~~~~~~~~vd~~~~~~~~d~~~~~~~~~~i~~~Pt~~~-~~~ 101 (123)
T 1wou_A 51 PVVREGLKHISEGCVFIYCQVGEKPYWKDPNNDFRKNLKVTAVPTLLK-YGT 101 (123)
T ss_dssp HHHHHHGGGCCTTEEEEEEECCCHHHHHCTTCHHHHHHCCCSSSEEEE-TTS
T ss_pred HHHHHHHHHcCCCcEEEEEECCCchhhhchhHHHHHHCCCCeeCEEEE-EcC
Confidence 356667776654467888999 78899988899976567544 444
No 93
>2djj_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp1_A
Probab=68.90 E-value=13 Score=22.41 Aligned_cols=65 Identities=11% Similarity=0.064 Sum_probs=36.9
Q ss_pred hHHHHhHHhhhc-----ceEEEEEeCCCccchhhhccccCcceEEEEeeCceeEEecCCCCCceEEeecCChhHHHHHHH
Q 034174 3 EVLSSVAETIKN-----FAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVE 77 (102)
Q Consensus 3 evL~~~a~~v~~-----~a~IY~vDi~~Vpdfn~myeL~dP~tvMFFfrnkHm~vD~GTgnnnKin~~~~~kqefIDiie 77 (102)
..|.+++++.+. -..++.||.++-+ ..+ .+.--+|+++|-+++.+.+. ++.+ ..+.++|.+.|+
T Consensus 45 p~~~~~~~~~~~~~~~~~v~~~~vd~~~~~-~~~--~v~~~Pt~~~~~~~~~~~~~-------~~~G-~~~~~~l~~~i~ 113 (121)
T 2djj_A 45 PKYEELGALYAKSEFKDRVVIAKVDATAND-VPD--EIQGFPTIKLYPAGAKGQPV-------TYSG-SRTVEDLIKFIA 113 (121)
T ss_dssp HHHHHHHHHHTTSSCTTSSEEEEEETTTSC-CSS--CCSSSSEEEEECSSCTTSCC-------CCCC-CSCHHHHHHHHH
T ss_pred HHHHHHHHHHhhcccCCceEEEEEECcccc-ccc--ccCcCCeEEEEeCcCCCCce-------EecC-CCCHHHHHHHHH
Confidence 457778888765 4677889988755 333 66555565555333221111 2222 235677777776
Q ss_pred H
Q 034174 78 T 78 (102)
Q Consensus 78 ~ 78 (102)
.
T Consensus 114 ~ 114 (121)
T 2djj_A 114 E 114 (121)
T ss_dssp H
T ss_pred h
Confidence 4
No 94
>3q6o_A Sulfhydryl oxidase 1; protein disulfide isomerase, thioredoxin, thioredoxin fold, oxidoreductase, reductive methylation; HET: MLY; 2.05A {Homo sapiens}
Probab=68.80 E-value=9.5 Score=26.74 Aligned_cols=43 Identities=19% Similarity=0.223 Sum_probs=33.3
Q ss_pred hHHHHhHHhhhc---ceEEEEEeC--CCccchhhhccccCcceEEEEe
Q 034174 3 EVLSSVAETIKN---FAVIYLVDI--SEVPDFNTMYELYDPSTVMFFF 45 (102)
Q Consensus 3 evL~~~a~~v~~---~a~IY~vDi--~~Vpdfn~myeL~dP~tvMFFf 45 (102)
..+.+++++.+. -..++.||. ++-++..+-|.+.--+|++||-
T Consensus 50 p~~~~l~~~~~~~~~~v~~~~vd~~~~~~~~l~~~~~v~~~Pt~~~~~ 97 (244)
T 3q6o_A 50 PTWXALAEDVKAWRPALYLAALDCAEETNSAVCRDFNIPGFPTVRFFX 97 (244)
T ss_dssp HHHHHHHHHTGGGTTTEEEEEEETTSTTTHHHHHHTTCCSSSEEEEEC
T ss_pred HHHHHHHHHHHhccCcEEEEEEeCCchhhHHHHHHcCCCccCEEEEEe
Confidence 356778888876 678899998 7789999999997766755554
No 95
>2c0g_A ERP29 homolog, windbeutel protein; PDI-dbeta, PDI, protein disulfide isomerase, PIPE, dorsal-ventral patterning, chaperone, WIND mutants; 1.75A {Drosophila melanogaster} SCOP: a.71.1.1 c.47.1.7 PDB: 1ovn_A 2c0f_A 2c1y_A 2c0e_A
Probab=65.99 E-value=8.2 Score=28.90 Aligned_cols=68 Identities=10% Similarity=0.165 Sum_probs=45.4
Q ss_pred hHHHHhHHhhh---cceEEEEEeCCC-----ccchhhhcccc--CcceEEEEeeCc-eeEEecC-CCCCceEEeecCChh
Q 034174 3 EVLSSVAETIK---NFAVIYLVDISE-----VPDFNTMYELY--DPSTVMFFFRNK-HIMIDLG-TGNNNKINWALKDKQ 70 (102)
Q Consensus 3 evL~~~a~~v~---~~a~IY~vDi~~-----Vpdfn~myeL~--dP~tvMFFfrnk-Hm~vD~G-TgnnnKin~~~~~kq 70 (102)
.++.++|+..+ .=..|+-||+++ -|+..+-|.+. .-+|++||- ++ .-..++- +| -.+++
T Consensus 51 P~~e~lA~~~~~~~~~v~~akVD~d~~g~~~n~~la~~~~V~~~~~PTl~~F~-G~~~~~~~y~~~G--------~~~~~ 121 (248)
T 2c0g_A 51 EAFTAFSKSAHKATKDLLIATVGVKDYGELENKALGDRYKVDDKNFPSIFLFK-GNADEYVQLPSHV--------DVTLD 121 (248)
T ss_dssp HHHHHHHHHHHHHCSSEEEEEEEECSSTTCTTHHHHHHTTCCTTSCCEEEEES-SSSSSEEECCTTS--------CCCHH
T ss_pred HHHHHHHHHHhccCCCeEEEEEECCcccccccHHHHHHhCCCcCCCCeEEEEe-CCcCcceeecccC--------CCCHH
Confidence 45677888774 357889999988 89999999998 778877775 55 2233331 12 23456
Q ss_pred HHHHHHHHH
Q 034174 71 EFIDIVETV 79 (102)
Q Consensus 71 efIDiie~i 79 (102)
+|.+.|+..
T Consensus 122 ~L~~fi~~~ 130 (248)
T 2c0g_A 122 NLKAFVSAN 130 (248)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 666666653
No 96
>2hls_A Protein disulfide oxidoreductase; thioredoxin fold; 1.93A {Aeropyrum pernix}
Probab=64.00 E-value=15 Score=26.41 Aligned_cols=66 Identities=14% Similarity=0.135 Sum_probs=41.1
Q ss_pred hHHHHhHHhhhcc-----eEEEEEeCCCccchhhhccccCcceEEEEeeCceeEEecCCCCCceEEeecCChhHHHHHHH
Q 034174 3 EVLSSVAETIKNF-----AVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVE 77 (102)
Q Consensus 3 evL~~~a~~v~~~-----a~IY~vDi~~Vpdfn~myeL~dP~tvMFFfrnkHm~vD~GTgnnnKin~~~~~kqefIDiie 77 (102)
++|.++|+.-.++ ..+..+|.++-|+..+-|.+..-+|+.+| ++ .-+..+ ..+++++-+.++
T Consensus 47 ~~l~ela~~~~~~~~~~~v~~~~vd~d~~~~~~~~~gv~~~Pt~~i~-~g-----------~~~~~G-~~~~~~l~~fv~ 113 (243)
T 2hls_A 47 RLMKLFEEESPTRNGGKLLKLNVYYRESDSDKFSEFKVERVPTVAFL-GG-----------EVRWTG-IPAGEEIRALVE 113 (243)
T ss_dssp HHHHHHHHHSCEETTEESEEEEEEETTTTHHHHHHTTCCSSSEEEET-TT-----------TEEEES-CCCTTHHHHHHH
T ss_pred HHHHHHHHhccCCCCCceeEEEEecCCcCHHHHHhcCCCcCCEEEEE-CC-----------ceeEcC-CCcHHHHHHHHH
Confidence 3455666542222 66788999999999999999876676555 32 222222 235567777776
Q ss_pred HHhh
Q 034174 78 TVYR 81 (102)
Q Consensus 78 ~iyr 81 (102)
....
T Consensus 114 ~~l~ 117 (243)
T 2hls_A 114 VIMR 117 (243)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 6654
No 97
>2zci_A Phosphoenolpyruvate carboxykinase [GTP], phosphoenolpyruvate; GTP-dependent, signaling protein, lyase; 2.30A {Corynebacterium glutamicum}
Probab=63.60 E-value=5.3 Score=34.94 Aligned_cols=37 Identities=32% Similarity=0.465 Sum_probs=29.9
Q ss_pred EecCCCCCceEEeecCChhHHHHHHHHHhhccccCceeEEccC
Q 034174 52 IDLGTGNNNKINWALKDKQEFIDIVETVYRGARKGRGLVIAPK 94 (102)
Q Consensus 52 vD~GTgnnnKin~~~~~kqefIDiie~iyrgA~kGkgiv~sP~ 94 (102)
-|.|..|| --+.+|+...+...|+|.||||.+-+-|.
