Query 034178
Match_columns 102
No_of_seqs 181 out of 1043
Neff 7.6
Searched_HMMs 29240
Date Mon Mar 25 18:10:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034178.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034178hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2dn9_A DNAJ homolog subfamily 99.9 4.2E-25 1.4E-29 133.5 8.5 71 31-101 4-74 (79)
2 2och_A Hypothetical protein DN 99.9 5E-25 1.7E-29 131.5 7.8 69 30-101 4-72 (73)
3 1hdj_A Human HSP40, HDJ-1; mol 99.9 1.1E-24 3.8E-29 131.1 8.3 68 33-101 2-69 (77)
4 2ctp_A DNAJ homolog subfamily 99.9 1.3E-24 4.6E-29 131.1 7.6 70 31-101 4-73 (78)
5 2cug_A Mkiaa0962 protein; DNAJ 99.9 2.5E-24 8.5E-29 132.7 8.7 70 31-101 14-83 (88)
6 2ej7_A HCG3 gene; HCG3 protein 99.9 2E-24 6.9E-29 131.3 7.8 70 32-101 7-77 (82)
7 2ctr_A DNAJ homolog subfamily 99.9 3.4E-24 1.2E-28 132.1 8.4 68 32-100 5-72 (88)
8 2ctw_A DNAJ homolog subfamily 99.9 4.3E-24 1.5E-28 136.5 8.8 70 31-100 14-83 (109)
9 2ctq_A DNAJ homolog subfamily 99.9 2E-24 6.8E-29 138.6 7.2 70 31-100 17-86 (112)
10 2o37_A Protein SIS1; HSP40, J- 99.9 6.7E-24 2.3E-28 131.8 7.3 68 30-100 4-71 (92)
11 2yua_A Williams-beuren syndrom 99.9 1E-23 3.5E-28 132.5 7.9 69 31-99 14-82 (99)
12 2dmx_A DNAJ homolog subfamily 99.9 1.2E-23 4E-28 130.5 7.9 70 32-101 7-77 (92)
13 2lgw_A DNAJ homolog subfamily 99.9 1.4E-23 4.9E-28 132.2 8.0 67 34-100 2-69 (99)
14 2qsa_A DNAJ homolog DNJ-2; J-d 99.9 1.9E-23 6.6E-28 133.2 6.6 73 29-101 10-86 (109)
15 2ys8_A RAB-related GTP-binding 99.9 4.4E-23 1.5E-27 127.8 8.0 76 18-94 11-86 (90)
16 1bq0_A DNAJ, HSP40; chaperone, 99.9 4E-24 1.4E-28 135.2 3.2 69 33-101 2-70 (103)
17 1wjz_A 1700030A21RIK protein; 99.9 1.8E-23 6.3E-28 129.8 6.1 70 31-100 13-88 (94)
18 3apq_A DNAJ homolog subfamily 99.9 1.2E-22 4.1E-27 140.4 7.3 68 34-101 2-69 (210)
19 2l6l_A DNAJ homolog subfamily 99.9 1E-21 3.6E-26 131.9 7.1 70 31-100 7-82 (155)
20 1faf_A Large T antigen; J doma 99.8 2E-21 6.7E-26 117.8 4.5 62 34-100 11-74 (79)
21 1gh6_A Large T antigen; tumor 99.8 1.4E-22 4.8E-27 130.6 -0.7 65 33-101 7-73 (114)
22 3hho_A CO-chaperone protein HS 99.8 7E-21 2.4E-25 130.4 7.4 67 32-98 2-75 (174)
23 3lz8_A Putative chaperone DNAJ 99.8 2.9E-22 1E-26 148.8 0.0 77 23-100 17-93 (329)
24 2pf4_E Small T antigen; PP2A, 99.8 7.2E-22 2.5E-26 135.4 0.2 65 33-101 10-76 (174)
25 1iur_A KIAA0730 protein; DNAJ 99.8 5.8E-21 2E-25 118.0 4.1 62 32-93 14-76 (88)
26 1fpo_A HSC20, chaperone protei 99.8 2.4E-20 8.1E-25 127.5 6.4 65 35-99 2-73 (171)
27 3bvo_A CO-chaperone protein HS 99.8 5.6E-20 1.9E-24 129.0 8.5 68 31-98 40-114 (207)
28 1n4c_A Auxilin; four helix bun 99.8 3.1E-20 1.1E-24 128.0 3.7 63 34-96 117-182 (182)
29 2guz_A Mitochondrial import in 99.8 4.7E-20 1.6E-24 109.6 3.4 58 32-93 12-70 (71)
30 2qwo_B Putative tyrosine-prote 99.8 7.9E-20 2.7E-24 113.7 3.9 66 24-89 22-91 (92)
31 3apo_A DNAJ homolog subfamily 99.8 5.9E-20 2E-24 146.7 1.9 73 29-101 16-88 (780)
32 3ag7_A Putative uncharacterize 99.8 1.8E-19 6.1E-24 114.7 3.5 60 31-91 38-104 (106)
33 3uo3_A J-type CO-chaperone JAC 99.7 5.8E-19 2E-23 121.6 4.4 65 31-98 8-79 (181)
34 2guz_B Mitochondrial import in 99.3 1.3E-12 4.6E-17 76.2 4.0 54 34-91 4-60 (65)
35 2y4t_A DNAJ homolog subfamily 99.3 4.7E-12 1.6E-16 92.3 5.0 67 32-98 380-449 (450)
36 2pzi_A Probable serine/threoni 93.5 0.081 2.8E-06 41.5 4.5 50 29-86 624-675 (681)
37 2cqn_A Formin-binding protein 68.7 14 0.00047 21.3 5.0 55 44-99 4-61 (77)
38 1qqr_A Streptokinase domain B; 52.4 7.5 0.00026 25.1 1.9 32 35-66 33-64 (138)
39 2b7e_A PRE-mRNA processing pro 45.4 37 0.0013 18.6 4.9 48 49-99 3-55 (59)
40 4a3n_A Transcription factor SO 41.5 41 0.0014 18.0 4.8 40 52-96 14-53 (71)
41 2d7l_A WD repeat and HMG-box D 39.5 52 0.0018 18.7 4.2 43 52-98 17-59 (81)
42 1ug2_A 2610100B20RIK gene prod 39.1 20 0.00068 21.6 2.2 24 45-68 67-90 (95)
43 2cs1_A PMS1 protein homolog 1; 34.3 66 0.0023 18.3 4.3 41 52-97 19-59 (92)
44 2eqz_A High mobility group pro 34.1 64 0.0022 18.1 4.9 41 53-96 28-68 (86)
45 1ckt_A High mobility group 1 p 32.4 61 0.0021 17.3 5.1 41 53-96 14-54 (71)
46 2lxi_A RNA-binding protein 10; 32.3 38 0.0013 19.0 2.7 20 40-59 7-26 (91)
47 1hry_A Human SRY; DNA, DNA-bin 32.3 64 0.0022 17.5 4.6 39 52-95 16-54 (76)
48 3f27_D Transcription factor SO 31.9 68 0.0023 17.7 5.2 39 52-95 18-56 (83)
49 1wgf_A Upstream binding factor 31.1 76 0.0026 18.0 4.7 40 53-97 33-72 (90)
50 2nqb_D Histone H2B; nucleosome 31.0 69 0.0024 20.1 3.9 17 54-70 38-54 (123)
51 2crj_A SWI/SNF-related matrix- 30.9 77 0.0026 18.0 5.2 40 53-97 20-59 (92)
52 3nm9_A HMG-D, high mobility gr 30.3 69 0.0024 17.3 5.0 33 52-89 15-47 (73)
53 1vq8_S 50S ribosomal protein L 29.7 33 0.0011 20.1 2.1 21 39-59 26-46 (85)
54 1tzy_B Histone H2B; histone-fo 29.1 78 0.0027 20.0 3.9 17 54-70 41-57 (126)
55 2e6o_A HMG box-containing prot 28.6 83 0.0028 17.7 4.7 39 52-95 29-67 (87)
56 1wz6_A HMG-box transcription f 28.6 79 0.0027 17.5 4.5 40 52-96 19-58 (82)
57 3r8s_T 50S ribosomal protein L 27.6 37 0.0013 20.2 2.1 20 39-58 31-50 (93)
58 1uzc_A Hypothetical protein FL 27.1 88 0.003 17.5 4.9 22 45-66 11-32 (71)
59 1i11_A Transcription factor SO 27.1 85 0.0029 17.3 4.3 38 53-95 17-54 (81)
60 1gt0_D Transcription factor SO 27.0 84 0.0029 17.2 3.8 38 53-95 15-52 (80)
61 3j21_T 50S ribosomal protein L 26.8 40 0.0014 19.8 2.1 20 39-58 27-46 (86)
62 2zjr_Q 50S ribosomal protein L 26.4 40 0.0014 20.1 2.1 21 39-59 26-46 (95)
63 2co9_A Thymus high mobility gr 25.6 1.1E+02 0.0036 17.9 4.2 39 53-96 30-68 (102)
64 3tq6_A Transcription factor A, 25.5 1.5E+02 0.0052 19.7 5.2 41 53-98 22-62 (214)
65 1iqt_A AUF1, heterogeneous nuc 25.5 63 0.0022 16.9 2.8 20 40-59 5-24 (75)
66 1hme_A High mobility group pro 25.5 88 0.003 16.9 5.5 39 53-96 19-57 (77)
67 3tve_T 50S ribosomal protein L 25.1 44 0.0015 19.8 2.1 20 39-58 25-44 (92)
68 3rh2_A Hypothetical TETR-like 24.7 1.3E+02 0.0044 18.7 4.6 44 43-89 169-212 (212)
69 2yrq_A High mobility group pro 24.6 1.4E+02 0.0048 18.9 5.6 43 52-97 27-69 (173)
70 3tmm_A Transcription factor A, 24.5 1.6E+02 0.0054 20.0 5.2 42 52-98 53-94 (238)
71 3cxb_A Protein SIFA; SIFA, SKI 24.3 1.1E+02 0.0037 22.4 4.3 31 52-82 44-74 (336)
72 1j46_A SRY, sex-determining re 24.2 1E+02 0.0035 17.2 4.2 39 52-95 16-54 (85)
73 2lef_A LEF-1 HMG, protein (lym 23.5 1E+02 0.0036 17.1 4.3 39 52-95 14-52 (86)
74 3u2b_C Transcription factor SO 23.3 99 0.0034 16.8 4.8 39 52-95 14-52 (79)
75 1q38_A Fibronectin; amyloid fi 23.2 35 0.0012 20.2 1.3 19 29-47 32-50 (89)
76 3hm5_A DNA methyltransferase 1 23.2 68 0.0023 19.1 2.7 20 45-64 66-85 (93)
77 1k99_A Upstream binding factor 23.1 1.2E+02 0.0041 17.6 4.3 40 53-97 23-62 (99)
78 4euw_A Transcription factor SO 22.8 1.3E+02 0.0043 17.7 4.3 39 52-95 41-79 (106)
79 2ov6_A V-type ATP synthase sub 21.0 40 0.0014 20.1 1.3 26 36-61 14-42 (101)
80 2i4r_A V-type ATP synthase sub 20.9 59 0.002 19.5 2.1 27 35-61 22-51 (102)
81 4iej_A DNA methyltransferase 1 20.6 83 0.0028 18.8 2.7 18 45-62 66-83 (93)
82 2jss_A Chimera of histone H2B. 20.4 1.8E+02 0.0063 19.2 4.7 18 54-71 8-25 (192)
83 2lr8_A CAsp8-associated protei 25.7 22 0.00074 20.3 0.0 22 45-66 47-68 (70)
No 1
>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.92 E-value=4.2e-25 Score=133.48 Aligned_cols=71 Identities=32% Similarity=0.544 Sum_probs=66.3
Q ss_pred cCCCCcchhhccCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhChhhHHHHHhcCC
Q 034178 31 AKPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQEKNGSLILMVKIKFNQ 101 (102)
Q Consensus 31 ~~~~~~y~vLgl~~~as~~eIk~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~~~~f~~ 101 (102)
....++|+||||+++++.++||++||++++++|||++++.+.+.+.|+.|++||++|+||.+|..||.+|.
T Consensus 4 ~~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~g~ 74 (79)
T 2dn9_A 4 GSSGDYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDEVKRKQYDAYGS 74 (79)
T ss_dssp SCCSCHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCSSCTTHHHHHHHHHHHHHHHHSHHHHHHHHHSCC
T ss_pred CCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhccC
Confidence 35679999999999999999999999999999999998765689999999999999999999999999984
No 2
>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A
Probab=99.92 E-value=5e-25 Score=131.51 Aligned_cols=69 Identities=30% Similarity=0.561 Sum_probs=63.1
Q ss_pred hcCCCCcchhhccCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhChhhHHHHHhcCC
Q 034178 30 LAKPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQEKNGSLILMVKIKFNQ 101 (102)
Q Consensus 30 ~~~~~~~y~vLgl~~~as~~eIk~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~~~~f~~ 101 (102)
+....+||+||||+++++.++||++|+++++++|||++++. .+.|+.|++||++|+||..|..||++|.
