Your job contains 1 sequence.
>034180
MQAFVEINAVSFFIVCRSARVSFNLGFLKSLKMSGRKETVLDLAKFVDKGVQVKLTGGRQ
VTGTLKGYDQLLNLVLDEAVEFLRGNLYNGIFVIVCFLLVCF
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 034180
(102 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2056825 - symbol:EMB2816 "AT2G03870" species:3... 253 1.1e-21 1
UNIPROTKB|G4NLE3 - symbol:MGG_02938 "Uncharacterized prot... 172 4.4e-13 1
FB|FBgn0261068 - symbol:LSm7 species:7227 "Drosophila mel... 167 1.5e-12 1
ASPGD|ASPL0000056132 - symbol:AN0767 species:162425 "Emer... 163 3.9e-12 1
UNIPROTKB|Q9UK45 - symbol:LSM7 "U6 snRNA-associated Sm-li... 160 8.2e-12 1
POMBASE|SPCC285.12 - symbol:lsm7 "U6 snRNP-associated pro... 159 1.0e-11 1
DICTYBASE|DDB_G0289499 - symbol:lsm7 "putative U6 small n... 158 1.3e-11 1
SGD|S000005091 - symbol:LSM7 "Lsm (Like Sm) protein" spec... 158 1.3e-11 1
WB|WBGene00003081 - symbol:lsm-7 species:6239 "Caenorhabd... 156 2.2e-11 1
UNIPROTKB|Q23543 - symbol:lsm-7 "Protein LSM-7" species:6... 156 2.2e-11 1
ZFIN|ZDB-GENE-030131-8284 - symbol:lsm7 "LSM7 homolog, U6... 156 2.2e-11 1
TAIR|locus:2061446 - symbol:SNRNP-G "AT2G23930" species:3... 134 4.7e-09 1
FB|FBgn0261791 - symbol:SmG "Small ribonucleoprotein part... 130 1.2e-08 1
UNIPROTKB|Q3ZBL0 - symbol:SNRPG "Small nuclear ribonucleo... 130 1.2e-08 1
UNIPROTKB|P62308 - symbol:SNRPG "Small nuclear ribonucleo... 130 1.2e-08 1
UNIPROTKB|F2Z5V2 - symbol:LOC100525867 "Uncharacterized p... 130 1.2e-08 1
RGD|1584713 - symbol:Snrpg "small nuclear ribonucleoprote... 130 1.2e-08 1
ZFIN|ZDB-GENE-040912-105 - symbol:zgc:103688 "zgc:103688"... 128 2.0e-08 1
TAIR|locus:2080777 - symbol:AT3G11500 "AT3G11500" species... 124 5.3e-08 1
WB|WBGene00004920 - symbol:snr-7 species:6239 "Caenorhabd... 124 5.3e-08 1
GENEDB_PFALCIPARUM|PFL0460w - symbol:PFL0460w "u6 snRNA-a... 121 1.1e-07 1
UNIPROTKB|Q8I5V6 - symbol:PFL0460w "Lsm7 homologue, putat... 121 1.1e-07 1
GENEDB_PFALCIPARUM|MAL8P1.48 - symbol:MAL8P1.48 "small nu... 120 1.4e-07 1
UNIPROTKB|A8MWD9 - symbol:A8MWD9 "Small nuclear ribonucle... 117 2.9e-07 1
POMBASE|SPBC4B4.05 - symbol:smg1 "U4/U6 x U5 tri-snRNP co... 109 2.1e-06 1
UNIPROTKB|G4MXF4 - symbol:MGG_10740 "Sm snRNP core protei... 107 3.4e-06 1
SGD|S000002965 - symbol:SMX2 "Core Sm protein Sm G" speci... 107 3.4e-06 1
ASPGD|ASPL0000049189 - symbol:AN1495 species:162425 "Emer... 106 4.3e-06 1
DICTYBASE|DDB_G0282863 - symbol:snrpG "putative small nuc... 100 1.9e-05 1
SGD|S000006434 - symbol:LSM3 "Lsm (Like Sm) protein" spec... 100 1.9e-05 1
UNIPROTKB|Q3ZCE0 - symbol:NAA38 "N-alpha-acetyltransferas... 99 2.4e-05 1
UNIPROTKB|O95777 - symbol:NAA38 "N-alpha-acetyltransferas... 99 2.4e-05 1
MGI|MGI:1923772 - symbol:Naa38 "N(alpha)-acetyltransferas... 99 2.4e-05 1
TAIR|locus:2011246 - symbol:LSM1A "SM-like 1A" species:37... 94 8.1e-05 1
WB|WBGene00003077 - symbol:lsm-3 species:6239 "Caenorhabd... 91 0.00017 1