T Consensus 95 ~dagptnn------w~~p~e~~~~l~~~f~G~M~GRTMYViPf 131 (610)
T 2zci_A 95 EDAGPTNN------WAPPQAMKDEMSKHYAGSMKGRTMYVVPF 131 (610)
T ss_dssp TTTCTTSC------CCCHHHHHHHHHHHHTTTTTTSEEEEEEE
T ss_pred hhcCCCcC------ccCHHHHHHHHHHhCCcccCCCEEEEEee
Confidence 35555555 34789999999999999999999988774
No 98
>2fgx_A Putative thioredoxin; NET3, NESG, GFT-glutaredoxin-like, structural genomics, PSI, protein structure initiative; NMR {Nitrosomonas europaea}
Probab=62.12 E-value=4.4 Score=26.93 Aligned_cols=45 Identities=11% Similarity=0.177 Sum_probs=31.8
Q ss_pred hHHHHhHHhhhcceEEEEEeCCCccchhhhccccCcceEEEEeeCcee
Q 034174 3 EVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHI 50 (102)
Q Consensus 3 evL~~~a~~v~~~a~IY~vDi~~Vpdfn~myeL~dP~tvMFFfrnkHm 50 (102)
++|.+++++.. ..+..+|+++-|+.-+-|.+.-| ++++|-.++++
T Consensus 48 ~~L~~l~~e~~--i~~~~vDId~d~~l~~~ygv~VP-~l~~~~dG~~v 92 (107)
T 2fgx_A 48 ASLRVLQKKSW--FELEVINIDGNEHLTRLYNDRVP-VLFAVNEDKEL 92 (107)
T ss_dssp HHHHHHHHHSC--CCCEEEETTTCHHHHHHSTTSCS-EEEETTTTEEE
T ss_pred HHHHHHHHhcC--CeEEEEECCCCHHHHHHhCCCCc-eEEEEECCEEE
Confidence 45666666543 56678999999988877887644 55677677765
No 99
>2r2j_A Thioredoxin domain-containing protein 4; CRFS motif, chaperone, endoplasmic reticulum, S response; 2.60A {Homo sapiens}
Probab=61.28 E-value=13 Score=28.11 Aligned_cols=48 Identities=21% Similarity=0.313 Sum_probs=34.8
Q ss_pred hHHHHhHHhhh------cceEEEEEeCCCccchhhhccccCcceEEEEeeCcee
Q 034174 3 EVLSSVAETIK------NFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHI 50 (102)
Q Consensus 3 evL~~~a~~v~------~~a~IY~vDi~~Vpdfn~myeL~dP~tvMFFfrnkHm 50 (102)
..+.++|++++ .-..+..||.++-++..+-|.+.--+|++||-+++.+
T Consensus 42 p~~~~~a~~~~~~~~~~~~v~~~~Vd~~~~~~l~~~~~v~~~Pt~~~f~~G~~~ 95 (382)
T 2r2j_A 42 PIFEEASDVIKEEFPNENQVVFARVDCDQHSDIAQRYRISKYPTLKLFRNGMMM 95 (382)
T ss_dssp HHHHHHHHHHTTCC---CCEEEEEEETTTCHHHHHHTTCCEESEEEEEETTEEE
T ss_pred HHHHHHHHHHHhhcCCCCceEEEEEECCccHHHHHhcCCCcCCEEEEEeCCcEe
Confidence 34667777773 3478899999999999999999776676655434433
No 100
>2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A
Probab=57.89 E-value=11 Score=29.30 Aligned_cols=46 Identities=15% Similarity=0.127 Sum_probs=36.0
Q ss_pred hHHHHhHHhhhcc-eEEEEEeCCCccchhhhccccCcceEEEEeeCc
Q 034174 3 EVLSSVAETIKNF-AVIYLVDISEVPDFNTMYELYDPSTVMFFFRNK 48 (102)
Q Consensus 3 evL~~~a~~v~~~-a~IY~vDi~~Vpdfn~myeL~dP~tvMFFfrnk 48 (102)
..+.++|++++.. ..+..||.++-++..+-|.+.--+|++||-+++
T Consensus 51 p~~~~~a~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~g~ 97 (504)
T 2b5e_A 51 PEYVKAAETLVEKNITLAQIDCTENQDLCMEHNIPGFPSLKIFKNSD 97 (504)
T ss_dssp HHHHHHHHHTTTTTCEEEEEETTTCHHHHHHTTCCSSSEEEEEETTC
T ss_pred HHHHHHHHHhccCCeEEEEEECCCCHHHHHhcCCCcCCEEEEEeCCc
Confidence 3567888888876 888999999999999999997666765554333
No 101
>3ed3_A Protein disulfide-isomerase MPD1; thioredoxin-like domain, CXXC, endoplasmic reticulum, glycoprotein, redox-active center; 2.00A {Saccharomyces cerevisiae}
Probab=57.37 E-value=13 Score=27.72 Aligned_cols=46 Identities=15% Similarity=0.231 Sum_probs=34.8
Q ss_pred hHHHHhHHhhhcceEEEEEeCC--CccchhhhccccCcceEEEEeeCc
Q 034174 3 EVLSSVAETIKNFAVIYLVDIS--EVPDFNTMYELYDPSTVMFFFRNK 48 (102)
Q Consensus 3 evL~~~a~~v~~~a~IY~vDi~--~Vpdfn~myeL~dP~tvMFFfrnk 48 (102)
..+.+++++++.-..+..||++ +-+++.+-|.+.--+|+++|-+++
T Consensus 55 p~~~~la~~~~~~~~~~~v~~d~~~~~~l~~~~~I~~~Pt~~~~~~g~ 102 (298)
T 3ed3_A 55 STFRKAAKRLDGVVQVAAVNCDLNKNKALCAKYDVNGFPTLMVFRPPK 102 (298)
T ss_dssp HHHHHHHHHTTTTSEEEEEETTSTTTHHHHHHTTCCBSSEEEEEECCC
T ss_pred HHHHHHHHHccCCcEEEEEEccCccCHHHHHhCCCCccceEEEEECCc
Confidence 3567888888776778888877 678999999998767766665554
No 102
>1a0r_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; HET: FAR; 2.80A {Bos taurus} SCOP: c.47.1.6 PDB: 1b9y_C 1b9x_C
Probab=57.10 E-value=9.8 Score=28.35 Aligned_cols=45 Identities=9% Similarity=0.068 Sum_probs=32.2
Q ss_pred hhHHHHhHHhhhcceEEEEEeCCCccchhhhccccCcceEEEEeeCc
Q 034174 2 DEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNK 48 (102)
Q Consensus 2 DevL~~~a~~v~~~a~IY~vDi~~Vpdfn~myeL~dP~tvMFFfrnk 48 (102)
..+|.++|.+..+ ..++-||+++ +++.+-|.+.--+|++||-+++
T Consensus 152 ~p~l~~La~~~~~-v~f~kVd~d~-~~l~~~~~I~~~PTll~~~~G~ 196 (245)
T 1a0r_P 152 NSSLICLAAEYPM-VKFCKIKASN-TGAGDRFSSDVLPTLLVYKGGE 196 (245)
T ss_dssp HHHHHHHHHHCTT-SEEEEEEHHH-HCCTTSSCTTTCSEEEEEETTE
T ss_pred HHHHHHHHHHCCC-CEEEEEeCCc-HHHHHHCCCCCCCEEEEEECCE
Confidence 4567788887766 6778899887 8888888887666765554333
No 103
>3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A
Probab=56.40 E-value=13 Score=28.63 Aligned_cols=45 Identities=18% Similarity=0.224 Sum_probs=35.7
Q ss_pred hHHHHhHHhhhcceEEEEEeCCCccchhhhccccCcceEEEEeeCc
Q 034174 3 EVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNK 48 (102)
Q Consensus 3 evL~~~a~~v~~~a~IY~vDi~~Vpdfn~myeL~dP~tvMFFfrnk 48 (102)
..+.++|++++.-..++.||.++-++..+-|.+.--+|++|| ++.
T Consensus 41 p~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Ptl~~~-~~g 85 (481)
T 3f8u_A 41 PEYEAAATRLKGIVPLAKVDCTANTNTCNKYGVSGYPTLKIF-RDG 85 (481)
T ss_dssp HHHHHHHHHTTTTCCEEEEETTTCHHHHHHTTCCEESEEEEE-ETT
T ss_pred HHHHHHHHHhcCceEEEEEECCCCHHHHHhcCCCCCCEEEEE-eCC
Confidence 457788888877778899999999999999999654576666 544
No 104
>3ph9_A Anterior gradient protein 3 homolog; thioredoxin fold, protein disulfide isomerase, endoplasmic R isomerase; 1.83A {Homo sapiens} SCOP: c.47.1.0 PDB: 2lns_A 2lnt_A
Probab=55.96 E-value=7.2 Score=26.83 Aligned_cols=65 Identities=15% Similarity=0.071 Sum_probs=33.9
Q ss_pred EEEeCC-CccchhhhccccCcceEEEEe-eCceeEEecCCCCCceEEeecCChhHHHHHHHHHhhcc
Q 034174 19 YLVDIS-EVPDFNTMYELYDPSTVMFFF-RNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVYRGA 83 (102)
Q Consensus 19 Y~vDi~-~Vpdfn~myeL~dP~tvMFFf-rnkHm~vD~GTgnnnKin~~~~~kqefIDiie~iyrgA 83 (102)
+.|+++ +-++-..-|+..-.+|++||= +++-+.-=.|...+....|.-.+.+++++-++.+++-.