T Consensus 4 m~~~~~~y~iLgl~~~a~~~eIk~ayr~l~~~~HPD~~~~~---~~~f~~i~~Ay~~L~d~~~R~~YD~~g~ 72 (73)
T 2och_A 4 MVKETGYYDVLGVKPDASDNELKKAYRKMALKFHPDKNPDG---AEQFKQISQAYEVLSDEKKRQIYDQGGE 72 (73)
T ss_dssp --CCCCHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCTTC---HHHHHHHHHHHHHHTSHHHHHHHHHTC-
T ss_pred ccCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCcCH---HHHHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence 45678999999999999999999999999999999999863 6899999999999999999999999995
No 3
>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1
Probab=99.91 E-value=1.1e-24 Score=131.11 Aligned_cols=68 Identities=37% Similarity=0.615 Sum_probs=64.1
Q ss_pred CCCcchhhccCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhChhhHHHHHhcCC
Q 034178 33 PKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQEKNGSLILMVKIKFNQ 101 (102)
Q Consensus 33 ~~~~y~vLgl~~~as~~eIk~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~~~~f~~ 101 (102)
..+||+||||+++++.++||++|+++++++|||+++++. +.+.|+.|++||++|+||..|..||.+|.
T Consensus 2 ~~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPD~~~~~~-~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~ 69 (77)
T 1hdj_A 2 GKDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPG-AEEKFKEIAEAYDVLSDPRKREIFDRYGE 69 (77)
T ss_dssp CCCSHHHHTCCTTCCHHHHHHHHHHHHHTTCTTTCCCTT-HHHHHHHHHHHHHHTTCHHHHHHHHHTCG
T ss_pred CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcc-HHHHHHHHHHHHHHHCCHHHHHHHHHHcc
Confidence 368999999999999999999999999999999998754 88999999999999999999999999984
No 4
>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.91 E-value=1.3e-24 Score=131.05 Aligned_cols=70 Identities=36% Similarity=0.544 Sum_probs=65.5
Q ss_pred cCCCCcchhhccCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhChhhHHHHHhcCC
Q 034178 31 AKPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQEKNGSLILMVKIKFNQ 101 (102)
Q Consensus 31 ~~~~~~y~vLgl~~~as~~eIk~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~~~~f~~ 101 (102)
....++|+||||+++++.++||++|+++++++|||+++.+ .+.+.|+.|++||++|+||..|..||++|.
T Consensus 4 ~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~-~~~~~f~~i~~Ay~~L~d~~~R~~YD~~~~ 73 (78)
T 2ctp_A 4 GSSGDYYEILGVSRGASDEDLKKAYRRLALKFHPDKNHAP-GATEAFKAIGTAYAVLSNPEKRKQYDQFGS 73 (78)
T ss_dssp SCSCCHHHHHTCCTTCCHHHHHHHHHHHHTTSCTTTCSSH-HHHHHHHHHHHHHHHHTSHHHHHHHHHTCS
T ss_pred CCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc-cHHHHHHHHHHHHHHHCCHHHHHHHHHcCc
Confidence 3567999999999999999999999999999999999875 489999999999999999999999999984
No 5
>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus}
Probab=99.91 E-value=2.5e-24 Score=132.74 Aligned_cols=70 Identities=33% Similarity=0.517 Sum_probs=65.7
Q ss_pred cCCCCcchhhccCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhChhhHHHHHhcCC
Q 034178 31 AKPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQEKNGSLILMVKIKFNQ 101 (102)
Q Consensus 31 ~~~~~~y~vLgl~~~as~~eIk~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~~~~f~~ 101 (102)
....|||+||||+++++.++||++||++++++|||+++.+. +.+.|+.|++||++|+||..|..||.||.
T Consensus 14 ~~~~d~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~-~~~~f~~i~~Ay~~L~d~~~R~~YD~~g~ 83 (88)
T 2cug_A 14 ALDFDPYRVLGVSRTASQADIKKAYKKLAREWHPDKNKDPG-AEDRFIQISKAYEILSNEEKRTNYDHYGS 83 (88)
T ss_dssp SSSSCHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTCCSTT-HHHHHHHHHHHHHHHHSHHHHHHHHHHTT
T ss_pred cCCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCChh-HHHHHHHHHHHHHHHCCHHHHHHHHHcCC
Confidence 35679999999999999999999999999999999998754 89999999999999999999999999985
No 6
>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.91 E-value=2e-24 Score=131.28 Aligned_cols=70 Identities=34% Similarity=0.628 Sum_probs=65.4
Q ss_pred CCCCcchhhccCCCCCHHHHHHHHHHHHHHhCCCCCCCc-hHHHHHHHHHHHHHHHhhChhhHHHHHhcCC
Q 034178 32 KPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDR-DCATSRFQEINEAYQEKNGSLILMVKIKFNQ 101 (102)
Q Consensus 32 ~~~~~y~vLgl~~~as~~eIk~ayr~l~~~~HPD~~~~~-~~a~~~f~~i~~Ay~~L~d~~~r~~~~~f~~ 101 (102)
...++|+||||+++++.++||++|+++++++|||+++.. +.+.+.|+.|++||++|+||..|..||.||.
T Consensus 7 ~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~g~ 77 (82)
T 2ej7_A 7 GMVDYYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSDAKKRDIYDRYGS 77 (82)
T ss_dssp SSCCHHHHTTCCTTCCHHHHHHHHHHHHTTSCTTTCSTTHHHHHHHHHHHHHHHHHHSSTTHHHHHHHTCC
T ss_pred CCcCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHHCCHHHHHHHHHcCc
Confidence 457999999999999999999999999999999999875 3588999999999999999999999999984
No 7
>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.91 E-value=3.4e-24 Score=132.11 Aligned_cols=68 Identities=34% Similarity=0.527 Sum_probs=64.3
Q ss_pred CCCCcchhhccCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhChhhHHHHHhcC
Q 034178 32 KPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQEKNGSLILMVKIKFN 100 (102)
Q Consensus 32 ~~~~~y~vLgl~~~as~~eIk~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~~~~f~ 100 (102)
...+||+||||+++++.++||++||++++++|||+++.+ .+.+.|+.|++||++|+||..|..||.+|
T Consensus 5 ~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~-~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~ 72 (88)
T 2ctr_A 5 SSGSYYDILGVPKSASERQIKKAFHKLAMKYHPDKNKSP-DAEAKFREIAEAYETLSDANRRKEYDTLG 72 (88)
T ss_dssp CCCSHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCCSH-HHHHHHHHHHHHHHHHHSSHHHHHHHHTC
T ss_pred CCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCh-HHHHHHHHHHHHHHHHCCHHHHHHHHHhC
Confidence 467999999999999999999999999999999999864 48999999999999999999999999987
No 8
>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.91 E-value=4.3e-24 Score=136.48 Aligned_cols=70 Identities=33% Similarity=0.529 Sum_probs=66.2
Q ss_pred cCCCCcchhhccCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhChhhHHHHHhcC
Q 034178 31 AKPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQEKNGSLILMVKIKFN 100 (102)
Q Consensus 31 ~~~~~~y~vLgl~~~as~~eIk~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~~~~f~ 100 (102)
....++|+||||+++++.++||++||+|++++|||++++.+.+.+.|++|++||++|+||.+|..||.+|
T Consensus 14 ~~~~~~Y~vLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~g 83 (109)
T 2ctw_A 14 TSGESLYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAHAILTDATKRNIYDKYG 83 (109)
T ss_dssp SCSCCHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTSTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHTC
T ss_pred CCCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHcCHHHHHHHHHhc
Confidence 4567999999999999999999999999999999999876678999999999999999999999999987
No 9
>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.91 E-value=2e-24 Score=138.58 Aligned_cols=70 Identities=24% Similarity=0.327 Sum_probs=65.8
Q ss_pred cCCCCcchhhccCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhChhhHHHHHhcC
Q 034178 31 AKPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQEKNGSLILMVKIKFN 100 (102)
Q Consensus 31 ~~~~~~y~vLgl~~~as~~eIk~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~~~~f~ 100 (102)
....|||+||||+++++.++||++||++++++|||++++.+.+.+.|++|++||++|+||..|..||.+|
T Consensus 17 ~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~ 86 (112)
T 2ctq_A 17 EDTEDYYTLLGCDELSSVEQILAEFKVRALECHPDKHPENPKAVETFQKLQKAKEILTNEESRARYDHWR 86 (112)
T ss_dssp CCCCCHHHHTTCCTTSCHHHHHHHHHHHHHTTCTTTCTTCSTHHHHHHHHHHHHHHHHSHHHHHHHHHHH
T ss_pred cCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHHHhh
Confidence 4568999999999999999999999999999999999865568999999999999999999999999986
No 10
>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae}
Probab=99.90 E-value=6.7e-24 Score=131.83 Aligned_cols=68 Identities=32% Similarity=0.552 Sum_probs=63.5
Q ss_pred hcCCCCcchhhccCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhChhhHHHHHhcC
Q 034178 30 LAKPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQEKNGSLILMVKIKFN 100 (102)
Q Consensus 30 ~~~~~~~y~vLgl~~~as~~eIk~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~~~~f~ 100 (102)
+....++|+||||+++++.++||++|+++++++|||++++. .+.|++|++||++|+||.+|..||++|
T Consensus 4 m~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~---~~~f~~i~~Ay~~L~d~~~R~~YD~~~ 71 (92)
T 2o37_A 4 MVKETKLYDLLGVSPSANEQELKKGYRKAALKYHPDKPTGD---TEKFKEISEAFEILNDPQKREIYDQYG 71 (92)
T ss_dssp CCSCCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCTTSTTCC---HHHHHHHHHHHHHHTSHHHHHHHHHHC
T ss_pred cccCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCh---HHHHHHHHHHHHHHCCHHHHHHHHHHC
Confidence 44678999999999999999999999999999999999874 579999999999999999999999987
No 11
>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.90 E-value=1e-23 Score=132.54 Aligned_cols=69 Identities=25% Similarity=0.372 Sum_probs=64.8
Q ss_pred cCCCCcchhhccCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhChhhHHHHHhc
Q 034178 31 AKPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQEKNGSLILMVKIKF 99 (102)
Q Consensus 31 ~~~~~~y~vLgl~~~as~~eIk~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~~~~f 99 (102)
....+||+||||+++++.++||++||+|++++|||++++.+.+.+.|+.|++||++|+||.+|..||+.
T Consensus 14 ~~~~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~ 82 (99)
T 2yua_A 14 YSRTALYDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGSAEAAERFTRISQAYVVLGSATLRRKYDRG 82 (99)
T ss_dssp SCSSHHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTCSSCSHHHHHHHHHHHHHHHTTSHHHHHHHHHT
T ss_pred CCccCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHh
Confidence 456799999999999999999999999999999999987666899999999999999999999999984
No 12
>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.90 E-value=1.2e-23 Score=130.52 Aligned_cols=70 Identities=33% Similarity=0.562 Sum_probs=65.1
Q ss_pred CCCCcchhhccCCCCCHHHHHHHHHHHHHHhCCCCCCCc-hHHHHHHHHHHHHHHHhhChhhHHHHHhcCC
Q 034178 32 KPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDR-DCATSRFQEINEAYQEKNGSLILMVKIKFNQ 101 (102)
Q Consensus 32 ~~~~~y~vLgl~~~as~~eIk~ayr~l~~~~HPD~~~~~-~~a~~~f~~i~~Ay~~L~d~~~r~~~~~f~~ 101 (102)
...+||+||||+++++.++||++||+|++++|||+++.. +.+.+.|+.|++||++|+||..|..||.+|.
T Consensus 7 ~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~ 77 (92)
T 2dmx_A 7 GMANYYEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSDSKKRSLYDRAGC 77 (92)
T ss_dssp CCCCHHHHHTCCTTCCTTHHHHHHHHHHHHTCTTTCSSCSHHHHHHHHHHHHHHHHHHSHHHHHHHHHHCS
T ss_pred CCcCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCccHHHHHHHHHHHHHHHHHHCCHHHHHHHHHhCc
Confidence 456999999999999999999999999999999999864 4588999999999999999999999999984
No 13
>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens}
Probab=99.90 E-value=1.4e-23 Score=132.17 Aligned_cols=67 Identities=34% Similarity=0.663 Sum_probs=63.3
Q ss_pred CCcchhhccCCCCCHHHHHHHHHHHHHHhCCCCCCCc-hHHHHHHHHHHHHHHHhhChhhHHHHHhcC
Q 034178 34 KDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDR-DCATSRFQEINEAYQEKNGSLILMVKIKFN 100 (102)
Q Consensus 34 ~~~y~vLgl~~~as~~eIk~ayr~l~~~~HPD~~~~~-~~a~~~f~~i~~Ay~~L~d~~~r~~~~~f~ 100 (102)
.|||+||||+++++.++||++||++++++|||+++.. +.+.+.|+.|++||++|+||.+|..||.+|
T Consensus 2 ~d~Y~iLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~~~a~~~f~~I~~AY~vL~d~~~R~~YD~~g 69 (99)
T 2lgw_A 2 ASYYEILDVPRSASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHKREIYDRYG 69 (99)
T ss_dssp CCHHHHSSSCTTSCHHHHHHHHHHHHHHTSTTTCCSCCHHHHHHHHHHHHHHHHHHSHHHHHHHHHHH
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCccHHHHHHHHHHHHHHHHHHCCHHHHHHHHHhC
Confidence 5899999999999999999999999999999999865 458899999999999999999999999987
No 14
>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans}
Probab=99.89 E-value=1.9e-23 Score=133.21 Aligned_cols=73 Identities=26% Similarity=0.385 Sum_probs=66.7
Q ss_pred hhcCCCCcchhhccCCCC-CHHHHHHHHHHHHHHhCCCCCCC---chHHHHHHHHHHHHHHHhhChhhHHHHHhcCC
Q 034178 29 LLAKPKDYYKILEVDYDA-TEEEIRSNYIRLALKWHPDKQKD---RDCATSRFQEINEAYQEKNGSLILMVKIKFNQ 101 (102)
Q Consensus 29 ~~~~~~~~y~vLgl~~~a-s~~eIk~ayr~l~~~~HPD~~~~---~~~a~~~f~~i~~Ay~~L~d~~~r~~~~~f~~ 101 (102)
......++|+||||++++ +.++||++||++++++|||++++ .+.+.+.|++|++||++|+||.+|..||.+|.
