Query 034178
Match_columns 102
No_of_seqs 181 out of 1043
Neff 7.6
Searched_HMMs 46136
Date Fri Mar 29 10:38:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034178.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/034178hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0484 DnaJ DnaJ-class molecu 100.0 2.2E-28 4.7E-33 184.2 8.1 70 32-101 2-71 (371)
2 KOG0713 Molecular chaperone (D 99.9 8E-27 1.7E-31 172.8 8.1 78 24-101 6-83 (336)
3 PRK14288 chaperone protein Dna 99.9 8E-25 1.7E-29 165.6 8.2 69 33-101 2-70 (369)
4 PRK14296 chaperone protein Dna 99.9 3.3E-24 7.2E-29 162.5 8.1 68 33-101 3-70 (372)
5 PRK14286 chaperone protein Dna 99.9 1.1E-23 2.3E-28 159.6 8.5 69 33-101 3-71 (372)
6 PRK14279 chaperone protein Dna 99.9 1.1E-23 2.3E-28 160.6 7.7 69 33-101 8-76 (392)
7 KOG0712 Molecular chaperone (D 99.9 1.4E-23 3.1E-28 156.4 7.2 67 32-101 2-68 (337)
8 PRK14287 chaperone protein Dna 99.9 6.4E-23 1.4E-27 155.4 8.2 68 33-101 3-70 (371)
9 PRK14294 chaperone protein Dna 99.9 7.5E-23 1.6E-27 154.7 8.6 69 33-101 3-71 (366)
10 PRK14283 chaperone protein Dna 99.9 6.3E-23 1.4E-27 155.7 8.0 69 32-101 3-71 (378)
11 PRK14277 chaperone protein Dna 99.9 7.7E-23 1.7E-27 155.6 8.4 69 33-101 4-72 (386)
12 PRK14282 chaperone protein Dna 99.9 7.7E-23 1.7E-27 154.8 8.3 69 33-101 3-72 (369)
13 PRK14285 chaperone protein Dna 99.9 7.6E-23 1.7E-27 154.7 7.9 68 34-101 3-70 (365)
14 PRK14276 chaperone protein Dna 99.9 9.1E-23 2E-27 154.9 8.1 68 33-101 3-70 (380)
15 PRK14297 chaperone protein Dna 99.9 9.5E-23 2.1E-27 154.8 7.7 69 33-101 3-71 (380)
16 PRK14298 chaperone protein Dna 99.9 9.3E-23 2E-27 154.8 7.7 69 32-101 3-71 (377)
17 PRK14301 chaperone protein Dna 99.9 1.1E-22 2.3E-27 154.3 7.9 69 33-101 3-71 (373)
18 PRK14299 chaperone protein Dna 99.9 1.6E-22 3.5E-27 148.9 8.3 68 33-101 3-70 (291)
19 KOG0716 Molecular chaperone (D 99.9 8.8E-23 1.9E-27 147.6 6.4 69 33-101 30-98 (279)
20 PRK14280 chaperone protein Dna 99.9 2E-22 4.4E-27 152.9 8.2 68 33-101 3-70 (376)
21 PTZ00037 DnaJ_C chaperone prot 99.9 1.5E-22 3.3E-27 155.5 7.2 65 33-101 27-91 (421)
22 PRK14291 chaperone protein Dna 99.9 2.9E-22 6.3E-27 152.3 8.1 68 33-101 2-69 (382)
23 PRK14284 chaperone protein Dna 99.9 3.1E-22 6.8E-27 152.5 8.2 68 34-101 1-68 (391)
24 PRK14278 chaperone protein Dna 99.9 2.3E-22 5E-27 152.7 7.3 67 34-101 3-69 (378)
25 PRK10767 chaperone protein Dna 99.9 3.7E-22 8E-27 151.1 8.3 69 33-101 3-71 (371)
26 PRK14295 chaperone protein Dna 99.9 3.3E-22 7.2E-27 152.3 8.0 69 33-101 8-80 (389)
27 PRK14281 chaperone protein Dna 99.9 3.5E-22 7.7E-27 152.5 7.8 68 34-101 3-70 (397)
28 PF00226 DnaJ: DnaJ domain; I 99.9 1.1E-21 2.5E-26 114.6 7.3 63 35-97 1-64 (64)
29 PRK14289 chaperone protein Dna 99.9 9.7E-22 2.1E-26 149.5 8.4 69 33-101 4-72 (386)
30 PRK14290 chaperone protein Dna 99.9 1.6E-21 3.4E-26 147.5 7.6 68 34-101 3-71 (365)
31 TIGR02349 DnaJ_bact chaperone 99.8 3.1E-21 6.6E-26 145.2 7.6 66 35-101 1-66 (354)
32 PRK14300 chaperone protein Dna 99.8 3.6E-21 7.8E-26 145.9 7.7 67 34-101 3-69 (372)
33 PRK10266 curved DNA-binding pr 99.8 5.1E-21 1.1E-25 141.8 8.1 68 33-101 3-70 (306)
34 PRK14293 chaperone protein Dna 99.8 4.8E-21 1E-25 145.3 8.1 67 34-101 3-69 (374)
35 PRK14292 chaperone protein Dna 99.8 5.2E-21 1.1E-25 144.8 7.6 67 34-101 2-68 (371)
36 KOG0715 Molecular chaperone (D 99.8 5E-21 1.1E-25 141.1 7.0 66 35-101 44-109 (288)
37 KOG0691 Molecular chaperone (D 99.8 7.3E-21 1.6E-25 140.3 7.7 69 33-101 4-72 (296)
38 KOG0718 Molecular chaperone (D 99.8 1.7E-20 3.7E-25 143.9 7.0 70 32-101 7-79 (546)
39 PTZ00341 Ring-infected erythro 99.8 2.7E-20 5.8E-25 152.4 8.3 70 31-101 570-639 (1136)
40 smart00271 DnaJ DnaJ molecular 99.8 4.5E-20 9.8E-25 106.3 6.7 58 34-91 1-59 (60)
41 cd06257 DnaJ DnaJ domain or J- 99.8 9.6E-20 2.1E-24 103.1 6.9 55 35-89 1-55 (55)
42 KOG0721 Molecular chaperone (D 99.8 8.9E-20 1.9E-24 128.6 7.3 71 31-101 96-166 (230)
43 KOG0717 Molecular chaperone (D 99.8 7.1E-20 1.5E-24 140.3 7.0 68 32-99 6-74 (508)
44 KOG0719 Molecular chaperone (D 99.8 4.8E-19 1.1E-23 126.2 7.1 71 31-101 11-83 (264)
45 PHA03102 Small T antigen; Revi 99.8 3.6E-19 7.8E-24 120.6 6.1 65 34-102 5-71 (153)
46 COG2214 CbpA DnaJ-class molecu 99.8 2E-18 4.3E-23 118.8 7.6 68 32-99 4-72 (237)
47 TIGR03835 termin_org_DnaJ term 99.7 3.5E-18 7.6E-23 137.6 8.0 67 34-101 2-68 (871)
48 PRK05014 hscB co-chaperone Hsc 99.7 3.6E-17 7.8E-22 112.7 7.7 64 34-97 1-71 (171)
49 PRK01356 hscB co-chaperone Hsc 99.7 4.7E-17 1E-21 111.7 7.8 64 34-97 2-70 (166)
50 PRK00294 hscB co-chaperone Hsc 99.7 8.9E-17 1.9E-21 111.0 8.3 66 32-97 2-74 (173)
51 PRK03578 hscB co-chaperone Hsc 99.7 2E-16 4.4E-21 109.5 8.0 65 33-97 5-76 (176)
52 PTZ00100 DnaJ chaperone protei 99.6 8E-16 1.7E-20 99.9 5.4 57 28-88 59-115 (116)
53 KOG0720 Molecular chaperone (D 99.6 1.2E-15 2.7E-20 117.1 6.6 68 30-98 231-298 (490)
54 PRK09430 djlA Dna-J like membr 99.6 2.2E-15 4.8E-20 110.1 6.2 60 31-90 197-263 (267)
55 KOG0714 Molecular chaperone (D 99.6 3.8E-15 8.2E-20 106.8 4.9 69 33-101 2-71 (306)
56 KOG0722 Molecular chaperone (D 99.6 3.3E-15 7.1E-20 108.2 4.0 66 31-97 30-95 (329)
57 PHA02624 large T antigen; Prov 99.5 7.7E-15 1.7E-19 116.7 5.3 60 33-96 10-71 (647)
58 PRK01773 hscB co-chaperone Hsc 99.5 6.2E-14 1.3E-18 96.9 7.8 64 34-97 2-72 (173)
59 KOG0624 dsRNA-activated protei 99.5 2.9E-14 6.3E-19 107.6 5.8 71 29-99 389-462 (504)
60 COG5407 SEC63 Preprotein trans 99.4 1.2E-13 2.7E-18 106.4 5.7 70 31-100 95-169 (610)
61 KOG0550 Molecular chaperone (D 99.4 1.2E-13 2.7E-18 105.5 4.9 70 29-98 368-438 (486)
62 TIGR00714 hscB Fe-S protein as 99.3 3.4E-12 7.4E-17 86.9 7.0 52 46-97 3-59 (157)
63 KOG1150 Predicted molecular ch 99.3 3E-12 6.4E-17 90.1 6.1 62 33-94 52-114 (250)
64 COG5269 ZUO1 Ribosome-associat 99.0 7.6E-10 1.6E-14 81.3 4.6 67 32-98 41-112 (379)
65 KOG1789 Endocytosis protein RM 98.8 4.2E-09 9.2E-14 88.3 5.6 57 30-89 1277-1337(2235)
66 KOG0568 Molecular chaperone (D 98.8 1.7E-08 3.7E-13 72.9 5.6 58 32-90 45-103 (342)
67 KOG0723 Molecular chaperone (D 98.7 1.5E-08 3.3E-13 64.7 4.5 60 27-90 49-108 (112)
68 KOG3192 Mitochondrial J-type c 98.5 2E-07 4.4E-12 63.3 5.3 68 30-97 4-78 (168)
69 COG1076 DjlA DnaJ-domain-conta 97.8 1.4E-05 3E-10 55.2 2.6 54 34-87 113-173 (174)
70 COG1076 DjlA DnaJ-domain-conta 97.6 5.9E-05 1.3E-09 52.0 3.5 63 35-97 2-71 (174)
71 KOG0431 Auxilin-like protein a 97.5 0.00019 4E-09 56.4 5.1 49 40-88 394-449 (453)
72 PF03656 Pam16: Pam16; InterP 97.2 0.0018 3.9E-08 42.8 6.0 59 31-93 55-113 (127)
73 PF13446 RPT: A repeated domai 94.5 0.084 1.8E-06 30.2 3.8 47 33-90 4-50 (62)
74 PF11833 DUF3353: Protein of u 91.8 0.75 1.6E-05 32.4 6.0 41 43-91 1-41 (194)
75 PF14687 DUF4460: Domain of un 90.8 0.93 2E-05 29.2 5.2 46 45-90 5-54 (112)
76 KOG3442 Uncharacterized conser 88.1 1.8 3.9E-05 28.6 5.1 59 34-96 59-117 (132)
77 KOG0724 Zuotin and related mol 87.2 0.89 1.9E-05 34.0 3.7 50 46-95 4-57 (335)
78 COG5552 Uncharacterized conser 81.9 8 0.00017 23.4 5.4 36 34-69 3-38 (88)
79 PF07709 SRR: Seven Residue Re 75.2 1.8 3.8E-05 17.6 0.9 13 76-88 2-14 (14)
80 COG2879 Uncharacterized small 57.7 27 0.00058 20.4 3.7 29 53-83 26-54 (65)
81 PF08447 PAS_3: PAS fold; Int 55.0 3.5 7.6E-05 23.9 -0.3 31 33-67 5-36 (91)
82 PF10041 DUF2277: Uncharacteri 51.4 53 0.0012 19.9 6.4 36 34-69 3-38 (78)
83 PF07739 TipAS: TipAS antibiot 49.3 47 0.001 20.4 4.3 51 41-100 51-103 (118)
84 PF12434 Malate_DH: Malate deh 48.5 26 0.00056 17.0 2.3 18 47-64 9-26 (28)
85 cd00084 HMG-box High Mobility 43.7 53 0.0012 17.7 5.1 42 52-98 12-53 (66)
86 PF11126 Phage_DsbA: Transcrip 43.1 29 0.00063 20.5 2.4 32 53-87 35-66 (69)
87 cd01780 PLC_epsilon_RA Ubiquit 40.6 32 0.0007 21.5 2.4 36 32-67 9-44 (93)
88 PF14706 Tnp_DNA_bind: Transpo 40.1 46 0.001 18.9 2.9 41 49-91 15-57 (58)
89 PF12725 DUF3810: Protein of u 39.7 1.1E+02 0.0024 23.0 5.7 59 32-90 80-149 (318)
90 smart00427 H2B Histone H2B. 39.1 90 0.002 19.4 4.3 15 56-70 8-22 (89)
91 KOG2320 RAS effector RIN1 (con 39.0 55 0.0012 27.2 4.1 37 42-87 397-433 (651)
92 PF15178 TOM_sub5: Mitochondri 38.6 42 0.00092 18.4 2.4 24 37-60 2-25 (51)
93 PF03820 Mtc: Tricarboxylate c 35.7 43 0.00092 25.3 2.9 50 44-93 46-121 (308)
94 cd01388 SOX-TCF_HMG-box SOX-TC 34.9 89 0.0019 17.7 5.0 40 53-97 14-53 (72)
95 cd01390 HMGB-UBF_HMG-box HMGB- 34.5 81 0.0017 17.1 5.0 40 54-98 14-53 (66)
96 COG0089 RplW Ribosomal protein 32.9 40 0.00086 21.1 2.0 21 39-59 25-45 (94)
97 PRK14102 nifW nitrogenase stab 31.4 57 0.0012 20.9 2.6 63 25-87 6-75 (105)
98 CHL00030 rpl23 ribosomal prote 30.6 47 0.001 20.6 2.0 20 39-58 23-42 (93)
99 PLN00158 histone H2B; Provisio 30.5 1.4E+02 0.0031 19.4 4.3 16 55-70 33-48 (116)
100 PTZ00463 histone H2B; Provisio 29.3 1.6E+02 0.0034 19.3 4.3 15 56-70 35-49 (117)
101 KOG3960 Myogenic helix-loop-he 28.9 45 0.00098 24.8 2.0 15 74-88 127-141 (284)
102 PF00076 RRM_1: RNA recognitio 28.7 48 0.001 17.7 1.7 23 39-61 3-25 (70)
103 PF00505 HMG_box: HMG (high mo 28.2 1.1E+02 0.0024 16.7 4.6 41 52-97 12-52 (69)
104 PF11207 DUF2989: Protein of u 27.1 1.7E+02 0.0038 20.8 4.6 57 39-99 2-58 (203)
105 TIGR03636 L23_arch archaeal ri 26.6 62 0.0014 19.4 2.0 20 39-58 18-37 (77)
106 PF05823 Gp-FAR-1: Nematode fa 26.1 1.2E+02 0.0026 20.4 3.6 51 49-99 83-133 (154)
107 PF14606 Lipase_GDSL_3: GDSL-l 25.9 1.1E+02 0.0024 21.2 3.4 62 27-88 52-132 (178)
108 PF04967 HTH_10: HTH DNA bindi 25.1 36 0.00077 18.9 0.7 22 38-59 31-52 (53)
109 cd01389 MATA_HMG-box MATA_HMG- 24.8 1.5E+02 0.0032 17.0 5.0 39 52-95 13-51 (77)
110 PF12057 DUF3538: Domain of un 24.3 1.5E+02 0.0032 19.4 3.6 17 73-89 51-67 (120)
111 PRK05738 rplW 50S ribosomal pr 24.2 71 0.0015 19.6 2.0 20 39-58 24-43 (92)
112 PF02216 B: B domain; InterPr 24.1 1.5E+02 0.0031 16.7 3.0 31 35-68 12-42 (54)
113 TIGR00824 EIIA-man PTS system, 24.0 1.9E+02 0.0041 18.1 4.1 37 30-66 23-59 (116)
114 KOG3767 Sideroflexin [General 23.0 92 0.002 23.9 2.7 29 41-69 61-89 (328)
115 PF11590 DNAPolymera_Pol: DNA 22.9 1.3E+02 0.0028 15.9 2.5 16 73-88 26-41 (41)
116 PF04282 DUF438: Family of unk 22.9 51 0.0011 19.5 1.1 25 40-64 7-31 (71)
117 smart00360 RRM RNA recognition 22.1 97 0.0021 15.9 2.2 20 40-59 2-21 (71)
118 PF13021 DUF3885: Domain of un 21.6 36 0.00079 17.7 0.3 12 91-102 18-29 (38)
119 PF01388 ARID: ARID/BRIGHT DNA 21.0 1.4E+02 0.003 17.7 2.8 21 40-60 67-89 (92)
120 PF10475 DUF2450: Protein of u 20.9 2.1E+02 0.0045 21.0 4.3 33 48-90 181-213 (291)
121 smart00362 RRM_2 RNA recogniti 20.8 1E+02 0.0023 15.8 2.1 21 39-59 4-24 (72)
122 COG0278 Glutaredoxin-related p 20.8 32 0.00069 22.0 -0.1 20 83-102 50-69 (105)
123 KOG0724 Zuotin and related mol 20.7 42 0.00091 25.0 0.6 57 37-97 28-84 (335)
124 PF13337 Lon_2: Putative ATP-d 20.4 2.7E+02 0.0058 22.4 5.0 35 38-72 386-423 (457)
125 PRK14548 50S ribosomal protein 20.4 96 0.0021 18.9 2.0 20 39-58 25-44 (84)
126 PF04949 Transcrip_act: Transc 20.4 1.6E+02 0.0035 20.2 3.2 25 71-95 62-86 (159)
No 1
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=2.2e-28 Score=184.16 Aligned_cols=70 Identities=40% Similarity=0.623 Sum_probs=66.7
Q ss_pred CCCCcchhhccCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhChhhHHHHHhcCC
Q 034178 32 KPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQEKNGSLILMVKIKFNQ 101 (102)
Q Consensus 32 ~~~~~y~vLgl~~~as~~eIk~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~~~~f~~ 101 (102)
...|||+||||+++||.+|||+|||+||++||||+|++.++|+++|++|++||+|||||.+|++||+||.
T Consensus 2 ~~~dyYeiLGV~k~As~~EIKkAYRkLA~kyHPD~n~g~~~AeeKFKEI~eAYEVLsD~eKRa~YD~fG~ 71 (371)
T COG0484 2 AKRDYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNPGDKEAEEKFKEINEAYEVLSDPEKRAAYDQFGH 71 (371)
T ss_pred CccchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHhhccCc
Confidence 4679999999999999999999999999999999999766799999999999999999999999999983
No 2
>KOG0713 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=8e-27 Score=172.77 Aligned_cols=78 Identities=31% Similarity=0.503 Sum_probs=73.0
Q ss_pred hhhhhhhcCCCCcchhhccCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhChhhHHHHHhcCC
Q 034178 24 FDFLSLLAKPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQEKNGSLILMVKIKFNQ 101 (102)
Q Consensus 24 ~~~~~~~~~~~~~y~vLgl~~~as~~eIk~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~~~~f~~ 101 (102)
+..........|||+||||+.+|+..|||+|||+||++||||+|++.+.|.+.|+.|+.||+|||||.+|..||+||+
T Consensus 6 ~~~~~~v~~~rDfYelLgV~k~Asd~eIKkAYRKLALk~HPDkNpddp~A~e~F~~in~AYEVLsDpekRk~YD~~GE 83 (336)
T KOG0713|consen 6 LSGAEAVLAGRDFYELLGVPKNASDQEIKKAYRKLALKYHPDKNPDDPNANEKFKEINAAYEVLSDPEKRKHYDTYGE 83 (336)
T ss_pred hhhhhhhhcCCCHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHhhhH
Confidence 445556677899999999999999999999999999999999999999999999999999999999999999999994
No 3
>PRK14288 chaperone protein DnaJ; Provisional
Probab=99.91 E-value=8e-25 Score=165.64 Aligned_cols=69 Identities=33% Similarity=0.565 Sum_probs=65.2
Q ss_pred CCCcchhhccCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhChhhHHHHHhcCC
Q 034178 33 PKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQEKNGSLILMVKIKFNQ 101 (102)
Q Consensus 33 ~~~~y~vLgl~~~as~~eIk~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~~~~f~~ 101 (102)
..|||+||||+++||.+|||+|||+||++||||+++....|.++|++|++||++|+||.+|.+||+||.