POMBASE|SPCC1840.10 - symbol:lsm8 "U6 snRNP-associated pr... 90 0.00021 1
POMBASE|SPBC9B6.05c - symbol:lsm3 "U6 snRNP-associated pr... 88 0.00035 1
TAIR|locus:2087522 - symbol:LSM1B "SM-like 1B" species:37... 88 0.00035 1
FB|FBgn0261067 - symbol:LSm1 species:7227 "Drosophila mel... 87 0.00045 1
FB|FBgn0035271 - symbol:CG2021 species:7227 "Drosophila m... 85 0.00072 1
UNIPROTKB|P62312 - symbol:LSM6 "U6 snRNA-associated Sm-li... 84 0.00093 1
MGI|MGI:1925901 - symbol:Lsm6 "LSM6 homolog, U6 small nuc... 84 0.00093 1
TAIR|locus:2080487 - symbol:LSM6A "AT3G59810" species:370... 84 0.00093 1
>TAIR|locus:2056825 [details] [associations]
symbol:EMB2816 "AT2G03870" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM;ISS] [GO:0005732 "small nucleolar
ribonucleoprotein complex" evidence=ISS] INTERPRO:IPR001163
EMBL:CP002685 GenomeReviews:CT485783_GR InterPro:IPR010920
SUPFAM:SSF50182 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
HSSP:O29386 eggNOG:NOG276686 KO:K12626 OMA:VLDNTVE
InterPro:IPR017132 PIRSF:PIRSF037188 HOGENOM:HOG000223548
EMBL:AC007196 EMBL:BT003087 EMBL:AK227358 IPI:IPI00526989
PIR:B84453 RefSeq:NP_178480.1 RefSeq:NP_849931.1 UniGene:At.41365
ProteinModelPortal:Q9SI54 SMR:Q9SI54 IntAct:Q9SI54 STRING:Q9SI54
PaxDb:Q9SI54 PRIDE:Q9SI54 ProMEX:Q9SI54 DNASU:814913
EnsemblPlants:AT2G03870.1 EnsemblPlants:AT2G03870.2 GeneID:814913
KEGG:ath:AT2G03870 TAIR:At2g03870 InParanoid:Q9SI54
PhylomeDB:Q9SI54 ProtClustDB:CLSN2683856 ArrayExpress:Q9SI54
Genevestigator:Q9SI54 Uniprot:Q9SI54
Length = 99
Score = 253 (94.1 bits), Expect = 1.1e-21, P = 1.1e-21
Identities = 51/52 (98%), Positives = 52/52 (100%)
Query: 33 MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLR 84
MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEF+R
Sbjct: 1 MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFVR 52
>UNIPROTKB|G4NLE3 [details] [associations]
symbol:MGG_02938 "Uncharacterized protein" species:242507
"Magnaporthe oryzae 70-15" [GO:0003674 "molecular_function"
evidence=ND] INTERPRO:IPR001163 EMBL:CM001237 InterPro:IPR010920
SUPFAM:SSF50182 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
KO:K12626 InterPro:IPR017132 PIRSF:PIRSF037188
RefSeq:XP_003720770.1 ProteinModelPortal:G4NLE3
EnsemblFungi:MGG_02938T0 GeneID:2682491 KEGG:mgr:MGG_02938
Uniprot:G4NLE3
Length = 146
Score = 172 (65.6 bits), Expect = 4.4e-13, P = 4.4e-13
Identities = 33/49 (67%), Positives = 40/49 (81%)
Query: 36 RKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLR 84
+KE +LDLAK++DK VQVK GGR+V GTLKGYD L+NLVLDE E +R
Sbjct: 54 KKENILDLAKYMDKEVQVKFNGGREVIGTLKGYDALMNLVLDEVKETMR 102
>FB|FBgn0261068 [details] [associations]
symbol:LSm7 species:7227 "Drosophila melanogaster"
[GO:0005688 "U6 snRNP" evidence=ISS] [GO:0000398 "mRNA splicing,
via spliceosome" evidence=IC;ISS] [GO:0071011 "precatalytic
spliceosome" evidence=IDA] [GO:0071013 "catalytic step 2
spliceosome" evidence=IDA] [GO:0022008 "neurogenesis" evidence=IMP]