T Consensus 10 ~~~~~~~~y~iLgv~~~a~s~~eIk~aYr~l~~~~HPDk~~~~~~~~~a~~~f~~i~~AY~~L~d~~~R~~YD~~~~ 86 (109)
T 2qsa_A 10 LYCGLENCYDVLEVNREEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYETLKDDEAKTNYDYYLD 86 (109)
T ss_dssp STTTTSCHHHHTTCCGGGCCHHHHHHHHHHHHHHTCGGGCCSHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHH
T ss_pred HHcCCCCHHHHcCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccccHHHHHHHHHHHHHHHHHCCHHHHHHHHHhcc
Confidence 345678999999999999 99999999999999999999987 35589999999999999999999999999873
No 15
>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.89 E-value=4.4e-23 Score=127.79 Aligned_cols=76 Identities=21% Similarity=0.277 Sum_probs=66.5
Q ss_pred ccccchhhhhhhhcCCCCcchhhccCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhChhhHH
Q 034178 18 QDSHVNFDFLSLLAKPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQEKNGSLILM 94 (102)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~y~vLgl~~~as~~eIk~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~ 94 (102)
..+...+.....+....++|+||||+++++.++||++||+|++++|||+++.+. +.+.|++|++||++|+||.+|.
T Consensus 11 ~~s~~~~~~~~~~~~~~~~y~iLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~-~~~~f~~i~~Ay~~L~d~~~R~ 86 (90)
T 2ys8_A 11 SFTKEQADAIRRIRNSKDSWDMLGVKPGASRDEVNKAYRKLAVLLHPDKCVAPG-SEDAFKAVVNARTALLKNIKSG 86 (90)
T ss_dssp CCCHHHHHHHHHHHTCSSHHHHHTCCTTCCHHHHHHHHHHHHHHHCTTTCCCTT-HHHHHHHHHHHHHHHHHHHCCS
T ss_pred CCCHHHHHHHHHHhcCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCcc-HHHHHHHHHHHHHHHCCccccc
Confidence 344455666666778899999999999999999999999999999999998754 8899999999999999998774
No 16
>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A
Probab=99.89 E-value=4e-24 Score=135.24 Aligned_cols=69 Identities=39% Similarity=0.630 Sum_probs=64.7
Q ss_pred CCCcchhhccCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhChhhHHHHHhcCC
Q 034178 33 PKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQEKNGSLILMVKIKFNQ 101 (102)
Q Consensus 33 ~~~~y~vLgl~~~as~~eIk~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~~~~f~~ 101 (102)
..+||+||||+++++.++||++||+|++++|||+++..+.+.+.|++|++||++|+||.+|..||.+|.
T Consensus 2 ~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~~~ 70 (103)
T 1bq0_A 2 KQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAAYDQYGH 70 (103)
T ss_dssp CCCSTTTTSSCSSCCHHHHHHHHHHHHTTTCTTTCTTTCTHHHHHHHHTTTTTSTTCSHHHHHTTTSTT
T ss_pred CCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHHHHhh
Confidence 468999999999999999999999999999999998655589999999999999999999999999984
No 17
>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1
Probab=99.89 E-value=1.8e-23 Score=129.84 Aligned_cols=70 Identities=27% Similarity=0.398 Sum_probs=64.4
Q ss_pred cCCCCcchhhccCCCCCHHHHHHHHHHHHHHhCCCCCCCc------hHHHHHHHHHHHHHHHhhChhhHHHHHhcC
Q 034178 31 AKPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDR------DCATSRFQEINEAYQEKNGSLILMVKIKFN 100 (102)
Q Consensus 31 ~~~~~~y~vLgl~~~as~~eIk~ayr~l~~~~HPD~~~~~------~~a~~~f~~i~~Ay~~L~d~~~r~~~~~f~ 100 (102)
....++|+||||+++++.++||++||++++++|||+++.. +.+.+.|++|++||++|+||.+|..||.+.
T Consensus 13 ~~~~~~y~iLgv~~~as~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l 88 (94)
T 1wjz_A 13 TLKKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNEETKKKYDLQR 88 (94)
T ss_dssp SSCSCHHHHTTCCTTCCHHHHHHHHHHTTSSSCSTTCCTTCCHHHHHHHHHHHHHHHHHHHHHSSSSHHHHHHHHS
T ss_pred CCCCChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCChhhhHHHHHHHHHHHHHHHHHCCHHHHHHHHHHc
Confidence 4578999999999999999999999999999999998742 458899999999999999999999999875
No 18
>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}
Probab=99.87 E-value=1.2e-22 Score=140.37 Aligned_cols=68 Identities=32% Similarity=0.517 Sum_probs=64.5
Q ss_pred CCcchhhccCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhChhhHHHHHhcCC
Q 034178 34 KDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQEKNGSLILMVKIKFNQ 101 (102)
Q Consensus 34 ~~~y~vLgl~~~as~~eIk~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~~~~f~~ 101 (102)
.|||+||||+++++.++||+|||++++++|||++++.+.+.+.|+.|++||++|+||..|..||++|.
T Consensus 2 ~~~y~~l~~~~~a~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~f~~i~~Ay~~L~~~~~r~~yd~~~~ 69 (210)
T 3apq_A 2 QNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKYDKYGE 69 (210)
T ss_dssp CCHHHHHTCCTTCCHHHHHHHHHHHHHHHCGGGCTTCTTHHHHHHHHHHHHHHHTSHHHHHHHHHHTT
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHhcc
Confidence 58999999999999999999999999999999998666689999999999999999999999999984
No 19
>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens}
Probab=99.85 E-value=1e-21 Score=131.87 Aligned_cols=70 Identities=27% Similarity=0.375 Sum_probs=63.6
Q ss_pred cCCCCcchhhccCCCCCHHHHHHHHHHHHHHhCCCCCCCch------HHHHHHHHHHHHHHHhhChhhHHHHHhcC
Q 034178 31 AKPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRD------CATSRFQEINEAYQEKNGSLILMVKIKFN 100 (102)
Q Consensus 31 ~~~~~~y~vLgl~~~as~~eIk~ayr~l~~~~HPD~~~~~~------~a~~~f~~i~~Ay~~L~d~~~r~~~~~f~ 100 (102)
....|||+||||+++++.++||++||++++++|||+++... .+.+.|+.|++||++|+||.+|..||.++
T Consensus 7 ~~~~~~y~iLgv~~~a~~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~a~~~f~~i~~Ay~~L~dp~~R~~Yd~~~ 82 (155)
T 2l6l_A 7 MPKKDWYSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKILGNEETKREYDLQR 82 (155)
T ss_dssp CCCSHHHHHHTCCTTCCHHHHHHHHHHHHHHHSCCCCCCCCTTHHHHHHHHHHHHHHHHHHHSSSHHHHCHHHHHH
T ss_pred CCCCChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCchhHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 35679999999999999999999999999999999988752 36799999999999999999999999754
No 20
>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1
Probab=99.83 E-value=2e-21 Score=117.83 Aligned_cols=62 Identities=16% Similarity=0.295 Sum_probs=57.2
Q ss_pred CCcchhhccCCC--CCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhChhhHHHHHhcC
Q 034178 34 KDYYKILEVDYD--ATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQEKNGSLILMVKIKFN 100 (102)
Q Consensus 34 ~~~y~vLgl~~~--as~~eIk~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~~~~f~ 100 (102)
.++|+||||+++ ++.++||++||+|++++|||++++ .+.|++|++||++|+|+..|.. +.||
T Consensus 11 ~~~y~iLgl~~~~~a~~~eIk~aYr~la~~~HPDk~~~----~~~f~~i~~AYe~L~~~~~r~~-~~~g 74 (79)
T 1faf_A 11 ERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGGS----HALMQELNSLWGTFKTEVYNLR-MNLG 74 (79)
T ss_dssp HHHHHHHTCCSSSTTCHHHHHHHHHHHHHHSSGGGSCC----HHHHHHHHHHHHHHHHHHHHHT-TCCS
T ss_pred HHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCC----HHHHHHHHHHHHHHhhHHHHHH-HhcC
Confidence 589999999999 999999999999999999999865 6899999999999999999877 5676
No 21
>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein; 3.20A {Simian virus 40} SCOP: a.2.3.1
Probab=99.83 E-value=1.4e-22 Score=130.64 Aligned_cols=65 Identities=18% Similarity=0.383 Sum_probs=60.6
Q ss_pred CCCcchhhccCCCCCH--HHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhChhhHHHHHhcCC
Q 034178 33 PKDYYKILEVDYDATE--EEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQEKNGSLILMVKIKFNQ 101 (102)
Q Consensus 33 ~~~~y~vLgl~~~as~--~eIk~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~~~~f~~ 101 (102)
..++|+||||+++++. ++||++||+|++++|||++++ .++|++|++||++|+||.+|..|+.||.
T Consensus 7 ~~~~Y~iLgv~~~as~~~~eIk~aYr~la~~~HPDk~~~----~e~f~~I~~AYevL~d~~~R~~~~~~~~ 73 (114)
T 1gh6_A 7 SLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGD----EEKMKKMNTLYKKMEDGVKYAHQPDFGG 73 (114)
T ss_dssp HHHHHHHTTCCTTSCSCHHHHHHHHHHTTTTCCTTTCCT----TTTTHHHHHHHHHHHHHHHSCCSSCCSC
T ss_pred hhhHHHHcCCCCCCCcCHHHHHHHHHHHHHHHCCCCCcc----HHHHHHHHHHHHHHCCHHHHHHhhhccc
Confidence 3589999999999998 999999999999999999876 5899999999999999999999998874
No 22
>3hho_A CO-chaperone protein HSCB homolog; structural genomics, IDP01304, center for structural genomics of infectious diseases, CSGI; 2.15A {Vibrio cholerae}
Probab=99.83 E-value=7e-21 Score=130.38 Aligned_cols=67 Identities=19% Similarity=0.326 Sum_probs=60.4
Q ss_pred CCCCcchhhccCCCCC--HHHHHHHHHHHHHHhCCCCCCCchH-----HHHHHHHHHHHHHHhhChhhHHHHHh
Q 034178 32 KPKDYYKILEVDYDAT--EEEIRSNYIRLALKWHPDKQKDRDC-----ATSRFQEINEAYQEKNGSLILMVKIK 98 (102)
Q Consensus 32 ~~~~~y~vLgl~~~as--~~eIk~ayr~l~~~~HPD~~~~~~~-----a~~~f~~i~~Ay~~L~d~~~r~~~~~ 98 (102)
...|||+||||+++++ .++||++||++++++|||++++... +.+.|..|++||++|+||.+|..||.
T Consensus 2 ~~~d~Y~iLgl~~~a~id~~eIk~aYr~l~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vL~dp~~R~~Yd~ 75 (174)
T 3hho_A 2 NAMNYFELFGLPIQFELDGSLLSSQFRALQKRFHPDNFATASERDRLMAVQQAAQINDAYQTLKDPLRRAEYLL 75 (174)
T ss_dssp --CCHHHHTTCCSSSCCCHHHHHHHHHHHHHHHCGGGSTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHH
T ss_pred CCCCHHHHcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHH
Confidence 3579999999999887 9999999999999999999887642 67899999999999999999999986
No 23
>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A
Probab=99.83 E-value=2.9e-22 Score=148.76 Aligned_cols=77 Identities=31% Similarity=0.422 Sum_probs=0.0
Q ss_pred hhhhhhhhcCCCCcchhhccCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhChhhHHHHHhcC
Q 034178 23 NFDFLSLLAKPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQEKNGSLILMVKIKFN 100 (102)
Q Consensus 23 ~~~~~~~~~~~~~~y~vLgl~~~as~~eIk~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~~~~f~ 100 (102)
++...+..+...|||+||||+++|+.++||+|||+|+++||||+++++ .+.++|++|++||++|+||.+|..||+|+
T Consensus 17 ~l~~~~~~m~~~d~Y~vLgv~~~as~~eIk~aYr~la~~~HPDk~~~~-~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~ 93 (329)
T 3lz8_A 17 NLYFQSNAMELKDYYAILGVQPTDDLKTIKTAYRRLARKYHPDVSKEN-DAEAKFKDLAEAWEVLKDEQRRAEYDQLW 93 (329)
T ss_dssp ------------------------------------------------------------------------------
T ss_pred ccccccccccccCHHHHcCcCCCCCHHHHHHHHHHHHHHHCCCCCCCh-HHHHHHHHHHHHHHHhhhhhhhcccchhh
Confidence 444445556678999999999999999999999999999999999875 48999999999999999999999999984
No 24
>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase regulat protein complex; 3.10A {Simian virus 40} PDB: 2pkg_C
Probab=99.82 E-value=7.2e-22 Score=135.37 Aligned_cols=65 Identities=18% Similarity=0.373 Sum_probs=58.1
Q ss_pred CCCcchhhccCCCCC--HHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhChhhHHHHHhcCC
Q 034178 33 PKDYYKILEVDYDAT--EEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQEKNGSLILMVKIKFNQ 101 (102)
Q Consensus 33 ~~~~y~vLgl~~~as--~~eIk~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~~~~f~~ 101 (102)
..++|+||||+++|+ .++||+|||++++++|||++++ .++|++|++||++|+||.+|..||+||.
