BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 034179
(102 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4DEV|A Chain A, An Acetyl Xylan Esterase (est2a) From The Rumen Bacterium
Butyrivibrio Proteoclasticus.
pdb|4DEV|B Chain B, An Acetyl Xylan Esterase (est2a) From The Rumen Bacterium
Butyrivibrio Proteoclasticus.
pdb|4DEV|C Chain C, An Acetyl Xylan Esterase (est2a) From The Rumen Bacterium
Butyrivibrio Proteoclasticus.
pdb|4DEV|D Chain D, An Acetyl Xylan Esterase (est2a) From The Rumen Bacterium
Butyrivibrio Proteoclasticus.
pdb|4DEV|E Chain E, An Acetyl Xylan Esterase (est2a) From The Rumen Bacterium
Butyrivibrio Proteoclasticus.
pdb|4DEV|F Chain F, An Acetyl Xylan Esterase (est2a) From The Rumen Bacterium
Butyrivibrio Proteoclasticus.
pdb|4DEV|G Chain G, An Acetyl Xylan Esterase (est2a) From The Rumen Bacterium
Butyrivibrio Proteoclasticus.
pdb|4DEV|H Chain H, An Acetyl Xylan Esterase (est2a) From The Rumen Bacterium
Butyrivibrio Proteoclasticus
Length = 408
Score = 29.3 bits (64), Expect = 0.67, Method: Composition-based stats.
Identities = 22/88 (25%), Positives = 41/88 (46%), Gaps = 13/88 (14%)
Query: 11 VPLIARKMKFVEDAIKFYMGVLAASED----PCLLVSAASFKAPLLKAVSWMENNSEKFF 66
VP+ +RK++F+ D+I G A +D P + ++A++ KA+ N++
Sbjct: 161 VPVYSRKLEFIGDSITSGEGSYGAFDDVDWIPMYMSASANYATMTAKAL-----NADYHL 215
Query: 67 CSQSDGAHCWTLFSTAAYGKRNKVPQVF 94
SQ W +F R+ +P V+
Sbjct: 216 VSQGG----WGVFCGWDNDVRHNLPSVY 239
>pdb|3U37|A Chain A, An Acetyl Xylan Esterase (est2a) From The Rumen Bacterium
Butyrivibrio Proteoclasticus.
pdb|3U37|B Chain B, An Acetyl Xylan Esterase (est2a) From The Rumen Bacterium
Butyrivibrio Proteoclasticus.
pdb|3U37|C Chain C, An Acetyl Xylan Esterase (est2a) From The Rumen Bacterium
Butyrivibrio Proteoclasticus.
pdb|3U37|D Chain D, An Acetyl Xylan Esterase (est2a) From The Rumen Bacterium
Butyrivibrio Proteoclasticus.
pdb|3U37|E Chain E, An Acetyl Xylan Esterase (est2a) From The Rumen Bacterium
Butyrivibrio Proteoclasticus.
pdb|3U37|F Chain F, An Acetyl Xylan Esterase (est2a) From The Rumen Bacterium
Butyrivibrio Proteoclasticus.
pdb|3U37|G Chain G, An Acetyl Xylan Esterase (est2a) From The Rumen Bacterium
Butyrivibrio Proteoclasticus.
pdb|3U37|H Chain H, An Acetyl Xylan Esterase (est2a) From The Rumen Bacterium
Butyrivibrio Proteoclasticus
Length = 408
Score = 29.3 bits (64), Expect = 0.67, Method: Composition-based stats.
Identities = 22/88 (25%), Positives = 41/88 (46%), Gaps = 13/88 (14%)
Query: 11 VPLIARKMKFVEDAIKFYMGVLAASED----PCLLVSAASFKAPLLKAVSWMENNSEKFF 66
VP+ +RK++F+ D+I G A +D P + ++A++ KA+ N++
Sbjct: 161 VPVYSRKLEFIGDSITSGEGSYGAFDDVDWIPMYMSASANYATMTAKAL-----NADYHL 215
Query: 67 CSQSDGAHCWTLFSTAAYGKRNKVPQVF 94
SQ W +F R+ +P V+
Sbjct: 216 VSQGG----WGVFCGWDNDVRHNLPSVY 239
>pdb|1PN0|A Chain A, Phenol Hydroxylase From Trichosporon Cutaneum
pdb|1PN0|B Chain B, Phenol Hydroxylase From Trichosporon Cutaneum
pdb|1PN0|C Chain C, Phenol Hydroxylase From Trichosporon Cutaneum
pdb|1PN0|D Chain D, Phenol Hydroxylase From Trichosporon Cutaneum
Length = 665
Score = 26.2 bits (56), Expect = 5.4, Method: Composition-based stats.
Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 6/68 (8%)
Query: 28 YMGVLAASEDPCLLVSAASF-----KAPLLKAVSWMENNSEKFFCSQSDGAHCWTLFSTA 82
Y VL P L++A + P LK V ++ S K + Q+DG C TL S
Sbjct: 8 YCDVLIVGAGPAGLMAARVLSEYVRQKPDLK-VRIIDKRSTKVYNGQADGLQCRTLESLK 66
Query: 83 AYGKRNKV 90
G +K+
Sbjct: 67 NLGLADKI 74
>pdb|1FOH|A Chain A, Phenol Hydroxylase From Trichosporon Cutaneum
pdb|1FOH|B Chain B, Phenol Hydroxylase From Trichosporon Cutaneum
pdb|1FOH|C Chain C, Phenol Hydroxylase From Trichosporon Cutaneum
pdb|1FOH|D Chain D, Phenol Hydroxylase From Trichosporon Cutaneum
Length = 664
Score = 26.2 bits (56), Expect = 5.4, Method: Composition-based stats.
Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 6/68 (8%)
Query: 28 YMGVLAASEDPCLLVSAASF-----KAPLLKAVSWMENNSEKFFCSQSDGAHCWTLFSTA 82
Y VL P L++A + P LK V ++ S K + Q+DG C TL S
Sbjct: 7 YCDVLIVGAGPAGLMAARVLSEYVRQKPDLK-VRIIDKRSTKVYNGQADGLQCRTLESLK 65
Query: 83 AYGKRNKV 90
G +K+
Sbjct: 66 NLGLADKI 73
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.134 0.423
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,864,628
Number of Sequences: 62578
Number of extensions: 94078
Number of successful extensions: 262
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 262
Number of HSP's gapped (non-prelim): 4
length of query: 102
length of database: 14,973,337
effective HSP length: 67
effective length of query: 35
effective length of database: 10,780,611
effective search space: 377321385
effective search space used: 377321385
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 45 (21.9 bits)