INTERPRO:IPR001163 EMBL:AE014134 GO:GO:0022008 GO:GO:0071011
GO:GO:0000398 GO:GO:0071013 InterPro:IPR010920 SUPFAM:SSF50182
GO:GO:0005688 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
KO:K12626 OMA:VLDNTVE InterPro:IPR017132 PIRSF:PIRSF037188
CTD:51690 GeneTree:ENSGT00510000047872 HSSP:O29885 EMBL:AY113637
RefSeq:NP_001246045.1 RefSeq:NP_609807.1 UniGene:Dm.19844
SMR:Q9VJI7 IntAct:Q9VJI7 MINT:MINT-827616 STRING:Q9VJI7
EnsemblMetazoa:FBtr0080934 EnsemblMetazoa:FBtr0308804 GeneID:35003
KEGG:dme:Dmel_CG13277 UCSC:CG13277-RA FlyBase:FBgn0261068
InParanoid:Q9VJI7 OrthoDB:EOG41G1MQ GenomeRNAi:35003 NextBio:791341
Uniprot:Q9VJI7
Length = 110
Score = 167 (63.8 bits), Expect = 1.5e-12, P = 1.5e-12
Identities = 31/53 (58%), Positives = 42/53 (79%)
Query: 32 KMSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLR 84
K RKE++LDL+K+++K ++VK GGR+ +G LKGYD LLNLVLD VE+LR
Sbjct: 13 KEKRRKESILDLSKYLEKQIRVKFAGGREASGILKGYDALLNLVLDNTVEYLR 65
>ASPGD|ASPL0000056132 [details] [associations]
symbol:AN0767 species:162425 "Emericella nidulans"
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IEA]
[GO:0030490 "maturation of SSU-rRNA" evidence=IEA] [GO:0000956
"nuclear-transcribed mRNA catabolic process" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0005732 "small nucleolar ribonucleoprotein
complex" evidence=IEA] [GO:0005688 "U6 snRNP" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] [GO:0046540 "U4/U6 x U5
tri-snRNP complex" evidence=IEA] INTERPRO:IPR001163 EMBL:BN001308
GO:GO:0003676 GO:GO:0030529 InterPro:IPR010920 SUPFAM:SSF50182
EMBL:AACD01000012 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
eggNOG:NOG276686 KO:K12626 OMA:VLDNTVE InterPro:IPR017132
PIRSF:PIRSF037188 HOGENOM:HOG000223548 OrthoDB:EOG4BGD5N
RefSeq:XP_658371.1 ProteinModelPortal:Q5BFB3 STRING:Q5BFB3
EnsemblFungi:CADANIAT00001898 GeneID:2876542 KEGG:ani:AN0767.2
Uniprot:Q5BFB3
Length = 136
Score = 163 (62.4 bits), Expect = 3.9e-12, P = 3.9e-12
Identities = 30/49 (61%), Positives = 40/49 (81%)
Query: 36 RKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLR 84
+KE +LDL K++DK V+VK GGR+V+G LKGYDQL+NLVLD+ E +R
Sbjct: 46 KKENILDLTKYMDKEVRVKFNGGREVSGILKGYDQLMNLVLDDVKESMR 94
>UNIPROTKB|Q9UK45 [details] [associations]
symbol:LSM7 "U6 snRNA-associated Sm-like protein LSm7"
species:9606 "Homo sapiens" [GO:0005681 "spliceosomal complex"
evidence=IEA] [GO:0017070 "U6 snRNA binding" evidence=NAS]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=NAS]
[GO:0005634 "nucleus" evidence=NAS] [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=TAS] [GO:0005829 "cytosol"
evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0016070 "RNA metabolic process" evidence=TAS] [GO:0016071 "mRNA
metabolic process" evidence=TAS] [GO:0043928 "exonucleolytic
nuclear-transcribed mRNA catabolic process involved in
deadenylation-dependent decay" evidence=TAS] [GO:0005515 "protein