T Consensus 2 ~~dyY~vLgv~~~As~~eIkkayrkla~k~HPD~~~~~~~a~~~f~~i~~AYevLsd~~kR~~YD~~G~ 70 (369)
T PRK14288 2 ELSYYEILEVEKHSNQETIKKSYRKLALKYHPDRNAGDKEAEEKFKLINEAYGVLSDEKKRALYDRYGK 70 (369)
T ss_pred CCChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHHhccHHHHHHHHHhcc
Confidence 369999999999999999999999999999999998655689999999999999999999999999984
No 4
>PRK14296 chaperone protein DnaJ; Provisional
Probab=99.90 E-value=3.3e-24 Score=162.45 Aligned_cols=68 Identities=37% Similarity=0.471 Sum_probs=64.3
Q ss_pred CCCcchhhccCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhChhhHHHHHhcCC
Q 034178 33 PKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQEKNGSLILMVKIKFNQ 101 (102)
Q Consensus 33 ~~~~y~vLgl~~~as~~eIk~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~~~~f~~ 101 (102)
..|||+||||+++|+.+|||+|||+||++||||+++++ .|.++|++|++||++|+||.+|+.||+||.
T Consensus 3 ~~dyY~~Lgv~~~a~~~eik~ayrkla~~~HPD~n~~~-~a~~~F~~i~~AyevLsD~~KR~~YD~~G~ 70 (372)
T PRK14296 3 KKDYYEVLGVSKTASEQEIRQAYRKLAKQYHPDLNKSP-DAHDKMVEINEAADVLLDKDKRKQYDQFGH 70 (372)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc-hHHHHHHHHHHHHHHhcCHHHhhhhhhccc
Confidence 46999999999999999999999999999999999764 489999999999999999999999999984
No 5
>PRK14286 chaperone protein DnaJ; Provisional
Probab=99.90 E-value=1.1e-23 Score=159.64 Aligned_cols=69 Identities=36% Similarity=0.590 Sum_probs=65.5
Q ss_pred CCCcchhhccCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhChhhHHHHHhcCC
Q 034178 33 PKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQEKNGSLILMVKIKFNQ 101 (102)
Q Consensus 33 ~~~~y~vLgl~~~as~~eIk~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~~~~f~~ 101 (102)
..|||+||||+++|+.+|||+|||+|+++||||++++..+|.++|++|++||++|+||.+|..||+||.
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~ 71 (372)
T PRK14286 3 ERSYYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKGNKESEEKFKEATEAYEILRDPKKRQAYDQFGK 71 (372)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhccHHHHHHHHHhCc
Confidence 469999999999999999999999999999999998766699999999999999999999999999985
No 6
>PRK14279 chaperone protein DnaJ; Provisional
Probab=99.90 E-value=1.1e-23 Score=160.63 Aligned_cols=69 Identities=32% Similarity=0.419 Sum_probs=65.4
Q ss_pred CCCcchhhccCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhChhhHHHHHhcCC
Q 034178 33 PKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQEKNGSLILMVKIKFNQ 101 (102)
Q Consensus 33 ~~~~y~vLgl~~~as~~eIk~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~~~~f~~ 101 (102)
..|||+||||+++|+.+|||+|||+|+++||||++++.+.|.++|++|++||++|+||.+|+.||+||+
T Consensus 8 ~~Dyy~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vLsD~~KR~~YD~~G~ 76 (392)
T PRK14279 8 EKDFYKELGVSSDASAEEIKKAYRKLARELHPDANPGDPAAEERFKAVSEAHDVLSDPAKRKEYDETRR 76 (392)
T ss_pred ccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhcchhhhhHHHHhhh
Confidence 479999999999999999999999999999999998766689999999999999999999999999974
No 7
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=1.4e-23 Score=156.42 Aligned_cols=67 Identities=40% Similarity=0.628 Sum_probs=64.2
Q ss_pred CCCCcchhhccCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhChhhHHHHHhcCC
Q 034178 32 KPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQEKNGSLILMVKIKFNQ 101 (102)
Q Consensus 32 ~~~~~y~vLgl~~~as~~eIk~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~~~~f~~ 101 (102)
....+|+||||+++||.+|||+|||+|+++||||++++ +.++|++|..||++||||.+|.+||+||+
T Consensus 2 ~~~~~y~il~v~~~As~~eikkayrkla~k~HpDkn~~---~~ekfkei~~AyevLsd~ekr~~yD~~g~ 68 (337)
T KOG0712|consen 2 KNTKLYDILGVSPDASEEEIKKAYRKLALKYHPDKNPD---AGEKFKEISQAYEVLSDPEKREIYDQYGE 68 (337)
T ss_pred cccccceeeccCCCcCHHHHHHHHHHHHHHhCCCCCcc---HHHHHHHHHHHHHHhcCHHHHHHHHhhhh
Confidence 45689999999999999999999999999999999998 89999999999999999999999999994
No 8
>PRK14287 chaperone protein DnaJ; Provisional
Probab=99.88 E-value=6.4e-23 Score=155.39 Aligned_cols=68 Identities=34% Similarity=0.584 Sum_probs=64.0
Q ss_pred CCCcchhhccCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhChhhHHHHHhcCC
Q 034178 33 PKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQEKNGSLILMVKIKFNQ 101 (102)
Q Consensus 33 ~~~~y~vLgl~~~as~~eIk~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~~~~f~~ 101 (102)
..|||+||||+++|+.+|||+|||+|+++||||+++++ .+.++|++|++||++|+||.+|..||+||.
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~-~~~~~f~~i~~Ay~~L~d~~kR~~YD~~G~ 70 (371)
T PRK14287 3 KRDYYEVLGVDRNASVDEVKKAYRKLARKYHPDVNKAP-DAEDKFKEVKEAYDTLSDPQKKAHYDQFGH 70 (371)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCh-hHHHHHHHHHHHHHHhCcHhHHHHHHhhCC
Confidence 46999999999999999999999999999999999754 488999999999999999999999999984
No 9
>PRK14294 chaperone protein DnaJ; Provisional
Probab=99.88 E-value=7.5e-23 Score=154.72 Aligned_cols=69 Identities=36% Similarity=0.591 Sum_probs=65.5
Q ss_pred CCCcchhhccCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhChhhHHHHHhcCC
Q 034178 33 PKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQEKNGSLILMVKIKFNQ 101 (102)
Q Consensus 33 ~~~~y~vLgl~~~as~~eIk~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~~~~f~~ 101 (102)
..|||+||||+++|+.+|||+|||+|+++||||++++.+++.+.|++|++||++|+||.+|+.||+||.
T Consensus 3 ~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~~f~~~~~Ay~vL~d~~~r~~yD~~G~ 71 (366)
T PRK14294 3 KRDYYEILGVTRDASEEEIKKSYRKLAMKYHPDRNPGDKEAEELFKEAAEAYEVLSDPKKRGIYDQYGH 71 (366)
T ss_pred CCChHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHhccHHHHHHHHhhcc
Confidence 479999999999999999999999999999999998766689999999999999999999999999984
No 10
>PRK14283 chaperone protein DnaJ; Provisional
Probab=99.88 E-value=6.3e-23 Score=155.67 Aligned_cols=69 Identities=35% Similarity=0.594 Sum_probs=64.8
Q ss_pred CCCCcchhhccCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhChhhHHHHHhcCC
Q 034178 32 KPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQEKNGSLILMVKIKFNQ 101 (102)
Q Consensus 32 ~~~~~y~vLgl~~~as~~eIk~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~~~~f~~ 101 (102)
...|||+||||+++|+.+|||+|||+|+++||||++++ +.+.++|++|++||++|+||.+|.+||+||+
T Consensus 3 ~~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~-~~a~~~f~~i~~Ay~~Lsd~~kR~~YD~~G~ 71 (378)
T PRK14283 3 EKRDYYEVLGVDRNADKKEIKKAYRKLARKYHPDVSEE-EGAEEKFKEISEAYAVLSDDEKRQRYDQFGH 71 (378)
T ss_pred CcCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-ccHHHHHHHHHHHHHHhchhHHHHHHhhhcc
Confidence 35799999999999999999999999999999999986 4589999999999999999999999999984
No 11
>PRK14277 chaperone protein DnaJ; Provisional
Probab=99.88 E-value=7.7e-23 Score=155.58 Aligned_cols=69 Identities=45% Similarity=0.631 Sum_probs=65.4
Q ss_pred CCCcchhhccCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhChhhHHHHHhcCC
Q 034178 33 PKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQEKNGSLILMVKIKFNQ 101 (102)
Q Consensus 33 ~~~~y~vLgl~~~as~~eIk~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~~~~f~~ 101 (102)
..|||+||||+++||.++||+|||+|+++||||++++...++++|++|++||++|+||.+|..||+||.
T Consensus 4 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~ 72 (386)
T PRK14277 4 KKDYYEILGVDRNATEEEIKKAYRRLAKKYHPDLNPGDKEAEQKFKEINEAYEILSDPQKRAQYDQFGH 72 (386)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHhhcc
Confidence 469999999999999999999999999999999998766689999999999999999999999999984
No 12
>PRK14282 chaperone protein DnaJ; Provisional
Probab=99.88 E-value=7.7e-23 Score=154.78 Aligned_cols=69 Identities=39% Similarity=0.666 Sum_probs=64.7
Q ss_pred CCCcchhhccCCCCCHHHHHHHHHHHHHHhCCCCCCCc-hHHHHHHHHHHHHHHHhhChhhHHHHHhcCC
Q 034178 33 PKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDR-DCATSRFQEINEAYQEKNGSLILMVKIKFNQ 101 (102)
Q Consensus 33 ~~~~y~vLgl~~~as~~eIk~ayr~l~~~~HPD~~~~~-~~a~~~f~~i~~Ay~~L~d~~~r~~~~~f~~ 101 (102)
..|||+||||+++||.+|||+|||+|+++||||+++.. ..|.++|++|++||++|+||.+|..||+||.
T Consensus 3 ~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~g~ 72 (369)
T PRK14282 3 KKDYYEILGVSRNATQEEIKRAYKRLVKEWHPDRHPENRKEAEQKFKEIQEAYEVLSDPQKRAMYDRFGY 72 (369)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCccchhHHHHHHHHHHHHHHHhcChhhHHHHhhcCc
Confidence 46999999999999999999999999999999999753 4589999999999999999999999999984
No 13
>PRK14285 chaperone protein DnaJ; Provisional
Probab=99.88 E-value=7.6e-23 Score=154.69 Aligned_cols=68 Identities=35% Similarity=0.566 Sum_probs=65.1
Q ss_pred CCcchhhccCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhChhhHHHHHhcCC
Q 034178 34 KDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQEKNGSLILMVKIKFNQ 101 (102)
Q Consensus 34 ~~~y~vLgl~~~as~~eIk~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~~~~f~~ 101 (102)
.|||+||||+++||.+|||+|||+|+++||||++++.+.+.++|++|++||++|+||.+|..||+||+
T Consensus 3 ~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yd~~g~ 70 (365)
T PRK14285 3 RDYYEILGLSKGASKDEIKKAYRKIAIKYHPDKNKGNKEAESIFKEATEAYEVLIDDNKRAQYDRFGH 70 (365)
T ss_pred CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHcCcchhHHHHhcCc
Confidence 69999999999999999999999999999999998766689999999999999999999999999985
No 14
>PRK14276 chaperone protein DnaJ; Provisional
Probab=99.88 E-value=9.1e-23 Score=154.92 Aligned_cols=68 Identities=29% Similarity=0.552 Sum_probs=64.3
Q ss_pred CCCcchhhccCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhChhhHHHHHhcCC
Q 034178 33 PKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQEKNGSLILMVKIKFNQ 101 (102)
Q Consensus 33 ~~~~y~vLgl~~~as~~eIk~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~~~~f~~ 101 (102)
..|||+||||+++||.+|||+|||+|+++||||+++++. +.++|++|++||++|+||.+|++||+||+
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~-a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~ 70 (380)
T PRK14276 3 NTEYYDRLGVSKDASQDEIKKAYRKLSKKYHPDINKEPG-AEEKYKEVQEAYETLSDPQKRAAYDQYGA 70 (380)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcC-HHHHHHHHHHHHHHhcCHhhhhhHhhcCC
Confidence 469999999999999999999999999999999998654 89999999999999999999999999985
No 15
>PRK14297 chaperone protein DnaJ; Provisional
Probab=99.88 E-value=9.5e-23 Score=154.79 Aligned_cols=69 Identities=38% Similarity=0.640 Sum_probs=65.5
Q ss_pred CCCcchhhccCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhChhhHHHHHhcCC
Q 034178 33 PKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQEKNGSLILMVKIKFNQ 101 (102)
Q Consensus 33 ~~~~y~vLgl~~~as~~eIk~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~~~~f~~ 101 (102)
..|||+||||+++|+.++||+|||+|+++||||++++.+.|.++|++|++||++|+||.+|+.||+||+
T Consensus 3 ~~d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~G~ 71 (380)
T PRK14297 3 SKDYYEVLGLEKGASDDEIKKAFRKLAIKYHPDKNKGNKEAEEKFKEINEAYQVLSDPQKKAQYDQFGT 71 (380)
T ss_pred CCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcCHhhhCchhhcCc
Confidence 369999999999999999999999999999999998766689999999999999999999999999985
No 16
>PRK14298 chaperone protein DnaJ; Provisional
Probab=99.88 E-value=9.3e-23 Score=154.80 Aligned_cols=69 Identities=38% Similarity=0.628 Sum_probs=64.4
Q ss_pred CCCCcchhhccCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhChhhHHHHHhcCC
Q 034178 32 KPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQEKNGSLILMVKIKFNQ 101 (102)
Q Consensus 32 ~~~~~y~vLgl~~~as~~eIk~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~~~~f~~ 101 (102)
...|||+||||+++|+.+|||+|||+|+++||||+++++ .+.++|++|++||++|+||.+|..||+||.
T Consensus 3 ~~~d~y~iLgv~~~a~~~eik~ayr~la~~~HPD~~~~~-~~~~~f~~i~~Ay~vL~d~~kR~~YD~~G~ 71 (377)
T PRK14298 3 TTRDYYEILGLSKDASVEDIKKAYRKLAMKYHPDKNKEP-DAEEKFKEISEAYAVLSDAEKRAQYDRFGH 71 (377)
T ss_pred CCCCHHHhhCCCCCCCHHHHHHHHHHHHHHhCccccCCh-hHHHHHHHHHHHHHHhcchHhhhhhhhcCc
Confidence 346999999999999999999999999999999999764 488999999999999999999999999984
No 17
>PRK14301 chaperone protein DnaJ; Provisional
Probab=99.88 E-value=1.1e-22 Score=154.30 Aligned_cols=69 Identities=36% Similarity=0.622 Sum_probs=65.5
Q ss_pred CCCcchhhccCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhChhhHHHHHhcCC
Q 034178 33 PKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQEKNGSLILMVKIKFNQ 101 (102)
Q Consensus 33 ~~~~y~vLgl~~~as~~eIk~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~~~~f~~ 101 (102)
..|||+||||+++||.++||+|||+|+++||||++++..++.++|++|++||++|+||.+|..||+||.
T Consensus 3 ~~~~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~g~ 71 (373)
T PRK14301 3 QRDYYEVLGVSRDASEDEIKKAYRKLALQYHPDRNPDNPEAEQKFKEAAEAYEVLRDAEKRARYDRFGH 71 (373)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHhCCCcCCCChHHHHHHHHHHHHHHHhcchhhhhhhhhccc
Confidence 469999999999999999999999999999999998766689999999999999999999999999984
No 18
>PRK14299 chaperone protein DnaJ; Provisional
Probab=99.88 E-value=1.6e-22 Score=148.95 Aligned_cols=68 Identities=37% Similarity=0.559 Sum_probs=64.1
Q ss_pred CCCcchhhccCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhChhhHHHHHhcCC
Q 034178 33 PKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQEKNGSLILMVKIKFNQ 101 (102)
Q Consensus 33 ~~~~y~vLgl~~~as~~eIk~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~~~~f~~ 101 (102)
..|||+||||+++||.+|||+|||+|+++||||+++++ .+.++|++|++||++|+||.+|..||+||.
T Consensus 3 ~~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~-~~~~~f~~i~~Ay~~L~d~~kr~~yD~~g~ 70 (291)
T PRK14299 3 YKDYYAILGVPKNASQDEIKKAFKKLARKYHPDVNKSP-GAEEKFKEINEAYTVLSDPEKRRIYDTYGT 70 (291)
T ss_pred CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCh-hHHHHHHHHHHHHHHhcCHHHHHHHHhcCC
Confidence 46999999999999999999999999999999999754 489999999999999999999999999985
No 19
>KOG0716 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=8.8e-23 Score=147.64 Aligned_cols=69 Identities=38% Similarity=0.556 Sum_probs=66.1
Q ss_pred CCCcchhhccCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhChhhHHHHHhcCC
Q 034178 33 PKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQEKNGSLILMVKIKFNQ 101 (102)
Q Consensus 33 ~~~~y~vLgl~~~as~~eIk~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~~~~f~~ 101 (102)
..++|+||||+++|+.++|||+||+|+++||||++++.+++.++|++||+||+||+||.+|..||+||.
T Consensus 30 ~~~LYdVLgl~k~at~d~IKKaYR~L~~k~HPD~~gd~P~~~dkf~eIN~Ay~ILsD~~kR~~YD~~g~ 98 (279)
T KOG0716|consen 30 RLDLYDVLGLPKTATKDEIKKAYRKLALKYHPDKNGDNPEATDKFKEINTAYAILSDPTKRNVYDEYGE 98 (279)
T ss_pred hhHHHHHhCCCcccchHHHHHHHHHHHHHhCCCcCCCCchhHHHHHHHHHHHHHhcChhhhhhHHHhhh
Confidence 568999999999999999999999999999999999977799999999999999999999999999985
No 20
>PRK14280 chaperone protein DnaJ; Provisional
Probab=99.87 E-value=2e-22 Score=152.85 Aligned_cols=68 Identities=34% Similarity=0.604 Sum_probs=64.2
Q ss_pred CCCcchhhccCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhChhhHHHHHhcCC
Q 034178 33 PKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQEKNGSLILMVKIKFNQ 101 (102)
Q Consensus 33 ~~~~y~vLgl~~~as~~eIk~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~~~~f~~ 101 (102)
..|||+||||+++|+.++||+|||+|+++||||+++++. +.++|++|++||++|+||.+|.+||+||.
T Consensus 3 ~~~~y~iLgv~~~a~~~eik~ayr~la~~~HpD~~~~~~-a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~ 70 (376)
T PRK14280 3 KRDYYEVLGVSKSASKDEIKKAYRKLSKKYHPDINKEEG-ADEKFKEISEAYEVLSDDQKRAQYDQFGH 70 (376)
T ss_pred CCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcc-HHHHHHHHHHHHHHhccHhHHHHHHhcCc
Confidence 469999999999999999999999999999999998654 89999999999999999999999999984
No 21
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=99.87 E-value=1.5e-22 Score=155.47 Aligned_cols=65 Identities=31% Similarity=0.547 Sum_probs=61.6
Q ss_pred CCCcchhhccCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhChhhHHHHHhcCC
Q 034178 33 PKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQEKNGSLILMVKIKFNQ 101 (102)
Q Consensus 33 ~~~~y~vLgl~~~as~~eIk~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~~~~f~~ 101 (102)
..+||+||||+++||.+|||+|||+||++||||++++ .++|++|++||++|+||.+|+.||+||.
T Consensus 27 ~~d~Y~vLGV~~~As~~eIKkAYrkla~k~HPDk~~~----~e~F~~i~~AYevLsD~~kR~~YD~~G~ 91 (421)
T PTZ00037 27 NEKLYEVLNLSKDCTTSEIKKAYRKLAIKHHPDKGGD----PEKFKEISRAYEVLSDPEKRKIYDEYGE 91 (421)
T ss_pred chhHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCch----HHHHHHHHHHHHHhccHHHHHHHhhhcc
Confidence 5799999999999999999999999999999999863 5899999999999999999999999984
No 22
>PRK14291 chaperone protein DnaJ; Provisional
Probab=99.87 E-value=2.9e-22 Score=152.26 Aligned_cols=68 Identities=46% Similarity=0.643 Sum_probs=64.1
Q ss_pred CCCcchhhccCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhChhhHHHHHhcCC
Q 034178 33 PKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQEKNGSLILMVKIKFNQ 101 (102)
Q Consensus 33 ~~~~y~vLgl~~~as~~eIk~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~~~~f~~ 101 (102)
..|||+||||+++|+.++||+|||+|+++||||+++++ .+.++|++|++||++|+||.+|.+||+||.
