Query 034179
Match_columns 102
No_of_seqs 106 out of 108
Neff 4.6
Searched_HMMs 29240
Date Mon Mar 25 18:11:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034179.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034179hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3qj4_A Renalase; FAD/NAD(P)-bi 98.8 4.4E-09 1.5E-13 79.0 3.7 70 14-89 181-255 (342)
2 1yvv_A Amine oxidase, flavin-c 98.5 1.1E-07 3.9E-12 70.1 4.8 67 14-89 173-242 (336)
3 3nks_A Protoporphyrinogen oxid 78.3 2 6.9E-05 32.8 3.8 72 12-88 300-377 (477)
4 2b9s_B DNA topoisomerase I-lik 20.9 32 0.0011 21.3 0.9 16 81-96 28-43 (62)
5 3lov_A Protoporphyrinogen oxid 19.9 35 0.0012 25.9 1.1 38 3-42 279-324 (475)
6 2yg5_A Putrescine oxidase; oxi 16.6 2.1E+02 0.0071 21.3 4.8 64 14-86 282-348 (453)
7 2ivd_A PPO, PPOX, protoporphyr 13.0 1.3E+02 0.0044 22.7 2.8 62 17-85 309-378 (478)
8 2d99_A Muscle, general transcr 11.6 47 0.0016 21.9 -0.1 33 7-42 1-33 (90)
9 3gj5_B Nuclear pore complex pr 10.7 63 0.0022 17.4 0.2 20 47-66 10-33 (34)
10 1q60_A General transcription f 8.7 89 0.003 20.9 0.4 33 7-42 1-33 (99)
No 1
>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens}
Probab=98.75 E-value=4.4e-09 Score=79.04 Aligned_cols=70 Identities=9% Similarity=0.068 Sum_probs=54.5
Q ss_pred HHHhhhhhhcccccceeeehhccCC--cccccccccccCcee---eeeeeeeCCCCCCCCCCCCCceEEEEeChhhHhhc
Q 034179 14 IARKMKFVEDAIKFYMGVLAASEDP--CLLVSAASFKAPLLK---AVSWMENNSEKFFCSQSDGAHCWTLFSTAAYGKRN 88 (102)
Q Consensus 14 lA~~~~~~~m~~~pcWalMaaF~~p--l~~~~~~~~dgafv~---~LsWiA~NSsKPg~~rr~g~e~WvlhAT~~wS~~H 88 (102)
..+.+..+.+. |||+++++|+++ ++.+ ++|.++. .|.|+++|++|||+...++..+||+|++.+|+++|
T Consensus 181 ~~~~l~~~~~~--~~~~v~l~~~~~~~~~~~----~~g~~~~~~~~~~~~~~~~~k~~r~~~~~~~~~v~~~~~~~~~~~ 254 (342)
T 3qj4_A 181 QRQQLEAVSYS--SRYALGLFYEAGTKIDVP----WAGQYITSNPCIRFVSIDNKKRNIESSEIGPSLVIHTTVPFGVTY 254 (342)
T ss_dssp HHHHHHTCCBC--CEEEEEEECSSCC--CCS----CSEEECSSCSSEEEEEEHHHHTTCCCC-CCCEEEEEECHHHHHHT
T ss_pred HHHHHhcCCcc--ccEEEEEEECCCCccCCc----eeeEEccCCcceEEEEccccCCCCCCCCCCceEEEECCHHHHHHh
Confidence 46667778899 999999999976 5566 8887775 59999999999981111234699999999999876
Q ss_pred C
Q 034179 89 K 89 (102)
Q Consensus 89 k 89 (102)
.
T Consensus 255 ~ 255 (342)
T 3qj4_A 255 L 255 (342)
T ss_dssp T
T ss_pred h
Confidence 4
No 2
>1yvv_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae} PDB: 3kkj_A*
Probab=98.49 E-value=1.1e-07 Score=70.07 Aligned_cols=67 Identities=21% Similarity=0.312 Sum_probs=55.4
Q ss_pred HHHhhhhhhcccccceeeehhccCCcccccccccccCcee--eeeeeeeCCCCCCCCCCCCC-ceEEEEeChhhHhhcC
Q 034179 14 IARKMKFVEDAIKFYMGVLAASEDPCLLVSAASFKAPLLK--AVSWMENNSEKFFCSQSDGA-HCWTLFSTAAYGKRNK 89 (102)
Q Consensus 14 lA~~~~~~~m~~~pcWalMaaF~~pl~~~~~~~~dgafv~--~LsWiA~NSsKPg~~rr~g~-e~WvlhAT~~wS~~Hk 89 (102)
+...+....+. +||.+++.|++|...+ +++.|+. ++.|+.+++.||+ +++. .+||+|.+++|++++.