binding" evidence=IPI] Reactome:REACT_71 Reactome:REACT_21257
EMBL:AF182293 INTERPRO:IPR001163 GO:GO:0005829 GO:GO:0005634
GO:GO:0030529 GO:GO:0000398 InterPro:IPR010920 SUPFAM:SSF50182
GO:GO:0017070 GO:GO:0043928 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 eggNOG:NOG276686 KO:K12626 OMA:VLDNTVE
InterPro:IPR017132 PIRSF:PIRSF037188 EMBL:AC005258 EMBL:BC018621
IPI:IPI00007163 RefSeq:NP_057283.1 UniGene:Hs.512610
ProteinModelPortal:Q9UK45 SMR:Q9UK45 DIP:DIP-31129N IntAct:Q9UK45
MINT:MINT-1036641 STRING:Q9UK45 PhosphoSite:Q9UK45 DMDM:10720075
PaxDb:Q9UK45 PRIDE:Q9UK45 DNASU:51690 Ensembl:ENST00000252622
GeneID:51690 KEGG:hsa:51690 UCSC:uc002lvp.4 CTD:51690
GeneCards:GC19M002321 HGNC:HGNC:20470 HPA:HPA041850 MIM:607287
neXtProt:NX_Q9UK45 PharmGKB:PA134888612 HOGENOM:HOG000223548
HOVERGEN:HBG000513 OrthoDB:EOG4GB77F GenomeRNAi:51690 NextBio:55694
Bgee:Q9UK45 CleanEx:HS_LSM7 Genevestigator:Q9UK45
GermOnline:ENSG00000130332 Uniprot:Q9UK45
Length = 103
Score = 160 (61.4 bits), Expect = 8.2e-12, P = 8.2e-12
Identities = 28/53 (52%), Positives = 42/53 (79%)
Query: 32 KMSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLR 84
K +KE++LDL+K++DK ++VK GGR+ +G LKG+D LLNLVLD +E++R
Sbjct: 4 KEKKKKESILDLSKYIDKTIRVKFQGGREASGILKGFDPLLNLVLDGTIEYMR 56
>POMBASE|SPCC285.12 [details] [associations]
symbol:lsm7 "U6 snRNP-associated protein Lsm7
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=ISS] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005681 "spliceosomal complex" evidence=NAS] [GO:0005688 "U6
snRNP" evidence=ISO] [GO:0005829 "cytosol" evidence=IDA]
[GO:0006402 "mRNA catabolic process" evidence=ISS] [GO:0008033
"tRNA processing" evidence=IEA] [GO:0030490 "maturation of
SSU-rRNA" evidence=ISO] [GO:0045292 "mRNA cis splicing, via
spliceosome" evidence=ISO] [GO:0046540 "U4/U6 x U5 tri-snRNP
complex" evidence=ISO] PomBase:SPCC285.12 INTERPRO:IPR001163
GO:GO:0005829 EMBL:CU329672 GenomeReviews:CU329672_GR GO:GO:0005681
GO:GO:0003723 GO:GO:0008033 GO:GO:0006402 InterPro:IPR010920
SUPFAM:SSF50182 GO:GO:0046540 GO:GO:0030490 GO:GO:0045292
GO:GO:0005688 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
PDB:3SWN PDB:4EMK PDBsum:3SWN PDBsum:4EMK eggNOG:NOG276686
KO:K12626 OMA:VLDNTVE InterPro:IPR017132 PIRSF:PIRSF037188
HOGENOM:HOG000223548 PIR:T41258 RefSeq:NP_588340.1
ProteinModelPortal:O74499 STRING:O74499 EnsemblFungi:SPCC285.12.1
GeneID:2538964 KEGG:spo:SPCC285.12 OrthoDB:EOG4BGD5N
EvolutionaryTrace:O74499 NextBio:20800139 Uniprot:O74499
Length = 113
Score = 159 (61.0 bits), Expect = 1.0e-11, P = 1.0e-11
Identities = 29/49 (59%), Positives = 40/49 (81%)
Query: 36 RKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLR 84
RKE++LDL+++ D+ +Q TGGRQ+TG LKG+DQL+NLVLD+ E LR
Sbjct: 21 RKESILDLSRYQDQRIQATFTGGRQITGILKGFDQLMNLVLDDVEEQLR 69
>DICTYBASE|DDB_G0289499 [details] [associations]
symbol:lsm7 "putative U6 small nuclear