T Consensus 2 ~~d~Y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~-~~~~~f~~i~~Ay~vLsd~~kR~~YD~~g~ 69 (382)
T PRK14291 2 KKDYYEILGVSRNATQEEIKKAYRRLARKYHPDFNKNP-EAEEKFKEINEAYQVLSDPEKRKLYDQFGH 69 (382)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCc-cHHHHHHHHHHHHHHhcCHHHHHHHhhhcc
Confidence 36999999999999999999999999999999999874 488999999999999999999999999984
No 23
>PRK14284 chaperone protein DnaJ; Provisional
Probab=99.87 E-value=3.1e-22 Score=152.47 Aligned_cols=68 Identities=37% Similarity=0.581 Sum_probs=64.7
Q ss_pred CCcchhhccCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhChhhHHHHHhcCC
Q 034178 34 KDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQEKNGSLILMVKIKFNQ 101 (102)
Q Consensus 34 ~~~y~vLgl~~~as~~eIk~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~~~~f~~ 101 (102)
.|||+||||+++||.++||+|||+|+++||||++++...+.++|++|++||++|+||.+|..||+||.
T Consensus 1 ~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~ 68 (391)
T PRK14284 1 MDYYTILGVSKTASPEEIKKAYRKLAVKYHPDKNPGDAEAEKRFKEVSEAYEVLSDAQKRESYDRYGK 68 (391)
T ss_pred CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhcCHHHHHHHHhccc
Confidence 38999999999999999999999999999999998776799999999999999999999999999984
No 24
>PRK14278 chaperone protein DnaJ; Provisional
Probab=99.87 E-value=2.3e-22 Score=152.65 Aligned_cols=67 Identities=31% Similarity=0.462 Sum_probs=63.6
Q ss_pred CCcchhhccCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhChhhHHHHHhcCC
Q 034178 34 KDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQEKNGSLILMVKIKFNQ 101 (102)
Q Consensus 34 ~~~y~vLgl~~~as~~eIk~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~~~~f~~ 101 (102)
.|||+||||+++|+.++||+|||+|+++||||+++++ .|.++|++|++||++|+||.+|..||+||+
T Consensus 3 ~d~y~iLgv~~~a~~~eik~ayr~la~~~hpD~~~~~-~a~~~f~~i~~Ay~vL~d~~~r~~YD~~G~ 69 (378)
T PRK14278 3 RDYYGLLGVSRNASDAEIKRAYRKLARELHPDVNPDE-EAQEKFKEISVAYEVLSDPEKRRIVDLGGD 69 (378)
T ss_pred CCcceecCCCCCCCHHHHHHHHHHHHHHHCCCCCCcH-HHHHHHHHHHHHHHHhchhhhhhhhhccCC
Confidence 6999999999999999999999999999999999854 489999999999999999999999999984
No 25
>PRK10767 chaperone protein DnaJ; Provisional
Probab=99.87 E-value=3.7e-22 Score=151.10 Aligned_cols=69 Identities=33% Similarity=0.620 Sum_probs=65.2
Q ss_pred CCCcchhhccCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhChhhHHHHHhcCC
Q 034178 33 PKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQEKNGSLILMVKIKFNQ 101 (102)
Q Consensus 33 ~~~~y~vLgl~~~as~~eIk~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~~~~f~~ 101 (102)
..|||+||||+++||.++||+|||+|+++||||++++...+.++|++|++||++|+||.+|..||+||+
T Consensus 3 ~~d~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~g~ 71 (371)
T PRK10767 3 KRDYYEVLGVSRNASEDEIKKAYRKLAMKYHPDRNPGDKEAEEKFKEIKEAYEVLSDPQKRAAYDQYGH 71 (371)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCcHHHHHHHHHHHHHHHHhcchhhhhHhhhccc
Confidence 469999999999999999999999999999999998666689999999999999999999999999984
No 26
>PRK14295 chaperone protein DnaJ; Provisional
Probab=99.87 E-value=3.3e-22 Score=152.31 Aligned_cols=69 Identities=42% Similarity=0.591 Sum_probs=65.0
Q ss_pred CCCcchhhccCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhChhhHHHHHh----cCC
Q 034178 33 PKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQEKNGSLILMVKIK----FNQ 101 (102)
Q Consensus 33 ~~~~y~vLgl~~~as~~eIk~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~~~~----f~~ 101 (102)
..|||+||||+++|+.+|||+|||+|+++||||+++....+.++|++|++||++|+||.+|..||+ ||.
T Consensus 8 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~~~~~G~ 80 (389)
T PRK14295 8 EKDYYKVLGVPKDATEAEIKKAYRKLAREYHPDANKGDAKAEERFKEISEAYDVLSDEKKRKEYDEARSLFGN 80 (389)
T ss_pred ccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchhHHHHHHHHHHHHHHHCchhhHHHHHHHHhhhcc
Confidence 469999999999999999999999999999999998766689999999999999999999999999 873
No 27
>PRK14281 chaperone protein DnaJ; Provisional
Probab=99.87 E-value=3.5e-22 Score=152.46 Aligned_cols=68 Identities=38% Similarity=0.623 Sum_probs=64.9
Q ss_pred CCcchhhccCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhChhhHHHHHhcCC
Q 034178 34 KDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQEKNGSLILMVKIKFNQ 101 (102)
Q Consensus 34 ~~~y~vLgl~~~as~~eIk~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~~~~f~~ 101 (102)
.|||+||||+++|+.++||+|||+|+++||||++++...+.++|++|++||++|+||.+|..||+||.
T Consensus 3 ~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~g~ 70 (397)
T PRK14281 3 RDYYEVLGVSRSADKDEIKKAYRKLALKYHPDKNPDNKEAEEHFKEVNEAYEVLSNDDKRRRYDQFGH 70 (397)
T ss_pred CChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhhhhhhhhhhhhccc
Confidence 69999999999999999999999999999999998766689999999999999999999999999984
No 28
>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Such a structure is shown in the following schematic representation: +------------+-+-------+-----+-----------+--------------------------------+ | N-terminal | | Gly-R | | CXXCXGXG | C-terminal | +------------+-+-------+-----+-----------+--------------------------------+ It is thought that the 'J' domain of DnaJ mediates the interaction with the dnaK protein and consists of four helices, the second of which has a charged surface that includes at least one pair of basic residues that are essential for interaction with the ATPase domain of Hsp70. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins [], either together or separately. In yeast, J-domains have been classified into 3 groups; the class III proteins are functionally distinct and do not appear to act as molecular chaperones []. ; GO: 0031072 heat shock protein binding; PDB: 2GUZ_C 2L6L_A 1HDJ_A 2EJ7_A 1FPO_C 2CUG_A 2QSA_A 2OCH_A 3BVO_B 3APQ_A ....
Probab=99.86 E-value=1.1e-21 Score=114.62 Aligned_cols=63 Identities=35% Similarity=0.499 Sum_probs=59.6
Q ss_pred CcchhhccCCCCCHHHHHHHHHHHHHHhCCCCCCCch-HHHHHHHHHHHHHHHhhChhhHHHHH
Q 034178 35 DYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRD-CATSRFQEINEAYQEKNGSLILMVKI 97 (102)
Q Consensus 35 ~~y~vLgl~~~as~~eIk~ayr~l~~~~HPD~~~~~~-~a~~~f~~i~~Ay~~L~d~~~r~~~~ 97 (102)
|||+||||+++++.++||++|+++++.+|||++++.. .+.+.|..|++||++|++|..|..||
T Consensus 1 ~~y~iLgl~~~~~~~eik~~y~~l~~~~HPD~~~~~~~~~~~~~~~i~~Ay~~L~~~~~R~~YD 64 (64)
T PF00226_consen 1 NPYEILGLPPDASDEEIKKAYRRLSKQYHPDKNSGDEAEAEEKFARINEAYEILSDPERRRRYD 64 (64)
T ss_dssp HHHHHCTSTTTSSHHHHHHHHHHHHHHTSTTTGTSTHHHHHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred ChHHHCCCCCCCCHHHHHHHHHhhhhccccccchhhhhhhhHHHHHHHHHHHHhCCHHHHHhcC
Confidence 5899999999999999999999999999999988764 68899999999999999999999987
No 29
>PRK14289 chaperone protein DnaJ; Provisional
Probab=99.86 E-value=9.7e-22 Score=149.51 Aligned_cols=69 Identities=32% Similarity=0.503 Sum_probs=65.7
Q ss_pred CCCcchhhccCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhChhhHHHHHhcCC
Q 034178 33 PKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQEKNGSLILMVKIKFNQ 101 (102)
Q Consensus 33 ~~~~y~vLgl~~~as~~eIk~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~~~~f~~ 101 (102)
..|||+||||+++|+.+|||+|||+|+++||||++++.+.+.++|++|++||++|+||.+|..||+||+
T Consensus 4 ~~~~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~yD~~G~ 72 (386)
T PRK14289 4 KRDYYEVLGVSKTATVDEIKKAYRKKAIQYHPDKNPGDKEAEEKFKEAAEAYDVLSDPDKRSRYDQFGH 72 (386)
T ss_pred cCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHHhcc
Confidence 469999999999999999999999999999999998776799999999999999999999999999984
No 30
>PRK14290 chaperone protein DnaJ; Provisional
Probab=99.85 E-value=1.6e-21 Score=147.48 Aligned_cols=68 Identities=38% Similarity=0.585 Sum_probs=64.2
Q ss_pred CCcchhhccCCCCCHHHHHHHHHHHHHHhCCCCCCCc-hHHHHHHHHHHHHHHHhhChhhHHHHHhcCC
Q 034178 34 KDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDR-DCATSRFQEINEAYQEKNGSLILMVKIKFNQ 101 (102)
Q Consensus 34 ~~~y~vLgl~~~as~~eIk~ayr~l~~~~HPD~~~~~-~~a~~~f~~i~~Ay~~L~d~~~r~~~~~f~~ 101 (102)
.|||+||||+++|+.+|||+|||+|++++|||+++.. ..|.++|++|++||++|+||.+|.+||+||+
T Consensus 3 ~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~G~ 71 (365)
T PRK14290 3 KDYYKILGVDRNASQEDIKKAFRELAKKWHPDLHPGNKAEAEEKFKEISEAYEVLSDPQKRRQYDQTGT 71 (365)
T ss_pred CChhhhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchhHHHHHHHHHHHHHHHhcChhhhhhhcccCC
Confidence 6999999999999999999999999999999999865 3689999999999999999999999999984
No 31
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=99.84 E-value=3.1e-21 Score=145.22 Aligned_cols=66 Identities=45% Similarity=0.699 Sum_probs=62.2
Q ss_pred CcchhhccCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhChhhHHHHHhcCC
Q 034178 35 DYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQEKNGSLILMVKIKFNQ 101 (102)
Q Consensus 35 ~~y~vLgl~~~as~~eIk~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~~~~f~~ 101 (102)
|||+||||+++|+.++||+|||+|+++||||+++.+ .+.++|++|++||++|+||.+|..||+||.
T Consensus 1 d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~-~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~ 66 (354)
T TIGR02349 1 DYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNKDK-EAEEKFKEINEAYEVLSDPEKRAQYDQFGH 66 (354)
T ss_pred ChHHhCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCc-cHHHHHHHHHHHHHHhhChHHHHhhhhccc
Confidence 699999999999999999999999999999999743 488999999999999999999999999984
No 32
>PRK14300 chaperone protein DnaJ; Provisional
Probab=99.84 E-value=3.6e-21 Score=145.88 Aligned_cols=67 Identities=31% Similarity=0.594 Sum_probs=63.2
Q ss_pred CCcchhhccCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhChhhHHHHHhcCC
Q 034178 34 KDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQEKNGSLILMVKIKFNQ 101 (102)
Q Consensus 34 ~~~y~vLgl~~~as~~eIk~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~~~~f~~ 101 (102)
.|||+||||+++||.+|||+|||+++++||||+++.. .++++|++|++||++|+|+.+|..||+||.
T Consensus 3 ~~~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~-~~~~~f~~i~~Ay~~L~d~~~r~~yD~~G~ 69 (372)
T PRK14300 3 QDYYQILGVSKTASQADLKKAYLKLAKQYHPDTTDAK-DAEKKFKEINAAYDVLKDEQKRAAYDRFGH 69 (372)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc-CHHHHHHHHHHHHHHhhhHhHhhHHHhccc
Confidence 6999999999999999999999999999999998754 388999999999999999999999999984
No 33
>PRK10266 curved DNA-binding protein CbpA; Provisional
Probab=99.84 E-value=5.1e-21 Score=141.78 Aligned_cols=68 Identities=34% Similarity=0.460 Sum_probs=63.6
Q ss_pred CCCcchhhccCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhChhhHHHHHhcCC
Q 034178 33 PKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQEKNGSLILMVKIKFNQ 101 (102)
Q Consensus 33 ~~~~y~vLgl~~~as~~eIk~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~~~~f~~ 101 (102)
..|||+||||+++++.++||+|||+|++++|||+++.. .+.++|++|++||++|+||.+|..||+||.
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~k~HPD~~~~~-~~~~~f~~i~~Ay~~L~~~~kr~~yD~~g~ 70 (306)
T PRK10266 3 LKDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEP-DAEARFKEVAEAWEVLSDEQRRAEYDQLWQ 70 (306)
T ss_pred cCChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc-cHHHHHHHHHHHHHHhhhHHHHHHHHHhhc
Confidence 36999999999999999999999999999999998765 489999999999999999999999999873
No 34
>PRK14293 chaperone protein DnaJ; Provisional
Probab=99.84 E-value=4.8e-21 Score=145.26 Aligned_cols=67 Identities=40% Similarity=0.635 Sum_probs=63.5
Q ss_pred CCcchhhccCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhChhhHHHHHhcCC
Q 034178 34 KDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQEKNGSLILMVKIKFNQ 101 (102)
Q Consensus 34 ~~~y~vLgl~~~as~~eIk~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~~~~f~~ 101 (102)
.|||+||||+++|+.++||+|||+|+++||||+++.+. +.++|+.|++||++|+||.+|.+||+||+
T Consensus 3 ~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~-a~~~f~~i~~Ay~vL~~~~~R~~yd~~g~ 69 (374)
T PRK14293 3 ADYYEILGVSRDADKDELKRAYRRLARKYHPDVNKEPG-AEDRFKEINRAYEVLSDPETRARYDQFGE 69 (374)
T ss_pred CChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCcC-HHHHHHHHHHHHHHHhchHHHHHHhhccc
Confidence 69999999999999999999999999999999998644 88999999999999999999999999984
No 35
>PRK14292 chaperone protein DnaJ; Provisional
Probab=99.84 E-value=5.2e-21 Score=144.85 Aligned_cols=67 Identities=39% Similarity=0.644 Sum_probs=63.3
Q ss_pred CCcchhhccCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhChhhHHHHHhcCC
Q 034178 34 KDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQEKNGSLILMVKIKFNQ 101 (102)
Q Consensus 34 ~~~y~vLgl~~~as~~eIk~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~~~~f~~ 101 (102)
.|||+||||+++|+.++||+|||+|++++|||++++. .+.++|+.|++||++|+||.+|.+||+||.
T Consensus 2 ~d~y~~Lgv~~~a~~~~ik~ayr~l~~~~hpD~~~~~-~a~~~~~~i~~Ay~vL~d~~~r~~yd~~G~ 68 (371)
T PRK14292 2 MDYYELLGVSRTASADEIKSAYRKLALKYHPDRNKEK-GAAEKFAQINEAYAVLSDAEKRAHYDRFGT 68 (371)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCh-hHHHHHHHHHHHHHHhcchhhhhhHhhcCC
Confidence 4899999999999999999999999999999999864 489999999999999999999999999984
No 36
>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=5e-21 Score=141.06 Aligned_cols=66 Identities=39% Similarity=0.568 Sum_probs=63.9
Q ss_pred CcchhhccCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhChhhHHHHHhcCC
Q 034178 35 DYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQEKNGSLILMVKIKFNQ 101 (102)
Q Consensus 35 ~~y~vLgl~~~as~~eIk~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~~~~f~~ 101 (102)
|||+||||+++|+..|||+||++|+++||||.+.++ ++.++|++|.+||++|+|+.+|..||++|.
T Consensus 44 d~Y~vLgv~~~At~~EIK~Af~~LaKkyHPD~n~~~-~a~~kF~eI~~AYEiLsd~eKR~~YD~~~~ 109 (288)
T KOG0715|consen 44 DYYKVLGVSRNATLSEIKSAFRKLAKKYHPDVNKDK-EASKKFKEISEAYEILSDEEKRQEYDVYGL 109 (288)
T ss_pred chhhhhCcCCCCCHHHHHHHHHHHHHhhCCCCCCCc-chhhHHHHHHHHHHHhcCHHHHHHHHHhhh
Confidence 999999999999999999999999999999999998 499999999999999999999999999873
No 37
>KOG0691 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=7.3e-21 Score=140.28 Aligned_cols=69 Identities=35% Similarity=0.557 Sum_probs=66.7
Q ss_pred CCCcchhhccCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhChhhHHHHHhcCC
Q 034178 33 PKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQEKNGSLILMVKIKFNQ 101 (102)
Q Consensus 33 ~~~~y~vLgl~~~as~~eIk~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~~~~f~~ 101 (102)
..|||.||||+++++..+|++|||..+++||||+|++.+.|.+.|+.|.+||++|+|+..|..||++|.
T Consensus 4 ~~dyY~lLgi~~~at~~eIkKaYr~kaL~~HPDKNp~dP~A~ekFq~L~eAy~VL~D~~~R~~YDk~~k 72 (296)
T KOG0691|consen 4 DTDYYDLLGISEDATDAEIKKAYRKKALQYHPDKNPGDPQAAEKFQELSEAYEVLSDEESRAAYDKLRK 72 (296)
T ss_pred cchHHHHhCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHHHhh
Confidence 679999999999999999999999999999999999998899999999999999999999999999973
No 38
>KOG0718 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=1.7e-20 Score=143.94 Aligned_cols=70 Identities=31% Similarity=0.530 Sum_probs=65.6
Q ss_pred CCCCcchhhccCCCCCHHHHHHHHHHHHHHhCCCCCCCc---hHHHHHHHHHHHHHHHhhChhhHHHHHhcCC
Q 034178 32 KPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDR---DCATSRFQEINEAYQEKNGSLILMVKIKFNQ 101 (102)
Q Consensus 32 ~~~~~y~vLgl~~~as~~eIk~ayr~l~~~~HPD~~~~~---~~a~~~f~~i~~Ay~~L~d~~~r~~~~~f~~ 101 (102)
...++|.+|+|+++||.+|||+|||++++.||||++.++ ..|++.|+.|..|||+|+||..|.+||.||.
T Consensus 7 ~e~e~Ya~LNlpkdAt~eeI~~AYrr~~~lfHPDkh~dpd~K~~AE~~F~~i~~AyEVLsDp~kRaIYD~~G~ 79 (546)
T KOG0718|consen 7 DEIELYALLNLPKDATDEEIKKAYRRLSRLFHPDKHTDPDQKKAAEEKFQRIQRAYEVLSDPQKRAIYDNYGE 79 (546)
T ss_pred chhhHHHHhCCCcccCHHHHHHHHHHHHHhcCCcccCChhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhh
Confidence 456999999999999999999999999999999999876 4599999999999999999999999999994
No 39
>PTZ00341 Ring-infected erythrocyte surface antigen; Provisional
Probab=99.82 E-value=2.7e-20 Score=152.43 Aligned_cols=70 Identities=30% Similarity=0.384 Sum_probs=66.0
Q ss_pred cCCCCcchhhccCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhChhhHHHHHhcCC
Q 034178 31 AKPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQEKNGSLILMVKIKFNQ 101 (102)
Q Consensus 31 ~~~~~~y~vLgl~~~as~~eIk~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~~~~f~~ 101 (102)
....+||+||||+++||..+||+|||+||++||||+++++ .|.++|+.|++||++|+||.+|..||+||.
T Consensus 570 ~~d~dYYdILGVs~dAS~~EIKKAYRKLAlkyHPDKN~~~-~A~ekFq~I~EAYeVLSDp~kRk~YD~~G~ 639 (1136)
T PTZ00341 570 IPDTLFYDILGVGVNADMKEISERYFKLAENYYPPKRSGN-EGFHKFKKINEAYQILGDIDKKKMYNKFGY 639 (1136)
T ss_pred CCCCChHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc-hHHHHHHHHHHHHHHhCCHHHHHHHhhccc
Confidence 3567999999999999999999999999999999999876 488999999999999999999999999995
No 40
>smart00271 DnaJ DnaJ molecular chaperone homology domain.
Probab=99.82 E-value=4.5e-20 Score=106.27 Aligned_cols=58 Identities=47% Similarity=0.767 Sum_probs=54.0
Q ss_pred CCcchhhccCCCCCHHHHHHHHHHHHHHhCCCCCCC-chHHHHHHHHHHHHHHHhhChh
Q 034178 34 KDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKD-RDCATSRFQEINEAYQEKNGSL 91 (102)
Q Consensus 34 ~~~y~vLgl~~~as~~eIk~ayr~l~~~~HPD~~~~-~~~a~~~f~~i~~Ay~~L~d~~ 91 (102)
.+||+||||+++++.++||++|+++++.+|||++++ ...+.+.|..|++||++|+||.