T Consensus 173 l~~~~~~~~~~--~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~p~---~~~~~~~~v~~~~~~~~~~~~ 242 (336)
T 1yvv_A 173 LASVVAGVKMD--PTWAVALAFETPLQTP----MQGCFVQDSPLDWLARNRSKPE---RDDTLDTWILHATSQWSRQNL 242 (336)
T ss_dssp HHHHHTTCCEE--EEEEEEEEESSCCSCC----CCEEEECSSSEEEEEEGGGSTT---CCCSSEEEEEEECHHHHHHTT
T ss_pred HHHHHhhcCcc--ceeEEEEEecCCCCCC----CCeEEeCCCceeEEEecCcCCC---CCCCCcEEEEEeCHHHHHHHH
Confidence 33444666788 9999999999998777 7777776 8999999999999 5554 7999999999998763
No 3
>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens}
Probab=78.35 E-value=2 Score=32.83 Aligned_cols=72 Identities=13% Similarity=0.009 Sum_probs=45.0
Q ss_pred hHHHHhhhhhhcccccceeeehhccCCcccccccccccCcee------eeeeeeeCCCCCCCCCCCCCceEEEEeChhhH
Q 034179 12 PLIARKMKFVEDAIKFYMGVLAASEDPCLLVSAASFKAPLLK------AVSWMENNSEKFFCSQSDGAHCWTLFSTAAYG 85 (102)
Q Consensus 12 p~lA~~~~~~~m~~~pcWalMaaF~~pl~~~~~~~~dgafv~------~LsWiA~NSsKPg~~rr~g~e~WvlhAT~~wS 85 (102)
|.+.+.+..+.+. +|+.+++.|+++.-.. ..| |..+. .+.|+-.++..|+..+.++...++++.+.+|.
T Consensus 300 ~~~~~~l~~~~~~--~~~~v~l~~~~~~~~~--~~~-g~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~l~~~~gg~~~ 374 (477)
T 3nks_A 300 APLARALSAITAV--SVAVVNLQYQGAHLPV--QGF-GHLVPSSEDPGVLGIVYDSVAFPEQDGSPPGLRVTVMLGGSWL 374 (477)
T ss_dssp HHHHHHHHTCCEE--EEEEEEEEETTCCCSS--CSS-EEECCTTTCSSEEEEECHHHHCGGGSTTTTCEEEEEEECHHHH
T ss_pred HHHHHHHhcCCCC--cEEEEEEEECCCCCCC--CCc-eEEccCCCCCCceEEEEeccccCCCCCCCCceEEEEEECCccc
Confidence 4455556666788 9999999999975310 013 33331 67887655555762222244567788888888
Q ss_pred hhc
Q 034179 86 KRN 88 (102)
Q Consensus 86 ~~H 88 (102)
..+
T Consensus 375 ~~~ 377 (477)
T 3nks_A 375 QTL 377 (477)
T ss_dssp HHH
T ss_pred ccc
Confidence 765
No 4
>2b9s_B DNA topoisomerase I-like protein; vanadate complex, isomerase/DNA complex; HET: DNA; 2.27A {Leishmania donovani}
Probab=20.92 E-value=32 Score=21.34 Aligned_cols=16 Identities=19% Similarity=0.328 Sum_probs=13.2
Q ss_pred ChhhHhhcCCCCcccc
Q 034179 81 TAAYGKRNKVPQVFLH 96 (102)
Q Consensus 81 T~~wS~~Hkvpqe~~p 96 (102)
|-+|.+.|.||-|-|=
T Consensus 28 tvaWcKr~~VPieKif 43 (62)
T 2b9s_B 28 ICSWAKAQDVPINKIF 43 (62)
T ss_dssp HHHHHHHTTCCGGGTS
T ss_pred hhhhhhhcCCCHHHHh
Confidence 4589999999998763
No 5
>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum}