T Consensus 81 v~V~vD~e~~~~~~~~~v~~~PT~~f~~~~G~~v~~~~G~~~~~~~~~~~~~~~~ll~~~~~al~~~ 147 (151)
T 3ph9_A 81 IMLNLMHETTDKNLSPDGQYVPRIMFVDPSLTVRADIAGRYSNRLYTYEPRDLPLLIENMKKALRLI 147 (151)
T ss_dssp EEEEESSCCSCGGGCTTCCCSSEEEEECTTSCBCTTCCCSCTTSTTCCCGGGHHHHHHHHHHHHSCC
T ss_pred EEEEecCCchhhHhhcCCCCCCEEEEECCCCCEEEEEeCCcCCcccccchhhHHHHHHHHHHHHHHH
Confidence 444543 334445566676677755553 23332212343334444455566677777777666544
No 105
>3mjd_A Orotate phosphoribosyltransferase; IDP02311, csgid, structural genomics, center for structural genomics of infectious diseases; 1.90A {Francisella tularensis}
Probab=53.49 E-value=4.5 Score=30.35 Aligned_cols=23 Identities=30% Similarity=0.446 Sum_probs=12.6
Q ss_pred EEecCCCCCceEEeecCChhHHHHHHHH
Q 034174 51 MIDLGTGNNNKINWALKDKQEFIDIVET 78 (102)
Q Consensus 51 ~vD~GTgnnnKin~~~~~kqefIDiie~ 78 (102)
-+|+||||++ |.++++|++++..
T Consensus 10 ~~~~~~~~~~-----~~~~~~~~~~l~~ 32 (232)
T 3mjd_A 10 GVDLGTENLY-----FQSNAMFIEFALK 32 (232)
T ss_dssp -------CCS-----SCCCCCHHHHHHH
T ss_pred ccccCCCCCC-----CCcHHHHHHHHHH
Confidence 4899999985 7888999887654
No 106
>3qcp_A QSOX from trypanosoma brucei (tbqsox); ERV fold, thioredoxin fold, sulfhydryl oxidase, oxidoreducta; HET: FAD; 2.30A {Trypanosoma brucei} PDB: 3qd9_A*
Probab=52.44 E-value=37 Score=28.04 Aligned_cols=76 Identities=16% Similarity=0.242 Sum_probs=49.0
Q ss_pred HHHHhHHhhhc--------ceEEEEEeCCCccchhhhccccCcceEEEEeeCceeEEecCCCCC--ceEEee--cCChhH
Q 034174 4 VLSSVAETIKN--------FAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNN--NKINWA--LKDKQE 71 (102)
Q Consensus 4 vL~~~a~~v~~--------~a~IY~vDi~~Vpdfn~myeL~dP~tvMFFfrnkHm~vD~GTgnn--nKin~~--~~~kqe 71 (102)
.+.+++++.++ -..++.||+++-|+..+-|.+.-.+|++||-+++-....--.|.. ..+.|. .-++++
T Consensus 63 ~l~~la~~~~~~~g~~~~~~v~f~~VD~d~~~~la~~y~V~~~PTlilf~~gg~~~~~~y~G~r~~e~L~fI~k~l~~~e 142 (470)
T 3qcp_A 63 TFSKFAGGLKVEHGKDALQIATAAAVNCASEVDLCRKYDINFVPRLFFFYPRDSCRSNEECGTSSLEHVAFENSHLEVDE 142 (470)
T ss_dssp HHHHHHHTSCCSSCSSGGGGCEEEEEETTTCHHHHHHTTCCSSCEEEEEEESSCCCTTSCCCCCCEEEEECSCTTCCHHH
T ss_pred HHHHHHHHHhhhcccccCceEEEEEEECCCCHHHHHHcCCCccCeEEEEECCCceEEEEeeCCCCHHHHHHHHHhcCHHH
Confidence 56677776652 367899999999999999999888887777665543333334433 224343 124566
Q ss_pred HHHHHHHH
Q 034174 72 FIDIVETV 79 (102)
Q Consensus 72 fIDiie~i 79 (102)
+...++.+
T Consensus 143 Le~~~e~L 150 (470)
T 3qcp_A 143 LESEVRRL 150 (470)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66666644
No 107
>1zma_A Bacterocin transport accessory protein; alpha-beta-alpha-sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.25A {Streptococcus pneumoniae} SCOP: c.47.1.1
Probab=51.88 E-value=37 Score=20.55 Aligned_cols=42 Identities=24% Similarity=0.371 Sum_probs=25.0
Q ss_pred HHHHhHHhhhcceEEEEEeCCCc------cchhhhccccCcceEEEEeeCc
Q 034174 4 VLSSVAETIKNFAVIYLVDISEV------PDFNTMYELYDPSTVMFFFRNK 48 (102)
Q Consensus 4 vL~~~a~~v~~~a~IY~vDi~~V------pdfn~myeL~dP~tvMFFfrnk 48 (102)
.|.+++++.+ ..++.+|+++- +++.+-|.+.--+|+++| ++.
T Consensus 50 ~l~~~~~~~~--~~v~~~~~~~~~~~~~~~~~~~~~~i~~~Pt~~~~-~~G 97 (118)
T 1zma_A 50 TLSGVVAETK--AHIYFINSEEPSQLNDLQAFRSRYGIPTVPGFVHI-TDG 97 (118)
T ss_dssp HHHHHHHHHC--CCCEEEETTCGGGHHHHHHHHHHHTCCSSCEEEEE-ETT
T ss_pred HHHHHHHhcC--CeEEEEECCCcCcHHHHHHHHHHcCCCCCCeEEEE-ECC
Confidence 4555665543 24566766543 466677888766676555 443
No 108
>2kuc_A Putative disulphide-isomerase; structural genomics, thioredo PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=51.50 E-value=39 Score=20.60 Aligned_cols=66 Identities=18% Similarity=0.224 Sum_probs=37.5
Q ss_pred HHhHHhhhcceEEEEEeCC--CccchhhhccccCcceEEEEeeCceeEEecCCCCCceEEeecCChhHHHHHHHHHh
Q 034174 6 SSVAETIKNFAVIYLVDIS--EVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVY 80 (102)
Q Consensus 6 ~~~a~~v~~~a~IY~vDi~--~Vpdfn~myeL~dP~tvMFFfrnkHm~vD~GTgnnnKin~~~~~kqefIDiie~iy 80 (102)
..+++..+.-..++.+|.+ +-+++.+.|.+.--+|+++|=++..+. .++.+ ..+.++|.+.++..-
T Consensus 53 ~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~v~~~Pt~~~~d~~G~~~--------~~~~G-~~~~~~l~~~l~~~~ 120 (130)
T 2kuc_A 53 SLVADYFNRHFVNLKMDMEKGEGVELRKKYGVHAYPTLLFINSSGEVV--------YRLVG-AEDAPELLKKVKLGV 120 (130)
T ss_dssp HHHHHHHHHHSEEEEECSSSTTHHHHHHHTTCCSSCEEEEECTTSCEE--------EEEES-CCCHHHHHHHHHHHH
T ss_pred HHHHHHHhcCeEEEEEecCCcchHHHHHHcCCCCCCEEEEECCCCcEE--------EEecC-CCCHHHHHHHHHHHH
Confidence 3444444444567788887 577888889987655643431221111 11222 235678888887653
No 109
>3ira_A Conserved protein; methanosarcina mazei,structural genomics, MCSG, protein structure initiative, midwest center for STRU genomics; 2.10A {Methanosarcina mazei}
Probab=50.64 E-value=37 Score=23.93 Aligned_cols=38 Identities=24% Similarity=0.232 Sum_probs=25.3
Q ss_pred HhHHhhhcceEEEEEeCCCccchhhhc--------cccCcceEEEE
Q 034174 7 SVAETIKNFAVIYLVDISEVPDFNTMY--------ELYDPSTVMFF 44 (102)
Q Consensus 7 ~~a~~v~~~a~IY~vDi~~Vpdfn~my--------eL~dP~tvMFF 44 (102)
++++.+.+-.+++-||+++-|+..+.| .+.-.+|++||
T Consensus 66 ~va~~l~~~fv~ikVD~de~~~l~~~y~~~~q~~~gv~g~Pt~v~l 111 (173)
T 3ira_A 66 EVAGLMNEAFVSIKVDREERPDIDNIYMTVCQIILGRGGWPLNIIM 111 (173)
T ss_dssp HHHHHHHHHCEEEEEETTTCHHHHHHHHHHHHHHHSCCCSSEEEEE
T ss_pred HHHHHHHhcCceeeeCCcccCcHHHHHHHHHHHHcCCCCCcceeeE
Confidence 455555544566789999999988777 56544554444
No 110
>2fwh_A Thiol:disulfide interchange protein DSBD; thioredoxin-like, C-terminal domain, reduced form at PH7, oxidoreductase; 0.99A {Escherichia coli} SCOP: c.47.1.1 PDB: 2fwe_A 2fwf_A 2fwg_A 1vrs_D 1uc7_A
Probab=50.54 E-value=11 Score=24.00 Aligned_cols=63 Identities=11% Similarity=0.223 Sum_probs=37.4
Q ss_pred HHhHHhhhcceEEEEEeC----CCccchhhhccccCcceEEEEe-eCceeE-EecCCCCCceEEeecCChhHHHHHHHH
Q 034174 6 SSVAETIKNFAVIYLVDI----SEVPDFNTMYELYDPSTVMFFF-RNKHIM-IDLGTGNNNKINWALKDKQEFIDIVET 78 (102)
Q Consensus 6 ~~~a~~v~~~a~IY~vDi----~~Vpdfn~myeL~dP~tvMFFf-rnkHm~-vD~GTgnnnKin~~~~~kqefIDiie~ 78 (102)
.+++++.++ ..++.||+ ++-+++.+-|.+.--+|+ +|| ++..+. . .++.+. .++++|.+.++.