T Consensus 10 ~~d~Y~vLGl~~~as~~~~eIKkAYRkLa~~~HPDk~~~----~e~F~~I~~AYevLsdp~kR~~YD~~G~ 76 (174)
T 2pf4_E 10 SLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGD----EEKMKKMNTLYKKMEDGVKYAHQPDFGG 76 (174)
T ss_dssp HHHHHHTTTCCGGGTTCHHHHHHHHHHHGGGCSCC---C----CTTTTHHHHHHHHHHHHHHHHTSCGGGG
T ss_pred cccHHHHcCCCCCCCcCHHHHHHHHHHHHHHHCcCCCCC----HHHHHHHHHHHHHhCCHHHHHHHhccCC
Confidence 358999999999998 6999999999999999999876 4799999999999999999999999994
No 25
>1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1
Probab=99.82 E-value=5.8e-21 Score=118.01 Aligned_cols=62 Identities=27% Similarity=0.449 Sum_probs=56.7
Q ss_pred CCCCcchhhccCCCCCHHHHHHHHHHHHHHhCCCCCCCc-hHHHHHHHHHHHHHHHhhChhhH
Q 034178 32 KPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDR-DCATSRFQEINEAYQEKNGSLIL 93 (102)
Q Consensus 32 ~~~~~y~vLgl~~~as~~eIk~ayr~l~~~~HPD~~~~~-~~a~~~f~~i~~Ay~~L~d~~~r 93 (102)
...++|+||||+++++.++||++||+|+++||||++++. +.+.+.|+.|++||++|+|...|
T Consensus 14 ~~~~~y~vLgv~~~as~~eIKkaYrkla~~~HPDk~~~~~~~a~~~F~~I~~AYevL~~~~~r 76 (88)
T 1iur_A 14 ILKEVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRLEKQAFL 76 (88)
T ss_dssp CHHHHHHHHHHTTSSCSHHHHHHHHHHHHHTCTTTSSSCHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred cHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHHHHhhccc
Confidence 446899999999999999999999999999999999875 45899999999999999998765
No 26
>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1
Probab=99.81 E-value=2.4e-20 Score=127.48 Aligned_cols=65 Identities=20% Similarity=0.329 Sum_probs=60.0
Q ss_pred CcchhhccCCCC--CHHHHHHHHHHHHHHhCCCCCCCch-----HHHHHHHHHHHHHHHhhChhhHHHHHhc
Q 034178 35 DYYKILEVDYDA--TEEEIRSNYIRLALKWHPDKQKDRD-----CATSRFQEINEAYQEKNGSLILMVKIKF 99 (102)
Q Consensus 35 ~~y~vLgl~~~a--s~~eIk~ayr~l~~~~HPD~~~~~~-----~a~~~f~~i~~Ay~~L~d~~~r~~~~~f 99 (102)
|||+||||++++ +..+||++||++++++|||++++.. .+.+.|+.|++||++|+||.+|..|+..
T Consensus 2 d~y~lLgl~~~a~i~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vL~dp~~R~~Yd~~ 73 (171)
T 1fpo_A 2 DYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRHPLMRAEYLLS 73 (171)
T ss_dssp HHHHHTTCCSSSCCCHHHHHHHHHHHHHHTCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHH
T ss_pred CHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHH
Confidence 799999999998 9999999999999999999988753 3568999999999999999999999974
No 27
>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}
Probab=99.81 E-value=5.6e-20 Score=128.97 Aligned_cols=68 Identities=18% Similarity=0.327 Sum_probs=60.6
Q ss_pred cCCCCcchhhccCCC--CCHHHHHHHHHHHHHHhCCCCCCCch-----HHHHHHHHHHHHHHHhhChhhHHHHHh
Q 034178 31 AKPKDYYKILEVDYD--ATEEEIRSNYIRLALKWHPDKQKDRD-----CATSRFQEINEAYQEKNGSLILMVKIK 98 (102)
Q Consensus 31 ~~~~~~y~vLgl~~~--as~~eIk~ayr~l~~~~HPD~~~~~~-----~a~~~f~~i~~Ay~~L~d~~~r~~~~~ 98 (102)
....|||+||||+++ ++..+||++||+|++++|||++++.. .+.+.|+.|++||++|+||.+|..|+.
T Consensus 40 ~~~~d~y~lLgv~~~~~a~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vLsdp~~R~~Yd~ 114 (207)
T 3bvo_A 40 DPTRDYFSLMDCNRSFRVDTAKLQHRYQQLQRLVHPDFFSQRSQTEKDFSEKHSTLVNDAYKTLLAPLSRGLYLL 114 (207)
T ss_dssp CTTCCHHHHTTSCSCSCCCHHHHHHHHHHHHHHHCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHH
T ss_pred CCCCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
Confidence 346799999999986 79999999999999999999988642 367889999999999999999999973
No 28
>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP: a.2.3.1 PDB: 1xi5_J
Probab=99.79 E-value=3.1e-20 Score=128.03 Aligned_cols=63 Identities=24% Similarity=0.287 Sum_probs=58.2
Q ss_pred CCcchhhccCCCCCHHHHHHHHHHHHHHhCCCCCCCch---HHHHHHHHHHHHHHHhhChhhHHHH
Q 034178 34 KDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRD---CATSRFQEINEAYQEKNGSLILMVK 96 (102)
Q Consensus 34 ~~~y~vLgl~~~as~~eIk~ayr~l~~~~HPD~~~~~~---~a~~~f~~i~~Ay~~L~d~~~r~~~ 96 (102)
.++|+||||++.++.++||++||++++++|||++++.. .+.+.|+.|++||++|+||..|..|
T Consensus 117 ~d~Y~vLgv~~~As~~eIKkAYRklal~~HPDK~~~~~~e~~A~~~F~~I~eAYevLsD~~kR~~Y 182 (182)
T 1n4c_A 117 ETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQGQKPLY 182 (182)
T ss_dssp CCCCCCCCGGGGSSHHHHHHHHHHHHHHTCGGGGSSCTTHHHHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred cchhhcCCCCCCCCHHHHHHHHHHHHHHHCcCcCCCcchHHHHHHHHHHHHHHHHHHCCHHhhhhC
Confidence 69999999999999999999999999999999988653 2789999999999999999998764
No 29
>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=99.79 E-value=4.7e-20 Score=109.59 Aligned_cols=58 Identities=24% Similarity=0.235 Sum_probs=52.1
Q ss_pred CCCCcchhhccCC-CCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhChhhH
Q 034178 32 KPKDYYKILEVDY-DATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQEKNGSLIL 93 (102)
Q Consensus 32 ~~~~~y~vLgl~~-~as~~eIk~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r 93 (102)
...++|+||||++ +++.++||++||+|++++|||++++ .+.|++|++||++|+++..|
T Consensus 12 ~~~~~y~iLgl~~~~a~~~eIk~ayr~l~~~~HPDk~g~----~~~f~~i~~Aye~L~~~~~r 70 (71)
T 2guz_A 12 NSKEALQILNLTENTLTKKKLKEVHRKIMLANHPDKGGS----PFLATKINEAKDFLEKRGIS 70 (71)
T ss_dssp CHHHHHHHTTCCTTTCCHHHHHHHHHHHHHHHCGGGTCC----HHHHHHHHHHHHHHHHHCCC
T ss_pred CHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHCCCCCCC----HHHHHHHHHHHHHHhhhhhc
Confidence 3458999999999 7999999999999999999999754 57999999999999998655
No 30
>2qwo_B Putative tyrosine-protein phosphatase auxilin; chaperone-cochaperone complex, ATP-binding, nucleotide-bindi nucleus, phosphorylation, stress response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B* 2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A
Probab=99.78 E-value=7.9e-20 Score=113.73 Aligned_cols=66 Identities=21% Similarity=0.284 Sum_probs=56.0
Q ss_pred hhhhhhhcCC-CCcchhhccCCCCCHHHHHHHHHHHHHHhCCCCCCCch---HHHHHHHHHHHHHHHhhC
Q 034178 24 FDFLSLLAKP-KDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRD---CATSRFQEINEAYQEKNG 89 (102)
Q Consensus 24 ~~~~~~~~~~-~~~y~vLgl~~~as~~eIk~ayr~l~~~~HPD~~~~~~---~a~~~f~~i~~Ay~~L~d 89 (102)
+.....+... .++|++|||++.++.++||+|||++++++|||++++.+ .|.+.|+.|++||++|.+
T Consensus 22 L~~l~~~L~~~~~~y~~Lgv~~~as~~eIKkAYRklal~~HPDK~~~~~~~~~A~~~F~~i~eAyevL~~ 91 (92)
T 2qwo_B 22 LSTMHTVLWAGETKWKPVGMADLVTPEQVKKVYRKAVLVVHPCKATGQPYEQYAKMIFMELNDAWSEFEN 91 (92)
T ss_dssp HHHGGGTSCTTCCSCCCCCGGGSSSHHHHHHHHHHHHHHTCHHHHTTSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcccccCCeecCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchhHhHHHHHHHHHHHHHHHHHh
Confidence 3344444444 58999999999999999999999999999999988653 478999999999999975
No 31
>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}
Probab=99.77 E-value=5.9e-20 Score=146.67 Aligned_cols=73 Identities=30% Similarity=0.446 Sum_probs=40.8
Q ss_pred hhcCCCCcchhhccCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhChhhHHHHHhcCC
Q 034178 29 LLAKPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQEKNGSLILMVKIKFNQ 101 (102)
Q Consensus 29 ~~~~~~~~y~vLgl~~~as~~eIk~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~~~~f~~ 101 (102)
......|||+||||+++|+.++||+|||++++++|||++++.+.+.+.|++|++||++|+||.+|..||+||.
T Consensus 16 ~~~~~~~~y~~lg~~~~a~~~~i~~ay~~l~~~~hpd~~~~~~~~~~~f~~i~~ay~~L~~~~~r~~yd~~~~ 88 (780)
T 3apo_A 16 EGRHDQNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKYDKYGE 88 (780)
T ss_dssp -------CHHHHTCCTTCCHHHHHHHHCC-----------------------CTHHHHHHSHHHHHHHTTC--
T ss_pred CCCCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHHcChHHHHHHHhhcc
Confidence 3445679999999999999999999999999999999997666689999999999999999999999999984
No 32
>3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like J-domain containing protein, JAC1, chloroplast accumulation response; 1.80A {Arabidopsis thaliana}
Probab=99.76 E-value=1.8e-19 Score=114.72 Aligned_cols=60 Identities=23% Similarity=0.298 Sum_probs=52.9
Q ss_pred cCCCCcchhhccCCCCCHHHHHHHHHHHHHHhCCCCCCCc-------hHHHHHHHHHHHHHHHhhChh
Q 034178 31 AKPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDR-------DCATSRFQEINEAYQEKNGSL 91 (102)
Q Consensus 31 ~~~~~~y~vLgl~~~as~~eIk~ayr~l~~~~HPD~~~~~-------~~a~~~f~~i~~Ay~~L~d~~ 91 (102)
....+||+|||++. |+.++||+|||++++++|||+++++ ..|.++|+.|++||++|+|+.
T Consensus 38 ~~~~d~Y~vl~~~~-As~~eIKkAYRklal~~HPDK~~~~~~~~e~~~~A~~~F~~I~~AYevLsd~~ 104 (106)
T 3ag7_A 38 WSGSGWKPVPLMDM-IEGNAVRKSYQRALLILHPDKLQQKGASANQKYMAEKVFELLQEAWDHFNTLG 104 (106)
T ss_dssp CTTSCCCCCCGGGS-CSHHHHHHHHHHHHHHHCHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred cccCCHHHHcCCCC-CCHHHHHHHHHHHHHHHCcCcCCCcccchhhHHHHHHHHHHHHHHHHHHcCcc
Confidence 44579999999996 9999999999999999999997642 147899999999999999984
No 33
>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A
Probab=99.75 E-value=5.8e-19 Score=121.60 Aligned_cols=65 Identities=17% Similarity=0.364 Sum_probs=59.5
Q ss_pred cCCCCcchhh------ccCC-CCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhChhhHHHHHh
Q 034178 31 AKPKDYYKIL------EVDY-DATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQEKNGSLILMVKIK 98 (102)
Q Consensus 31 ~~~~~~y~vL------gl~~-~as~~eIk~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~~~~ 98 (102)
....|||+|| |+++ +++..+||++||+|++++|||++++ +.+.|+.|++||++|+||.+|..||.