Probab=19.95 E-value=35 Score=25.93 Aligned_cols=38 Identities=11% Similarity=-0.018 Sum_probs=24.4
Q ss_pred CCCCCCCChhHHHHh--------hhhhhcccccceeeehhccCCcccc
Q 034179 3 KPVVGSSGVPLIARK--------MKFVEDAIKFYMGVLAASEDPCLLV 42 (102)
Q Consensus 3 ~~~~~~~~~p~lA~~--------~~~~~m~~~pcWalMaaF~~pl~~~ 42 (102)
++++-+...+.++++ +..+.+. +|+.+++.|++|.+.+
T Consensus 279 d~vV~a~p~~~~~~ll~~~~~~~~~~~~~~--~~~~v~l~~~~~~~~~ 324 (475)
T 3lov_A 279 DYVLLTIPHPQVVQLLPDAHLPELEQLTTH--STATVTMIFDQQQSLP 324 (475)
T ss_dssp SEEEECSCHHHHHHHCTTSCCHHHHTCCEE--EEEEEEEEEECCSSCS
T ss_pred CEEEECCCHHHHHHHcCccCHHHHhcCCCC--eEEEEEEEECCcCCCC
Confidence 344444444444443 3345677 9999999999987433
No 6
>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A*
Probab=16.65 E-value=2.1e+02 Score=21.33 Aligned_cols=64 Identities=11% Similarity=0.038 Sum_probs=37.1
Q ss_pred HHHhhhhhhcccccceeeehhccCCcccccccccccCcee---eeeeeeeCCCCCCCCCCCCCceEEEEeChhhHh
Q 034179 14 IARKMKFVEDAIKFYMGVLAASEDPCLLVSAASFKAPLLK---AVSWMENNSEKFFCSQSDGAHCWTLFSTAAYGK 86 (102)
Q Consensus 14 lA~~~~~~~m~~~pcWalMaaF~~pl~~~~~~~~dgafv~---~LsWiA~NSsKPg~~rr~g~e~WvlhAT~~wS~ 86 (102)
..+.+.+..+. ++..+.+.|++|.-.. ..+.|..+. ++.|+.+++ +|. . +...++.+...++++
T Consensus 282 ~~~~i~~~~~~--~~~kv~l~~~~~~w~~--~~~~g~~~~~~~~~~~~~~~~-~~~---~-~~~~l~~~~~~~~~~ 348 (453)
T 2yg5_A 282 QHQMHQHQSLG--LVIKVHAVYETPFWRE--DGLSGTGFGASEVVQEVYDNT-NHE---D-DRGTLVAFVSDEKAD 348 (453)
T ss_dssp HHHHGGGEEEC--CEEEEEEEESSCGGGG--GTEEEEEECTTSSSCEEEECC-CTT---C-SSEEEEEEEEHHHHH
T ss_pred HHHHHhcCCCc--ceEEEEEEECCCCCCC--CCCCceeecCCCCeEEEEeCC-CCC---C-CCCEEEEEeccHHHH
Confidence 44455666677 8999999999985211 003343332 667776555 554 1 123677777665543
No 7
>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A*
Probab=12.98 E-value=1.3e+02 Score=22.68 Aligned_cols=62 Identities=13% Similarity=-0.010 Sum_probs=35.1
Q ss_pred hhhhhhcccccceeeehhccCCc-ccccccccccCce---e--eeeeeeeCCCC-CCCCC-CCCCceEEEEeChhhH
Q 034179 17 KMKFVEDAIKFYMGVLAASEDPC-LLVSAASFKAPLL---K--AVSWMENNSEK-FFCSQ-SDGAHCWTLFSTAAYG 85 (102)
Q Consensus 17 ~~~~~~m~~~pcWalMaaF~~pl-~~~~~~~~dgafv---~--~LsWiA~NSsK-Pg~~r-r~g~e~WvlhAT~~wS 85 (102)
.+....+. +++.++++|++|. +.+ ..| +.++ . .+.++..++++ |+ + .++...++++.+..++
T Consensus 309 ~l~~~~~~--~~~~v~l~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~s~~~~~--~~p~g~~~l~~~~~~~~~ 378 (478)