T Consensus 57 ~~l~~~~~~-~~~~~vd~~~~~~~~~~l~~~~~v~~~Pt~-~~~d~~G~~v~~-------~~~~G~-~~~~~l~~~l~~ 125 (134)
T 2fwh_A 57 PQVQKALAD-TVLLQANVTANDAQDVALLKHLNVLGLPTI-LFFDGQGQEHPQ-------ARVTGF-MDAETFSAHLRD 125 (134)
T ss_dssp HHHHHHTTT-SEEEEEECTTCCHHHHHHHHHTTCCSSSEE-EEECTTSCBCGG-------GCBCSC-CCHHHHHHHHHH
T ss_pred HHHHHHhcC-cEEEEEeCCCCcchHHHHHHHcCCCCCCEE-EEECCCCCEeee-------eeeeec-cCHHHHHHHHHh
Confidence 566777777 66788998 556778888888655564 444 221110 0 123333 356788777764
No 111
>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}
Probab=50.50 E-value=13 Score=30.70 Aligned_cols=47 Identities=13% Similarity=0.142 Sum_probs=30.0
Q ss_pred hHHHHhHHhhhcceEEEEEeCCCccchhhhccccCcceEEEEeeCcee
Q 034174 3 EVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHI 50 (102)
Q Consensus 3 evL~~~a~~v~~~a~IY~vDi~~Vpdfn~myeL~dP~tvMFFfrnkHm 50 (102)
..+.++|++++.-..++.||.++-++..+-|.+.--+|++|| ++...
T Consensus 153 p~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~-~~g~~ 199 (780)
T 3apo_A 153 PTWREFAKEVDGLLRIGAVNCGDDRMLCRMKGVNSYPSLFIF-RSGMA 199 (780)
T ss_dssp HHHHHHHHHTTTTSEEEEEETTTCSSCC--------CEEEEE-CTTSC
T ss_pred HHHHHHHHHhcCceEEEEEeCCCcHHHHHHcCCceeeeEEEE-eCCcE
Confidence 356778888887788999999999999999999766686555 55443
No 112
>2faf_A Phosphoenolpyruvate carboxykinase; pepck, phosphoryl transfer, lyase; HET: 20S EPE 1PE; 1.70A {Gallus gallus} PDB: 2fah_A* 2qzy_A*
Probab=46.61 E-value=12 Score=32.74 Aligned_cols=28 Identities=25% Similarity=0.413 Sum_probs=25.1
Q ss_pred CChhHHHHHHHHHhhccccCceeEEccC
Q 034174 67 KDKQEFIDIVETVYRGARKGRGLVIAPK 94 (102)
Q Consensus 67 ~~kqefIDiie~iyrgA~kGkgiv~sP~ 94 (102)
-+.+|+-..+...|+|.||||.+-+-|.
T Consensus 104 ~~p~e~~~~l~~~f~G~M~GRTMYViPF 131 (608)
T 2faf_A 104 MSPNAFQAAVQERFPGCMAGRPLYVIPF 131 (608)
T ss_dssp ECHHHHHHHHHHHSTTTTTTSEEEEEEE
T ss_pred CCHHHHHHHHHHhCCcccCCCEEEEEee
Confidence 3778999999999999999999988774
No 113
>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}
Probab=45.48 E-value=63 Score=26.64 Aligned_cols=71 Identities=13% Similarity=0.080 Sum_probs=49.0
Q ss_pred hHHHHhHHhhhcceEEEEEeCCCccchhhhccccCcceEEEEeeCceeEEecCCCCCceEEee---cCChhHHHHHHHHH
Q 034174 3 EVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWA---LKDKQEFIDIVETV 79 (102)
Q Consensus 3 evL~~~a~~v~~~a~IY~vDi~~Vpdfn~myeL~dP~tvMFFfrnkHm~vD~GTgnnnKin~~---~~~kqefIDiie~i 79 (102)
..|.+++++.+.-..+..+|.++-|+..+.|.+..-+|+++| ++... -.++.+. -.+.+++.+.|+..
T Consensus 695 p~~~~la~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~-~~g~~--------~~~~~G~~~g~~~~~~l~~~l~~~ 765 (780)
T 3apo_A 695 PEFELLARMIKGKVRAGKVDCQAYPQTCQKAGIKAYPSVKLY-QYERA--------KKSIWEEQINSRDAKTIAALIYGK 765 (780)
T ss_dssp HHHHHHHHHHTTTCEEEEEETTTCHHHHHHTTCCSSSEEEEE-EEETT--------TTEEEEEEECCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCceEEEEECCCCHHHHHhcCCCcCCEEEEE-cCCCc--------cccccCcccCCcCHHHHHHHHHHH
Confidence 356777777765567899999999999999999765675555 43211 1234443 35778999998887
Q ss_pred hhc
Q 034174 80 YRG 82 (102)
Q Consensus 80 yrg 82 (102)
-..
T Consensus 766 l~~ 768 (780)
T 3apo_A 766 LET 768 (780)
T ss_dssp TTC
T ss_pred HHH
Confidence 644
No 114
>2lst_A Thioredoxin; structural genomics, NEW YORK structural genomics research consortium, oxidoreductase; NMR {Thermus thermophilus}
Probab=51.13 E-value=4.5 Score=25.14 Aligned_cols=73 Identities=14% Similarity=0.231 Sum_probs=40.4
Q ss_pred HHhHHhhhcceEEEEEeC--CCccchhhhccccCcceEEEEe-e-CceeEEecCCCCCceEEeecCChhHHHHHHHHHhh
Q 034174 6 SSVAETIKNFAVIYLVDI--SEVPDFNTMYELYDPSTVMFFF-R-NKHIMIDLGTGNNNKINWALKDKQEFIDIVETVYR 81 (102)
Q Consensus 6 ~~~a~~v~~~a~IY~vDi--~~Vpdfn~myeL~dP~tvMFFf-r-nkHm~vD~GTgnnnKin~~~~~kqefIDiie~iyr 81 (102)
.++++..++-..++.||+ ++-+++.+.|.+.--+|++||= + ++-..+. ++.+. .+.++|...++.+-.
T Consensus 45 ~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~v~~~Pt~~~~d~~~G~~~~~~-------~~~G~-~~~~~l~~~l~~~~~ 116 (130)
T 2lst_A 45 PGVSRLLEARFVVASVSVDTPEGQELARRYRVPGTPTFVFLVPKAGAWEEVG-------RLFGS-RPRAEFLKELRQVCV 116 (130)
Confidence 445555555455677887 4668888888886555644441 2 2210011 12222 345778888877665
Q ss_pred ccccC
Q 034174 82 GARKG 86 (102)
Q Consensus 82 gA~kG 86 (102)
+...|
T Consensus 117 ~~~~~ 121 (130)
T 2lst_A 117 KGGAC 121 (130)
Confidence 55443
No 115
>2lrn_A Thiol:disulfide interchange protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, oxidoreductase; NMR {Bacteroides SP}
Probab=44.42 E-value=57 Score=20.47 Aligned_cols=71 Identities=21% Similarity=0.246 Sum_probs=42.3
Q ss_pred HHHHhHHhhhcc-eEEEEEeCCC-------------------------ccchhhhccccCcceEEEEeeCceeEEecCCC
Q 034174 4 VLSSVAETIKNF-AVIYLVDISE-------------------------VPDFNTMYELYDPSTVMFFFRNKHIMIDLGTG 57 (102)
Q Consensus 4 vL~~~a~~v~~~-a~IY~vDi~~-------------------------Vpdfn~myeL~dP~tvMFFfrnkHm~vD~GTg 57 (102)
.|.+++++.+.- ..|+.|++++ -..+.+.|.+.--+|+ |++.
T Consensus 50 ~l~~l~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~v~~~P~~-~lid----------- 117 (152)
T 2lrn_A 50 YLLKTYNAFKDKGFTIYGVSTDRREEDWKKAIEEDKSYWNQVLLQKDDVKDVLESYCIVGFPHI-ILVD----------- 117 (152)
T ss_dssp HHHHHHHHHTTTTEEEEEEECCSCHHHHHHHHHHHTCCSEEEEECHHHHHHHHHHTTCCSSCEE-EEEC-----------
T ss_pred HHHHHHHHhccCCeEEEEEEccCCHHHHHHHHHHhCCCCeEEecccchhHHHHHHhCCCcCCeE-EEEC-----------
Confidence 356666666553 6677788776 3445556666433342 4441
Q ss_pred CCceEEeecCChhHHHHHHHHHhhccccC
Q 034174 58 NNNKINWALKDKQEFIDIVETVYRGARKG 86 (102)
Q Consensus 58 nnnKin~~~~~kqefIDiie~iyrgA~kG 86 (102)
.+-++.+..-+.+++.+.++.+-.++..+
T Consensus 118 ~~G~i~~~~~~~~~l~~~l~~l~~~~~~~ 146 (152)
T 2lrn_A 118 PEGKIVAKELRGDDLYNTVEKFVNGAKEG 146 (152)
T ss_dssp TTSEEEEECCCTTHHHHHHHHHHTSSSSC
T ss_pred CCCeEEEeeCCHHHHHHHHHHHHhhcccc
Confidence 12244444446789999999887776543
No 116
>2ywm_A Glutaredoxin-like protein; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 2.30A {Aquifex aeolicus} PDB: 2ayt_A
Probab=43.78 E-value=59 Score=22.04 Aligned_cols=67 Identities=12% Similarity=0.244 Sum_probs=44.0
Q ss_pred HHHHhHHhhhcceEEEEEeCCCccchhhhccccCcceEEEEeeCceeEEecCCCCCceEEeecCChhHHHHHHHHHhhcc
Q 034174 4 VLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVYRGA 83 (102)
Q Consensus 4 vL~~~a~~v~~~a~IY~vDi~~Vpdfn~myeL~dP~tvMFFfrnkHm~vD~GTgnnnKin~~~~~kqefIDiie~iyrgA 83 (102)
.|.+++.+.. -..++.+|+++-|+..+-|.+..-+|+++ +++ + .+..+ ..+.+++.+.++.....+
T Consensus 157 ~~~~~~~~~~-~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~--~G~-~---------~~~~G-~~~~~~l~~~l~~~~~~~ 222 (229)
T 2ywm_A 157 MAWDFALAND-YITSKVIDASENQDLAEQFQVVGVPKIVI--NKG-V---------AEFVG-AQPENAFLGYIMAVYEKL 222 (229)
T ss_dssp HHHHHHHHCT-TEEEEEEEGGGCHHHHHHTTCCSSSEEEE--GGG-T---------EEEES-CCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCC-CeEEEEEECCCCHHHHHHcCCcccCEEEE--CCE-E---------EEeeC-CCCHHHHHHHHHHHhhhh
Confidence 4556666553 46778999999999999999975455333 544 2 12333 245678888888776654
Q ss_pred c
Q 034174 84 R 84 (102)
Q Consensus 84 ~ 84 (102)
+
T Consensus 223 ~ 223 (229)
T 2ywm_A 223 K 223 (229)
T ss_dssp H
T ss_pred h
Confidence 3
No 117
>3t58_A Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.40A {Mus musculus} PDB: 3t59_A*
Probab=42.80 E-value=39 Score=27.66 Aligned_cols=69 Identities=12% Similarity=0.079 Sum_probs=45.5
Q ss_pred hHHHHhHHhhhc---ceEEEEEeCC--CccchhhhccccCcceEEEEeeC----ceeEEecCCCCCceEEeecCChhHHH
Q 034174 3 EVLSSVAETIKN---FAVIYLVDIS--EVPDFNTMYELYDPSTVMFFFRN----KHIMIDLGTGNNNKINWALKDKQEFI 73 (102)
Q Consensus 3 evL~~~a~~v~~---~a~IY~vDi~--~Vpdfn~myeL~dP~tvMFFfrn----kHm~vD~GTgnnnKin~~~~~kqefI 73 (102)
-.+.+++++.+. -..++.||++ +-++..+-|.+.--+|++||-++ +-+....|. .+.+++.