ribonucleoparticle-associated protein" species:44689 "Dictyostelium
discoideum" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0046540
"U4/U6 x U5 tri-snRNP complex" evidence=ISS] [GO:0006402 "mRNA
catabolic process" evidence=ISS] [GO:0005732 "small nucleolar
ribonucleoprotein complex" evidence=ISS] [GO:0005730 "nucleolus"
evidence=ISS] [GO:0005688 "U6 snRNP" evidence=ISS] [GO:0000398
"mRNA splicing, via spliceosome" evidence=ISS] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] dictyBase:DDB_G0289499
INTERPRO:IPR001163 GO:GO:0005730 GenomeReviews:CM000154_GR
GO:GO:0003723 EMBL:AAFI02000141 GO:GO:0006402 GO:GO:0000398
InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0046540 GO:GO:0005732
GO:GO:0005688 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
RefSeq:XP_636181.1 HSSP:O29386 ProteinModelPortal:Q54HF6
STRING:Q54HF6 EnsemblProtists:DDB0233196 GeneID:8627168
KEGG:ddi:DDB_G0289499 eggNOG:NOG276686 KO:K12626 OMA:VLDNTVE
InterPro:IPR017132 PIRSF:PIRSF037188 Uniprot:Q54HF6
Length = 97
Score = 158 (60.7 bits), Expect = 1.3e-11, P = 1.3e-11
Identities = 29/49 (59%), Positives = 39/49 (79%)
Query: 36 RKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLR 84
+KE++LDL KF+ K + VK TGGR+V G LKGYDQL+N+ LD+ EF+R
Sbjct: 8 KKESILDLQKFLGKEICVKFTGGREVQGILKGYDQLVNITLDQTQEFIR 56
>SGD|S000005091 [details] [associations]
symbol:LSM7 "Lsm (Like Sm) protein" species:4932
"Saccharomyces cerevisiae" [GO:0005732 "small nucleolar
ribonucleoprotein complex" evidence=IPI] [GO:0000956
"nuclear-transcribed mRNA catabolic process" evidence=IMP;IPI]
[GO:0046540 "U4/U6 x U5 tri-snRNP complex" evidence=NAS;IDA]
[GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0005737 "cytoplasm"
evidence=IEA;IDA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0008033 "tRNA processing" evidence=IEA]
[GO:0030490 "maturation of SSU-rRNA" evidence=IMP] [GO:0006364
"rRNA processing" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA;TAS;IPI] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IMP] [GO:0005688 "U6 snRNP" evidence=IDA] SGD:S000005091
INTERPRO:IPR001163 GO:GO:0005737 GO:GO:0005730 EMBL:BK006947
GO:GO:0003723 GO:GO:0008033 EMBL:Z46843 GO:GO:0000956 GO:GO:0000398
InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0046540 GO:GO:0030490
GO:GO:0005732 GO:GO:0005688 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 eggNOG:NOG276686 KO:K12626 InterPro:IPR017132
PIRSF:PIRSF037188 HOGENOM:HOG000223548 OrthoDB:EOG4BGD5N
EMBL:Z71423 PIR:S55137 RefSeq:NP_014252.2 ProteinModelPortal:P53905
SMR:P53905 DIP:DIP-1419N IntAct:P53905 MINT:MINT-398907
STRING:P53905 PaxDb:P53905 PeptideAtlas:P53905 EnsemblFungi:YNL147W
GeneID:855575 KEGG:sce:YNL147W CYGD:YNL147w
GeneTree:ENSGT00510000047872 OMA:ENNTELI NextBio:979694
Genevestigator:P53905 GermOnline:YNL147W Uniprot:P53905
Length = 115
Score = 158 (60.7 bits), Expect = 1.3e-11, P = 1.3e-11
Identities = 30/53 (56%), Positives = 41/53 (77%)