T 2ivd_A 309 LVAGIAYA--PIAVVHLGFDAGTLPAP--DGF-GFLVPAEEQRRMLGAIHASTTFPF--RAEGGRVLYSCMVGGARQ 378 (478)
T ss_dssp HHHTCCBC--CEEEEEEEECTTSSCCC--CSS-EEECCGGGCCSCCEEEEHHHHCGG--GBSTTCEEEEEEEECTTC
T ss_pred HHhcCCCC--cEEEEEEEEccccCCCC--Cce-EEEecCCCCCceEEEEEEcccCCC--cCCCCCEEEEEEeCCcCC
Confidence 33445577 9999999999874 321 012 1111 1 35566666655 33 1 2244578888776654
No 8
>2d99_A Muscle, general transcription factor II-I repeat domain- containing protein 1; structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=11.64 E-value=47 Score=21.94 Aligned_cols=33 Identities=18% Similarity=0.088 Sum_probs=26.9
Q ss_pred CCCChhHHHHhhhhhhcccccceeeehhccCCcccc
Q 034179 7 GSSGVPLIARKMKFVEDAIKFYMGVLAASEDPCLLV 42 (102)
Q Consensus 7 ~~~~~p~lA~~~~~~~m~~~pcWalMaaF~~pl~~~ 42 (102)
|+||.-.|.++...+ .+ -|++=+++.+.|.++|
T Consensus 1 ~~~~~~~LrKqVeel-F~--~~Y~eALG~~~pv~VP 33 (90)
T 2d99_A 1 GSSGSSGLRKMVEEV-FD--VLYSEALGRASVVPLP 33 (90)
T ss_dssp CCCCCSCHHHHHHHH-HH--HHHHHHHTCSSCCCCC
T ss_pred CcchHHHHHHHHHHH-HH--HHHHHHcCCCCcccCC
Confidence 577877788887777 56 6999999999998876
No 9
>3gj5_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.79A {Rattus norvegicus} SCOP: g.41.11.1
Probab=10.72 E-value=63 Score=17.42 Aligned_cols=20 Identities=15% Similarity=0.051 Sum_probs=14.3
Q ss_pred cccCcee----eeeeeeeCCCCCC
Q 034179 47 FKAPLLK----AVSWMENNSEKFF 66 (102)
Q Consensus 47 ~dgafv~----~LsWiA~NSsKPg 66 (102)
.+...|+ .+.-+++++.|||
T Consensus 10 C~~C~v~N~~~~~kC~aCet~Kpg 33 (34)
T 3gj5_B 10 CEVCLVQNKADSTKCIACESAKPG 33 (34)
T ss_dssp CTTTCCEECSSCSBCTTTCCBC--
T ss_pred CCeeEeECccccCEEcccCCcCCC
Confidence 4566665 7889999999998
No 10
>1q60_A General transcription factor II-I; TFII-I, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.288.1.1
Probab=8.67 E-value=89 Score=20.90 Aligned_cols=33 Identities=18% Similarity=0.108 Sum_probs=26.9
Q ss_pred CCCChhHHHHhhhhhhcccccceeeehhccCCcccc
Q 034179 7 GSSGVPLIARKMKFVEDAIKFYMGVLAASEDPCLLV 42 (102)
Q Consensus 7 ~~~~~p~lA~~~~~~~m~~~pcWalMaaF~~pl~~~ 42 (102)
|+||.-.|.++...+ .+ -|++=.++.++|..+|
T Consensus 1 ~~~~i~~LrkqVe~L-Fn--~kygkALGl~~pv~VP 33 (99)
T 1q60_A 1 GSSGSSGLKQKVENL-FN--EKCGEALGLKQAVKVP 33 (99)
T ss_dssp CCCCCSHHHHHHHHH-HH--HHHHHHHTCSSCCCCC
T ss_pred CchHHHHHHHHHHHH-hh--hHHHHHhCCCCcccCC
Confidence 578888888887777 56 6999999999988776
Done!