T Consensus 50 P~l~~la~~~~~~~~~v~~~~VD~d~d~~~~l~~~~~V~~~PTl~~f~~g~~~G~~~~~~~g~----------~~~~~L~ 119 (519)
T 3t58_A 50 PTWKELANDVKDWRPALNLAVLDCAEETNSAVCREFNIAGFPTVRFFQAFTKNGSGATLPGAG----------ANVQTLR 119 (519)
T ss_dssp HHHHHHHHHHGGGTTTEEEEEEETTSGGGHHHHHHTTCCSBSEEEEECTTCCSCCCEEECCSS----------CCHHHHH
T ss_pred HHHHHHHHHhhCcCCcEEEEEEECCccccHHHHHHcCCcccCEEEEEcCcccCCCceeEecCC----------CCHHHHH
Confidence 357788888876 6788999984 58999999999877776555422 112222221 3567777
Q ss_pred HHHHHHhh
Q 034174 74 DIVETVYR 81 (102)
Q Consensus 74 Diie~iyr 81 (102)
+.|+....
T Consensus 120 ~~l~~~l~ 127 (519)
T 3t58_A 120 MRLIDALE 127 (519)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHh
Confidence 76666544
No 118
>3moe_A Phosphoenolpyruvate carboxykinase, cytosolic [GTP; gluconeogenesis, lyase; HET: GTP SPV 1PE; 1.25A {Rattus norvegicus} PDB: 3mof_A* 3moh_A* 3dtb_A* 2qey_A* 2qf1_A* 2qew_A* 2rk7_A 2rk8_A 2rka_A* 2rkd_A 2rke_A 2qf2_A* 3dt2_A* 3dt7_A* 3dt4_A* 1khb_A* 1khe_A* 1khf_A* 1khg_A 1m51_A* ...
Probab=39.77 E-value=12 Score=32.92 Aligned_cols=27 Identities=22% Similarity=0.507 Sum_probs=24.4
Q ss_pred ChhHHHHHHHHHhhccccCceeEEccC
Q 034174 68 DKQEFIDIVETVYRGARKGRGLVIAPK 94 (102)
Q Consensus 68 ~kqefIDiie~iyrgA~kGkgiv~sP~ 94 (102)
+.+|+-..+...|+|.||||.+-+-|.
T Consensus 120 ~p~e~~~~l~~~f~G~M~GRTMYViPF 146 (624)
T 3moe_A 120 SEEDFEKAFNARFPGCMKGRTMYVIPF 146 (624)
T ss_dssp CHHHHHHHHHTTSTTTTTTSEEEEEEE
T ss_pred CHHHHHHHHHhhCcccccCCeEEEEee
Confidence 578999999999999999999988774
No 119
>3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A
Probab=39.17 E-value=72 Score=24.41 Aligned_cols=68 Identities=21% Similarity=0.263 Sum_probs=41.9
Q ss_pred hHHHHhHHhhhc--ceEEEEEeCCCccchhhhccccCcceEEEEeeCceeEEecCCCCCceEEeecCChhHHHHHHHHH
Q 034174 3 EVLSSVAETIKN--FAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETV 79 (102)
Q Consensus 3 evL~~~a~~v~~--~a~IY~vDi~~Vpdfn~myeL~dP~tvMFFfrnkHm~vD~GTgnnnKin~~~~~kqefIDiie~i 79 (102)
..|.+++++.+. -.+++.+|.++- +..+-|.+.--+|++||-+++.+...--.|. .+.++|++.|+..
T Consensus 390 p~~~~l~~~~~~~~~v~~~~id~~~~-~~~~~~~v~~~Pt~~~~~~~~~~~~~~~~G~--------~~~~~l~~~l~~~ 459 (481)
T 3f8u_A 390 PKYKELGEKLSKDPNIVIAKMDATAN-DVPSPYEVRGFPTIYFSPANKKLNPKKYEGG--------RELSDFISYLQRE 459 (481)
T ss_dssp HHHHHHHHHTTTCSSEEEEEEETTSS-CCCTTCCCCSSSEEEEECTTCTTSCEECCSC--------CSHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCEEEEEEECCch-hhHhhCCCcccCEEEEEeCCCeEeeeEeCCC--------CCHHHHHHHHHHh
Confidence 357778887776 367788998765 5556677866557655543333222222222 4568888888764
No 120
>3u5i_q A0, L10E, 60S acidic ribosomal protein P0; translation, ribosome, ribosomal R ribosomal protein, STM1; 3.00A {Saccharomyces cerevisiae} PDB: 4b6a_q 3izc_s 3izs_s 3j16_G* 3o5h_M 3jyw_8
Probab=38.66 E-value=29 Score=27.30 Aligned_cols=75 Identities=13% Similarity=0.235 Sum_probs=54.6
Q ss_pred hHHHHhHHhhhcceEEEEEeCCCccchhhhccc----cCcceEEEEeeCceeEEecCCC---------------CCceEE
Q 034174 3 EVLSSVAETIKNFAVIYLVDISEVPDFNTMYEL----YDPSTVMFFFRNKHIMIDLGTG---------------NNNKIN 63 (102)
Q Consensus 3 evL~~~a~~v~~~a~IY~vDi~~Vpdfn~myeL----~dP~tvMFFfrnkHm~vD~GTg---------------nnnKin 63 (102)
++..++.+.++++-.++++|.+-++ =++|=+| .+- .++++.+|+-|+.=++.- .++-+-
T Consensus 10 ~~v~el~e~l~~~~~v~vv~~~gl~-v~ql~~LR~~lR~~-~~~~V~KNTL~r~Al~~~~~~~~~le~L~~~L~G~~gl~ 87 (312)
T 3u5i_q 10 EYFAKLREYLEEYKSLFVVGVDNVS-SQQMHEVRKELRGR-AVVLMGKNTMVRRAIRGFLSDLPDFEKLLPFVKGNVGFV 87 (312)
T ss_dssp HHHHHHHHHHHHCSEEEEEECSSCC-HHHHHHHHHHHSSS-CEEEECCHHHHHHHHHTTSSSSCGGGGTGGGCCSSEEEE
T ss_pred HHHHHHHHHHHhCCEEEEEecCCCC-HHHHHHHHHHHhcC-ceEEEeehHHHHHHHhhCcccccChHHHHHhccCCEEEE
Confidence 5678899999999999999998875 3555555 333 478899999999888761 234455
Q ss_pred eecCChhHHHHHHHHH
Q 034174 64 WALKDKQEFIDIVETV 79 (102)
Q Consensus 64 ~~~~~kqefIDiie~i 79 (102)
|.-+|..+..++++.-
T Consensus 88 Ft~~dp~~v~k~l~~~ 103 (312)
T 3u5i_q 88 FTNEPLTEIKNVIVSN 103 (312)
T ss_dssp EESSCHHHHHHHHHTS
T ss_pred EECCCHHHHHHHHHhc
Confidence 5556777777777643
No 121
>1gxg_A Colicin E8 immunity protein; inhibitor, inhibitor protein of DNAse colicin E8, bacteriocin immunity, plasmid,; NMR {Escherichia coli} SCOP: a.28.2.1 PDB: 1gxh_A
Probab=37.90 E-value=17 Score=23.96 Aligned_cols=17 Identities=24% Similarity=0.384 Sum_probs=14.7
Q ss_pred CChhHHHHHHHHHhhcc
Q 034174 67 KDKQEFIDIVETVYRGA 83 (102)
Q Consensus 67 ~~kqefIDiie~iyrgA 83 (102)
-+.+|||++|+.|+.+.