T Consensus 1 ~~~y~vLgl~~~~~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~~~~~l~~Ay~~L~~~~ 59 (60)
T smart00271 1 TDYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPGDKEEAEEKFKEINEAYEVLSDPE 59 (60)
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHHHcCCC
Confidence 489999999999999999999999999999999986 4568999999999999999984
No 41
>cd06257 DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.
Probab=99.81 E-value=9.6e-20 Score=103.12 Aligned_cols=55 Identities=53% Similarity=0.838 Sum_probs=51.9
Q ss_pred CcchhhccCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhC
Q 034178 35 DYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQEKNG 89 (102)
Q Consensus 35 ~~y~vLgl~~~as~~eIk~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d 89 (102)
|||+||||+++++.++||++|+++++.+|||++++...+.+.|..|++||++|+|
T Consensus 1 ~~y~vLgl~~~~~~~~ik~~y~~l~~~~HPD~~~~~~~~~~~~~~l~~Ay~~L~d 55 (55)
T cd06257 1 DYYDILGVPPDASDEEIKKAYRKLALKYHPDKNPDDPEAEEKFKEINEAYEVLSD 55 (55)
T ss_pred ChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcC
Confidence 6999999999999999999999999999999998755589999999999999986
No 42
>KOG0721 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=8.9e-20 Score=128.64 Aligned_cols=71 Identities=34% Similarity=0.475 Sum_probs=66.6
Q ss_pred cCCCCcchhhccCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhChhhHHHHHhcCC
Q 034178 31 AKPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQEKNGSLILMVKIKFNQ 101 (102)
Q Consensus 31 ~~~~~~y~vLgl~~~as~~eIk~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~~~~f~~ 101 (102)
...-|+|+||||+++++..|||+|||+|++++||||++..++.++.|..|.+||+.|+|+.+|.++.+||.
T Consensus 96 ~~~fDPyEILGl~pgas~~eIKkaYR~LSik~HPDK~~~~~~~e~~~~~I~KAY~aLTD~~sreN~ekYG~ 166 (230)
T KOG0721|consen 96 RQKFDPYEILGLDPGASEKEIKKAYRRLSIKYHPDKQPPEEGDEEFFEAIAKAYQALTDKKSRENWEKYGN 166 (230)
T ss_pred hhcCCcHHhhCCCCCCCHHHHHHHHHHhhhhhCCCcCCCcchhHHHHHHHHHHHHHhcchhhHHHHHHhCC
Confidence 35669999999999999999999999999999999998877788999999999999999999999999984
No 43
>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=7.1e-20 Score=140.25 Aligned_cols=68 Identities=40% Similarity=0.602 Sum_probs=63.0
Q ss_pred CCCCcchhhccCCCCCHHHHHHHHHHHHHHhCCCCCCCc-hHHHHHHHHHHHHHHHhhChhhHHHHHhc
Q 034178 32 KPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDR-DCATSRFQEINEAYQEKNGSLILMVKIKF 99 (102)
Q Consensus 32 ~~~~~y~vLgl~~~as~~eIk~ayr~l~~~~HPD~~~~~-~~a~~~f~~i~~Ay~~L~d~~~r~~~~~f 99 (102)
....||+||||...++..+||++||+||++||||+++.. ++++++|+.|+.||+|||||..|.-||..
T Consensus 6 ~~~c~YE~L~v~~~a~d~eik~~YRklALq~HPDknpd~ieeat~~F~~i~aAYeVLSdp~eR~wyd~h 74 (508)
T KOG0717|consen 6 KKRCYYEVLGVERDADDDEIKKNYRKLALQYHPDKNPDRIEEATQQFQLIQAAYEVLSDPQERAWYDSH 74 (508)
T ss_pred hhhHHHHHhcccccCCHHHHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHHHHHhcChHhhhhHHHH
Confidence 456899999999999999999999999999999997765 67999999999999999999999998863
No 44
>KOG0719 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.78 E-value=4.8e-19 Score=126.23 Aligned_cols=71 Identities=39% Similarity=0.557 Sum_probs=65.3
Q ss_pred cCCCCcchhhccCCCCCHHHHHHHHHHHHHHhCCCCCC--CchHHHHHHHHHHHHHHHhhChhhHHHHHhcCC
Q 034178 31 AKPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQK--DRDCATSRFQEINEAYQEKNGSLILMVKIKFNQ 101 (102)
Q Consensus 31 ~~~~~~y~vLgl~~~as~~eIk~ayr~l~~~~HPD~~~--~~~~a~~~f~~i~~Ay~~L~d~~~r~~~~~f~~ 101 (102)
....++|+||||..+|+..+|++||+++++++|||+++ ...++++.|+.|+.||.||+|...|++||+-|+
T Consensus 11 f~~~d~YevLGVer~a~~~eIrkAY~klal~~HPDk~~eed~~ea~~kFq~l~k~y~iLsDeekR~~YDetG~ 83 (264)
T KOG0719|consen 11 FNKKDLYEVLGVERDATDKEIRKAYHKLALRLHPDKNHEEDKVEATEKFQQLQKAYQILSDEEKRAVYDETGS 83 (264)
T ss_pred ccccCHHHHhhhcccCCHHHHHHHHHHHHHHhCCCcchhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHhccCC
Confidence 34559999999999999999999999999999999995 345699999999999999999999999999885
No 45
>PHA03102 Small T antigen; Reviewed
Probab=99.78 E-value=3.6e-19 Score=120.62 Aligned_cols=65 Identities=25% Similarity=0.418 Sum_probs=60.3
Q ss_pred CCcchhhccCCCC--CHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhChhhHHHHHhcCCC
Q 034178 34 KDYYKILEVDYDA--TEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQEKNGSLILMVKIKFNQF 102 (102)
Q Consensus 34 ~~~y~vLgl~~~a--s~~eIk~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~~~~f~~~ 102 (102)
..+|+||||+++| |.++||+|||++++.+|||++++ .+.|+.|++||++|+|+..|..||.||.+
T Consensus 5 ~~l~~vLGl~~~A~~s~~eIKkAYr~la~~~HPDkgg~----~e~~k~in~Ay~~L~d~~~r~~yd~~g~~ 71 (153)
T PHA03102 5 KELMDLLGLPRSAWGNLPLMRKAYLRKCLEFHPDKGGD----EEKMKELNTLYKKFRESVKSLRDLDGEED 71 (153)
T ss_pred HHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCch----hHHHHHHHHHHHHHhhHHHhccccccCCc
Confidence 4679999999999 99999999999999999999754 68999999999999999999999999863
No 46
>COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=2e-18 Score=118.80 Aligned_cols=68 Identities=40% Similarity=0.540 Sum_probs=64.3
Q ss_pred CCCCcchhhccCCCCCHHHHHHHHHHHHHHhCCCCCCCchH-HHHHHHHHHHHHHHhhChhhHHHHHhc
Q 034178 32 KPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDC-ATSRFQEINEAYQEKNGSLILMVKIKF 99 (102)
Q Consensus 32 ~~~~~y~vLgl~~~as~~eIk~ayr~l~~~~HPD~~~~~~~-a~~~f~~i~~Ay~~L~d~~~r~~~~~f 99 (102)
...++|+||||+++++..+|+++||++++++|||+++.... +.+.|+.|++||++|+|+..|..||++
T Consensus 4 ~~~~~y~iLgv~~~as~~eik~ayrkla~~~HPD~~~~~~~~a~~~f~~i~~Ay~vLsd~~~r~~yd~~ 72 (237)
T COG2214 4 DLLDYYEILGVPPNASLEEIKKAYRKLALKYHPDRNPGDPKVAEEKFKEINEAYEILSDPERRAEYDKI 72 (237)
T ss_pred hhhhHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhhCHHHHHHhhhh
Confidence 45699999999999999999999999999999999998764 899999999999999999999999987
No 47
>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.
Probab=99.75 E-value=3.5e-18 Score=137.60 Aligned_cols=67 Identities=39% Similarity=0.576 Sum_probs=63.2
Q ss_pred CCcchhhccCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhChhhHHHHHhcCC
Q 034178 34 KDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQEKNGSLILMVKIKFNQ 101 (102)
Q Consensus 34 ~~~y~vLgl~~~as~~eIk~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~~~~f~~ 101 (102)
.|||+||||+++|+.++||++||+|++++|||++++ ..+.++|+.|++||++|+||.+|..||.||.
T Consensus 2 ~DYYeVLGVs~dAS~eEIKKAYRKLAKKyHPDKn~~-~eAeekFqeINEAYEVLSDP~KRa~YD~fG~ 68 (871)
T TIGR03835 2 RDYYEVLGIDRDADEQEIKKAFRKLAKKYHPDRNKA-PDAASIFAEINEANDVLSNPKKRANYDKYGH 68 (871)
T ss_pred CChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-hhHHHHHHHHHHHHHHhCCHHHHHHHhhhcc
Confidence 589999999999999999999999999999999987 4488899999999999999999999999984
No 48
>PRK05014 hscB co-chaperone HscB; Provisional
Probab=99.71 E-value=3.6e-17 Score=112.73 Aligned_cols=64 Identities=25% Similarity=0.387 Sum_probs=56.9
Q ss_pred CCcchhhccCCC--CCHHHHHHHHHHHHHHhCCCCCCCch-----HHHHHHHHHHHHHHHhhChhhHHHHH
Q 034178 34 KDYYKILEVDYD--ATEEEIRSNYIRLALKWHPDKQKDRD-----CATSRFQEINEAYQEKNGSLILMVKI 97 (102)
Q Consensus 34 ~~~y~vLgl~~~--as~~eIk~ayr~l~~~~HPD~~~~~~-----~a~~~f~~i~~Ay~~L~d~~~r~~~~ 97 (102)
.|||+||||++. ++..+|+++||++++++|||+..+.. .+.+.|..||+||++|+||..|..|.
T Consensus 1 ~~yf~llgl~~~~~~d~~~L~~~yr~l~~~~HPDk~~~~~~~~~~~a~~~s~~iN~AY~~L~dp~~Ra~Yl 71 (171)
T PRK05014 1 MDYFTLFGLPARYDIDTQLLASRYQELQRQFHPDKFANASERERLLAVQQAATINDAYQTLKHPLKRAEYL 71 (171)
T ss_pred CCHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHCChhHHHHHH
Confidence 389999999996 68899999999999999999976542 25678999999999999999999985
No 49
>PRK01356 hscB co-chaperone HscB; Provisional
Probab=99.70 E-value=4.7e-17 Score=111.70 Aligned_cols=64 Identities=22% Similarity=0.401 Sum_probs=56.5
Q ss_pred CCcchhhccCCC--CCHHHHHHHHHHHHHHhCCCCCCCch---HHHHHHHHHHHHHHHhhChhhHHHHH
Q 034178 34 KDYYKILEVDYD--ATEEEIRSNYIRLALKWHPDKQKDRD---CATSRFQEINEAYQEKNGSLILMVKI 97 (102)
Q Consensus 34 ~~~y~vLgl~~~--as~~eIk~ayr~l~~~~HPD~~~~~~---~a~~~f~~i~~Ay~~L~d~~~r~~~~ 97 (102)
.|||+||||++. ++..+|+++|+++++++|||+..+.. .+.+.+..|++||++|+||.+|+.|.
T Consensus 2 ~~yf~llgl~~~f~id~~~L~~aYr~lq~~~HPDk~~~~~~k~~~~~~s~~in~AY~~L~dp~~Ra~Yl 70 (166)
T PRK01356 2 QNYFQLLGLPQEYNIDLKILEKQYFAMQVKYHPDKAKTLQEKEQNLIIASELNNAYSTLKDALKRAEYM 70 (166)
T ss_pred CCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 589999999996 78999999999999999999987642 24456889999999999999999985
No 50
>PRK00294 hscB co-chaperone HscB; Provisional
Probab=99.70 E-value=8.9e-17 Score=110.99 Aligned_cols=66 Identities=21% Similarity=0.279 Sum_probs=59.1
Q ss_pred CCCCcchhhccCCC--CCHHHHHHHHHHHHHHhCCCCCCCch-----HHHHHHHHHHHHHHHhhChhhHHHHH
Q 034178 32 KPKDYYKILEVDYD--ATEEEIRSNYIRLALKWHPDKQKDRD-----CATSRFQEINEAYQEKNGSLILMVKI 97 (102)
Q Consensus 32 ~~~~~y~vLgl~~~--as~~eIk~ayr~l~~~~HPD~~~~~~-----~a~~~f~~i~~Ay~~L~d~~~r~~~~ 97 (102)
...|||++|||+++ .+..+|+++||++++++|||+..+.. .+.+.+..||+||++|+||.+|..|+
T Consensus 2 ~~~~~F~l~~l~~~f~id~~~L~~~Yr~Lq~~~HPDk~~~~~~~e~~~a~~~s~~IN~AY~~L~~p~~Ra~Yl 74 (173)
T PRK00294 2 GTPCHFALFDLQPSFRLDLDQLATRYRELAREVHPDRFADAPEREQRLALERSASLNEAYQTLKSPPRRARYL 74 (173)
T ss_pred CCCChhhhcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhCChhhhHHHH
Confidence 56799999999996 67899999999999999999987643 26678999999999999999999886
No 51
>PRK03578 hscB co-chaperone HscB; Provisional
Probab=99.68 E-value=2e-16 Score=109.48 Aligned_cols=65 Identities=20% Similarity=0.251 Sum_probs=57.0
Q ss_pred CCCcchhhccCCC--CCHHHHHHHHHHHHHHhCCCCCCCchH-----HHHHHHHHHHHHHHhhChhhHHHHH
Q 034178 33 PKDYYKILEVDYD--ATEEEIRSNYIRLALKWHPDKQKDRDC-----ATSRFQEINEAYQEKNGSLILMVKI 97 (102)
Q Consensus 33 ~~~~y~vLgl~~~--as~~eIk~ayr~l~~~~HPD~~~~~~~-----a~~~f~~i~~Ay~~L~d~~~r~~~~ 97 (102)
..|||+||||++. ++..+|+++|+++++++|||++..... +.+.+..||+||++|+||.+|..|.
T Consensus 5 ~~dyf~llglp~~f~~d~~~L~~~yr~lq~~~HPD~~~~~~~~e~~~a~~~s~~iN~AY~tL~~p~~Ra~Yl 76 (176)
T PRK03578 5 KDDHFSLFGLPARFALDEAALDAAYRTVQAQVHPDRFAAAGDAEKRVAMQWATRANEAYQTLRDPLKRARYL 76 (176)
T ss_pred CCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhCChhhHHHHH
Confidence 4699999999995 689999999999999999999876432 4455789999999999999999986
No 52
>PTZ00100 DnaJ chaperone protein; Provisional
Probab=99.62 E-value=8e-16 Score=99.90 Aligned_cols=57 Identities=30% Similarity=0.324 Sum_probs=50.4
Q ss_pred hhhcCCCCcchhhccCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhh
Q 034178 28 SLLAKPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQEKN 88 (102)
Q Consensus 28 ~~~~~~~~~y~vLgl~~~as~~eIk~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~ 88 (102)
+..+...++|+||||++++|.++|+++||++++++|||+.+ +.+.|++|++||++|.
T Consensus 59 ~~~Ms~~eAy~ILGv~~~As~~eIkkaYRrLa~~~HPDkgG----s~~~~~kIneAyevL~ 115 (116)
T PTZ00100 59 ENPMSKSEAYKILNISPTASKERIREAHKQLMLRNHPDNGG----STYIASKVNEAKDLLL 115 (116)
T ss_pred cCCCCHHHHHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCC----CHHHHHHHHHHHHHHh
Confidence 34455679999999999999999999999999999999964 3678999999999995
No 53
>KOG0720 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.61 E-value=1.2e-15 Score=117.05 Aligned_cols=68 Identities=22% Similarity=0.264 Sum_probs=63.5
Q ss_pred hcCCCCcchhhccCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhChhhHHHHHh
Q 034178 30 LAKPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQEKNGSLILMVKIK 98 (102)
Q Consensus 30 ~~~~~~~y~vLgl~~~as~~eIk~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~~~~ 98 (102)
..+..|+|.+|||+++++.++||+.||++|...||||+.. +.|.|.|+.|+.||++|+|+.+|..||.
T Consensus 231 e~~~~daYsvlGl~~d~sd~~lKk~Yrk~A~LVhPDKn~~-~~A~Eafk~Lq~Afevig~~~kR~eYd~ 298 (490)
T KOG0720|consen 231 ELNILDAYSALGLPSDCSDADLKKNYRKKAMLVHPDKNMI-PRAEEAFKKLQVAFEVIGDSVKRKEYDL 298 (490)
T ss_pred hhcCCCchhhcCCCCCCCHHHHHHHHHhhceEeCCCccCC-hhHHHHHHHHHHHHHHhcchhhhhHHHH
Confidence 3458899999999999999999999999999999999995 5599999999999999999999999985
No 54
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=99.59 E-value=2.2e-15 Score=110.10 Aligned_cols=60 Identities=32% Similarity=0.489 Sum_probs=53.3
Q ss_pred cCCCCcchhhccCCCCCHHHHHHHHHHHHHHhCCCCCCCc-------hHHHHHHHHHHHHHHHhhCh
Q 034178 31 AKPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDR-------DCATSRFQEINEAYQEKNGS 90 (102)
Q Consensus 31 ~~~~~~y~vLgl~~~as~~eIk~ayr~l~~~~HPD~~~~~-------~~a~~~f~~i~~Ay~~L~d~ 90 (102)
....++|+||||++++|.++||++||+|++++|||+..++ +.++++|++|++||++|+..