T Consensus 8 ~~~~d~y~ll~~~~p~~~~~~~a~~~eIk~aYr~la~~~HPDk~~~---a~~~f~~i~~AY~vL~dp~~R~~Yd~ 79 (181)
T 3uo3_A 8 RFTSTFYELFPKTFPKKLPIWTIDQSRLRKEYRQLQAQHHPDMAQQ---GSEQSSTLNQAYHTLKDPLRRSQYML 79 (181)
T ss_dssp CCSCCTGGGCTTTCTTCSCCSCCCHHHHHHHHHHHHHTCCTTSCCS---CSSGGGSHHHHHHHHHSHHHHHHHHH
T ss_pred CCCCCHHHHhccccccCCCCCCCCHHHHHHHHHHHHHHhCcCCCcc---HHHHHHHHHHHHHHHcChHHHHHHHH
Confidence 4567999999 4665 8999999999999999999999987 67899999999999999999999997
No 34
>2guz_B Mitochondrial import inner membrane translocase subunit TIM16; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=99.31 E-value=1.3e-12 Score=76.21 Aligned_cols=54 Identities=15% Similarity=0.108 Sum_probs=47.9
Q ss_pred CCcchhhccCCC---CCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhChh
Q 034178 34 KDYYKILEVDYD---ATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQEKNGSL 91 (102)
Q Consensus 34 ~~~y~vLgl~~~---as~~eIk~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~ 91 (102)
...|.||||+++ ++.++|+++||+|....|||+.++ .....+|++|++.|....
T Consensus 4 ~EA~~ILgv~~~~~~a~~~~Ik~~yr~Lm~~nhPDkGGS----~yl~~ki~~Ake~l~~~~ 60 (65)
T 2guz_B 4 DESCKILNIEESKGDLNMDKINNRFNYLFEVNDKEKGGS----FYLQSKVYRAAERLKWEL 60 (65)
T ss_dssp HHHHHHTTCCGGGTCCSHHHHHHHHHHHHHHTCGGGTCC----HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCCcCcCCHHHHHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHHHHHHH
Confidence 357899999999 999999999999999999999875 577889999999997653
No 35
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.25 E-value=4.7e-12 Score=92.31 Aligned_cols=67 Identities=33% Similarity=0.525 Sum_probs=57.3
Q ss_pred CCCCcchhhccCCCCCHHHHHHHHHHHHHHhCCCCCCCc---hHHHHHHHHHHHHHHHhhChhhHHHHHh
Q 034178 32 KPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDR---DCATSRFQEINEAYQEKNGSLILMVKIK 98 (102)
Q Consensus 32 ~~~~~y~vLgl~~~as~~eIk~ayr~l~~~~HPD~~~~~---~~a~~~f~~i~~Ay~~L~d~~~r~~~~~ 98 (102)
...++|.+||+...++.++|+++|+++++.+|||+.+.+ ..+.+.|+.|.+||++|+||.+|..||+
T Consensus 380 ~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r~~yd~ 449 (450)
T 2y4t_A 380 QKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMRKKFDD 449 (450)
T ss_dssp HSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC-----
T ss_pred cchhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHHHhccC
Confidence 456899999999999999999999999999999999875 3588999999999999999999999996
No 36
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=93.50 E-value=0.081 Score=41.53 Aligned_cols=50 Identities=14% Similarity=0.132 Sum_probs=38.0
Q ss_pred hhcCCCCcchhhccCCCCCH--HHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHH
Q 034178 29 LLAKPKDYYKILEVDYDATE--EEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQE 86 (102)
Q Consensus 29 ~~~~~~~~y~vLgl~~~as~--~eIk~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~ 86 (102)
......++|.+||++-+... .+|+++||++++.-+++ .+++..|..|..+
T Consensus 624 ~~~~~~~~~~~lG~~~~~~~lr~~~~~ayr~la~~~~~~--------~~r~~lvd~a~~v 675 (681)
T 2pzi_A 624 LKDNKASTNHILGFPFTSHGLRLGVEASLRSLARVAPTQ--------RHRYTLVDMANKV 675 (681)
T ss_dssp HTSCCCSSSEETTEESSHHHHHHHHHHHHHHHHHHCSSH--------HHHHHHHHHHHHH
T ss_pred HHccCCCCcccCCCCCChHHHHHHHHHHHHHHHHhCCCh--------HHHHHHHHHhccc
Confidence 34566779999999765544 67999999999976553 4778888888765
No 37
>2cqn_A Formin-binding protein 3; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1
Probab=68.72 E-value=14 Score=21.27 Aligned_cols=55 Identities=13% Similarity=0.081 Sum_probs=38.4
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCCCCCc--hHHHHHHHHHHHHHHHhhCh-hhHHHHHhc
Q 034178 44 YDATEEEIRSNYIRLALKWHPDKQKDR--DCATSRFQEINEAYQEKNGS-LILMVKIKF 99 (102)
Q Consensus 44 ~~as~~eIk~ayr~l~~~~HPD~~~~~--~~a~~~f~~i~~Ay~~L~d~-~~r~~~~~f 99 (102)
...-+..++..|+.+.+...|...... +.+...|..-. +|..+.++ .++.+++.|
T Consensus 4 ~~~r~rrl~~~F~~mLk~~~p~I~~~s~We~vr~~~e~~~-~fkav~~E~eR~~lFeeY 61 (77)
T 2cqn_A 4 GSSGMKRKESAFKSMLKQAAPPIELDAVWEDIRERFVKEP-AFEDITLESERKRIFKDF 61 (77)
T ss_dssp CCCSHHHHHHHHHHHHHTCSSCCCTTCCHHHHHHHHTTSH-HHHTCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHccCH-HHHhcCCHHHHHHHHHHH
Confidence 344567899999999999887666554 44566666555 79999775 455566655
No 38
>1qqr_A Streptokinase domain B; non-proteolytic, plasminogen activation, fibrinolysis, hydrolase activator; 2.30A {Streptococcus dysgalactiae subsp} SCOP: d.15.5.1 PDB: 1c4p_A
Probab=52.42 E-value=7.5 Score=25.10 Aligned_cols=32 Identities=22% Similarity=0.237 Sum_probs=28.0
Q ss_pred CcchhhccCCCCCHHHHHHHHHHHHHHhCCCC
Q 034178 35 DYYKILEVDYDATEEEIRSNYIRLALKWHPDK 66 (102)
Q Consensus 35 ~~y~vLgl~~~as~~eIk~ayr~l~~~~HPD~ 66 (102)
-++..|.|....+.+|++++=..+..++||+-
T Consensus 33 ~~l~~k~ig~~Its~eL~~~AqeiL~q~hp~Y 64 (138)
T 1qqr_A 33 KLLKTLAIGDTITSQELLAQAQSILNKNHPGY 64 (138)
T ss_dssp EEEEEECTTCEEEHHHHHHHHHHHHHHHSTTE
T ss_pred hhhcccccCcccCHHHHHHHHHHHHHhcCCCc
Confidence 34677888888999999999999999999985
No 39
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=45.39 E-value=37 Score=18.61 Aligned_cols=48 Identities=15% Similarity=0.144 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHhCCCCCCCchHHHHHHHHH---HHHHHHhhC-hh-hHHHHHhc
Q 034178 49 EEIRSNYIRLALKWHPDKQKDRDCATSRFQEI---NEAYQEKNG-SL-ILMVKIKF 99 (102)
Q Consensus 49 ~eIk~ayr~l~~~~HPD~~~~~~~a~~~f~~i---~~Ay~~L~d-~~-~r~~~~~f 99 (102)
+|...+|.+|.+...=|..-. =++.++.| ..-|.+|.| |. +.++++.|
T Consensus 3 eEae~aF~~lL~~~~V~s~ws---weqamr~i~i~DPrY~al~d~~~eRK~~Fe~Y 55 (59)
T 2b7e_A 3 MEAEKEFITMLKENQVDSTWS---FSRIISELGTRDPRYWMVDDDPLWKKEMFEKY 55 (59)
T ss_dssp THHHHHHHHHHHHTTCCSSCC---HHHHHHHHHHHCTHHHHSCCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCCCCCc---HHHHHHHhccCCCccccccCCHHHHHHHHHHH
Confidence 577889999988774444433 34556666 358999996 76 44556655
No 40
>4a3n_A Transcription factor SOX-17; 2.40A {Homo sapiens} SCOP: a.21.1.0
Probab=41.51 E-value=41 Score=17.97 Aligned_cols=40 Identities=5% Similarity=-0.029 Sum_probs=29.5
Q ss_pred HHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhChhhHHHH
Q 034178 52 RSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQEKNGSLILMVK 96 (102)
Q Consensus 52 k~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~~ 96 (102)
.+.+|...+.-||+.. ..+..+.|.+.|..|++..+....
T Consensus 14 ~~~~r~~~~~~~p~~~-----~~eisk~lg~~Wk~ls~~eK~~y~ 53 (71)
T 4a3n_A 14 AKDERKRLAQQNPDLH-----NAELSKMLGKSWKALTLAEKRPFV 53 (71)
T ss_dssp HHHHHHHHHTTCTTSC-----HHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHH
Confidence 4566777777788765 467888899999999887655443
No 41
>2d7l_A WD repeat and HMG-box DNA binding protein 1; high mobility group box domain, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=39.47 E-value=52 Score=18.66 Aligned_cols=43 Identities=14% Similarity=-0.042 Sum_probs=32.4
Q ss_pred HHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhChhhHHHHHh
Q 034178 52 RSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQEKNGSLILMVKIK 98 (102)
Q Consensus 52 k~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~~~~ 98 (102)
-+.+|...+.-||+.. + ..+..+.|-+.|..|++..+....++
T Consensus 17 ~~e~R~~ik~~~P~~~-~---~~eisK~lge~Wk~ls~eeK~~y~~~ 59 (81)
T 2d7l_A 17 LEENRSNILSDNPDFS-D---EADIIKEGMIRFRVLSTEERKVWANK 59 (81)
T ss_dssp HHHHHHHHHHHCTTCC-S---HHHHHHHHHHHHSSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCc-h---hHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4566777788899986 2 46888999999999998776655443
No 42
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=39.08 E-value=20 Score=21.62 Aligned_cols=24 Identities=17% Similarity=0.274 Sum_probs=19.7
Q ss_pred CCCHHHHHHHHHHHHHHhCCCCCC
Q 034178 45 DATEEEIRSNYIRLALKWHPDKQK 68 (102)
Q Consensus 45 ~as~~eIk~ayr~l~~~~HPD~~~ 68 (102)
+-+.++|+.+|+.|++.+|--...
T Consensus 67 Nks~nqV~~RFq~Lm~Lf~~~~~~ 90 (95)
T 1ug2_A 67 NKTPVEVSHRFRELMQLFHTACES 90 (95)
T ss_dssp SCCHHHHHHHHHHHHHHHHHCSSS
T ss_pred cCCHHHHHHHHHHHHHHHHHHhcc
Confidence 468999999999999999865543
No 43
>2cs1_A PMS1 protein homolog 1; DNA mismatch repair protein PMS1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=34.34 E-value=66 Score=18.34 Aligned_cols=41 Identities=12% Similarity=0.009 Sum_probs=29.6
Q ss_pred HHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhChhhHHHHH
Q 034178 52 RSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQEKNGSLILMVKI 97 (102)
Q Consensus 52 k~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~~~ 97 (102)
.+..|...+.-||+.. ..+..+.|-+.|..|++..+....+
T Consensus 19 ~~~~r~~~~~~~p~~~-----~~eisk~lg~~Wk~ls~eeK~~y~~ 59 (92)
T 2cs1_A 19 VQDHRPQFLIENPKTS-----LEDATLQIEELWKTLSEEEKLKYEE 59 (92)
T ss_dssp HHHHHHHHHHHCCSSC-----HHHHHHHHHHHHHSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 3455666677789864 4688889999999998876655544
No 44
>2eqz_A High mobility group protein B3; HMG-box domain, mobility group protein 2A, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=34.08 E-value=64 Score=18.11 Aligned_cols=41 Identities=10% Similarity=0.037 Sum_probs=29.3
Q ss_pred HHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhChhhHHHH
Q 034178 53 SNYIRLALKWHPDKQKDRDCATSRFQEINEAYQEKNGSLILMVK 96 (102)
Q Consensus 53 ~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~~ 96 (102)
+..|...+.-||+...+ ..+..+.|.+.|..|++.......
T Consensus 28 ~~~r~~~k~~~p~~~~~---~~eisk~lg~~Wk~ls~~eK~~y~ 68 (86)
T 2eqz_A 28 QTCREEHKKKNPEVPVN---FAEFSKKCSERWKTMSGKEKSKFD 68 (86)
T ss_dssp HHHHHHHHHHCTTSCCC---HHHHHHHHHHHHHSSCHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCCc---HHHHHHHHHHHHHhCCHHHHHHHH
Confidence 45566666778987643 467888999999999887655443
No 45
>1ckt_A High mobility group 1 protein; high-mobility group domain, BENT DNA, protein-drug-DNA compl regulation-DNA complex; HET: DNA 5IU; 2.50A {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1j3x_A
Probab=32.40 E-value=61 Score=17.30 Aligned_cols=41 Identities=12% Similarity=0.050 Sum_probs=28.9
Q ss_pred HHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhChhhHHHH
Q 034178 53 SNYIRLALKWHPDKQKDRDCATSRFQEINEAYQEKNGSLILMVK 96 (102)
Q Consensus 53 ~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~~ 96 (102)
+..|...+.-||+...+ ..+..+.|.+.|..|++..+....