T Consensus 10 yTe~Efi~lv~~I~~~~ 26 (85)
T 1gxg_A 10 YTETEFKKIIEDIINCE 26 (85)
T ss_dssp SCHHHHHHHHHHHHHTS
T ss_pred cCHHHHHHHHHHHHhCC
Confidence 36799999999999884
No 122
>1fr2_A Colicin E9 immunity protein; protein-protein complex, zinc containing enzyme, HNH-motif, immune system; 1.60A {Escherichia coli} SCOP: a.28.2.1 PDB: 1e0h_A 1emv_A 1imp_A 1imq_A 2k5x_A 2vln_A 2vlp_A 2vlq_A 2vlo_A 2gzf_A 2gzg_A 2gzi_A 2gyk_A 2gzj_A 2gze_A 1bxi_A 3gkl_C 3gjn_A
Probab=37.49 E-value=17 Score=24.04 Aligned_cols=17 Identities=24% Similarity=0.489 Sum_probs=14.8
Q ss_pred CChhHHHHHHHHHhhcc
Q 034174 67 KDKQEFIDIVETVYRGA 83 (102)
Q Consensus 67 ~~kqefIDiie~iyrgA 83 (102)
-+.+|||++|+.|+.+.
T Consensus 10 yTe~Efi~lv~~I~~~~ 26 (86)
T 1fr2_A 10 YTEAEFLQLVTTICNAD 26 (86)
T ss_dssp SBHHHHHHHHHHHHTTC
T ss_pred cCHHHHHHHHHHHHhCC
Confidence 36799999999999884
No 123
>1ego_A Glutaredoxin; electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 1egr_A 1grx_A* 1qfn_A
Probab=37.45 E-value=28 Score=19.81 Aligned_cols=58 Identities=17% Similarity=0.232 Sum_probs=34.5
Q ss_pred HHHHhHHhhhcceEEEEEeCCCcc----chhhhcc--ccCcceEEEEeeCceeEEecCCCCCceEEeecCChhHHHHHHH
Q 034174 4 VLSSVAETIKNFAVIYLVDISEVP----DFNTMYE--LYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVE 77 (102)
Q Consensus 4 vL~~~a~~v~~~a~IY~vDi~~Vp----dfn~mye--L~dP~tvMFFfrnkHm~vD~GTgnnnKin~~~~~kqefIDiie 77 (102)
+|.+++++-++ ..+..+|+++-| ++.+.|. ...-+++ |.+++++- | -+++...++
T Consensus 20 ~l~~l~~~~~~-i~~~~vdi~~~~~~~~~l~~~~~~~~~~vP~i--~~~g~~i~---~-------------~~~l~~~~~ 80 (85)
T 1ego_A 20 LAEKLSNERDD-FQYQYVDIRAEGITKEDLQQKAGKPVETVPQI--FVDQQHIG---G-------------YTDFAAWVK 80 (85)
T ss_dssp HHHHHHHHHSS-CEEEEECHHHHTCCSHHHHHHTCCCSCCSCEE--EETTEEEE---S-------------SHHHHHHHH
T ss_pred HHHHHHhcCCC-ceEEEEecccChHHHHHHHHHhCCCCceeCeE--EECCEEEE---C-------------HHHHHHHHH
Confidence 45555554444 456778886644 6777777 4443453 56777651 1 257777777
Q ss_pred HHh
Q 034174 78 TVY 80 (102)
Q Consensus 78 ~iy 80 (102)
.-|
T Consensus 81 ~~~ 83 (85)
T 1ego_A 81 ENL 83 (85)
T ss_dssp HHH
T ss_pred Hhc
Confidence 665
No 124
>2hls_A Protein disulfide oxidoreductase; thioredoxin fold; 1.93A {Aeropyrum pernix}
Probab=35.89 E-value=1.2e+02 Score=21.59 Aligned_cols=71 Identities=15% Similarity=0.204 Sum_probs=44.7
Q ss_pred HHHHhHHhhh----cceEEEEEeCCCccchhhhccccCcceEEEEeeCceeEEecCCCCCceEEeecCChhHHHHHHHHH
Q 034174 4 VLSSVAETIK----NFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETV 79 (102)
Q Consensus 4 vL~~~a~~v~----~~a~IY~vDi~~Vpdfn~myeL~dP~tvMFFfrnkHm~vD~GTgnnnKin~~~~~kqefIDiie~i 79 (102)
.|.+++.+.+ .-..+..+|+++-|+..+-|.+.-=+|+ ++ +++.+ ..+ ..+.++|++.++..
T Consensus 159 ~l~~la~~~~~~~~~~v~~~~vd~~~~~~~~~~~~V~~vPt~-~i-~G~~~-----------~~G-~~~~~~l~~~l~~~ 224 (243)
T 2hls_A 159 LAHMFAYEAWKQGNPVILSEAVEAYENPDIADKYGVMSVPSI-AI-NGYLV-----------FVG-VPYEEDFLDYVKSA 224 (243)
T ss_dssp HHHHHHHHHHHTTCCCEEEEEEETTTCHHHHHHTTCCSSSEE-EE-TTEEE-----------EES-CCCHHHHHHHHHHH
T ss_pred HHHHHHHHcccccCCcEEEEEEECccCHHHHHHcCCeeeCeE-EE-CCEEE-----------EeC-CCCHHHHHHHHHHH
Confidence 4566666652 3356789999999998888888654453 33 44421 222 23568899988887
Q ss_pred hhccccCce
Q 034174 80 YRGARKGRG 88 (102)
Q Consensus 80 yrgA~kGkg 88 (102)
....+.-.|
T Consensus 225 ~~~~~~~~g 233 (243)
T 2hls_A 225 AEGRLTVKG 233 (243)
T ss_dssp HTTCCCCCC
T ss_pred hhcccccCC
Confidence 655444333
No 125
>3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A {Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A
Probab=35.60 E-value=1e+02 Score=22.45 Aligned_cols=72 Identities=11% Similarity=0.156 Sum_probs=46.8
Q ss_pred hHHHHhHHhhhcceEEEEEeCC--CccchhhhccccC--cceEEEEeeCceeEEecCCCCCceEE--eecCChhHHHHHH
Q 034174 3 EVLSSVAETIKNFAVIYLVDIS--EVPDFNTMYELYD--PSTVMFFFRNKHIMIDLGTGNNNKIN--WALKDKQEFIDIV 76 (102)
Q Consensus 3 evL~~~a~~v~~~a~IY~vDi~--~Vpdfn~myeL~d--P~tvMFFfrnkHm~vD~GTgnnnKin--~~~~~kqefIDii 76 (102)
..+.++|++.+.-..+..+|.+ +-+...+.|.+.. =+|+.+|-.++. ..|.. .-..+.+++.+.+
T Consensus 155 ~~~~~~A~~~~~~i~f~~vd~~~~~~~~~~~~fgi~~~~~P~~~~~~~~~~---------~~ky~~~~~~~~~~~l~~fi 225 (361)
T 3uem_A 155 SNFKTAAESFKGKILFIFIDSDHTDNQRILEFFGLKKEECPAVRLITLEEE---------MTKYKPESEELTAERITEFC 225 (361)
T ss_dssp HHHHHHHGGGTTTCEEEEECTTSGGGHHHHHHTTCCTTTCSEEEEEECC-----------CCEECCSSCCCCHHHHHHHH
T ss_pred HHHHHHHHHccCceEEEEecCChHHHHHHHHHcCCCccCCccEEEEEcCCc---------ccccCCCccccCHHHHHHHH
Confidence 3577888888766788889998 6788889999853 345444432221 12222 1135668888888
Q ss_pred HHHhhcc
Q 034174 77 ETVYRGA 83 (102)
Q Consensus 77 e~iyrgA 83 (102)
+....|.
T Consensus 226 ~~~l~g~ 232 (361)
T 3uem_A 226 HRFLEGK 232 (361)
T ss_dssp HHHHTTC
T ss_pred HHHhcCC
Confidence 8887765
No 126
>3jsy_A Acidic ribosomal protein P0 homolog; ribonucleoprotein; 1.60A {Methanocaldococcus jannaschii}
Probab=35.11 E-value=24 Score=25.98 Aligned_cols=75 Identities=21% Similarity=0.269 Sum_probs=55.3
Q ss_pred hHHHHhHHhhhcceEEEEEeCCCccchhhhccc----cCcceEEEEeeCceeEEecCCC-----------------CCce
Q 034174 3 EVLSSVAETIKNFAVIYLVDISEVPDFNTMYEL----YDPSTVMFFFRNKHIMIDLGTG-----------------NNNK 61 (102)
Q Consensus 3 evL~~~a~~v~~~a~IY~vDi~~Vpdfn~myeL----~dP~tvMFFfrnkHm~vD~GTg-----------------nnnK 61 (102)
++..++.+.++++-.++++|.+-++. ++|=+| .+- +.+++.+|+-|+.=++.- .++-
T Consensus 7 ~~v~el~e~l~~~~~v~v~~~~gl~~-~ql~~lR~~lr~~-~~~~v~KNtL~r~Al~~~~~~e~~~~~~~L~~~l~G~~~ 84 (213)
T 3jsy_A 7 EEVKTLKGLIKSKPVVAIVDMMDVPA-PQLQEIRDKIRDK-VKLRMSRNTLIIRALKEAAEELNNPKLAELANYVERGAA 84 (213)
T ss_dssp HHHHHHHHHHHHSSEEEEEECCSCCH-HHHHHHHHHHTTT-EEEEECCHHHHHHHHHHHHHHTTCGGGGGGGGGCCSSEE
T ss_pred HHHHHHHHHHHhCCEEEEEEcCCCCH-HHHHHHHHHHhCC-CEEEEEeHHHHHHHHhhchhhhcccchhHHHHhCcCCeE
Confidence 56788999999999999999887653 444444 333 578999999998776632 2455
Q ss_pred EEeecCChhHHHHHHHHH
Q 034174 62 INWALKDKQEFIDIVETV 79 (102)
Q Consensus 62 in~~~~~kqefIDiie~i 79 (102)
+-|.-+|..+..++++.-
T Consensus 85 l~Ft~~dp~~v~k~l~~~ 102 (213)
T 3jsy_A 85 ILVTDMNPFKLYKLLEEN 102 (213)
T ss_dssp EEEESSCHHHHHHHHHHS
T ss_pred EEEeCCCHHHHHHHHHHc
Confidence 666667888888888764
No 127
>1unk_A Colicin E7; immunity protein, dimeric structure, RNAse active site; 1.80A {Escherichia coli} SCOP: a.28.2.1 PDB: 1mz8_A 1ayi_A 2jaz_A 2jb0_A 2jbg_A 7cei_A 1znv_A 1cei_A 1ujz_A 2erh_A
Probab=34.42 E-value=20 Score=23.99 Aligned_cols=17 Identities=12% Similarity=0.417 Sum_probs=15.0
Q ss_pred CChhHHHHHHHHHhhcc
Q 034174 67 KDKQEFIDIVETVYRGA 83 (102)
Q Consensus 67 ~~kqefIDiie~iyrgA 83 (102)
-+.+|||++|+.||.+.