Query: 32 KMSG-RKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFL 83
K G ++E +LDLAK+ D ++VKL GG+ V G LKGYDQL+NLVLD+ VE++
Sbjct: 18 KFEGPKREAILDLAKYKDSKIRVKLMGGKLVIGVLKGYDQLMNLVLDDTVEYM 70
>WB|WBGene00003081 [details] [associations]
symbol:lsm-7 species:6239 "Caenorhabditis elegans"
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0008340
"determination of adult lifespan" evidence=IMP] [GO:0042127
"regulation of cell proliferation" evidence=IMP] [GO:0040020
"regulation of meiosis" evidence=IMP] [GO:0008406 "gonad
development" evidence=IMP] [GO:0016477 "cell migration"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
INTERPRO:IPR001163 GO:GO:0008340 GO:GO:0009792 GO:GO:0040007
GO:GO:0016477 GO:GO:0008406 GO:GO:0002119 GO:GO:0042127
GO:GO:0040020 InterPro:IPR010920 SUPFAM:SSF50182 EMBL:Z69385
Pfam:PF01423 InterPro:IPR006649 SMART:SM00651 HSSP:O29386
eggNOG:NOG276686 KO:K12626 OMA:VLDNTVE InterPro:IPR017132
PIRSF:PIRSF037188 HOGENOM:HOG000223548 GeneTree:ENSGT00510000047872
PIR:T27926 RefSeq:NP_502034.1 ProteinModelPortal:Q23543 SMR:Q23543
IntAct:Q23543 STRING:Q23543 PaxDb:Q23543 EnsemblMetazoa:ZK593.7.1
EnsemblMetazoa:ZK593.7.2 GeneID:177988 KEGG:cel:CELE_ZK593.7
UCSC:ZK593.7 CTD:177988 WormBase:ZK593.7 InParanoid:Q23543
NextBio:899246 Uniprot:Q23543
Length = 104
Score = 156 (60.0 bits), Expect = 2.2e-11, P = 2.2e-11
Identities = 27/49 (55%), Positives = 41/49 (83%)
Query: 36 RKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLR 84
+KE+V+DL +F+DK ++VK GGR+ +G L+G+DQLLN+VLD+ E+LR
Sbjct: 9 KKESVVDLTRFLDKEIRVKFQGGREASGVLRGFDQLLNMVLDDCREYLR 57
>UNIPROTKB|Q23543 [details] [associations]
symbol:lsm-7 "Protein LSM-7" species:6239 "Caenorhabditis
elegans" [GO:0005515 "protein binding" evidence=IPI]
INTERPRO:IPR001163 GO:GO:0008340 GO:GO:0009792 GO:GO:0040007
GO:GO:0016477 GO:GO:0008406 GO:GO:0002119 GO:GO:0042127
GO:GO:0040020 InterPro:IPR010920 SUPFAM:SSF50182 EMBL:Z69385
Pfam:PF01423 InterPro:IPR006649 SMART:SM00651 HSSP:O29386
eggNOG:NOG276686 KO:K12626 OMA:VLDNTVE InterPro:IPR017132
PIRSF:PIRSF037188 HOGENOM:HOG000223548 GeneTree:ENSGT00510000047872
PIR:T27926 RefSeq:NP_502034.1 ProteinModelPortal:Q23543 SMR:Q23543
IntAct:Q23543 STRING:Q23543 PaxDb:Q23543 EnsemblMetazoa:ZK593.7.1
EnsemblMetazoa:ZK593.7.2 GeneID:177988 KEGG:cel:CELE_ZK593.7
UCSC:ZK593.7 CTD:177988 WormBase:ZK593.7 InParanoid:Q23543
NextBio:899246 Uniprot:Q23543
Length = 104
Score = 156 (60.0 bits), Expect = 2.2e-11, P = 2.2e-11
Identities = 27/49 (55%), Positives = 41/49 (83%)
Query: 36 RKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLR 84
+KE+V+DL +F+DK ++VK GGR+ +G L+G+DQLLN+VLD+ E+LR
Sbjct: 9 KKESVVDLTRFLDKEIRVKFQGGREASGVLRGFDQLLNMVLDDCREYLR 57
>ZFIN|ZDB-GENE-030131-8284 [details] [associations]
symbol:lsm7 "LSM7 homolog, U6 small nuclear RNA
associated (S. cerevisiae)" species:7955 "Danio rerio" [GO:0003674