T Consensus 197 ~~~~~ay~vLgv~~~as~~eIk~aYr~L~~~~HPDk~~~~g~~~~~~~~a~ek~~~I~~AYe~L~~~ 263 (267)
T PRK09430 197 PTLEDAYKVLGVSESDDDQEIKRAYRKLMSEHHPDKLVAKGLPPEMMEMAKEKAQEIQAAYELIKKQ 263 (267)
T ss_pred CcHHhHHHHcCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHh
Confidence 4557999999999999999999999999999999996531 34889999999999999874
No 55
>KOG0714 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.56 E-value=3.8e-15 Score=106.79 Aligned_cols=69 Identities=39% Similarity=0.661 Sum_probs=62.7
Q ss_pred CCCcchhhccCCCCCHHHHHHHHHHHHHHhCCCCCCCc-hHHHHHHHHHHHHHHHhhChhhHHHHHhcCC
Q 034178 33 PKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDR-DCATSRFQEINEAYQEKNGSLILMVKIKFNQ 101 (102)
Q Consensus 33 ~~~~y~vLgl~~~as~~eIk~ayr~l~~~~HPD~~~~~-~~a~~~f~~i~~Ay~~L~d~~~r~~~~~f~~ 101 (102)
..++|+||||.+.|+.++|++||+++++.+|||+++.. ..+..+|.+|.+||++|+|+..|.+||+||+
T Consensus 2 ~~d~~~~l~i~~~as~~~i~ka~~~~a~~~hpdk~~~~~~~~~~~~~~~~ea~~~ls~~~kr~~~d~~~~ 71 (306)
T KOG0714|consen 2 GKDYYKILGIARSASEEDIKKAYRKLALKYHPDKNPSPKEVAEAKFKEIAEAYEVLSDPKKRKIYDQYGE 71 (306)
T ss_pred cccHHHHhCccccccHHHHHHHHHHHHHhhCCCCCCCchhhHHHHHhhhhccccccCCHHHhhhccccCc
Confidence 46899999999999999999999999999999998776 2355689999999999999999999999984
No 56
>KOG0722 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.55 E-value=3.3e-15 Score=108.21 Aligned_cols=66 Identities=26% Similarity=0.410 Sum_probs=62.3
Q ss_pred cCCCCcchhhccCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhChhhHHHHH
Q 034178 31 AKPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQEKNGSLILMVKI 97 (102)
Q Consensus 31 ~~~~~~y~vLgl~~~as~~eIk~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~~~ 97 (102)
....|.|+||||++.++..+|.+|||+|++++|||++++++ +.+.|..|-.||++|.|+..|.-||
T Consensus 30 CG~enCYdVLgV~Rea~KseIakAYRqLARrhHPDr~r~~e-~k~~F~~iAtayeilkd~e~rt~yd 95 (329)
T KOG0722|consen 30 CGAENCYDVLGVAREANKSEIAKAYRQLARRHHPDRNRDPE-SKKLFVKIATAYEILKDNETRTQYD 95 (329)
T ss_pred ccchhHHHHhhhhhhccHHHHHHHHHHHHHHhCCcccCCch-hhhhhhhhhcccccccchhhHHhHH
Confidence 56789999999999999999999999999999999999987 6799999999999999999998876
No 57
>PHA02624 large T antigen; Provisional
Probab=99.54 E-value=7.7e-15 Score=116.72 Aligned_cols=60 Identities=22% Similarity=0.418 Sum_probs=55.9
Q ss_pred CCCcchhhccCCCC--CHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhChhhHHHH
Q 034178 33 PKDYYKILEVDYDA--TEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQEKNGSLILMVK 96 (102)
Q Consensus 33 ~~~~y~vLgl~~~a--s~~eIk~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~~ 96 (102)
..++|+||||+++| +.++||+|||++++++|||++++ .+.|++|++||++|+|+..|..|
T Consensus 10 ~~elyelLGL~~~A~gs~~eIKkAYRkLAkkyHPDKgGd----eekfk~Ln~AYevL~d~~k~~r~ 71 (647)
T PHA02624 10 SKELMDLLGLPMAAWGNLPLMRKAYLRKCKEYHPDKGGD----EEKMKRLNSLYKKLQEGVKSARQ 71 (647)
T ss_pred HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCc----HHHHHHHHHHHHHHhcHHHhhhc
Confidence 45899999999999 99999999999999999999753 68999999999999999999887
No 58
>PRK01773 hscB co-chaperone HscB; Provisional
Probab=99.51 E-value=6.2e-14 Score=96.86 Aligned_cols=64 Identities=19% Similarity=0.345 Sum_probs=57.1
Q ss_pred CCcchhhccCCC--CCHHHHHHHHHHHHHHhCCCCCCCch-----HHHHHHHHHHHHHHHhhChhhHHHHH
Q 034178 34 KDYYKILEVDYD--ATEEEIRSNYIRLALKWHPDKQKDRD-----CATSRFQEINEAYQEKNGSLILMVKI 97 (102)
Q Consensus 34 ~~~y~vLgl~~~--as~~eIk~ayr~l~~~~HPD~~~~~~-----~a~~~f~~i~~Ay~~L~d~~~r~~~~ 97 (102)
.|||++|||++. .+...++++|+++.+.+|||+..+.. .+.+....||+||.+|+||.+|+.|-
T Consensus 2 ~nyF~lf~lp~~F~iD~~~L~~~y~~Lq~~~HPD~f~~~~~~eq~~a~~~ss~iN~AY~tLkdPl~RA~YL 72 (173)
T PRK01773 2 NNPFALFDLPVDFQLDNALLSERYLALQKSLHPDNFANSSAQEQRLAMQKSAEVNDALQILKDPILRAEAI 72 (173)
T ss_pred CChHHhcCCCCCCCCCHHHHHHHHHHHHHHhCcCcccCCCHHHHHHHHHHHHHHHHHHHHHCChHHHHHHH
Confidence 489999999996 89999999999999999999987652 36677899999999999999999874
No 59
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.50 E-value=2.9e-14 Score=107.59 Aligned_cols=71 Identities=32% Similarity=0.447 Sum_probs=64.0
Q ss_pred hhcCCCCcchhhccCCCCCHHHHHHHHHHHHHHhCCCCCCCch---HHHHHHHHHHHHHHHhhChhhHHHHHhc
Q 034178 29 LLAKPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRD---CATSRFQEINEAYQEKNGSLILMVKIKF 99 (102)
Q Consensus 29 ~~~~~~~~y~vLgl~~~as~~eIk~ayr~l~~~~HPD~~~~~~---~a~~~f~~i~~Ay~~L~d~~~r~~~~~f 99 (102)
.....+|||+||||.++|+..||.+|||+++.+||||...+.+ .|+.+|.-|-.|-+||+||..|.-+|+-
T Consensus 389 kqs~kRDYYKILGVkRnAsKqEI~KAYRKlAqkWHPDNFqdEeEKKkAEKKFIDIAAAKEVLsd~EkRrqFDnG 462 (504)
T KOG0624|consen 389 KQSGKRDYYKILGVKRNASKQEITKAYRKLAQKWHPDNFQDEEEKKKAEKKFIDIAAAKEVLSDPEKRRQFDNG 462 (504)
T ss_pred HHhccchHHHHhhhcccccHHHHHHHHHHHHHhcCCccccCHHHHHHHHHhhhhHHHHHHhhcCHHHHhhccCC
Confidence 4567889999999999999999999999999999999998753 4889999999999999999999876653
No 60
>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]
Probab=99.45 E-value=1.2e-13 Score=106.44 Aligned_cols=70 Identities=27% Similarity=0.459 Sum_probs=64.8
Q ss_pred cCCCCcchhhccCCCCCHHHHHHHHHHHHHHhCCCCCCC-----chHHHHHHHHHHHHHHHhhChhhHHHHHhcC
Q 034178 31 AKPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKD-----RDCATSRFQEINEAYQEKNGSLILMVKIKFN 100 (102)
Q Consensus 31 ~~~~~~y~vLgl~~~as~~eIk~ayr~l~~~~HPD~~~~-----~~~a~~~f~~i~~Ay~~L~d~~~r~~~~~f~ 100 (102)
...-|+|+||||+.+++..+||++||+|+.++||||.+. +++.++.+..|++||..|+|...|..|-.||
T Consensus 95 ~~~fDPyEILGI~~~ts~rdik~~yr~Ls~KfhpdK~~~mvn~~rse~Ee~y~~ItkAY~~lTd~k~renyl~yG 169 (610)
T COG5407 95 RRGFDPYEILGIDQDTSERDIKKRYRMLSMKFHPDKAPPMVNELRSEYEEKYKTITKAYGLLTDKKRRENYLNYG 169 (610)
T ss_pred HcCCChHHhhcccCCCcHHHHHHHHHhheeecChhhcCCCChhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcC
Confidence 356699999999999999999999999999999999876 3568899999999999999999999999987
No 61
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.43 E-value=1.2e-13 Score=105.54 Aligned_cols=70 Identities=34% Similarity=0.530 Sum_probs=64.7
Q ss_pred hhcCCCCcchhhccCCCCCHHHHHHHHHHHHHHhCCCCCCCc-hHHHHHHHHHHHHHHHhhChhhHHHHHh
Q 034178 29 LLAKPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDR-DCATSRFQEINEAYQEKNGSLILMVKIK 98 (102)
Q Consensus 29 ~~~~~~~~y~vLgl~~~as~~eIk~ayr~l~~~~HPD~~~~~-~~a~~~f~~i~~Ay~~L~d~~~r~~~~~ 98 (102)
..++.++||.|||+...++..+||++||++++.+|||++.+. .+++..|+++-+||.+|+||.+|.-+|.
T Consensus 368 kkSkRkd~ykilGi~~~as~~eikkayrk~AL~~Hpd~~agsq~eaE~kFkevgeAy~il~d~~kr~r~ds 438 (486)
T KOG0550|consen 368 KKSKRKDWYKILGISRNASDDEIKKAYRKLALVHHPDKNAGSQKEAEAKFKEVGEAYTILSDPMKRVRFDS 438 (486)
T ss_pred HHhhhhhHHHHhhhhhhcccchhhhHHHHHHHHhCCCcCcchhHHHHHHHHHHHHHHHHhcCHHHHhhccc
Confidence 446789999999999999999999999999999999999887 6689999999999999999999987764
No 62
>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB. This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock.
Probab=99.34 E-value=3.4e-12 Score=86.93 Aligned_cols=52 Identities=23% Similarity=0.335 Sum_probs=45.7
Q ss_pred CCHHHHHHHHHHHHHHhCCCCCCCc-----hHHHHHHHHHHHHHHHhhChhhHHHHH
Q 034178 46 ATEEEIRSNYIRLALKWHPDKQKDR-----DCATSRFQEINEAYQEKNGSLILMVKI 97 (102)
Q Consensus 46 as~~eIk~ayr~l~~~~HPD~~~~~-----~~a~~~f~~i~~Ay~~L~d~~~r~~~~ 97 (102)
.+..+|+++|+++++++|||+..+. ..+.+.+..||+||++|+||.+|..|.
T Consensus 3 iD~~~L~~~yr~lq~~~HPD~~~~~~~~~~~~a~~~s~~iN~AY~~L~~p~~Ra~yl 59 (157)
T TIGR00714 3 LDTQALSLRYQDLQRQYHPDKFASGSAQEQLAAVQQSTTLNQAYQTLKDPLMRAEYM 59 (157)
T ss_pred CCHHHHHHHHHHHHHHHCcCCCCCCChhhhHHHHHHHHHHHHHHHHhCChhhhHHHH
Confidence 4778999999999999999996553 236788999999999999999999886
No 63
>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.33 E-value=3e-12 Score=90.07 Aligned_cols=62 Identities=27% Similarity=0.507 Sum_probs=57.4
Q ss_pred CCCcchhhccCCCCCHHHHHHHHHHHHHHhCCCCCCCc-hHHHHHHHHHHHHHHHhhChhhHH
Q 034178 33 PKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDR-DCATSRFQEINEAYQEKNGSLILM 94 (102)
Q Consensus 33 ~~~~y~vLgl~~~as~~eIk~ayr~l~~~~HPD~~~~~-~~a~~~f~~i~~Ay~~L~d~~~r~ 94 (102)
..|+|+||.|.|..+.++||+.||+|+...|||+|++. +.|...|.-|..||..|-|+..|.
T Consensus 52 nLNpfeVLqIdpev~~edikkryRklSilVHPDKN~Dd~~rAqkAFdivkKA~k~l~n~~~rk 114 (250)
T KOG1150|consen 52 NLNPFEVLQIDPEVTDEDIKKRYRKLSILVHPDKNPDDAERAQKAFDIVKKAYKLLENDKIRK 114 (250)
T ss_pred ccChHHHHhcCCCCCHHHHHHHHHhhheeecCCCCcccHHHHHHHHHHHHHHHHHHhCHHHHH
Confidence 46999999999999999999999999999999999987 669999999999999999998543
No 64
>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]
Probab=98.96 E-value=7.6e-10 Score=81.27 Aligned_cols=67 Identities=21% Similarity=0.244 Sum_probs=57.4
Q ss_pred CCCCcchhhccCC---CCCHHHHHHHHHHHHHHhCCCCCCC--chHHHHHHHHHHHHHHHhhChhhHHHHHh
Q 034178 32 KPKDYYKILEVDY---DATEEEIRSNYIRLALKWHPDKQKD--RDCATSRFQEINEAYQEKNGSLILMVKIK 98 (102)
Q Consensus 32 ~~~~~y~vLgl~~---~as~~eIk~ayr~l~~~~HPD~~~~--~~~a~~~f~~i~~Ay~~L~d~~~r~~~~~ 98 (102)
+..|+|.+|||+. .++..+|.++.++.+.+||||+... .-...+.|..|+.||++|+|+..|.-||.
T Consensus 41 k~~DlYa~lgLskyR~ka~~~qi~kah~kkv~kyHPDk~aa~g~~~~d~fFk~iqkA~evL~D~~~R~qyDS 112 (379)
T COG5269 41 KKVDLYALLGLSKYRTKAIPPQILKAHKKKVYKYHPDKTAAGGNKGCDEFFKLIQKAREVLGDRKLRLQYDS 112 (379)
T ss_pred hhhhHHHHhchHhhhcCCCcHHHHHHHHHHHHHhCccchhccCCCCcHHHHHHHHHHHHHhccHHHHhhccc
Confidence 3468999999996 5788999999999999999999622 22378999999999999999999988874
No 65
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=98.85 E-value=4.2e-09 Score=88.34 Aligned_cols=57 Identities=32% Similarity=0.511 Sum_probs=49.8
Q ss_pred hcCCCCcchhhccCC----CCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhC
Q 034178 30 LAKPKDYYKILEVDY----DATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQEKNG 89 (102)
Q Consensus 30 ~~~~~~~y~vLgl~~----~as~~eIk~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d 89 (102)
.+...+.|+||.|+- ....+.||++|++|+.+||||||+. ..++|..+++||+.|+.
T Consensus 1277 ~mS~d~A~eiL~i~l~n~~hD~~~KirrqY~kLA~kYHPDKNPE---GRemFe~VnKAYE~L~~ 1337 (2235)
T KOG1789|consen 1277 TMSVDLAREILSVDLTNEEHDKPAKIRRQYYKLAAKYHPDKNPE---GREMFERVNKAYELLSS 1337 (2235)
T ss_pred ccchHHHHHHhccccCCCCcccHHHHHHHHHHHHHHhCCCCCch---HHHHHHHHHHHHHHHHH
Confidence 456678999999985 3456899999999999999999987 67999999999999983
No 66
>KOG0568 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.76 E-value=1.7e-08 Score=72.91 Aligned_cols=58 Identities=29% Similarity=0.519 Sum_probs=50.8
Q ss_pred CCCCcchhhccCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHH-HhhCh
Q 034178 32 KPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQ-EKNGS 90 (102)
Q Consensus 32 ~~~~~y~vLgl~~~as~~eIk~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~-~L~d~ 90 (102)
+...+|.||||..+++.++++.+|..|++++|||...+.. ..+.|.+|.+||. +|+..
T Consensus 45 ~~~e~fril~v~e~~~adevr~af~~lakq~hpdsgs~~a-daa~f~qideafrkvlq~~ 103 (342)
T KOG0568|consen 45 KIMECFRILGVEEGADADEVREAFHDLAKQVHPDSGSEEA-DAARFIQIDEAFRKVLQEK 103 (342)
T ss_pred HHHHHHHHhcccccCchhHHHHHHHHHHHHcCCCCCCccc-cHHHHHHHHHHHHHHHHHH
Confidence 4458999999999999999999999999999999987643 6789999999998 66543
No 67
>KOG0723 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.75 E-value=1.5e-08 Score=64.69 Aligned_cols=60 Identities=23% Similarity=0.253 Sum_probs=50.7
Q ss_pred hhhhcCCCCcchhhccCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhCh
Q 034178 27 LSLLAKPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQEKNGS 90 (102)
Q Consensus 27 ~~~~~~~~~~y~vLgl~~~as~~eIk~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~ 90 (102)
+...+.....-.||||+++++.+.||.++|++....|||+.+++- .-.+||+|+++|...
T Consensus 49 F~~kMsr~EA~lIL~v~~s~~k~KikeaHrriM~~NHPD~GGSPY----lAsKINEAKdlLe~~ 108 (112)
T KOG0723|consen 49 FEPKMSRREAALILGVTPSLDKDKIKEAHRRIMLANHPDRGGSPY----LASKINEAKDLLEGT 108 (112)
T ss_pred cccccchHHHHHHhCCCccccHHHHHHHHHHHHHcCCCcCCCCHH----HHHHHHHHHHHHhcc
Confidence 344456667778999999999999999999999999999999864 344899999999764
No 68
>KOG3192 consensus Mitochondrial J-type chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=98.53 E-value=2e-07 Score=63.27 Aligned_cols=68 Identities=21% Similarity=0.456 Sum_probs=56.7
Q ss_pred hcCCCCcchhhccCC--CCCHHHHHHHHHHHHHHhCCCCCCCc-----hHHHHHHHHHHHHHHHhhChhhHHHHH
Q 034178 30 LAKPKDYYKILEVDY--DATEEEIRSNYIRLALKWHPDKQKDR-----DCATSRFQEINEAYQEKNGSLILMVKI 97 (102)
Q Consensus 30 ~~~~~~~y~vLgl~~--~as~~eIk~ayr~l~~~~HPD~~~~~-----~~a~~~f~~i~~Ay~~L~d~~~r~~~~ 97 (102)
+....+||.++|... ...+..++.-|...+++.|||+...+ ..|.+....|++||.+|.||..|+-|.
T Consensus 4 ~~~~~~ff~~Fg~e~~~~~~p~~l~~~~~~~skkL~~d~~~~~~~~~~d~a~eqSa~lnkAY~TLk~pL~RA~Yi 78 (168)
T KOG3192|consen 4 MGSPSRFFDIFGMELSFKIDPDKLKEKYTDISKKLHPDRPGLSFAGDTDQASEQSAELNKAYDTLKDPLARARYL 78 (168)
T ss_pred cchHHHHHHHhccccCCCCCcchhhHHHHHHHHhhCcccccccccccchhHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 456679999998765 45677777799999999999995543 357888999999999999999999886
No 69
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=97.82 E-value=1.4e-05 Score=55.16 Aligned_cols=54 Identities=33% Similarity=0.580 Sum_probs=47.9
Q ss_pred CCcchhhccCCCCCHHHHHHHHHHHHHHhCCCCCCCc-------hHHHHHHHHHHHHHHHh
Q 034178 34 KDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDR-------DCATSRFQEINEAYQEK 87 (102)
Q Consensus 34 ~~~y~vLgl~~~as~~eIk~ayr~l~~~~HPD~~~~~-------~~a~~~f~~i~~Ay~~L 87 (102)
.+.|.+||+....+..+|+++|+++....|||+.... +.+.+.+++|++||+.+
T Consensus 113 ~~~l~~l~~~~~~~~~~i~~~~r~l~~e~~~d~a~~~~~~~e~~~~~~~~~~~i~~a~~~~ 173 (174)
T COG1076 113 EDALKVLGVEIKADQDAIKKAYRKLLSEQHPDKAAAKGLKLEFIEKLKEKLQEIQEAYEDI 173 (174)
T ss_pred hhHHHHhcCchhhhHHHHHHHHHHHHHhcCHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhc
Confidence 6899999999999999999999999999999996543 35788899999999864
No 70
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=97.63 E-value=5.9e-05 Score=51.98 Aligned_cols=63 Identities=21% Similarity=0.322 Sum_probs=50.4
Q ss_pred CcchhhccCCC--CCHHHHHHHHHHHHHHhCCCCCCCchH-----HHHHHHHHHHHHHHhhChhhHHHHH
Q 034178 35 DYYKILEVDYD--ATEEEIRSNYIRLALKWHPDKQKDRDC-----ATSRFQEINEAYQEKNGSLILMVKI 97 (102)
Q Consensus 35 ~~y~vLgl~~~--as~~eIk~ayr~l~~~~HPD~~~~~~~-----a~~~f~~i~~Ay~~L~d~~~r~~~~ 97 (102)
+++..+|+.+. ...+.++..|+.+.+.+|||+...... +.+.+..++.||.+|.+|..|..|-
T Consensus 2 ~~~~~~~~~~~f~~~~~~l~~~~~~~~~~~~~dr~~~~~~~~~~~~l~~~~~~~~a~~tLk~~l~ra~~~ 71 (174)
T COG1076 2 DGFVLFGLPRAFQIDLDALKLQYRELQRAYHPDRFGKASEAEQRKALQQSAEVNPAYQTLKDPLLRAEYL 71 (174)
T ss_pred CcccccccHHHHHHHHhHhhhhHHHHHHhhCcccccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 35556666664 356678999999999999999887532 5568999999999999999999874
No 71
>KOG0431 consensus Auxilin-like protein and related proteins containing DnaJ domain [General function prediction only]
Probab=97.50 E-value=0.00019 Score=56.36 Aligned_cols=49 Identities=24% Similarity=0.413 Sum_probs=37.1
Q ss_pred hccCCCCCHHHHHHHHHHHHHHhCCCCCCCch-------HHHHHHHHHHHHHHHhh
Q 034178 40 LEVDYDATEEEIRSNYIRLALKWHPDKQKDRD-------CATSRFQEINEAYQEKN 88 (102)
Q Consensus 40 Lgl~~~as~~eIk~ayr~l~~~~HPD~~~~~~-------~a~~~f~~i~~Ay~~L~ 88 (102)
.++..-.+...||++||+.++..||||.+... .+++.|-.+++|++...
T Consensus 394 VsltDLVtp~~VKKaYrKA~L~VHPDKlqq~gas~~qK~Iaekvfd~l~eawn~f~ 449 (453)
T KOG0431|consen 394 VSLTDLVTPAQVKKAYRKAVLCVHPDKLQQKGASLEQKYIAEKVFDALSEAWNKFN 449 (453)
T ss_pred CchhhccCHHHHHHHHHhhhheeCcccccCCcccHHHHHHHHHHHHHHHHHHHhhh
Confidence 34445578999999999999999999988762 35666666777766543
No 72
>PF03656 Pam16: Pam16; InterPro: IPR005341 The Pam16 protein is the fifth essential subunit of the pre-sequence translocase-associated protein import motor (PAM) []. In Saccharomyces cerevisiae (Baker's yeast), Pam16 is required for preprotein translocation into the matrix, but not for protein insertion into the inner membrane [].; PDB: 2GUZ_J.
Probab=97.15 E-value=0.0018 Score=42.80 Aligned_cols=59 Identities=20% Similarity=0.165 Sum_probs=42.8
Q ss_pred cCCCCcchhhccCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhChhhH
Q 034178 31 AKPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQEKNGSLIL 93 (102)
Q Consensus 31 ~~~~~~y~vLgl~~~as~~eIk~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r 93 (102)
+.......||||++..+.++|.+.|.+|-...+|++.++ .-.-.+|..|.+.|..+...