T Consensus 10 YTE~EFl~fv~~i~~~~ 26 (87)
T 1unk_A 10 YTEAEFVQLLKEIEKEN 26 (87)
T ss_dssp SCHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhCC
Confidence 47899999999999885
No 128
>2dlx_A UBX domain-containing protein 7; UAS domain, protein KIAA0794, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: c.47.1.24
Probab=33.75 E-value=1.1e+02 Score=20.81 Aligned_cols=66 Identities=21% Similarity=0.304 Sum_probs=39.8
Q ss_pred HhHHhhh-cceEEEEEeCCC--ccchhhhccccCcceEEEEeeCceeEEecCCCCC-ceEEeecCChhHHHHHHHHHhhc
Q 034174 7 SVAETIK-NFAVIYLVDISE--VPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNN-NKINWALKDKQEFIDIVETVYRG 82 (102)
Q Consensus 7 ~~a~~v~-~~a~IY~vDi~~--Vpdfn~myeL~dP~tvMFFfrnkHm~vD~GTgnn-nKin~~~~~kqefIDiie~iyrg 82 (102)
.+++.++ +| +..-+|+++ -..+.+.|.+.-++|+.|+ ..+ ||.. ..+.+ -+.++|++.++.+-..
T Consensus 69 ~V~~~l~~~f-v~v~~d~~~~~~~~l~~~y~v~~~P~~~fl-d~~-------~G~~l~~~~g--~~~~~fl~~L~~~l~~ 137 (153)
T 2dlx_A 69 AVKNIIREHF-IFWQVYHDSEEGQRYIQFYKLGDFPYVSIL-DPR-------TGQKLVEWHQ--LDVSSFLDQVTGFLGE 137 (153)
T ss_dssp HHHHHHHHTE-EEEEEESSSHHHHHHHHHHTCCSSSEEEEE-CTT-------TCCCCEEESS--CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCe-EEEEEecCCHhHHHHHHHcCCCCCCEEEEE-eCC-------CCcEeeecCC--CCHHHHHHHHHHHHHh
Confidence 3455553 55 445678865 2346677888778885444 322 2322 22434 5899999999887654
Q ss_pred c
Q 034174 83 A 83 (102)
Q Consensus 83 A 83 (102)
-
T Consensus 138 ~ 138 (153)
T 2dlx_A 138 H 138 (153)
T ss_dssp T
T ss_pred c
Confidence 3
No 129
>2wvq_A Small S protein; prion-binding protein, prion, prion regulatory domain, heter incompatibility, prion- binding protein; 2.00A {Podospora anserina} PDB: 2wvn_A 2wvo_A
Probab=32.87 E-value=28 Score=25.80 Aligned_cols=24 Identities=38% Similarity=0.554 Sum_probs=20.0
Q ss_pred CCCCceEEeecCChhHHHHHHHHH
Q 034174 56 TGNNNKINWALKDKQEFIDIVETV 79 (102)
Q Consensus 56 TgnnnKin~~~~~kqefIDiie~i 79 (102)
++--.|+.|++.+|..|-.+|+.+
T Consensus 144 ~s~~~r~~Wai~Dk~~F~~LV~~i 167 (225)
T 2wvq_A 144 TSLAKKTAWALYDGKSLEKIVDQV 167 (225)
T ss_dssp CCSCCCCCEEECSHHHHHHHHHHH
T ss_pred CCccceeeeeeechHHHHHHHHHH
Confidence 344479999999999999998875
No 130
>2ju5_A Thioredoxin disulfide isomerase; protein, oxidoreductase; NMR {Chlamydophila pneumoniae}
Probab=29.71 E-value=1.1e+02 Score=19.64 Aligned_cols=65 Identities=9% Similarity=0.144 Sum_probs=35.7
Q ss_pred HHhHHhhhcceEEEEEeCCCcc-----------chhhhccccCcceEEEEe-eCceeEEecCCCCCceEEee-cCChhHH
Q 034174 6 SSVAETIKNFAVIYLVDISEVP-----------DFNTMYELYDPSTVMFFF-RNKHIMIDLGTGNNNKINWA-LKDKQEF 72 (102)
Q Consensus 6 ~~~a~~v~~~a~IY~vDi~~Vp-----------dfn~myeL~dP~tvMFFf-rnkHm~vD~GTgnnnKin~~-~~~kqef 72 (102)
.++++....=.+++.+|.++-+ ++.+.|.+.--+|+ +|+ ++-.+.- ++ +. -.+.++|
T Consensus 74 ~~~~~~~~~~~~~v~vd~~~~~~~~~~~~~~~~~l~~~~~v~~~Pt~-~~~d~~G~~~~--------~~-G~~~~~~~~l 143 (154)
T 2ju5_A 74 SEFKHFAGVHLHMVEVDFPQKNHQPEEQRQKNQELKAQYKVTGFPEL-VFIDAEGKQLA--------RM-GFEPGGGAAY 143 (154)
T ss_dssp HHHHHHHHHHCEEEEEECCSSCCCCHHHHHHHHHHHHHTTCCSSSEE-EEECTTCCEEE--------EE-CCCTTCHHHH
T ss_pred HHHHHHhcCcEEEEEecCccccCCChhhHhhHHHHHHHcCCCCCCEE-EEEcCCCCEEE--------Ee-cCCCCCHHHH
Confidence 3444444222456788988765 66777888654554 444 2222211 12 22 2267888
Q ss_pred HHHHHHHh
Q 034174 73 IDIVETVY 80 (102)
Q Consensus 73 IDiie~iy 80 (102)
++.++.+-
T Consensus 144 ~~~l~~~l 151 (154)
T 2ju5_A 144 VSKVKSAL 151 (154)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88887653
No 131
>3u43_A Colicin-E2 immunity protein; protein-protein complex, DNAse, high affinity, protein bindi; 1.72A {Escherichia coli} PDB: 2no8_A 2wpt_A
Probab=29.29 E-value=27 Score=23.50 Aligned_cols=17 Identities=24% Similarity=0.559 Sum_probs=14.5
Q ss_pred CChhHHHHHHHHHhhcc
Q 034174 67 KDKQEFIDIVETVYRGA 83 (102)
Q Consensus 67 ~~kqefIDiie~iyrgA 83 (102)
-+.+|||++|+.|+.+-
T Consensus 10 yTe~Efi~lv~~I~~~~ 26 (94)
T 3u43_A 10 YTEAEFLEFVKKICRAE 26 (94)
T ss_dssp SBHHHHHHHHHHHHHTC
T ss_pred cCHHHHHHHHHHHHhcC
Confidence 36799999999999864
No 132
>2k0d_X IMME7, colicin-E7 immunity protein; toxin inhibitor; NMR {Escherichia coli}
Probab=27.85 E-value=28 Score=23.98 Aligned_cols=18 Identities=11% Similarity=0.320 Sum_probs=15.4
Q ss_pred cCChhHHHHHHHHHhhcc
Q 034174 66 LKDKQEFIDIVETVYRGA 83 (102)
Q Consensus 66 ~~~kqefIDiie~iyrgA 83 (102)
=-+++|||++|+.|+...