"molecular_function" evidence=ND] INTERPRO:IPR001163
ZFIN:ZDB-GENE-030131-8284 EMBL:BX908398 InterPro:IPR010920
SUPFAM:SSF50182 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
eggNOG:NOG276686 KO:K12626 InterPro:IPR017132 PIRSF:PIRSF037188
CTD:51690 HOVERGEN:HBG000513 OrthoDB:EOG4GB77F
GeneTree:ENSGT00510000047872 EMBL:BC133957 IPI:IPI00610946
RefSeq:NP_001041471.1 UniGene:Dr.10033 STRING:A4FVI7
Ensembl:ENSDART00000081188 GeneID:573047 KEGG:dre:573047
InParanoid:A4FVI7 NextBio:20891033 Uniprot:A4FVI7
Length = 103
Score = 156 (60.0 bits), Expect = 2.2e-11, P = 2.2e-11
Identities = 26/49 (53%), Positives = 40/49 (81%)
Query: 36 RKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLR 84
+KE++ DL+K++DK ++VK GGR+ +G LKG+D LLNLVLD +E++R
Sbjct: 8 KKESIFDLSKYIDKHIRVKFQGGREASGVLKGFDPLLNLVLDGTIEYMR 56
>TAIR|locus:2061446 [details] [associations]
symbol:SNRNP-G "AT2G23930" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM;ISS] [GO:0005732 "small nucleolar
ribonucleoprotein complex" evidence=ISS] [GO:0005829 "cytosol"
evidence=IDA] INTERPRO:IPR001163 GO:GO:0005829 GO:GO:0005634
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0008380 GO:GO:0006397
GO:GO:0003723 GO:GO:0030529 InterPro:IPR010920 SUPFAM:SSF50182
EMBL:AC005170 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
eggNOG:COG1958 EMBL:BT002035 EMBL:BT006498 EMBL:AY088256
IPI:IPI00541782 PIR:E84630 RefSeq:NP_179971.1 UniGene:At.27766
ProteinModelPortal:O82221 SMR:O82221 STRING:O82221 PRIDE:O82221
EnsemblPlants:AT2G23930.1 GeneID:816925 KEGG:ath:AT2G23930
GeneFarm:4625 TAIR:At2g23930 HOGENOM:HOG000223546 InParanoid:O82221
KO:K11099 OMA:DLFLNVV PhylomeDB:O82221 ProtClustDB:CLSN2683015
Genevestigator:O82221 GermOnline:AT2G23930 Uniprot:O82221
Length = 80
Score = 134 (52.2 bits), Expect = 4.7e-09, P = 4.7e-09
Identities = 27/54 (50%), Positives = 38/54 (70%)
Query: 42 DLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRGNLYNGIFVIV 95
DL K++DK +Q+KL R VTGTL+G+DQ +NLV+D VE + GN I ++V
Sbjct: 9 DLKKYMDKKLQIKLNANRMVTGTLRGFDQFMNLVVDNTVE-VNGNDKTDIGMVV 61
>FB|FBgn0261791 [details] [associations]
symbol:SmG "Small ribonucleoprotein particle protein SmG"
species:7227 "Drosophila melanogaster" [GO:0005634 "nucleus"
evidence=IDA] [GO:0030532 "small nuclear ribonucleoprotein complex"
evidence=ISS;IDA] [GO:0005681 "spliceosomal complex" evidence=ISS]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IC;ISS]
[GO:0000245 "spliceosomal complex assembly" evidence=ISS]
[GO:0007052 "mitotic spindle organization" evidence=IMP]
[GO:0071011 "precatalytic spliceosome" evidence=IDA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] INTERPRO:IPR001163
GO:GO:0007052 EMBL:AE014298 GO:GO:0003723 GO:GO:0071011
GO:GO:0000398 GO:GO:0071013 InterPro:IPR010920 SUPFAM:SSF50182
GO:GO:0030532 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
eggNOG:COG1958 KO:K11099 GeneTree:ENSGT00510000046985 OMA:VVIMEPK