T Consensus 14 ~~~r~~~~~~~p~~~~~---~~eisk~lg~~Wk~ls~~eK~~y~ 54 (71)
T 1ckt_A 14 QTCREEHKKKHPDASVN---FSEFSKKCSERWKTMSAKEKGKFE 54 (71)
T ss_dssp HHHHHHHHHHCTTCCCC---HHHHHHHHHHHHHTCCTTTSHHHH
T ss_pred HHHHHHHHHHCCCCCCc---HHHHHHHHHHHHhhCCHHHHHHHH
Confidence 34455556678987643 468888999999999887655443
No 46
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=32.34 E-value=38 Score=19.03 Aligned_cols=20 Identities=25% Similarity=0.253 Sum_probs=17.7
Q ss_pred hccCCCCCHHHHHHHHHHHH
Q 034178 40 LEVDYDATEEEIRSNYIRLA 59 (102)
Q Consensus 40 Lgl~~~as~~eIk~ayr~l~ 59 (102)
=||+++++.++|+..|.+..
T Consensus 7 ~nLp~~~te~~l~~~F~~~G 26 (91)
T 2lxi_A 7 RMLPQAATEDDIRGQLQSHG 26 (91)
T ss_dssp ETCCSSCCHHHHHHHHHHHT
T ss_pred eCCCCCCCHHHHHHHHHHhC
Confidence 38999999999999998874
No 47
>1hry_A Human SRY; DNA, DNA-binding protein, DNA binding protein/DNA complex; HET: DNA; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1hrz_A*
Probab=32.30 E-value=64 Score=17.51 Aligned_cols=39 Identities=5% Similarity=-0.033 Sum_probs=26.9
Q ss_pred HHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhChhhHHH
Q 034178 52 RSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQEKNGSLILMV 95 (102)
Q Consensus 52 k~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~ 95 (102)
.+.+|...+.-||+... .+..+.|.+.|..|++..+...
T Consensus 16 ~~~~r~~~~~~~p~~~~-----~eisk~lg~~Wk~ls~~eK~~y 54 (76)
T 1hry_A 16 SRDQRRKMALENPRMRN-----SEISKQLGYQWKMLTEAEKWPF 54 (76)
T ss_dssp HHHHHHHHHHHCSCCSS-----SHHHHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHHCcCCCH-----HHHHHHHHhHHHhCCHHHHHHH
Confidence 35566666777898754 3667788888888877654443
No 48
>3f27_D Transcription factor SOX-17; protein-DNA complex, HMG domain, endodermal, activator, DNA- nucleus, transcription regulation, transcrip complex; HET: DNA; 2.75A {Mus musculus} SCOP: a.21.1.1 PDB: 2yul_A
Probab=31.89 E-value=68 Score=17.72 Aligned_cols=39 Identities=5% Similarity=-0.015 Sum_probs=29.3
Q ss_pred HHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhChhhHHH
Q 034178 52 RSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQEKNGSLILMV 95 (102)
Q Consensus 52 k~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~ 95 (102)
.+.+|..++.-||+.. ..+..+.|.+.|..|++......
T Consensus 18 ~~~~r~~~~~~~p~~~-----~~eisk~lg~~Wk~ls~~eK~~y 56 (83)
T 3f27_D 18 AKDERKRLAQQNPDLH-----NAELSKMLGKSWKALTLAEKRPF 56 (83)
T ss_dssp HHHHHHHHHHHCSSSC-----HHHHHHHHHHHHHHSCHHHHHHH
T ss_pred HHHHHHHHHHHCCCCC-----HHHHHHHHHHHHhcCCHHHHHHH
Confidence 4566777788899875 46788889999999987765444
No 49
>1wgf_A Upstream binding factor 1; transcription factor, DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.21.1.1
Probab=31.12 E-value=76 Score=18.03 Aligned_cols=40 Identities=8% Similarity=0.012 Sum_probs=29.6
Q ss_pred HHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhChhhHHHHH
Q 034178 53 SNYIRLALKWHPDKQKDRDCATSRFQEINEAYQEKNGSLILMVKI 97 (102)
Q Consensus 53 ~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~~~ 97 (102)
+..|...+.-||+.. ..+..+.|.+.|..|++.......+
T Consensus 33 ~~~r~~~k~~~P~~~-----~~eisk~lg~~Wk~ls~eeK~~Y~~ 72 (90)
T 1wgf_A 33 EEKRRQLQEERPELS-----ESELTRLLARMWNDLSEKKKAKYKA 72 (90)
T ss_dssp HHTHHHHHHHCTTSC-----HHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCC-----HHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 455666677789854 5688899999999999876655443
No 50
>2nqb_D Histone H2B; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_D*
Probab=31.02 E-value=69 Score=20.14 Aligned_cols=17 Identities=18% Similarity=0.198 Sum_probs=12.5
Q ss_pred HHHHHHHHhCCCCCCCc
Q 034178 54 NYIRLALKWHPDKQKDR 70 (102)
Q Consensus 54 ayr~l~~~~HPD~~~~~ 70 (102)
--++..++.|||..-..
T Consensus 38 YIyKVLKQVhpd~gISs 54 (123)
T 2nqb_D 38 YIYTVLKQVHPDTGISS 54 (123)
T ss_dssp HHHHHHHHHCTTCEECH
T ss_pred HHHHHHHHhCCCCCcCH
Confidence 34677788999976654
No 51
>2crj_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; structural DNA-binding protein BRAF35, DNA-bending; NMR {Mus musculus}
Probab=30.93 E-value=77 Score=18.05 Aligned_cols=40 Identities=8% Similarity=-0.061 Sum_probs=29.0
Q ss_pred HHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhChhhHHHHH
Q 034178 53 SNYIRLALKWHPDKQKDRDCATSRFQEINEAYQEKNGSLILMVKI 97 (102)
Q Consensus 53 ~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~~~ 97 (102)
+..|...+.-||+.. ..+..+.|.+.|..|++..+....+
T Consensus 20 ~~~r~~~~~~~p~~~-----~~eisk~lg~~Wk~ls~eeK~~Y~~ 59 (92)
T 2crj_A 20 NERREQIRTRHPDLP-----FPEITKMLGAEWSKLQPAEKQRYLD 59 (92)
T ss_dssp HHHHHHHHHHCTTCC-----HHHHHHHHHHHHHTCCTTHHHHHHH
T ss_pred HHHHHHHHHHCCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 556666677788854 4678888999999998877655433
No 52
>3nm9_A HMG-D, high mobility group protein D; DNA bending, non-sequence-specific, HMG chromosomal protein; HET: DNA; 2.85A {Drosophila melanogaster} SCOP: a.21.1.1 PDB: 1e7j_A* 1hma_A 1qrv_A*
Probab=30.26 E-value=69 Score=17.31 Aligned_cols=33 Identities=9% Similarity=0.012 Sum_probs=24.7
Q ss_pred HHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhC
Q 034178 52 RSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQEKNG 89 (102)
Q Consensus 52 k~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d 89 (102)
.+.+|...+.-||+.. ..+..+.|.+.|..|++
T Consensus 15 ~~~~r~~~~~~~p~~~-----~~eisk~lg~~Wk~ls~ 47 (73)
T 3nm9_A 15 LNSARESIKRENPGIK-----VTEVAKRGGELWRAMKD 47 (73)
T ss_dssp HHHHHHHHHHHSSSCC-----HHHHHHHHHHHHHHCSC
T ss_pred HHHHHHHHHHHCCCCC-----HHHHHHHHHHHHHcCCc
Confidence 3555666677788765 46788888889988887
No 53
>1vq8_S 50S ribosomal protein L23P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.12.1.1 PDB: 1vq4_S* 1vq5_S* 1vq6_S* 1vq7_S* 1s72_S* 1vq9_S* 1vqk_S* 1vql_S* 1vqm_S* 1vqn_S* 1vqo_S* 1vqp_S* 1yhq_S* 1yi2_S* 1yij_S* 1yit_S* 1yj9_S* 1yjn_S* 1yjw_S* 2otj_S* ...
Probab=29.74 E-value=33 Score=20.08 Aligned_cols=21 Identities=19% Similarity=0.137 Sum_probs=18.4
Q ss_pred hhccCCCCCHHHHHHHHHHHH
Q 034178 39 ILEVDYDATEEEIRSNYIRLA 59 (102)
Q Consensus 39 vLgl~~~as~~eIk~ayr~l~ 59 (102)
++-+++.|+..+||+|-.++-
T Consensus 26 ~F~V~~~AnK~qIK~ave~lf 46 (85)
T 1vq8_S 26 QFAVDDRASKGEVADAVEEQY 46 (85)
T ss_dssp EEEECTTCCHHHHHHHHHHHH
T ss_pred EEEECCCCCHHHHHHHHHHHh
Confidence 678999999999999988773
No 54
>1tzy_B Histone H2B; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_B 1hq3_B 2aro_B 2hio_B 3c9k_B 3azg_D 3a6n_D 3an2_D 3av1_D 3av2_D 3ayw_D 3aze_D 3azf_D 3afa_D 3azh_D 3azi_D 3azj_D 3azk_D 3azl_D 3azm_D ...
Probab=29.11 E-value=78 Score=19.99 Aligned_cols=17 Identities=18% Similarity=0.247 Sum_probs=12.5
Q ss_pred HHHHHHHHhCCCCCCCc
Q 034178 54 NYIRLALKWHPDKQKDR 70 (102)
Q Consensus 54 ayr~l~~~~HPD~~~~~ 70 (102)
--++..++.|||..-..
T Consensus 41 YIyKVLKQVhpd~gISs 57 (126)
T 1tzy_B 41 YVYKVLKQVHPDTGISS 57 (126)
T ss_dssp HHHHHHHHHCTTCEECH
T ss_pred HHHHHHHHhCCCCCcCH
Confidence 34677788999976654
No 55
>2e6o_A HMG box-containing protein 1; HMG-box domain, HMG-box transcription factor 1, high mobility group box transcription factor 1, structural genomics; NMR {Homo sapiens}
Probab=28.63 E-value=83 Score=17.69 Aligned_cols=39 Identities=10% Similarity=0.059 Sum_probs=28.2
Q ss_pred HHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhChhhHHH
Q 034178 52 RSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQEKNGSLILMV 95 (102)
Q Consensus 52 k~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~ 95 (102)
.+.+|..++.-||+.. ..+..+.|-+.|..|++..+...
T Consensus 29 ~~~~r~~~~~~~P~~~-----~~eisk~lg~~Wk~ls~eeK~~y 67 (87)
T 2e6o_A 29 AKKYRVEYTQMYPGKD-----NRAISVILGDRWKKMKNEERRMY 67 (87)
T ss_dssp HHHTHHHHHHHCTTSC-----HHHHHHHHHHHHHHSCHHHHHHH
T ss_pred HHHHHHHHHHHCCCCC-----HHHHHHHHHHHHhhCCHHHHHHH
Confidence 3556666777789854 46788889999999987765444
No 56
>1wz6_A HMG-box transcription factor BBX; bobby SOX homolog, HMG_BOX domain, structural genomics, NPPSFA, riken structural genomics/proteomics initiative; NMR {Mus musculus}
Probab=28.62 E-value=79 Score=17.46 Aligned_cols=40 Identities=8% Similarity=-0.040 Sum_probs=28.3
Q ss_pred HHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhChhhHHHH
Q 034178 52 RSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQEKNGSLILMVK 96 (102)
Q Consensus 52 k~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~~ 96 (102)
.+.+|...+.-||+... .+..+.|.+.|..|++..+....
T Consensus 19 ~~~~r~~~~~~~p~~~~-----~eisk~lg~~Wk~ls~~eK~~y~ 58 (82)
T 1wz6_A 19 CKRHRSLVRQEHPRLDN-----RGATKILADWWAVLDPKEKQKYT 58 (82)
T ss_dssp HHHHHHHHHHHCSSSCT-----THHHHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCH-----HHHHHHHHHHHhhCCHHHHHHHH
Confidence 35666777777898654 46777888889988877654443
No 57
>3r8s_T 50S ribosomal protein L23; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_T 3j19_T 2wwq_T 3oat_T* 3oas_T* 3ofd_T 3ofc_T 3ofr_T* 3ofz_T* 3og0_T 3ofq_T 3r8t_T 2j28_T 3e1b_M 3e1d_M 3iy9_T 3i1n_T 1p85_R 1p86_R 1vs8_T ...
