BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 034179
         (102 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|P04822|IL1A_RABIT Interleukin-1 alpha OS=Oryctolagus cuniculus GN=IL1A PE=2 SV=1
          Length = 267

 Score = 32.3 bits (72), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 30/102 (29%), Positives = 41/102 (40%), Gaps = 13/102 (12%)

Query: 5   VVGSSGVPLIARKMKFVEDAIKFYMGVLAASEDPC-----------LLVSAASFKAPLLK 53
           V  +S   L A  ++ + DA+KF MGV   SED             L VSA +   P+L 
Sbjct: 145 VRDTSDQYLRAAPLQNLGDAVKFDMGVYMTSEDSILPVTLRISQTPLFVSAQNEDEPVL- 203

Query: 54  AVSWMENNSEKFFCSQSDGAHCWTLFSTAAYGKRNKVPQVFL 95
            +  M         S+SD    W       Y K    PQ+F+
Sbjct: 204 -LKEMPETPRIITDSESDILFFWETQGNKNYFKSAANPQLFI 244


>sp|P49317|CATA3_NICPL Catalase isozyme 3 OS=Nicotiana plumbaginifolia GN=CAT3 PE=2 SV=1
          Length = 492

 Score = 31.6 bits (70), Expect = 1.5,   Method: Composition-based stats.
 Identities = 13/42 (30%), Positives = 19/42 (45%)

Query: 31  VLAASEDPCLLVSAASFKAPLLKAVSWMENNSEKFFCSQSDG 72
           VL    D C++    +FK P  +  SW  +  E+F C   D 
Sbjct: 412 VLTGKRDKCIIEKENNFKQPGERYRSWAPDRQERFICRWVDA 453


>sp|B2TAY9|KDSB2_BURPP 3-deoxy-manno-octulosonate cytidylyltransferase 2 OS=Burkholderia
           phytofirmans (strain DSM 17436 / PsJN) GN=kdsB2 PE=3
           SV=1
          Length = 263

 Score = 29.3 bits (64), Expect = 7.8,   Method: Compositional matrix adjust.
 Identities = 20/95 (21%), Positives = 43/95 (45%), Gaps = 4/95 (4%)

Query: 3   KPVVGSSGVPLIARKMKFVEDAIKFYMGVLAASEDPCLLVSAASFKAPLLKAVSWMENNS 62
           KP++  +G P+I R  + V  A+   + ++ A++D  ++ S  +++ P+       ++ +
Sbjct: 26  KPLIDLAGEPMIVRVYEAVRAALPETVNIVVATDDERIVGSLEAYRIPVRMTDPEHQSGT 85

Query: 63  EKFFCSQSDGAHCWTL--FSTAAYGKRNKVPQVFL 95
           ++  C+Q      W          G    VPQ  L
Sbjct: 86  DR--CAQVARELGWNSDDLVVNVQGDEPLVPQPLL 118


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.324    0.134    0.423 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,002,985
Number of Sequences: 539616
Number of extensions: 1178775
Number of successful extensions: 2636
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 2634
Number of HSP's gapped (non-prelim): 4
length of query: 102
length of database: 191,569,459
effective HSP length: 71
effective length of query: 31
effective length of database: 153,256,723
effective search space: 4750958413
effective search space used: 4750958413
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)