T Consensus 55 Mtl~EA~~ILnv~~~~~~eeI~k~y~~Lf~~Nd~~kGGS----fYLQSKV~rAKErl~~El~~ 113 (127)
T PF03656_consen 55 MTLDEARQILNVKEELSREEIQKRYKHLFKANDPSKGGS----FYLQSKVFRAKERLEQELKE 113 (127)
T ss_dssp --HHHHHHHHT--G--SHHHHHHHHHHHHHHT-CCCTS-----HHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHcCCCCccCHHHHHHHHHHHHhccCCCcCCC----HHHHHHHHHHHHHHHHHHHH
Confidence 445577899999999999999999999999999998875 56666888888888766533
No 73
>PF13446 RPT: A repeated domain in UCH-protein
Probab=94.47 E-value=0.084 Score=30.15 Aligned_cols=47 Identities=26% Similarity=0.294 Sum_probs=34.1
Q ss_pred CCCcchhhccCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhCh
Q 034178 33 PKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQEKNGS 90 (102)
Q Consensus 33 ~~~~y~vLgl~~~as~~eIk~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~ 90 (102)
....|++|||+++.+.+.|-.+|+.... -.| .....+.+|..++.+.
T Consensus 4 ~~~Ay~~Lgi~~~~~Dd~Ii~~f~~~~~-~~P----------~~~~~~r~AL~~Ia~~ 50 (62)
T PF13446_consen 4 VEEAYEILGIDEDTDDDFIISAFQSKVN-DDP----------SQKDTLREALRVIAES 50 (62)
T ss_pred HHHHHHHhCcCCCCCHHHHHHHHHHHHH-cCh----------HhHHHHHHHHHHHHHH
Confidence 3468999999999999999999999887 112 2333555666666554
No 74
>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.
Probab=91.78 E-value=0.75 Score=32.42 Aligned_cols=41 Identities=24% Similarity=0.213 Sum_probs=31.9
Q ss_pred CCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhChh
Q 034178 43 DYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQEKNGSL 91 (102)
Q Consensus 43 ~~~as~~eIk~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~ 91 (102)
+++|+.+||.+|+.++..+|- + ..+.-..|..||+.+.=..
T Consensus 1 S~~ASfeEIq~Arn~ll~~y~-----g---d~~~~~~IEaAYD~ILM~r 41 (194)
T PF11833_consen 1 SEDASFEEIQAARNRLLAQYA-----G---DEKSREAIEAAYDAILMER 41 (194)
T ss_pred CCCCCHHHHHHHHHHHHHHhc-----C---CHHHHHHHHHHHHHHHHHH
Confidence 478999999999999999982 2 1455668999999865443
No 75
>PF14687 DUF4460: Domain of unknown function (DUF4460)
Probab=90.82 E-value=0.93 Score=29.24 Aligned_cols=46 Identities=13% Similarity=0.194 Sum_probs=35.0
Q ss_pred CCCHHHHHHHHHHHHHHhCCCCCCCch----HHHHHHHHHHHHHHHhhCh
Q 034178 45 DATEEEIRSNYIRLALKWHPDKQKDRD----CATSRFQEINEAYQEKNGS 90 (102)
Q Consensus 45 ~as~~eIk~ayr~l~~~~HPD~~~~~~----~a~~~f~~i~~Ay~~L~d~ 90 (102)
..+..+++.+.|.+-+..|||..+..+ ..++-++.|+.--+.|..+
T Consensus 5 ~~~~~~l~~aLr~Fy~~VHPDlF~~~P~~k~~Ne~SLk~Ln~~Ld~l~~~ 54 (112)
T PF14687_consen 5 NLSSPDLRSALRPFYFAVHPDLFGQHPEEKQVNEESLKLLNSYLDSLKKR 54 (112)
T ss_pred hhhhHHHHHHHHHHHHHhCCcccccChHHHHhhHHHHHHHHHHHHHHhcc
Confidence 456788999999999999999876642 2455577777777777664
No 76
>KOG3442 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.15 E-value=1.8 Score=28.61 Aligned_cols=59 Identities=20% Similarity=0.152 Sum_probs=41.7
Q ss_pred CCcchhhccCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhChhhHHHH
Q 034178 34 KDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQEKNGSLILMVK 96 (102)
Q Consensus 34 ~~~y~vLgl~~~as~~eIk~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~~ 96 (102)
...-.||+|++..+.++|.+.|-.|-...-+.+.+. .-.-.+|..|-+-|.....+.+.
T Consensus 59 qEa~qILnV~~~ln~eei~k~yehLFevNdkskGGS----FYLQSKVfRAkErld~El~~e~~ 117 (132)
T KOG3442|consen 59 QEAQQILNVKEPLNREEIEKRYEHLFEVNDKSKGGS----FYLQSKVFRAKERLDEELKIELK 117 (132)
T ss_pred HHHhhHhCCCCCCCHHHHHHHHHHHHhccCcccCcc----eeehHHHHHHHHHHHHHHHHHHH
Confidence 355689999999999999999999999886666554 33333555566666555554443
No 77
>KOG0724 consensus Zuotin and related molecular chaperones (DnaJ superfamily), contains DNA-binding domains [Posttranslational modification, protein turnover, chaperones]
Probab=87.15 E-value=0.89 Score=34.02 Aligned_cols=50 Identities=28% Similarity=0.355 Sum_probs=39.2
Q ss_pred CCHHHHHHHHHHHHHHhCCCCCCC----chHHHHHHHHHHHHHHHhhChhhHHH
Q 034178 46 ATEEEIRSNYIRLALKWHPDKQKD----RDCATSRFQEINEAYQEKNGSLILMV 95 (102)
Q Consensus 46 as~~eIk~ayr~l~~~~HPD~~~~----~~~a~~~f~~i~~Ay~~L~d~~~r~~ 95 (102)
++..+|..+|+..+...||++... .....+.+++|.+||.+|++...|..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~i~ka~~i~~~~~~~~t 57 (335)
T KOG0724|consen 4 ASEDELRLAYREMALKSHPEKKSFYEKLSLWTEEEFKKIEKALAILDDDEPRRT 57 (335)
T ss_pred ccHHHHHHHHHHHhhhcCcHHHHHHHHhhhhHHHHHHHHHHHHHHHhccccccc
Confidence 567789999999999999998752 11257779999999999998544333
No 78
>COG5552 Uncharacterized conserved protein [Function unknown]
Probab=81.93 E-value=8 Score=23.43 Aligned_cols=36 Identities=17% Similarity=0.261 Sum_probs=27.6
Q ss_pred CCcchhhccCCCCCHHHHHHHHHHHHHHhCCCCCCC
Q 034178 34 KDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKD 69 (102)
Q Consensus 34 ~~~y~vLgl~~~as~~eIk~ayr~l~~~~HPD~~~~ 69 (102)
.|--+++|++|.++..||+.+-++.+++..--..++
T Consensus 3 RNIk~LfnfdPPAT~~EvrdAAlQfVRKlSGtT~PS 38 (88)
T COG5552 3 RNIKELFNFDPPATPVEVRDAALQFVRKLSGTTHPS 38 (88)
T ss_pred cchHHHhCCCCCCCcHHHHHHHHHHHHHhcCCCCcc
Confidence 455678999999999999999888887774444333
No 79
>PF07709 SRR: Seven Residue Repeat; InterPro: IPR011714 This repeat is found in some Plasmodium and Theileria proteins.
Probab=75.24 E-value=1.8 Score=17.61 Aligned_cols=13 Identities=23% Similarity=0.764 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHhh
Q 034178 76 RFQEINEAYQEKN 88 (102)
Q Consensus 76 ~f~~i~~Ay~~L~ 88 (102)
.|..+..||+.|+
T Consensus 2 ~~~~V~~aY~~l~ 14 (14)
T PF07709_consen 2 KFEKVKNAYEQLS 14 (14)
T ss_pred cHHHHHHHHHhcC
Confidence 4677888888764
No 80
>COG2879 Uncharacterized small protein [Function unknown]
Probab=57.74 E-value=27 Score=20.40 Aligned_cols=29 Identities=34% Similarity=0.455 Sum_probs=21.3
Q ss_pred HHHHHHHHHhCCCCCCCchHHHHHHHHHHHH
Q 034178 53 SNYIRLALKWHPDKQKDRDCATSRFQEINEA 83 (102)
Q Consensus 53 ~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~A 83 (102)
..|..-.+..|||+.+-- -.|.|.+-.+|
T Consensus 26 dnYVehmr~~hPd~p~mT--~~EFfrec~da 54 (65)
T COG2879 26 DNYVEHMRKKHPDKPPMT--YEEFFRECQDA 54 (65)
T ss_pred HHHHHHHHHhCcCCCccc--HHHHHHHHHHh
Confidence 467888899999998864 35666666654
No 81
>PF08447 PAS_3: PAS fold; InterPro: IPR013655 The PAS fold corresponds to the structural domain that has previously been defined as PAS and PAC motifs []. The PAS fold appears in archaea, eubacteria and eukarya. The PAS domain contains a sensory box, or S-box domain that occupies the central portion of the PAS domain but is more widely distributed. It is often tandemly repeated. Known prosthetic groups bound in the S-box domain include haem in the oxygen sensor FixL [], FAD in the redox potential sensor NifL [], and a 4-hydroxycinnamyl chromophore in photoactive yellow protein []. Proteins containing the domain often contain other regulatory domains such as response regulator or sensor histidine kinase domains. Other S-box proteins include phytochromes and the aryl hydrocarbon receptor nuclear translocator. This domain has been found in the gene product of the madA gene of the filamentous zygomycete fungus Phycomyces blakesleeanus. It has been shown that MadA encodes a blue-light photoreceptor for phototropism and other light responses. The gene is involved in the phototropic responses associated with sporangiophore growth; they exhibit phototropism by bending toward near-UV and blue wavelengths and away from far-UV wavelengths in a manner that is physiologically similar to plant phototropic responses [].; GO: 0005515 protein binding; PDB: 3NJA_D 3H9W_A 3GDI_B 3ICY_A 3EEH_A 3MR0_B.
Probab=54.98 E-value=3.5 Score=23.85 Aligned_cols=31 Identities=26% Similarity=0.587 Sum_probs=21.5
Q ss_pred CCCcchhhccCCCCCHHHH-HHHHHHHHHHhCCCCC
Q 034178 33 PKDYYKILEVDYDATEEEI-RSNYIRLALKWHPDKQ 67 (102)
Q Consensus 33 ~~~~y~vLgl~~~as~~eI-k~ayr~l~~~~HPD~~ 67 (102)
..+++++||+++ +++ ......+....|||-.
T Consensus 5 s~~~~~i~G~~~----~~~~~~~~~~~~~~ihpdD~ 36 (91)
T PF08447_consen 5 SDNFYEIFGYSP----EEIGKPDFEEWLERIHPDDR 36 (91)
T ss_dssp -THHHHHHTS-H----HHHTCBEHHHHHHHB-TTTH
T ss_pred eHHHHHHhCCCH----HHhccCCHHHHHhhcCHHHH
Confidence 356789999954 666 6667778889999754
No 82
>PF10041 DUF2277: Uncharacterized conserved protein (DUF2277); InterPro: IPR018735 Members of this family of hypothetical bacterial proteins have no known function.
Probab=51.36 E-value=53 Score=19.86 Aligned_cols=36 Identities=19% Similarity=0.237 Sum_probs=27.8
Q ss_pred CCcchhhccCCCCCHHHHHHHHHHHHHHhCCCCCCC
Q 034178 34 KDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKD 69 (102)
Q Consensus 34 ~~~y~vLgl~~~as~~eIk~ayr~l~~~~HPD~~~~ 69 (102)
.|--.+.|+.|.+|.+||..|=.+.+++..=-..++
T Consensus 3 RnI~~L~~fePpaT~~EI~aAAlQyVRKvSG~~~Ps 38 (78)
T PF10041_consen 3 RNIKTLRNFEPPATDEEIRAAALQYVRKVSGFRKPS 38 (78)
T ss_pred cchhhhcCCCCCCCHHHHHHHHHHHHHHHccCCCcc
Confidence 344567789999999999999998888885544444
No 83
>PF07739 TipAS: TipAS antibiotic-recognition domain; InterPro: IPR012925 TipAL is a bacterial transcriptional regulator of the MerR family. The tipA gene can be expressed as a long form, TipAL, and a short form, TipAS, which constitutes the C-terminal part of TipAL. TipAS forms the antibiotic-recognition domain []. This domain, which has an alpha-helical globin-like fold, is also found at the C terminus of other MerR family transcription factors, including Mta, a central regulator of multidrug resistance in Bacillus subtilis [], and SkgA from Caulobacter crescentus []. ; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent; PDB: 1NY9_A 3HH0_A 3QAO_A.
Probab=49.27 E-value=47 Score=20.40 Aligned_cols=51 Identities=16% Similarity=0.271 Sum_probs=33.3
Q ss_pred ccCCCC-CHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhChhhHHHHH-hcC
Q 034178 41 EVDYDA-TEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQEKNGSLILMVKI-KFN 100 (102)
Q Consensus 41 gl~~~a-s~~eIk~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~~~-~f~ 100 (102)
|++|+. ...+|-+.++.++..+++ . ..+.+..|...| +.||.-+..++ .|+
T Consensus 51 g~~p~s~evq~l~~~~~~~~~~~~~----~---~~~~~~~l~~~y--~~~~~~~~~~~~~~~ 103 (118)
T PF07739_consen 51 GVDPDSPEVQELAERWMELINQFTG----G---DPELLRGLAQMY--VEDPRFAAMYDKKFG 103 (118)
T ss_dssp T--TT-HHHHHHHHHHHHHHHHSS----------HHHHHHHHHHT--TSTHHHHHHHG-GGS
T ss_pred CCCcCCHHHHHHHHHHHHHHHHHhC----C---CHHHHHHHHHHH--HcCHHHHhhccccCC
Confidence 666654 455677788888888877 1 357888888888 77887777776 665
No 84
>PF12434 Malate_DH: Malate dehydrogenase enzyme
Probab=48.54 E-value=26 Score=17.01 Aligned_cols=18 Identities=28% Similarity=0.510 Sum_probs=15.0
Q ss_pred CHHHHHHHHHHHHHHhCC
Q 034178 47 TEEEIRSNYIRLALKWHP 64 (102)
Q Consensus 47 s~~eIk~ayr~l~~~~HP 64 (102)
..++.+.+-|+.++.||-
T Consensus 9 ~~~~~r~~lR~AALeYHe 26 (28)
T PF12434_consen 9 NKEDKRAQLRQAALEYHE 26 (28)
T ss_pred chHHHHHHHHHHHHHhcc
Confidence 347888999999999984
No 85
>cd00084 HMG-box High Mobility Group (HMG)-box is found in a variety of eukaryotic chromosomal proteins and transcription factors. HMGs bind to the minor groove of DNA and have been classified by DNA binding preferences. Two phylogenically distinct groups of Class I proteins bind DNA in a sequence specific fashion and contain a single HMG box. One group (SOX-TCF) includes transcription factors, TCF-1, -3, -4; and also SRY and LEF-1, which bind four-way DNA junctions and duplex DNA targets. The second group (MATA) includes fungal mating type gene products MC, MATA1 and Ste11. Class II and III proteins (HMGB-UBF) bind DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal proteins, HMG1 and HMG2, which bind to bent or distorted DNA such as four-way DNA junctions, synthetic DNA cruciforms, kinked cisplatin-modified DNA, DNA bulges, cross-overs in supercoiled DNA, and can cause looping of linear DNA. Class III member
Probab=43.72 E-value=53 Score=17.67 Aligned_cols=42 Identities=7% Similarity=-0.090 Sum_probs=31.1
Q ss_pred HHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhChhhHHHHHh
Q 034178 52 RSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQEKNGSLILMVKIK 98 (102)
Q Consensus 52 k~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~~~~ 98 (102)
.+.++...+.-||+.. ..+....|...|..|++..+....+.
T Consensus 12 ~~~~~~~~~~~~~~~~-----~~~i~~~~~~~W~~l~~~~k~~y~~~ 53 (66)
T cd00084 12 SQEHRAEVKAENPGLS-----VGEISKILGEMWKSLSEEEKKKYEEK 53 (66)
T ss_pred HHHHHHHHHHHCcCCC-----HHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 4566777777888843 56888899999999998776655443
No 86
>PF11126 Phage_DsbA: Transcriptional regulator DsbA; InterPro: IPR020313 DsbA is a double stranded binding protein found in bacteriophage T4 which is involved in transcriptional regulation. DsbA, along with other viral proteins, interacts with the host RNA polymerase core enzyme enabling initiation of transcription. DsbA acts as an enhancer protein of late genes in vitro. The protein consists of mainly alpha helices [].
Probab=43.13 E-value=29 Score=20.53 Aligned_cols=32 Identities=16% Similarity=0.256 Sum_probs=22.7
Q ss_pred HHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHh
Q 034178 53 SNYIRLALKWHPDKQKDRDCATSRFQEINEAYQEK 87 (102)
Q Consensus 53 ~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L 87 (102)
+-|-++.+.||-+... ..++.-.++.+.|+.+
T Consensus 35 k~Fnkl~~lyHk~~Re---~fE~e~ee~~elYD~~ 66 (69)
T PF11126_consen 35 KMFNKLLKLYHKQERE---EFEAENEEVVELYDAV 66 (69)
T ss_pred HHHHHHHHHHHHhhHH---HHHHHHHHHHHHHHHH
Confidence 5688899999875443 2455666788888776
No 87
>cd01780 PLC_epsilon_RA Ubiquitin-like domain of Phosphatidylinositide-specific phospholipase. PLC_epsilon_RA Phosphatidylinositide-specific phospholipase C (PLC) is a signaling enzyme that hydrolyzes membrane phospholipids to generate inositol triphosphate. PLC-epsilon represents a novel forth class of PLC that has a PLC catalytic core domain, a CDC25 guanine nucleotide exchange factor domain and two RA (Ras-association) domains of which the second is critical for Ras activation of the enzyme.
Probab=40.57 E-value=32 Score=21.53 Aligned_cols=36 Identities=19% Similarity=0.306 Sum_probs=26.4
Q ss_pred CCCCcchhhccCCCCCHHHHHHHHHHHHHHhCCCCC
Q 034178 32 KPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQ 67 (102)
Q Consensus 32 ~~~~~y~vLgl~~~as~~eIk~ayr~l~~~~HPD~~ 67 (102)
.+..+|.||.++...|..+|-+.-...|++-+||-.
T Consensus 9 s~dqP~~il~a~~~STa~Dvi~Qal~KA~rs~~~~~ 44 (93)
T cd01780 9 SPDQPYAILRAPRVSTAQDVIQQTLCKARRSNPNPS 44 (93)
T ss_pred CCCCCeeEEEccccccHHHHHHHHHHHhccCCCCcc
Confidence 456899999999988877766555555566677764
No 88
>PF14706 Tnp_DNA_bind: Transposase DNA-binding; PDB: 3ECP_A 4DM0_A 1MUS_A 1MUH_A 1MM8_A.
Probab=40.09 E-value=46 Score=18.86 Aligned_cols=41 Identities=17% Similarity=0.233 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHh--CCCCCCCchHHHHHHHHHHHHHHHhhChh
Q 034178 49 EEIRSNYIRLALKW--HPDKQKDRDCATSRFQEINEAYQEKNGSL 91 (102)
Q Consensus 49 ~eIk~ayr~l~~~~--HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~ 91 (102)
.-+.+...+++..+ ||...- +.+.+....+..||..|.||.
T Consensus 15 ~Rl~~Rl~~l~~~la~~p~~Si--p~a~~~wa~tkaAYRF~~N~~ 57 (58)
T PF14706_consen 15 KRLTRRLVKLAESLAEKPGASI--PQACQDWAETKAAYRFFRNPR 57 (58)
T ss_dssp HHHHHHHHHHHHHHHHTTTS-H--HHHTT-HHHHHHHHHHHT-TT
T ss_pred chHHHHHHHHHHHHHHCCCCcc--chhccCHHHHHHHHHhhcCCC
Confidence 34567777776644 665543 346678889999999999874
No 89
>PF12725 DUF3810: Protein of unknown function (DUF3810); InterPro: IPR024294 This family of bacterial proteins is functionally uncharacterised. Proteins in this family are typically between 333 and 377 amino acids in length and contain a conserved HEXXH sequence motif that is characteristic of metallopeptidases. This family may therefore belong to an as yet uncharacterised family of peptidase enzymes.