Probab=27.55 E-value=37 Score=20.17 Aligned_cols=20 Identities=40% Similarity=0.582 Sum_probs=17.8
Q ss_pred hhccCCCCCHHHHHHHHHHH
Q 034178 39 ILEVDYDATEEEIRSNYIRL 58 (102)
Q Consensus 39 vLgl~~~as~~eIk~ayr~l 58 (102)
+|-|++.|+..+||+|-.++
T Consensus 31 ~F~V~~~AnK~eIK~AVE~l 50 (93)
T 3r8s_T 31 VLKVAKDATKAEIKAAVQKL 50 (93)
T ss_dssp EEEECSSCCHHHHHHHHHHH
T ss_pred EEEECCCCCHHHHHHHHHHH
Confidence 47899999999999998876
No 58
>1uzc_A Hypothetical protein FLJ21157; nuclear protein, structure, transcription, phosphopeptide recognition, RNA polymerase II carboxyl- terminal domain; NMR {Homo sapiens} SCOP: a.159.2.1 PDB: 2kzg_A 2lks_A 2l9v_A
Probab=27.13 E-value=88 Score=17.47 Aligned_cols=22 Identities=18% Similarity=0.111 Sum_probs=18.0
Q ss_pred CCCHHHHHHHHHHHHHHhCCCC
Q 034178 45 DATEEEIRSNYIRLALKWHPDK 66 (102)
Q Consensus 45 ~as~~eIk~ayr~l~~~~HPD~ 66 (102)
-++.++.+.+|+.|....+-+-
T Consensus 11 ~~t~eea~~~F~~LL~e~~V~~ 32 (71)
T 1uzc_A 11 WNTKEEAKQAFKELLKEKRVPS 32 (71)
T ss_dssp CCSHHHHHHHHHHHHHHTTCCT
T ss_pred CCCHHHHHHHHHHHHHHcCcCC
Confidence 4689999999999999885333
No 59
>1i11_A Transcription factor SOX-5; HMG BOX, DNA bending, DNA recognition, chromatin, DNA binding protein, DNA sequence specific, testis determining.; NMR {Mus musculus} SCOP: a.21.1.1
Probab=27.07 E-value=85 Score=17.28 Aligned_cols=38 Identities=11% Similarity=0.041 Sum_probs=27.0
Q ss_pred HHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhChhhHHH
Q 034178 53 SNYIRLALKWHPDKQKDRDCATSRFQEINEAYQEKNGSLILMV 95 (102)
Q Consensus 53 ~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~ 95 (102)
+.++..++.-||+.. ..+..+.|.+.|..|++..+...
T Consensus 17 ~~~r~~~~~~~p~~~-----~~eisk~lg~~Wk~ls~eeK~~y 54 (81)
T 1i11_A 17 KDERRKILQAFPDMH-----NSNISKILGSRWKAMTNLEKQPY 54 (81)
T ss_dssp HHHHHHHHTTCSSCC-----HHHHHHHHHHHHTTSCSGGGHHH
T ss_pred HHHHHHHHHHCCCCC-----HHHHHHHHHhhhhhCCHHHHHHH
Confidence 455666666788754 46788888999999988765443
No 60
>1gt0_D Transcription factor SOX-2; POU factors, SOX proteins; 2.6A {Mus musculus} SCOP: a.21.1.1 PDB: 2le4_A 1o4x_B
Probab=27.03 E-value=84 Score=17.22 Aligned_cols=38 Identities=5% Similarity=-0.021 Sum_probs=25.6
Q ss_pred HHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhChhhHHH
Q 034178 53 SNYIRLALKWHPDKQKDRDCATSRFQEINEAYQEKNGSLILMV 95 (102)
Q Consensus 53 ~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~ 95 (102)
+..|...+.-||+.. ..+..+.|.+.|..|++......
T Consensus 15 ~~~r~~~~~~~p~~~-----~~eisk~lg~~Wk~ls~eeK~~y 52 (80)
T 1gt0_D 15 RGQRRKMAQENPKMH-----NSEISKRLGAEWKLLSETEKRPF 52 (80)
T ss_dssp HHHHHHHHTTSTTSC-----HHHHHHHHHHHHTTSCHHHHHHH
T ss_pred HHHHHHHHHHCCCCC-----HHHHHHHHHHHHHhCCHHHHHHH
Confidence 445556666678753 46777888888888887655444
No 61
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=26.80 E-value=40 Score=19.78 Aligned_cols=20 Identities=25% Similarity=0.348 Sum_probs=18.0
Q ss_pred hhccCCCCCHHHHHHHHHHH
Q 034178 39 ILEVDYDATEEEIRSNYIRL 58 (102)
Q Consensus 39 vLgl~~~as~~eIk~ayr~l 58 (102)
++-|++.|+..+||+|-.++
T Consensus 27 ~F~Vd~~AnK~qIK~AVe~l 46 (86)
T 3j21_T 27 TFIVDRRATKQDIKRAVEEI 46 (86)
T ss_dssp EEEECTTCCHHHHHHHHHHH
T ss_pred EEEEcCCCCHHHHHHHHHHH
Confidence 47899999999999999887
No 62
>2zjr_Q 50S ribosomal protein L23; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.12.1.1 PDB: 1sm1_R* 2aar_R 2d3o_R 2zjp_Q* 2zjq_Q 1nkw_R 3cf5_Q* 3dll_Q* 3pio_Q* 3pip_Q* 1nwy_R* 1nwx_R* 1xbp_R* 1pnu_R 1pny_R 1vor_U 1vou_U 1vow_U 1voy_U 1vp0_U
Probab=26.39 E-value=40 Score=20.13 Aligned_cols=21 Identities=24% Similarity=0.147 Sum_probs=18.8
Q ss_pred hhccCCCCCHHHHHHHHHHHH
Q 034178 39 ILEVDYDATEEEIRSNYIRLA 59 (102)
Q Consensus 39 vLgl~~~as~~eIk~ayr~l~ 59 (102)
++-|++.|+..|||+|-.++-
T Consensus 26 ~F~V~~~anK~eIK~aVE~lf 46 (95)
T 2zjr_Q 26 SFWVSPKATKTEIKDAIQQAF 46 (95)
T ss_dssp EEEECSSCTHHHHHHHHHHHH
T ss_pred EEEEcCCCCHHHHHHHHHHHh
Confidence 789999999999999988773
No 63
>2co9_A Thymus high mobility group box protein TOX; TOX protein, HMG box domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=25.62 E-value=1.1e+02 Score=17.88 Aligned_cols=39 Identities=5% Similarity=-0.051 Sum_probs=26.5
Q ss_pred HHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhChhhHHHH
Q 034178 53 SNYIRLALKWHPDKQKDRDCATSRFQEINEAYQEKNGSLILMVK 96 (102)
Q Consensus 53 ~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~~ 96 (102)
+..|...+.-||+.. ..+..+.|-+.|..|++.......
T Consensus 30 ~~~r~~i~~~~P~~~-----~~eisk~lg~~Wk~ls~eeK~~Y~ 68 (102)
T 2co9_A 30 RDTQAAIKGQNPNAT-----FGEVSKIVASMWDGLGEEQKQVYK 68 (102)
T ss_dssp HHHHHHHHHHCTTSC-----HHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHCCCCC-----HHHHHHHHHHHHccCCHHHHHHHH
Confidence 445566666788764 467778888888888776654443
No 64
>3tq6_A Transcription factor A, mitochondrial; transcription, transcription regulation, mitochondrion; HET: DNA BRU 1PE; 2.45A {Homo sapiens}
Probab=25.49 E-value=1.5e+02 Score=19.74 Aligned_cols=41 Identities=15% Similarity=0.171 Sum_probs=29.6
Q ss_pred HHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhChhhHHHHHh
Q 034178 53 SNYIRLALKWHPDKQKDRDCATSRFQEINEAYQEKNGSLILMVKIK 98 (102)
Q Consensus 53 ~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~~~~ 98 (102)
+..|...+.-||+.. ..+..+.|.+.|..|++.......+.
T Consensus 22 ~~~r~~~k~~~P~~~-----~~eisk~lge~Wk~Ls~~EK~~y~~~ 62 (214)
T 3tq6_A 22 KEQLPIFKAQNPDAK-----TTELIRRIAQRWRELPDSKKKIYQDA 62 (214)
T ss_dssp HHHHHHHHHHCTTSC-----HHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCC-----HHHHHHHHHHHHHccCHHhhhHHHHH
Confidence 455666677789876 46888888889999888766655443
No 65
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=25.48 E-value=63 Score=16.85 Aligned_cols=20 Identities=25% Similarity=0.292 Sum_probs=17.1
Q ss_pred hccCCCCCHHHHHHHHHHHH
Q 034178 40 LEVDYDATEEEIRSNYIRLA 59 (102)
Q Consensus 40 Lgl~~~as~~eIk~ayr~l~ 59 (102)
=||+++++.++|+..|.+..
T Consensus 5 ~nLp~~~t~~~l~~~F~~~G 24 (75)
T 1iqt_A 5 GGLSPDTPEEKIREYFGGFG 24 (75)
T ss_dssp SCCCSSCCHHHHHHHHHHHS
T ss_pred eCCCCCCCHHHHHHHHHhcC
Confidence 37889999999999998863
No 66
>1hme_A High mobility group protein fragment-B; DNA-binding; NMR {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1hmf_A 1nhm_A 1nhn_A 1hsm_A 1hsn_A 1j3c_A 1j3d_A 2yqi_A
Probab=25.46 E-value=88 Score=16.94 Aligned_cols=39 Identities=13% Similarity=0.076 Sum_probs=28.6
Q ss_pred HHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhChhhHHHH
Q 034178 53 SNYIRLALKWHPDKQKDRDCATSRFQEINEAYQEKNGSLILMVK 96 (102)
Q Consensus 53 ~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~~ 96 (102)
+..|...+.-||+.. ..+..+.|.+.|..|++..+....
T Consensus 19 ~~~r~~~~~~~p~~~-----~~eisk~lg~~Wk~ls~~eK~~y~ 57 (77)
T 1hme_A 19 SEYRPKIKGEHPGLS-----IGDVAKKLGEMWNNTAADDKQPYE 57 (77)
T ss_dssp HHHHHHHHHHCTTCC-----HHHHHHHHHHHHHHSCGGGSHHHH
T ss_pred HHHHHHHHHHCCCCC-----HHHHHHHHHHHHHhCCHHHHHHHH
Confidence 455666667788754 568889999999999987655443
No 67
>3tve_T 50S ribosomal protein L23; RNA, ribosome, tRNA, translation, mRNA; 3.10A {Thermus thermophilus} PDB: 3pyr_T 3pyo_T 3pyv_T 3pyt_T 3tvh_T 1n88_A 1vsa_R 1vsp_R 2hgj_W 2hgq_W 2hgu_W 2j01_X 2j03_X 2jl6_X 2jl8_X 2v47_X 2v49_X 2wdi_X 2wdj_X 2wdl_X ...
Probab=25.14 E-value=44 Score=19.80 Aligned_cols=20 Identities=25% Similarity=0.169 Sum_probs=17.9
Q ss_pred hhccCCCCCHHHHHHHHHHH
Q 034178 39 ILEVDYDATEEEIRSNYIRL 58 (102)
Q Consensus 39 vLgl~~~as~~eIk~ayr~l 58 (102)
++-|++.|+..+||+|-.++
T Consensus 25 ~F~V~~~AnK~qIK~aVe~l 44 (92)
T 3tve_T 25 TFWVHPKATKTEIKNAVETA 44 (92)
T ss_dssp EEEECTTCCHHHHHHHHHHH
T ss_pred EEEECCCCCHHHHHHHHHHH
Confidence 57899999999999998876
No 68
>3rh2_A Hypothetical TETR-like transcriptional regulator; DNA/RNA-binding 3-helical bundle, structural genomics, joint for structural genomics; 2.42A {Shewanella amazonensis}
Probab=24.66 E-value=1.3e+02 Score=18.66 Aligned_cols=44 Identities=7% Similarity=0.275 Sum_probs=33.3
Q ss_pred CCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhC
Q 034178 43 DYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQEKNG 89 (102)
Q Consensus 43 ~~~as~~eIk~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d 89 (102)
....+.+++......+.....|-..+. ..+.|.++.++|.-+|+
T Consensus 169 ~~~~~~~~~~~~~~~~~~~l~~~l~~~---~~~~~~~~~~~~~~~~~ 212 (212)
T 3rh2_A 169 IATISKASLYEGLLRVLMIFKAYSTPD---SLANFDRLEQHFRSQSN 212 (212)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHTTBCHH---HHHHHHHHHHHHHHHC-
T ss_pred cccccHHHHHHHHHHHHHHHccccCHH---HHHHHHHHHHHHhhccC
Confidence 345688889888888888887755432 67889999999988764
No 69
>2yrq_A High mobility group protein B1; HMG box domain, DNA binding, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.60 E-value=1.4e+02 Score=18.94 Aligned_cols=43 Identities=12% Similarity=0.003 Sum_probs=31.0
Q ss_pred HHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhChhhHHHHH
Q 034178 52 RSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQEKNGSLILMVKI 97 (102)
Q Consensus 52 k~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~~~ 97 (102)
-+..|...+.-||+..-. ..+..+.|.+.|..|++.......+
T Consensus 27 ~~~~r~~~k~~~p~~~~~---~~eisk~lg~~Wk~ls~~eK~~y~~ 69 (173)
T 2yrq_A 27 VQTCREEHKKKHPDASVN---FSEFSKKCSERWKTMSAKEKGKFED 69 (173)
T ss_dssp HHHHHHHHHHHCTTCCCC---HHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCCC---HHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 355666677789996433 5688889999999998887655443
No 70
>3tmm_A Transcription factor A, mitochondrial; HMG, high mobility group, transcription, LSP1, mitochon transcription-DNA complex; HET: DNA; 2.50A {Homo sapiens}
Probab=24.51 E-value=1.6e+02 Score=19.99 Aligned_cols=42 Identities=14% Similarity=0.165 Sum_probs=30.7
Q ss_pred HHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhChhhHHHHHh
Q 034178 52 RSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQEKNGSLILMVKIK 98 (102)
Q Consensus 52 k~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~~~~ 98 (102)
-+..|...+.-||+.. ..+..+.|.+.|..|++.......+.