T Consensus 16 DYTE~EFi~lv~~I~~~~ 33 (101)
T 2k0d_X 16 DYTEAEFVQLLKEIEKEN 33 (101)
T ss_dssp GCBHHHHHHHHHHHHHHH
T ss_pred HhcHHHHHHHHHHHHhcC
Confidence 457899999999999874
No 133
>2trc_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; 2.40A {Rattus norvegicus} SCOP: c.47.1.6
Probab=25.67 E-value=59 Score=23.13 Aligned_cols=46 Identities=9% Similarity=0.109 Sum_probs=30.8
Q ss_pred hhHHHHhHHhhhcceEEEEEeCCCccchhhhccccCcceEEEEeeCcee
Q 034174 2 DEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHI 50 (102)
Q Consensus 2 DevL~~~a~~v~~~a~IY~vDi~~Vpdfn~myeL~dP~tvMFFfrnkHm 50 (102)
...|.++|++..+ ..++-+|++ -|+..+-|.+.--+|++|| ++-.+
T Consensus 139 ~p~l~~la~~~~~-v~f~~vd~~-~~~l~~~~~i~~~PTl~~~-~~G~~ 184 (217)
T 2trc_P 139 NSSLECLAAEYPM-VKFCKIRAS-NTGAGDRFSSDVLPTLLVY-KGGEL 184 (217)
T ss_dssp HHHHHHHHTTCTT-SEEEEEEHH-HHTCSTTSCGGGCSEEEEE-ETTEE
T ss_pred HHHHHHHHHHCCC-eEEEEEECC-cHHHHHHCCCCCCCEEEEE-ECCEE
Confidence 4566777776643 467788888 7777788888765676555 55444
No 134
>1ilo_A Conserved hypothetical protein MTH895; beta-alpha-beta-alpha-beta-BETA-alpha motif, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus str} SCOP: c.47.1.1
Probab=24.21 E-value=96 Score=16.92 Aligned_cols=43 Identities=7% Similarity=-0.153 Sum_probs=25.6
Q ss_pred hHHHHhHHhhhcceEEEEEeCCCccchhhhccccCcceEEEEeeCcee
Q 034174 3 EVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHI 50 (102)
Q Consensus 3 evL~~~a~~v~~~a~IY~vDi~~Vpdfn~myeL~dP~tvMFFfrnkHm 50 (102)
..|.+++++.+.=..++.+| -++..+-|.+.--+|+++ +++.+
T Consensus 19 ~~l~~~~~~~~~~~~~~~v~---~~~~~~~~~v~~~Pt~~~--~G~~~ 61 (77)
T 1ilo_A 19 KNAREAVKELGIDAEFEKIK---EMDQILEAGLTALPGLAV--DGELK 61 (77)
T ss_dssp HHHHHHHHHTTCCEEEEEEC---SHHHHHHHTCSSSSCEEE--TTEEE
T ss_pred HHHHHHHHHcCCceEEEEec---CHHHHHHCCCCcCCEEEE--CCEEE
Confidence 45667777766434455555 466777788865556444 55543
No 135
>2guk_A Hypothetical protein PG1857; alpha-beta, alpha-helical bundle, structural genomics, PSI, structure initiative; 1.91A {Porphyromonas gingivalis} SCOP: d.360.1.1
Probab=23.53 E-value=60 Score=22.96 Aligned_cols=21 Identities=14% Similarity=0.268 Sum_probs=18.6
Q ss_pred CCceEEeecCChhHHHHHHHHH
Q 034174 58 NNNKINWALKDKQEFIDIVETV 79 (102)
Q Consensus 58 nnnKin~~~~~kqefIDiie~i 79 (102)
++.|+|-.|.+ .|+|++|..+
T Consensus 61 ~~~kiNlFFG~-~~Ci~vir~~ 81 (120)
T 2guk_A 61 NTERTNLFFGC-KECMEAIRLF 81 (120)
T ss_dssp TSSEEEEEEEC-HHHHHHHHHH
T ss_pred CCCeEEEEeCC-HHHHHHHHHH
Confidence 68899999986 8999999988
No 136
>1v5r_A Growth-arrest-specific protein 2; GAS2 domain, zinc binding domain, apoptosis, cell cycle, structural genomics; NMR {Mus musculus} SCOP: d.82.4.1
Probab=23.41 E-value=50 Score=22.56 Aligned_cols=26 Identities=27% Similarity=0.565 Sum_probs=17.1
Q ss_pred hccccCcceEEEEeeCceeEEecCCC
Q 034174 32 MYELYDPSTVMFFFRNKHIMIDLGTG 57 (102)
Q Consensus 32 myeL~dP~tvMFFfrnkHm~vD~GTg 57 (102)
-|.+-|-.-.+=..|++|+||..|.|
T Consensus 38 kYr~G~k~i~vRil~~~~vMVRVGGG 63 (97)
T 1v5r_A 38 RYRVGEKILFIRMLHNKHVMVRVGGG 63 (97)
T ss_dssp EEEETTEEEEEEEETTTEEEEEETTE
T ss_pred cEEeCCeEEEEEEecCCEEEEEeCCc
Confidence 36665532222234779999999998
No 137
>1z6n_A Hypothetical protein PA1234; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.47.1.1 PDB: 3lef_A
Probab=22.12 E-value=72 Score=21.86 Aligned_cols=42 Identities=10% Similarity=-0.017 Sum_probs=27.4
Q ss_pred HHHHhHHhhhcceEEEEEeCCCccchhhhcc---ccCcceEEEEeeC
Q 034174 4 VLSSVAETIKNFAVIYLVDISEVPDFNTMYE---LYDPSTVMFFFRN 47 (102)
Q Consensus 4 vL~~~a~~v~~~a~IY~vDi~~Vpdfn~mye---L~dP~tvMFFfrn 47 (102)
+|.+++++-++ ..+..||+++-|+..+-|. +.--+|+ +||++
T Consensus 75 ~l~~l~~~~~~-v~~~~v~~d~~~~~~~~~~~~~v~~iPt~-i~~~~ 119 (167)
T 1z6n_A 75 ALDFAQRLQPN-IELAIISKGRAEDDLRQRLALERIAIPLV-LVLDE 119 (167)
T ss_dssp HHHHHHHHCTT-EEEEEECHHHHHHHTTTTTTCSSCCSSEE-EEECT
T ss_pred HHHHHHHHCCC-cEEEEEECCCCHHHHHHHHHcCCCCcCeE-EEECC
Confidence 56677776555 5678899998888777665 5433453 44444
No 138
>2gpr_A Glucose-permease IIA component; phosphotransferase, enzyme IIA; 2.50A {Mycoplasma capricolum} SCOP: b.84.3.1
Probab=22.10 E-value=42 Score=23.80 Aligned_cols=18 Identities=33% Similarity=0.665 Sum_probs=14.8
Q ss_pred HHhhccccCceeEEccCC
Q 034174 78 TVYRGARKGRGLVIAPKD 95 (102)
Q Consensus 78 ~iyrgA~kGkgiv~sP~d 95 (102)
.+|.+.+-|.|+.++|.+
T Consensus 27 ~vf~~~~~G~Giai~p~~ 44 (154)
T 2gpr_A 27 EVFKERMLGDGFAINPKS 44 (154)
T ss_dssp HHHHTTSSCEEEEEEESS
T ss_pred ccccccceeCeEEEEeCC
Confidence 367888889999988876
No 139
>3kp8_A Vkorc1/thioredoxin domain protein; blood coagulation, disulfide formation, redox partner, oxidoreductase; 1.66A {Synechococcus SP}
Probab=21.83 E-value=50 Score=20.64 Aligned_cols=18 Identities=11% Similarity=-0.143 Sum_probs=14.3
Q ss_pred CccchhhhccccCcceEE
Q 034174 25 EVPDFNTMYELYDPSTVM 42 (102)
Q Consensus 25 ~Vpdfn~myeL~dP~tvM 42 (102)
+-++..+-|.+.-.+|++
T Consensus 54 ~~~~l~~~~~V~~~PT~~ 71 (106)
T 3kp8_A 54 PQAQECTEAGITSYPTWI 71 (106)
T ss_dssp CCCHHHHHTTCCSSSEEE
T ss_pred hhHHHHHHcCCeEeCEEE
Confidence 678899999998777843
No 140
>2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A
Probab=21.66 E-value=1.2e+02 Score=23.45 Aligned_cols=66 Identities=14% Similarity=0.108 Sum_probs=38.2
Q ss_pred HHHHhHHhhh---cceEEEEEeCCCccchhhhccccCcceEEEEeeCceeEEecCCCCCceEEeecCChhHHHHHHHHH
Q 034174 4 VLSSVAETIK---NFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETV 79 (102)
Q Consensus 4 vL~~~a~~v~---~~a~IY~vDi~~Vpdfn~myeL~dP~tvMFFfrnkHm~vD~GTgnnnKin~~~~~kqefIDiie~i 79 (102)
.+.+++++.+ .-..+.-+|.++-+.- + |.+.--+|++||-+++-....-.+| ..+.+++++.|+..
T Consensus 397 ~~~~l~~~~~~~~~~v~~~~vd~~~~~~~-~-~~v~~~Pt~~~~~~G~~~~~~~~~G--------~~~~~~l~~~i~~~ 465 (504)
T 2b5e_A 397 TYQELADTYANATSDVLIAKLDHTENDVR-G-VVIEGYPTIVLYPGGKKSESVVYQG--------SRSLDSLFDFIKEN 465 (504)
T ss_dssp HHHHHHHHHHHHCSSCEEEEEEGGGCCCS-S-CCCSSSSEEEEECCTTSCCCCBCCS--------CCCHHHHHHHHHHH
T ss_pred HHHHHHHHhhccCCcEEEEEecCCccccc-c-CCceecCeEEEEeCCceecceEecC--------CCCHHHHHHHHHhc
Confidence 4667777665 1356678887654433 3 7787666876664333221222223 23667888877764
No 141
>3i7t_A RV2704, putative uncharacterized protein; siras, YJGF/YER057C/UK114, homotrimer, quick SOAK NAI deriva unknown function; 1.93A {Mycobacterium tuberculosis}
Probab=20.58 E-value=20 Score=25.11 Aligned_cols=20 Identities=25% Similarity=0.350 Sum_probs=16.6
Q ss_pred eEEEEEeCCCccchhhhccc
Q 034174 16 AVIYLVDISEVPDFNTMYEL 35 (102)
Q Consensus 16 a~IY~vDi~~Vpdfn~myeL 35 (102)
..+|+.|++..+.+|+.|.=
T Consensus 69 ~tvyl~d~~df~~~n~v~~~ 88 (149)
T 3i7t_A 69 TRIYVTDISRWREVGEVHAQ 88 (149)
T ss_dssp EEEEESCGGGHHHHHHHHHH
T ss_pred EEEEECCHHHHHHHHHHHHH
Confidence 67899999988888887763
Done!