Probab=39.74 E-value=1.1e+02 Score=23.04 Aligned_cols=59 Identities=17% Similarity=0.105 Sum_probs=38.9
Q ss_pred CCCCcchhhccCC-CCCHHHHHHHHHHHHHHh-------CCCCCCC---chHHHHHHHHHHHHHHHhhCh
Q 034178 32 KPKDYYKILEVDY-DATEEEIRSNYIRLALKW-------HPDKQKD---RDCATSRFQEINEAYQEKNGS 90 (102)
Q Consensus 32 ~~~~~y~vLgl~~-~as~~eIk~ayr~l~~~~-------HPD~~~~---~~~a~~~f~~i~~Ay~~L~d~ 90 (102)
-..+.++-||++. ..+.+|+.+--+.++.+. ++|..+. +..-.+.++.+.+||+.|.+.
T Consensus 80 ~R~pl~~~l~l~~~~~~~~eL~~l~~~li~~~N~l~~~i~~~~~~~~~~~~~~~~i~~~~~~~y~~l~~~ 149 (318)
T PF12725_consen 80 YRPPLSERLGLETEEYSTEELKELTEYLIEKANELREQITEDDNGVVDIPYDKEEIFEEAREGYENLAER 149 (318)
T ss_pred CCcCHHHHcCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCccccccCCCCHHHHHHHHHHHHHHHHHh
Confidence 3446677899998 778888777666555443 3333211 112478899999999998753
No 90
>smart00427 H2B Histone H2B.
Probab=39.13 E-value=90 Score=19.35 Aligned_cols=15 Identities=20% Similarity=0.335 Sum_probs=11.6
Q ss_pred HHHHHHhCCCCCCCc
Q 034178 56 IRLALKWHPDKQKDR 70 (102)
Q Consensus 56 r~l~~~~HPD~~~~~ 70 (102)
.+..++.|||..-..
T Consensus 8 ~kvLKqVhpd~giS~ 22 (89)
T smart00427 8 YKVLKQVHPDTGISS 22 (89)
T ss_pred HHHHHHhCCCccccH
Confidence 566789999997654
No 91
>KOG2320 consensus RAS effector RIN1 (contains VPS domain) [Intracellular trafficking, secretion, and vesicular transport]
Probab=38.97 E-value=55 Score=27.20 Aligned_cols=37 Identities=11% Similarity=0.321 Sum_probs=26.4
Q ss_pred cCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHh
Q 034178 42 VDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQEK 87 (102)
Q Consensus 42 l~~~as~~eIk~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L 87 (102)
++..+..++||.+++++.+.|||. ++...+.+|.+.|
T Consensus 397 ~Ps~~~mEqvk~k~~~m~r~YSP~---------kkl~~Llk~ckLl 433 (651)
T KOG2320|consen 397 TPSDVLMEQVKQKFTAMQRRYSPS---------KKLHALLKACKLL 433 (651)
T ss_pred CCcHHHHHHHHHHHHHHHHhhChH---------HHHHHHHHHHHHH
Confidence 344567888999999999999994 4444555555444
No 92
>PF15178 TOM_sub5: Mitochondrial import receptor subunit TOM5 homolog
Probab=38.56 E-value=42 Score=18.43 Aligned_cols=24 Identities=13% Similarity=0.224 Sum_probs=19.1
Q ss_pred chhhccCCCCCHHHHHHHHHHHHH
Q 034178 37 YKILEVDYDATEEEIRSNYIRLAL 60 (102)
Q Consensus 37 y~vLgl~~~as~~eIk~ayr~l~~ 60 (102)
+.+=|+.|..+++|.|+.-|+-..
T Consensus 2 ~~~egl~pk~DPeE~k~kmR~dvi 25 (51)
T PF15178_consen 2 FRIEGLGPKMDPEEMKRKMREDVI 25 (51)
T ss_pred cccccCCCCCCHHHHHHHHHHHHH
Confidence 456689999999999998876543
No 93
>PF03820 Mtc: Tricarboxylate carrier; InterPro: IPR004686 The MTC family consists of a limited number of homologues, all from eukaryotes. One member of the family has been functionally characterised as a tricarboxylate carrier from rat liver mitochondria. The rat liver mitochondrial tricarboxylate carrier has been reported to transport citrate, cis-aconitate, threo-D-isocitrate, D- and L-tartrate, malate, succinate and phosphoenolpyruvate. It presumably functions by a proton symport mechanism. The rest of the characterised proteins appear to be sideroflexins involved in iron transport.; GO: 0008324 cation transmembrane transporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016020 membrane
Probab=35.70 E-value=43 Score=25.34 Aligned_cols=50 Identities=18% Similarity=0.159 Sum_probs=37.0
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCCCCCc--------------------------hHHHHHHHHHHHHHHHhhChhhH
Q 034178 44 YDATEEEIRSNYIRLALKWHPDKQKDR--------------------------DCATSRFQEINEAYQEKNGSLIL 93 (102)
Q Consensus 44 ~~as~~eIk~ayr~l~~~~HPD~~~~~--------------------------~~a~~~f~~i~~Ay~~L~d~~~r 93 (102)
++.+.+++-+|-+..-..+|||...-. ..+.-.+|-+|..|.++=|-..|
T Consensus 46 ~~~~~~~lw~Ak~l~~Sa~HPDTge~i~~~fRmsa~vP~n~~i~~~mL~~~~s~~~~ifwQw~NQS~Na~vNy~Nr 121 (308)
T PF03820_consen 46 PGLTDDELWKAKKLYDSAFHPDTGEKIPLPFRMSAFVPFNMPITGGMLTPYKSTPAVIFWQWVNQSYNAAVNYTNR 121 (308)
T ss_pred CCCCHHHHHHHHHHhhcccCCCCCCccccccccccccccchHHHHHHhccCcchHHHHHHHHHHhHHHHHHhhhcc
Confidence 356999999999999999999985431 12455677888888887654433
No 94
>cd01388 SOX-TCF_HMG-box SOX-TCF_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and transcription factor-like proteins, TCF-1, -3, -4, and LEF-1. They appear to bind the minor groove of the A/T C A A A G/C-motif.
Probab=34.93 E-value=89 Score=17.72 Aligned_cols=40 Identities=10% Similarity=-0.033 Sum_probs=28.9
Q ss_pred HHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhChhhHHHHH
Q 034178 53 SNYIRLALKWHPDKQKDRDCATSRFQEINEAYQEKNGSLILMVKI 97 (102)
Q Consensus 53 ~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~~~ 97 (102)
+..+...+.-||+.. ..+..+.|.+.|..|++..+....+
T Consensus 14 ~~~r~~~~~~~p~~~-----~~eisk~l~~~Wk~ls~~eK~~y~~ 53 (72)
T cd01388 14 KRHRRKVLQEYPLKE-----NRAISKILGDRWKALSNEEKQPYYE 53 (72)
T ss_pred HHHHHHHHHHCCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 445666667789853 4688889999999999887655443
No 95
>cd01390 HMGB-UBF_HMG-box HMGB-UBF_HMG-box, class II and III members of the HMG-box superfamily of DNA-binding proteins. These proteins bind the minor groove of DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal proteins, HMG1 and HMG2, which bind to bent or distorted DNA such as four-way DNA junctions, synthetic DNA cruciforms, kinked cisplatin-modified DNA, DNA bulges, cross-overs in supercoiled DNA, and can cause looping of linear DNA. Class III members include nucleolar and mitochondrial transcription factors, UBF and mtTF1, which bind four-way DNA junctions.
Probab=34.52 E-value=81 Score=17.08 Aligned_cols=40 Identities=18% Similarity=0.053 Sum_probs=28.7
Q ss_pred HHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhChhhHHHHHh
Q 034178 54 NYIRLALKWHPDKQKDRDCATSRFQEINEAYQEKNGSLILMVKIK 98 (102)
Q Consensus 54 ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~~~~ 98 (102)
..+...+.-||+.. ..+..+.|.+.|..|++..+....+.
T Consensus 14 ~~r~~~~~~~p~~~-----~~~i~~~~~~~W~~ls~~eK~~y~~~ 53 (66)
T cd01390 14 EQRPKLKKENPDAS-----VTEVTKILGEKWKELSEEEKKKYEEK 53 (66)
T ss_pred HHHHHHHHHCcCCC-----HHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 34555566688843 57888999999999998776655444
No 96
>COG0089 RplW Ribosomal protein L23 [Translation, ribosomal structure and biogenesis]
Probab=32.90 E-value=40 Score=21.13 Aligned_cols=21 Identities=38% Similarity=0.431 Sum_probs=18.3
Q ss_pred hhccCCCCCHHHHHHHHHHHH
Q 034178 39 ILEVDYDATEEEIRSNYIRLA 59 (102)
Q Consensus 39 vLgl~~~as~~eIk~ayr~l~ 59 (102)
+|-|++.|+..+||.|...+-
T Consensus 25 vF~V~~~AtK~~IK~AvE~lF 45 (94)
T COG0089 25 VFIVDPDATKPEIKAAVEELF 45 (94)
T ss_pred EEEECCCCCHHHHHHHHHHHh
Confidence 678999999999999998763
No 97
>PRK14102 nifW nitrogenase stabilizing/protective protein; Provisional
Probab=31.38 E-value=57 Score=20.86 Aligned_cols=63 Identities=19% Similarity=0.285 Sum_probs=37.0
Q ss_pred hhhhhhcCCCCcchhhccCCCC-----CHHHHHHHHHHHHHHhCCCCCCCc-hHH-HHHHHHHHHHHHHh
Q 034178 25 DFLSLLAKPKDYYKILEVDYDA-----TEEEIRSNYIRLALKWHPDKQKDR-DCA-TSRFQEINEAYQEK 87 (102)
Q Consensus 25 ~~~~~~~~~~~~y~vLgl~~~a-----s~~eIk~ayr~l~~~~HPD~~~~~-~~a-~~~f~~i~~Ay~~L 87 (102)
.....+.+..+|++.|||+-+. +.=-|=+.|.......+.+..... ++. ...=..+.+||+..
T Consensus 6 ~~l~~LssAEdFf~ff~v~YDp~vvnV~RLHILkrf~qyl~~~~~~~~~~~e~~~~~~yr~~L~~AY~dF 75 (105)
T PRK14102 6 KEFKKLVDAEDYFQFFELPYDPTVVNVNRLHILKQFSQLIAEIDANFPDLSEEEKLEKYQLALEEAYQVF 75 (105)
T ss_pred HHHHHhccHHHHHHHhCCCCCcchhhHHHHHHHHHHHHHHHHhccccCCCCHHHHHHHHHHHHHHHHHHH
Confidence 3445566778999999998643 444577777777666543332221 112 22233467788764
No 98
>CHL00030 rpl23 ribosomal protein L23
Probab=30.58 E-value=47 Score=20.65 Aligned_cols=20 Identities=25% Similarity=0.302 Sum_probs=17.9
Q ss_pred hhccCCCCCHHHHHHHHHHH
Q 034178 39 ILEVDYDATEEEIRSNYIRL 58 (102)
Q Consensus 39 vLgl~~~as~~eIk~ayr~l 58 (102)
++-|++.|+..+||+|...+
T Consensus 23 ~F~V~~~anK~eIK~avE~l 42 (93)
T CHL00030 23 TFDVDSGSTKTEIKHWIELF 42 (93)
T ss_pred EEEECCCCCHHHHHHHHHHH
Confidence 56799999999999999876
No 99
>PLN00158 histone H2B; Provisional
Probab=30.52 E-value=1.4e+02 Score=19.39 Aligned_cols=16 Identities=19% Similarity=0.299 Sum_probs=12.4
Q ss_pred HHHHHHHhCCCCCCCc
Q 034178 55 YIRLALKWHPDKQKDR 70 (102)
Q Consensus 55 yr~l~~~~HPD~~~~~ 70 (102)
-.+..++.|||..-..
T Consensus 33 I~kVLKQVhPd~gIS~ 48 (116)
T PLN00158 33 IYKVLKQVHPDTGISS 48 (116)
T ss_pred HHHHHHHhCCCCCccH
Confidence 4667788999998764
No 100
>PTZ00463 histone H2B; Provisional
Probab=29.27 E-value=1.6e+02 Score=19.27 Aligned_cols=15 Identities=27% Similarity=0.481 Sum_probs=11.5
Q ss_pred HHHHHHhCCCCCCCc
Q 034178 56 IRLALKWHPDKQKDR 70 (102)
Q Consensus 56 r~l~~~~HPD~~~~~ 70 (102)
.+..++.|||..-..
T Consensus 35 ~KVLKqVhPd~gIS~ 49 (117)
T PTZ00463 35 FKVLKQVHPDTGISR 49 (117)
T ss_pred HHHHHhhCCCCCccH
Confidence 556678899998764
No 101
>KOG3960 consensus Myogenic helix-loop-helix transcription factor [Transcription]
Probab=28.88 E-value=45 Score=24.78 Aligned_cols=15 Identities=27% Similarity=0.607 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHhh
Q 034178 74 TSRFQEINEAYQEKN 88 (102)
Q Consensus 74 ~~~f~~i~~Ay~~L~ 88 (102)
..+.++||+|+|+|+
T Consensus 127 RRRLkKVNEAFE~LK 141 (284)
T KOG3960|consen 127 RRRLKKVNEAFETLK 141 (284)
T ss_pred HHHHHHHHHHHHHHH
Confidence 356899999999985
No 102
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=28.66 E-value=48 Score=17.75 Aligned_cols=23 Identities=26% Similarity=0.345 Sum_probs=18.7
Q ss_pred hhccCCCCCHHHHHHHHHHHHHH
Q 034178 39 ILEVDYDATEEEIRSNYIRLALK 61 (102)
Q Consensus 39 vLgl~~~as~~eIk~ayr~l~~~ 61 (102)
|=||+++++.++|++.+......
T Consensus 3 v~nlp~~~t~~~l~~~f~~~g~i 25 (70)
T PF00076_consen 3 VGNLPPDVTEEELRDFFSQFGKI 25 (70)
T ss_dssp EESETTTSSHHHHHHHHHTTSTE
T ss_pred EcCCCCcCCHHHHHHHHHHhhhc
Confidence 34789999999999999876554
No 103
>PF00505 HMG_box: HMG (high mobility group) box; InterPro: IPR000910 High mobility group (HMG or HMGB) proteins are a family of relatively low molecular weight non-histone components in chromatin. HMG1 (also called HMG-T in fish) and HMG2 are two highly related proteins that bind single-stranded DNA preferentially and unwind double-stranded DNA. Although they have no sequence specificity, they have a high affinity for bent or distorted DNA, and bend linear DNA. HMG1 and HMG2 contain two DNA-binding HMG-box domains (A and B) that show structural and functional differences, and have a long acidic C-terminal domain rich in aspartic and glutamic acid residues. The acidic tail modulates the affinity of the tandem HMG boxes in HMG1 and 2 for a variety of DNA targets. HMG1 and 2 appear to play important architectural roles in the assembly of nucleoprotein complexes in a variety of biological processes, for example V(D)J recombination, the initiation of transcription, and DNA repair []. The profile in this entry describing the HMG-domains is much more general than the signature. In addition to the HMG1 and HMG2 proteins, HMG-domains occur in single or multiple copies in the following protein classes; the SOX family of transcription factors; SRY sex determining region Y protein and related proteins []; LEF1 lymphoid enhancer binding factor 1 []; SSRP recombination signal recognition protein; MTF1 mitochondrial transcription factor 1; UBF1/2 nucleolar transcription factors; Abf2 yeast ARS-binding factor []; and Saccharomyces cerevisiae transcription factors Ixr1, Rox1, Nhp6a, Nhp6b and Spp41.; GO: 0003677 DNA binding; PDB: 1I11_A 1J3C_A 1J3D_A 1WZ6_A 1WGF_A 2D7L_A 1GT0_D 3U2B_C 2CRJ_A 2CS1_A ....
Probab=28.16 E-value=1.1e+02 Score=16.70 Aligned_cols=41 Identities=7% Similarity=-0.082 Sum_probs=28.8
Q ss_pred HHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhChhhHHHHH
Q 034178 52 RSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQEKNGSLILMVKI 97 (102)
Q Consensus 52 k~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~~~ 97 (102)
.+..+...+.-||+.. ..+..+.|.+.|..|++..+....+
T Consensus 12 ~~~~~~~~k~~~p~~~-----~~~i~~~~~~~W~~l~~~eK~~y~~ 52 (69)
T PF00505_consen 12 CKEKRAKLKEENPDLS-----NKEISKILAQMWKNLSEEEKAPYKE 52 (69)
T ss_dssp HHHHHHHHHHHSTTST-----HHHHHHHHHHHHHCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccc-----cccchhhHHHHHhcCCHHHHHHHHH
Confidence 3455666667789776 4677888888898888776555443
No 104
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=27.06 E-value=1.7e+02 Score=20.84 Aligned_cols=57 Identities=16% Similarity=-0.009 Sum_probs=44.8
Q ss_pred hhccCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhChhhHHHHHhc
Q 034178 39 ILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQEKNGSLILMVKIKF 99 (102)
Q Consensus 39 vLgl~~~as~~eIk~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~~~~f 99 (102)
+.|+....+.++|-+..=.|+...|.|--- ..++-..|..=|+++.+|.....|..+
T Consensus 2 L~GC~~~~~t~~iC~~nP~LC~dLn~Dg~C----r~eRtdLI~~Ry~~~~~pt~~~ky~~l 58 (203)
T PF11207_consen 2 LSGCFENPNTEQICENNPELCEDLNDDGWC----RYERTDLIWHRYELKKNPTDKNKYQLL 58 (203)
T ss_pred CcCcCCCCCHHHHHccCHHHHHHhCcchhh----ccHhHHHHHHHHHHhcCCchHHHHHHH
Confidence 457777888999999999999999965543 356777888889999999887776654
No 105
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=26.61 E-value=62 Score=19.35 Aligned_cols=20 Identities=30% Similarity=0.378 Sum_probs=17.6
Q ss_pred hhccCCCCCHHHHHHHHHHH
Q 034178 39 ILEVDYDATEEEIRSNYIRL 58 (102)
Q Consensus 39 vLgl~~~as~~eIk~ayr~l 58 (102)
++-|++.++..+||+|...+
T Consensus 18 ~F~V~~~anK~eIK~avE~l 37 (77)
T TIGR03636 18 TFIVDRKATKGDIKRAVEKL 37 (77)
T ss_pred EEEECCCCCHHHHHHHHHHH
Confidence 46789999999999998877
No 106
>PF05823 Gp-FAR-1: Nematode fatty acid retinoid binding protein (Gp-FAR-1); InterPro: IPR008632 Parasitic nematodes produce at least two structurally novel classes of small helix-rich retinol- and fatty-acid-binding proteins that have no counterparts in their plant or animal hosts and thus represent potential targets for new nematicides. Gp-FAR-1 is a member of the nematode-specific fatty-acid- and retinol-binding (FAR) family of proteins but localises to the surface of the organism, placing it in a strategic position for interaction with the host. Gp-FAR-1 functions as a broad-spectrum retinol- and fatty-acid-binding protein, and it is thought that it is involved in the evasion of primary host plant defence systems [].; GO: 0008289 lipid binding; PDB: 2W9Y_A.
Probab=26.08 E-value=1.2e+02 Score=20.38 Aligned_cols=51 Identities=12% Similarity=0.143 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhChhhHHHHHhc
Q 034178 49 EEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQEKNGSLILMVKIKF 99 (102)
Q Consensus 49 ~eIk~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~~~~f 99 (102)
.++....+.+.-..+.+..+..+........+...|..|+.+.+-.|...|
T Consensus 83 ~~li~~~~~l~~~~~~G~~~~~~~lk~~~k~~~~~ykaLs~~ak~dL~k~F 133 (154)
T PF05823_consen 83 KELIAKARSLYAQYSAGEKPDLEELKQLAKKVIDSYKALSPEAKDDLKKNF 133 (154)
T ss_dssp HHHHHHHHHHHHHHHHT----THHHHHHH----HHHHTS-HHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHhcCCCCCCHHHHHHHHhhhHHHHHcCCHHHHHHHHHHC
Confidence 345555566666655555555444566677888999999988877776665
No 107
>PF14606 Lipase_GDSL_3: GDSL-like Lipase/Acylhydrolase family; PDB: 3SKV_B.