T Consensus 53 ~~e~r~~~k~~~P~~~-----~~eisk~lge~Wk~Ls~~EK~~y~~~ 94 (238)
T 3tmm_A 53 SKEQLPIFKAQNPDAK-----TTELIRRIAQRWRELPDSKKKIYQDA 94 (238)
T ss_dssp HHHHHHHHHHHSTTSC-----HHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCC-----HHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 3555666677799876 46888899999999988776655443
No 71
>3cxb_A Protein SIFA; SIFA, SKIP, complex, virulence, cytoplasm, membrane, polymorphism, signaling protein; 2.60A {Salmonella typhimurium} PDB: 3hw2_A
Probab=24.26 E-value=1.1e+02 Score=22.44 Aligned_cols=31 Identities=19% Similarity=0.157 Sum_probs=22.8
Q ss_pred HHHHHHHHHHhCCCCCCCchHHHHHHHHHHH
Q 034178 52 RSNYIRLALKWHPDKQKDRDCATSRFQEINE 82 (102)
Q Consensus 52 k~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~ 82 (102)
.+|..-+...+||+....++.....|.+|.+
T Consensus 44 aEAl~CI~eLcHp~~~~TrE~v~~~F~~LK~ 74 (336)
T 3cxb_A 44 AKADRCLHEMLFAERAPTRERLTEIFFELKE 74 (336)
T ss_dssp HHHHHHHHHHHSSSSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHH
Confidence 3677888889999988887656666665543
No 72
>1j46_A SRY, sex-determining region Y protein; MALE sex determining factor, SRY, sex-reversal mutation; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1j47_A
Probab=24.22 E-value=1e+02 Score=17.19 Aligned_cols=39 Identities=5% Similarity=-0.043 Sum_probs=26.7
Q ss_pred HHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhChhhHHH
Q 034178 52 RSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQEKNGSLILMV 95 (102)
Q Consensus 52 k~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~ 95 (102)
.+.+|..++.-||+.. ..+..+.|.+.|..|++......
T Consensus 16 ~~~~r~~~~~~~P~~~-----~~eisk~lg~~Wk~ls~eeK~~y 54 (85)
T 1j46_A 16 SRDQRRKMALENPRMR-----NSEISKQLGYQWKMLTEAEKWPF 54 (85)
T ss_dssp HHHHHHHHHHHSTTSC-----HHHHHHHHHHHHTTSCHHHHHHH
T ss_pred HHHHHHHHHHHCCCCC-----HHHHHHHHHHHHHHCCHHHHHHH
Confidence 3455666667788764 46777888888888877654433
No 73
>2lef_A LEF-1 HMG, protein (lymphoid enhancer-binding factor); LEF1, HMG, TCR-A, transcription factor; HET: DNA; NMR {Mus musculus} SCOP: a.21.1.1
Probab=23.53 E-value=1e+02 Score=17.13 Aligned_cols=39 Identities=5% Similarity=-0.114 Sum_probs=27.1
Q ss_pred HHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhChhhHHH
Q 034178 52 RSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQEKNGSLILMV 95 (102)
Q Consensus 52 k~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~ 95 (102)
.+..|...+.-||+.. ..+..+.|.+.|..|++......
T Consensus 14 ~~~~r~~~~~~~P~~~-----~~eisk~lg~~Wk~ls~eeK~~y 52 (86)
T 2lef_A 14 MKEMRANVVAESTLKE-----SAAINQILGRRWHALSREEQAKY 52 (86)
T ss_dssp HHHHHHHHHHHSSCCC-----HHHHHHHHHHHHTTSCHHHHHHH
T ss_pred HHHHHHHHHHHCCCCC-----HHHHHHHHHHHHhcCCHHHHHHH
Confidence 3455666677788863 46778888888888887665443
No 74
>3u2b_C Transcription factor SOX-4; HMG domain, transcriptional regulation, transcription-DNA CO; HET: DNA; 2.40A {Mus musculus} SCOP: a.21.1.1
Probab=23.35 E-value=99 Score=16.77 Aligned_cols=39 Identities=10% Similarity=0.056 Sum_probs=27.5
Q ss_pred HHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhChhhHHH
Q 034178 52 RSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQEKNGSLILMV 95 (102)
Q Consensus 52 k~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~ 95 (102)
.+.+|...+.-||+.. ..+..+.|.+.|..|++..+...
T Consensus 14 ~~~~r~~~~~~~p~~~-----~~eisk~lg~~Wk~ls~~eK~~y 52 (79)
T 3u2b_C 14 SQIERRKIMEQSPDMH-----NAEISKRLGKRWKLLKDSDKIPF 52 (79)
T ss_dssp HHHHHHHHHTTSTTSC-----HHHHHHHHHHHHHHSCHHHHHHH
T ss_pred HHHHHHHHHHHCcCCC-----HHHHHHHHHHHHHhCCHHHHHHH
Confidence 4556666777788764 46788888888888887665443
No 75
>1q38_A Fibronectin; amyloid fibril, anastellin, extracellular matrix, dynamic fluctuations, conformational exchange, chaps, cell adhesion; NMR {Homo sapiens} SCOP: b.1.2.1
Probab=23.22 E-value=35 Score=20.22 Aligned_cols=19 Identities=11% Similarity=0.111 Sum_probs=15.8
Q ss_pred hhcCCCCcchhhccCCCCC
Q 034178 29 LLAKPKDYYKILEVDYDAT 47 (102)
Q Consensus 29 ~~~~~~~~y~vLgl~~~as 47 (102)
.++...|-|.|.||.|+.+
T Consensus 32 ~IPgh~nSYtIsGLkPGvt 50 (89)
T 1q38_A 32 TIPGHLNSYTIKGLKPGVV 50 (89)
T ss_dssp EECSSSSCCCCCCCCTTCC
T ss_pred EcCCccceEEEeccCCCcE
Confidence 4567889999999999864
No 76
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=23.21 E-value=68 Score=19.10 Aligned_cols=20 Identities=15% Similarity=0.375 Sum_probs=16.7
Q ss_pred CCCHHHHHHHHHHHHHHhCC
Q 034178 45 DATEEEIRSNYIRLALKWHP 64 (102)
Q Consensus 45 ~as~~eIk~ayr~l~~~~HP 64 (102)
+-|.++||.+|..++++..-
T Consensus 66 ~Rt~EdLK~RyY~v~~~l~~ 85 (93)
T 3hm5_A 66 KRSVEDLKERYYHICAKLAN 85 (93)
T ss_dssp CCCHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHH
Confidence 56999999999999887643
No 77
>1k99_A Upstream binding factor 1; alpha-helix, L-shape, DNA binding protein; NMR {Homo sapiens} SCOP: a.21.1.1
Probab=23.06 E-value=1.2e+02 Score=17.59 Aligned_cols=40 Identities=13% Similarity=0.049 Sum_probs=28.5
Q ss_pred HHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhChhhHHHHH
Q 034178 53 SNYIRLALKWHPDKQKDRDCATSRFQEINEAYQEKNGSLILMVKI 97 (102)
Q Consensus 53 ~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~~~ 97 (102)
+..|...+.-||+.. ..+..+.|.+.|..|++.......+
T Consensus 23 ~~~r~~ik~~~P~~~-----~~eisk~lg~~Wk~ls~eeK~~Y~~ 62 (99)
T 1k99_A 23 MEKRAKYAKLHPEMS-----NLDLTKILSKKYKELPEKKKMKYIQ 62 (99)
T ss_dssp HHHHHHHHTTCTTSC-----SHHHHHHHHHHHHHSCSTTHHHHHH
T ss_pred HHHHHHHHHHCCCCC-----HHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 445566666788764 3578889999999999887655443
No 78
>4euw_A Transcription factor SOX-9; protein-DNA complex, HMG domain, activator, DNA-binding, NUC transcription; HET: DNA; 2.77A {Homo sapiens}
Probab=22.77 E-value=1.3e+02 Score=17.73 Aligned_cols=39 Identities=10% Similarity=-0.047 Sum_probs=28.7
Q ss_pred HHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhChhhHHH
Q 034178 52 RSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQEKNGSLILMV 95 (102)
Q Consensus 52 k~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~ 95 (102)
.+.+|...+.-||+.. ..+..+.|.+.|..|++..+...
T Consensus 41 ~~~~r~~~k~~~P~~~-----~~eisk~lg~~Wk~ls~eeK~~Y 79 (106)
T 4euw_A 41 AQAARRKLADQYPHLH-----NAELSKTLGKLWRLLNESEKRPF 79 (106)
T ss_dssp HHHHHHHHHHHCTTSC-----HHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHCCCCC-----HHHHHHHHHHHHHcCCHHHHHHH
Confidence 5667777788899765 45788888888888887665443
No 79
>2ov6_A V-type ATP synthase subunit F; F subunit, A1AO ATP synthase, hydrolase; NMR {Methanosarcina mazei}
Probab=20.96 E-value=40 Score=20.05 Aligned_cols=26 Identities=4% Similarity=-0.012 Sum_probs=19.6
Q ss_pred cchhhccC---CCCCHHHHHHHHHHHHHH
Q 034178 36 YYKILEVD---YDATEEEIRSNYIRLALK 61 (102)
Q Consensus 36 ~y~vLgl~---~~as~~eIk~ayr~l~~~ 61 (102)
-|.+.|+. +-.+.+++.+++++++..
T Consensus 14 GFrLaGi~~v~~v~~~ee~~~~~~~l~~~ 42 (101)
T 2ov6_A 14 GFRLAGISKVYETPDIPATESAVRSVLED 42 (101)
T ss_dssp HHHHHTCCEEEECCSTTTHHHHHHHHHHH
T ss_pred HHHHcCCCceEecCCHHHHHHHHHHHhhC
Confidence 46777887 345778899999998864
No 80
>2i4r_A V-type ATP synthase subunit F; NESG, GR52A, ATP synthesis, hydrolase, structural genomics, protein structure initiative; 2.80A {Archaeoglobus fulgidus} SCOP: c.149.1.1
Probab=20.90 E-value=59 Score=19.45 Aligned_cols=27 Identities=11% Similarity=0.070 Sum_probs=20.7
Q ss_pred CcchhhccCC---CCCHHHHHHHHHHHHHH
Q 034178 35 DYYKILEVDY---DATEEEIRSNYIRLALK 61 (102)
Q Consensus 35 ~~y~vLgl~~---~as~~eIk~ayr~l~~~ 61 (102)
.-|.+.|+.. ..+.+++++++++++..
T Consensus 22 ~GFrLaGi~~~~~~~~~ee~~~~~~~l~~~ 51 (102)
T 2i4r_A 22 IGFMLAGISDIYEVTSDEEIVKAVEDVLKR 51 (102)
T ss_dssp HHHHHTTCCCEEECCSHHHHHHHHHHHHHC
T ss_pred HHHHHcCCCcccCCCCHHHHHHHHHHHhhC
Confidence 3467778875 34889999999998873
No 81
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=20.61 E-value=83 Score=18.78 Aligned_cols=18 Identities=17% Similarity=0.447 Sum_probs=15.7
Q ss_pred CCCHHHHHHHHHHHHHHh
Q 034178 45 DATEEEIRSNYIRLALKW 62 (102)
Q Consensus 45 ~as~~eIk~ayr~l~~~~ 62 (102)
.-|.++||..|..++.+.
T Consensus 66 ~RtvEdLK~RYY~V~~~l 83 (93)
T 4iej_A 66 KRSVEDLKERYYHICAKL 83 (93)
T ss_dssp CCCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHH
Confidence 569999999999988875
No 82
>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1
Probab=20.36 E-value=1.8e+02 Score=19.18 Aligned_cols=18 Identities=17% Similarity=0.265 Sum_probs=13.0
Q ss_pred HHHHHHHHhCCCCCCCch
Q 034178 54 NYIRLALKWHPDKQKDRD 71 (102)
Q Consensus 54 ayr~l~~~~HPD~~~~~~ 71 (102)
.-++..++.|||..-..+
T Consensus 8 yi~kvLkqv~p~~~iS~~ 25 (192)
T 2jss_A 8 YIYKVLKQTHPDTGISQK 25 (192)
T ss_dssp HHHHHHHHHCSSCCCCHH
T ss_pred HHHHHHcccCCCCCcCHH
Confidence 346777888999876653
No 83
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=25.69 E-value=22 Score=20.30 Aligned_cols=22 Identities=14% Similarity=0.323 Sum_probs=16.4
Q ss_pred CCCHHHHHHHHHHHHHHhCCCC
Q 034178 45 DATEEEIRSNYIRLALKWHPDK 66 (102)
Q Consensus 45 ~as~~eIk~ayr~l~~~~HPD~ 66 (102)
+-++++|+.+|+.|++.+|-.+
T Consensus 47 nks~~QV~~RF~~Lm~Lf~kSk 68 (70)
T 2lr8_A 47 DKNPNQVSERFQQLMKLFEKSK 68 (70)
Confidence 4577888888888888876544
Done!