Probab=25.86 E-value=1.1e+02 Score=21.24 Aligned_cols=62 Identities=18% Similarity=0.212 Sum_probs=33.2
Q ss_pred hhhhcCCCCcchhhccCCCCCHHHHHHHHHHH---HHHhCCCCCC----------------CchHHHHHHHHHHHHHHHh
Q 034178 27 LSLLAKPKDYYKILEVDYDATEEEIRSNYIRL---ALKWHPDKQK----------------DRDCATSRFQEINEAYQEK 87 (102)
Q Consensus 27 ~~~~~~~~~~y~vLgl~~~as~~eIk~ayr~l---~~~~HPD~~~----------------~~~~a~~~f~~i~~Ay~~L 87 (102)
...+.....-.-+|.+.++.+.++++.+...+ .+.-|||+.- ......+.=..+.++++.|
T Consensus 52 a~~ia~~~a~~~~ld~~~N~~~~~~~~~~~~fv~~iR~~hP~tPIllv~~~~~~~~~~~~~~~~~~~~~~~~~r~~v~~l 131 (178)
T PF14606_consen 52 ADLIAEIDADLIVLDCGPNMSPEEFRERLDGFVKTIREAHPDTPILLVSPIPYPAGYFDNSRGETVEEFREALREAVEQL 131 (178)
T ss_dssp HHHHHHS--SEEEEEESHHCCTTTHHHHHHHHHHHHHTT-SSS-EEEEE----TTTTS--TTS--HHHHHHHHHHHHHHH
T ss_pred HHHHhcCCCCEEEEEeecCCCHHHHHHHHHHHHHHHHHhCCCCCEEEEecCCccccccCchHHHHHHHHHHHHHHHHHHH
Confidence 33333333344466666667777777766554 4555999811 0122345556677788877
Q ss_pred h
Q 034178 88 N 88 (102)
Q Consensus 88 ~ 88 (102)
.
T Consensus 132 ~ 132 (178)
T PF14606_consen 132 R 132 (178)
T ss_dssp H
T ss_pred H
Confidence 3
No 108
>PF04967 HTH_10: HTH DNA binding domain; InterPro: IPR007050 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. This entry represents the HTH DNA binding domain found in Halobacterium salinarium (Halobacterium halobium) and described as a putative bacterio-opsin activator.
Probab=25.11 E-value=36 Score=18.93 Aligned_cols=22 Identities=18% Similarity=0.249 Sum_probs=15.1
Q ss_pred hhhccCCCCCHHHHHHHHHHHH
Q 034178 38 KILEVDYDATEEEIRSNYIRLA 59 (102)
Q Consensus 38 ~vLgl~~~as~~eIk~ayr~l~ 59 (102)
+.|||++.+-.+-|+++-+++.
T Consensus 31 ~~lgis~st~~~~LRrae~kli 52 (53)
T PF04967_consen 31 EELGISKSTVSEHLRRAERKLI 52 (53)
T ss_pred HHhCCCHHHHHHHHHHHHHHHh
Confidence 5577777766667777776654
No 109
>cd01389 MATA_HMG-box MATA_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include the fungal mating type gene products MC, MATA1 and Ste11.
Probab=24.77 E-value=1.5e+02 Score=16.98 Aligned_cols=39 Identities=8% Similarity=0.017 Sum_probs=29.1
Q ss_pred HHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhChhhHHH
Q 034178 52 RSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQEKNGSLILMV 95 (102)
Q Consensus 52 k~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~ 95 (102)
.+.++..++.-||+.. ..+..+.|.+.|..|++..+...
T Consensus 13 ~~~~r~~~~~~~p~~~-----~~eisk~~g~~Wk~ls~eeK~~y 51 (77)
T cd01389 13 RQDKHAQLKTENPGLT-----NNEISRIIGRMWRSESPEVKAYY 51 (77)
T ss_pred HHHHHHHHHHHCCCCC-----HHHHHHHHHHHHhhCCHHHHHHH
Confidence 4566777788899863 46788888899999888765444
No 110
>PF12057 DUF3538: Domain of unknown function (DUF3538); InterPro: IPR021925 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 120 amino acids in length. This domain is found associated with PF00240 from PFAM. This domain has a conserved SDL sequence motif.
Probab=24.28 E-value=1.5e+02 Score=19.41 Aligned_cols=17 Identities=12% Similarity=0.317 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHhhC
Q 034178 73 ATSRFQEINEAYQEKNG 89 (102)
Q Consensus 73 a~~~f~~i~~Ay~~L~d 89 (102)
..|.+..+..||-.|||
T Consensus 51 VsEalh~lsHA~hAlSD 67 (120)
T PF12057_consen 51 VSEALHYLSHAYHALSD 67 (120)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45666677777777776
No 111
>PRK05738 rplW 50S ribosomal protein L23; Reviewed
Probab=24.21 E-value=71 Score=19.62 Aligned_cols=20 Identities=40% Similarity=0.551 Sum_probs=17.6
Q ss_pred hhccCCCCCHHHHHHHHHHH
Q 034178 39 ILEVDYDATEEEIRSNYIRL 58 (102)
Q Consensus 39 vLgl~~~as~~eIk~ayr~l 58 (102)
+|-+++.++..|||++...+
T Consensus 24 ~F~V~~~a~K~eIK~aie~l 43 (92)
T PRK05738 24 VFEVAPDATKPEIKAAVEKL 43 (92)
T ss_pred EEEECCCCCHHHHHHHHHHH
Confidence 56789999999999998876
No 112
>PF02216 B: B domain; InterPro: IPR003132 This entry represents the immunoglobulin-binding domain found in the Staphylococcus aureus virulence factor protein A (SpA). Protein A contains five highly homologous Ig-binding domains in tandem (designated domains E, D, A, B and C), which share a common structure consisting of three helices in a closed left-handed twist. Protein A can exist in both secreted and membrane-bound forms, and has two distinct Ig-binding activities: each domain can bind Fc-gamma (the constant region of IgG involved in effector functions) and Fab (the Ig fragment responsible for antigen recognition) [].; GO: 0019865 immunoglobulin binding, 0009405 pathogenesis; PDB: 1EDL_A 1EDI_A 1EDJ_A 1EDK_A 2B88_A 2B87_A 2B89_A 1FC2_C 1DEE_H 1ZXG_A ....
Probab=24.08 E-value=1.5e+02 Score=16.71 Aligned_cols=31 Identities=32% Similarity=0.590 Sum_probs=19.2
Q ss_pred CcchhhccCCCCCHHHHHHHHHHHHHHhCCCCCC
Q 034178 35 DYYKILEVDYDATEEEIRSNYIRLALKWHPDKQK 68 (102)
Q Consensus 35 ~~y~vLgl~~~as~~eIk~ayr~l~~~~HPD~~~ 68 (102)
.||+||+++.-. +|=|-.|-+- ++-||+...
T Consensus 12 AFY~vl~~~nLt--eeQrn~yI~~-lKddPs~sq 42 (54)
T PF02216_consen 12 AFYEVLHMPNLT--EEQRNGYIQS-LKDDPSRSQ 42 (54)
T ss_dssp HHHHHHCSTTS---HHHHHHHHHH-HHH-GCCHH
T ss_pred HHHHHHcCCCcC--HHHHHhHHHH-HhhChHHHH
Confidence 589999987632 4446666654 556787653
No 113
>TIGR00824 EIIA-man PTS system, mannose/fructose/sorbose family, IIA component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Man family is unique in several respects among PTS permease families It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the IIA components.
Probab=23.96 E-value=1.9e+02 Score=18.15 Aligned_cols=37 Identities=5% Similarity=0.074 Sum_probs=29.4
Q ss_pred hcCCCCcchhhccCCCCCHHHHHHHHHHHHHHhCCCC
Q 034178 30 LAKPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDK 66 (102)
Q Consensus 30 ~~~~~~~y~vLgl~~~as~~eIk~ayr~l~~~~HPD~ 66 (102)
+....+-...+++.++-+.++++++..+....+.++.
T Consensus 23 i~G~~~~i~~i~~~~~~~~~~~~~~l~~~i~~~~~~~ 59 (116)
T TIGR00824 23 IFGEQNNVGAVPFVPGENAETLQEKYNAALADLDTEE 59 (116)
T ss_pred HcCCcCCeEEEEcCCCcCHHHHHHHHHHHHHhcCCCC
Confidence 3344455788899999999999999999999886543
No 114
>KOG3767 consensus Sideroflexin [General function prediction only]
Probab=23.01 E-value=92 Score=23.86 Aligned_cols=29 Identities=21% Similarity=0.303 Sum_probs=24.8
Q ss_pred ccCCCCCHHHHHHHHHHHHHHhCCCCCCC
Q 034178 41 EVDYDATEEEIRSNYIRLALKWHPDKQKD 69 (102)
Q Consensus 41 gl~~~as~~eIk~ayr~l~~~~HPD~~~~ 69 (102)
.++++.+.+++=+|-+..-..+|||....
T Consensus 61 ~~~p~~t~~~lW~Akkl~dS~~HPDTgEk 89 (328)
T KOG3767|consen 61 KVPPGLTDDELWKAKKLYDSTFHPDTGEK 89 (328)
T ss_pred CcCCCCcHHHHHHHHHHHhcccCCCCCCc
Confidence 46677889999999999999999999653
No 115
>PF11590 DNAPolymera_Pol: DNA polymerase catalytic subunit Pol; InterPro: IPR021639 This family of proteins represents the catalytic subunit, Pol, of the Herpes simplex virus DNA polymerase. Pol binds UL42, making up the DNA polymerase. UL42 is a processivity subunit which binds to the C-terminal of Pol in a similar way that the cell cycle regulator p21 binds to PCNA []. ; GO: 0003887 DNA-directed DNA polymerase activity, 0004523 ribonuclease H activity; PDB: 1DML_H.
Probab=22.92 E-value=1.3e+02 Score=15.94 Aligned_cols=16 Identities=13% Similarity=0.156 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHhh
Q 034178 73 ATSRFQEINEAYQEKN 88 (102)
Q Consensus 73 a~~~f~~i~~Ay~~L~ 88 (102)
.+|.-++++.|+++|.
T Consensus 26 eeEt~qkL~~AF~iLa 41 (41)
T PF11590_consen 26 EEETRQKLRRAFDILA 41 (41)
T ss_dssp HHHHHHHHHHHHHHH-
T ss_pred hHHHHHHHHHHHHhhC
Confidence 5677888888988873
No 116
>PF04282 DUF438: Family of unknown function (DUF438); InterPro: IPR007380 This is a a group of uncharacterised proteins.
Probab=22.92 E-value=51 Score=19.54 Aligned_cols=25 Identities=12% Similarity=0.199 Sum_probs=19.3
Q ss_pred hccCCCCCHHHHHHHHHHHHHHhCC
Q 034178 40 LEVDYDATEEEIRSNYIRLALKWHP 64 (102)
Q Consensus 40 Lgl~~~as~~eIk~ayr~l~~~~HP 64 (102)
+.|+.+.+.++||+.|.+......|
T Consensus 7 ~~Lh~G~~~e~vk~~F~~~~~~Vs~ 31 (71)
T PF04282_consen 7 KRLHEGEDPEEVKEEFKKLFSDVSA 31 (71)
T ss_pred HHHhCCCCHHHHHHHHHHHHCCCCH
Confidence 4567788999999999988765544
No 117
>smart00360 RRM RNA recognition motif.
Probab=22.06 E-value=97 Score=15.85 Aligned_cols=20 Identities=30% Similarity=0.431 Sum_probs=16.5
Q ss_pred hccCCCCCHHHHHHHHHHHH
Q 034178 40 LEVDYDATEEEIRSNYIRLA 59 (102)
Q Consensus 40 Lgl~~~as~~eIk~ayr~l~ 59 (102)
-||+...+.++|+..+....
T Consensus 2 ~~l~~~~~~~~l~~~f~~~g 21 (71)
T smart00360 2 GNLPPDVTEEELRELFSKFG 21 (71)
T ss_pred CCCCcccCHHHHHHHHHhhC
Confidence 47788899999999998764
No 118
>PF13021 DUF3885: Domain of unknown function (DUF3885)
Probab=21.56 E-value=36 Score=17.69 Aligned_cols=12 Identities=25% Similarity=0.301 Sum_probs=7.8
Q ss_pred hhHHHHHhcCCC
Q 034178 91 LILMVKIKFNQF 102 (102)
Q Consensus 91 ~~r~~~~~f~~~ 102 (102)
..|.+|.+|++|
T Consensus 18 ~i~~ly~~y~~W 29 (38)
T PF13021_consen 18 RIRPLYEKYNDW 29 (38)
T ss_pred HHHHHHHHHHHH
Confidence 456677777665
No 119
>PF01388 ARID: ARID/BRIGHT DNA binding domain; InterPro: IPR001606 Members of the recently discovered ARID (AT-rich interaction domain; also known as BRIGHT domain)) family of DNA-binding proteins are found in fungi and invertebrate and vertebrate metazoans. ARID-encoding genes are involved in a variety of biological processes including embryonic development, cell lineage gene regulation and cell cycle control. Although the specific roles of this domain and of ARID-containing proteins in transcriptional regulation are yet to be elucidated, they include both positive and negative transcriptional regulation and a likely involvement in the modification of chromatin structure []. The basic structure of the ARID domain domain appears to be a series of six alpha-helices separated by beta-strands, loops, or turns, but the structured region may extend to an additional helix at either or both ends of the basic six. Based on primary sequence homology, they can be partitioned into three structural classes: Minimal ARID proteins that consist of a core domain formed by six alpha helices; ARID proteins that supplement the core domain with an N-terminal alpha-helix; and Extended-ARID proteins, which contain the core domain and additional alpha-helices at their N- and C-termini. The human SWI-SNF complex protein p270 is an ARID family member with non-sequence-specific DNA binding activity. The ARID consensus and other structural features are common to both p270 and yeast SWI1, suggesting that p270 is a human counterpart of SWI1 []. The approximately 100-residue ARID sequence is present in a series of proteins strongly implicated in the regulation of cell growth, development, and tissue-specific gene expression. Although about a dozen ARID proteins can be identified from database searches, to date, only Bright (a regulator of B-cell-specific gene expression), dead ringer (a Drosophila melanogaster gene product required for normal development), and MRF-2 (which represses expression from the Cytomegalovirus enhancer) have been analyzed directly in regard to their DNA binding properties. Each binds preferentially to AT-rich sites. In contrast, p270 shows no sequence preference in its DNA binding activity, thereby demonstrating that AT-rich binding is not an intrinsic property of ARID domains and that ARID family proteins may be involved in a wider range of DNA interactions [].; GO: 0003677 DNA binding, 0005622 intracellular; PDB: 1C20_A 1KQQ_A 2JRZ_A 2LM1_A 2YQE_A 2JXJ_A 2EH9_A 2CXY_A 2LI6_A 1KN5_A ....
Probab=20.98 E-value=1.4e+02 Score=17.67 Aligned_cols=21 Identities=24% Similarity=0.425 Sum_probs=9.8
Q ss_pred hccCCCCCH--HHHHHHHHHHHH
Q 034178 40 LEVDYDATE--EEIRSNYIRLAL 60 (102)
Q Consensus 40 Lgl~~~as~--~eIk~ayr~l~~ 60 (102)
||+++..+. ..|++.|.+...
T Consensus 67 lg~~~~~~~~~~~L~~~Y~~~L~ 89 (92)
T PF01388_consen 67 LGFPPSSTSAAQQLRQHYEKYLL 89 (92)
T ss_dssp TTS-TTSCHHHHHHHHHHHHHTH
T ss_pred hCCCCCCCcHHHHHHHHHHHHhH
Confidence 455554332 355555555443
No 120
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=20.92 E-value=2.1e+02 Score=20.99 Aligned_cols=33 Identities=21% Similarity=0.485 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhCh
Q 034178 48 EEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQEKNGS 90 (102)
Q Consensus 48 ~~eIk~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~ 90 (102)
.+.+...+.+++..+. .+.|..|.+||..|++.
T Consensus 181 ~~~ld~~l~~~~~~Fd----------~~~Y~~v~~AY~lLgk~ 213 (291)
T PF10475_consen 181 EEQLDSDLSKVCQDFD----------PDKYSKVQEAYQLLGKT 213 (291)
T ss_pred HHHHHHHHHHHHHhCC----------HHHHHHHHHHHHHHhhh
Confidence 3446666666666553 37788999999999975
No 121
>smart00362 RRM_2 RNA recognition motif.
Probab=20.79 E-value=1e+02 Score=15.83 Aligned_cols=21 Identities=19% Similarity=0.414 Sum_probs=17.2
Q ss_pred hhccCCCCCHHHHHHHHHHHH
Q 034178 39 ILEVDYDATEEEIRSNYIRLA 59 (102)
Q Consensus 39 vLgl~~~as~~eIk~ayr~l~ 59 (102)
|-||++..+.++|+..+.+..
T Consensus 4 i~~l~~~~~~~~l~~~~~~~g 24 (72)
T smart00362 4 VGNLPPDVTEEDLKELFSKFG 24 (72)
T ss_pred EcCCCCcCCHHHHHHHHHhcC
Confidence 458888999999999887654
No 122
>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=20.78 E-value=32 Score=22.02 Aligned_cols=20 Identities=5% Similarity=-0.051 Sum_probs=17.0
Q ss_pred HHHHhhChhhHHHHHhcCCC
Q 034178 83 AYQEKNGSLILMVKIKFNQF 102 (102)
Q Consensus 83 Ay~~L~d~~~r~~~~~f~~~ 102 (102)
.+++|.|+..|+.-.+|..|
T Consensus 50 ~vnVL~d~eiR~~lk~~s~W 69 (105)
T COG0278 50 YVDVLQDPEIRQGLKEYSNW 69 (105)
T ss_pred EEeeccCHHHHhccHhhcCC
Confidence 34789999999999888877
No 123
>KOG0724 consensus Zuotin and related molecular chaperones (DnaJ superfamily), contains DNA-binding domains [Posttranslational modification, protein turnover, chaperones]
Probab=20.66 E-value=42 Score=25.02 Aligned_cols=57 Identities=14% Similarity=0.127 Sum_probs=35.7
Q ss_pred chhhccCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhChhhHHHHH
Q 034178 37 YKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQEKNGSLILMVKI 97 (102)
Q Consensus 37 y~vLgl~~~as~~eIk~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~~~ 97 (102)
+..+.+.-......|++||.-+.. .||+...+. ...|..+..-|..+.+...+..+.
T Consensus 28 ~~~~~~~~~~~~k~i~ka~~i~~~-~~~~~t~~~---~~~~~~~l~~~~~~~~~~~~~~~~ 84 (335)
T KOG0724|consen 28 YEKLSLWTEEEFKKIEKALAILDD-DEPRRTPDS---WDKFAEALPLEKRLEDKIEEYIGL 84 (335)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHhc-cccccchhh---hhHHHhcCccccccchhHHhhhhh
Confidence 444555555667889999999988 889887763 234544444445555554444433
No 124
>PF13337 Lon_2: Putative ATP-dependent Lon protease
Probab=20.44 E-value=2.7e+02 Score=22.43 Aligned_cols=35 Identities=9% Similarity=0.153 Sum_probs=25.4
Q ss_pred hhhccCCCC---CHHHHHHHHHHHHHHhCCCCCCCchH
Q 034178 38 KILEVDYDA---TEEEIRSNYIRLALKWHPDKQKDRDC 72 (102)
Q Consensus 38 ~vLgl~~~a---s~~eIk~ayr~l~~~~HPD~~~~~~~ 72 (102)
+.+.++.++ +...|++-...+.|..|||..-.+++
T Consensus 386 ~~~~lg~~~~~RD~~AV~kt~SgllKLL~P~~~~~~ee 423 (457)
T PF13337_consen 386 KYFKLGSNLSQRDTKAVKKTVSGLLKLLFPHGEFTKEE 423 (457)
T ss_pred hhEeeCCCcchhhHHHHHHHHHHHHHhhCCCCCCCHHH
Confidence 344566554 45668999999999999997666543
No 125
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=20.40 E-value=96 Score=18.88 Aligned_cols=20 Identities=30% Similarity=0.331 Sum_probs=17.7
Q ss_pred hhccCCCCCHHHHHHHHHHH
Q 034178 39 ILEVDYDATEEEIRSNYIRL 58 (102)
Q Consensus 39 vLgl~~~as~~eIk~ayr~l 58 (102)
.+-|++.|+..+||+|..++
T Consensus 25 ~F~V~~~anK~eIK~AvE~l 44 (84)
T PRK14548 25 TFIVDRRATKPDIKRAVEEL 44 (84)
T ss_pred EEEECCCCCHHHHHHHHHHH
Confidence 46789999999999999887
No 126
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=20.38 E-value=1.6e+02 Score=20.16 Aligned_cols=25 Identities=24% Similarity=0.240 Sum_probs=20.7
Q ss_pred hHHHHHHHHHHHHHHHhhChhhHHH
Q 034178 71 DCATSRFQEINEAYQEKNGSLILMV 95 (102)
Q Consensus 71 ~~a~~~f~~i~~Ay~~L~d~~~r~~ 95 (102)
++.+.....|.++.++|.||.++.+
T Consensus 62 eEetkrLa~ireeLE~l~dP~RkEv 86 (159)
T PF04949_consen 62 EEETKRLAEIREELEVLADPMRKEV 86 (159)
T ss_pred HHHHHHHHHHHHHHHhhccchHHHH
Confidence 3477889999999999999986654
Done!