EMBL:AY070698 EMBL:AY113538 RefSeq:NP_001138209.1
RefSeq:NP_573139.1 UniGene:Dm.19721 ProteinModelPortal:Q9VXE0
SMR:Q9VXE0 DIP:DIP-20715N IntAct:Q9VXE0 MINT:MINT-288468
STRING:Q9VXE0 PaxDb:Q9VXE0 PRIDE:Q9VXE0 EnsemblMetazoa:FBtr0074377
EnsemblMetazoa:FBtr0112993 GeneID:32636 KEGG:dme:Dmel_CG9742
CTD:32636 FlyBase:FBgn0261791 InParanoid:Q9VXE0 OrthoDB:EOG4GXD4H
PhylomeDB:Q9VXE0 ChiTaRS:SAMD4A GenomeRNAi:32636 NextBio:779578
Bgee:Q9VXE0 GermOnline:CG9742 Uniprot:Q9VXE0
Length = 76
Score = 130 (50.8 bits), Expect = 1.2e-08, P = 1.2e-08
Identities = 24/54 (44%), Positives = 38/54 (70%)
Query: 42 DLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRGNLYNGIFVIV 95
++ K++DK + +KL GGR VTG L+G+D +N+VLD+ VE + N N I ++V
Sbjct: 8 EVKKYMDKRMMLKLNGGRAVTGILRGFDPFMNVVLDDTVEECKDNTKNNIGMVV 61
>UNIPROTKB|Q3ZBL0 [details] [associations]
symbol:SNRPG "Small nuclear ribonucleoprotein G"
species:9913 "Bos taurus" [GO:0005683 "U7 snRNP" evidence=ISS]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0005681 "spliceosomal complex"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
INTERPRO:IPR001163 GO:GO:0008380 GO:GO:0006397 GO:GO:0005681
GO:GO:0003723 InterPro:IPR010920 SUPFAM:SSF50182 Pfam:PF01423
GO:GO:0005683 InterPro:IPR006649 SMART:SM00651 eggNOG:COG1958
HOVERGEN:HBG000513 OrthoDB:EOG4BRWND KO:K11099 EMBL:BC103236
IPI:IPI00688337 RefSeq:NP_001035633.1 UniGene:Bt.70615
ProteinModelPortal:Q3ZBL0 SMR:Q3ZBL0 STRING:Q3ZBL0 PRIDE:Q3ZBL0
Ensembl:ENSBTAT00000007241 GeneID:522621 KEGG:bta:522621 CTD:6637
GeneTree:ENSGT00510000046985 InParanoid:Q3ZBL0 OMA:ESVEMAP
NextBio:20873564 Uniprot:Q3ZBL0
Length = 76
Score = 130 (50.8 bits), Expect = 1.2e-08, P = 1.2e-08
Identities = 25/54 (46%), Positives = 35/54 (64%)
Query: 42 DLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRGNLYNGIFVIV 95
+L KF+DK + +KL GGR V G L+G+D +NLV+DE VE N I ++V
Sbjct: 8 ELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNIGMVV 61
>UNIPROTKB|P62308 [details] [associations]
symbol:SNRPG "Small nuclear ribonucleoprotein G"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000245 "spliceosomal complex assembly" evidence=NAS]
[GO:0005681 "spliceosomal complex" evidence=TAS] [GO:0008380 "RNA
splicing" evidence=TAS] [GO:0030532 "small nuclear
ribonucleoprotein complex" evidence=NAS] [GO:0071013 "catalytic
step 2 spliceosome" evidence=IDA] [GO:0005683 "U7 snRNP"
evidence=IDA] [GO:0005689 "U12-type spliceosomal complex"
evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC;TAS] [GO:0000387 "spliceosomal snRNP assembly"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0005829
"cytosol" evidence=TAS] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=TAS] [GO:0006369 "termination of
RNA polymerase II transcription" evidence=TAS] [GO:0006397 "mRNA
processing" evidence=TAS] [GO:0008334 "histone mRNA metabolic
process" evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0016070 "RNA metabolic process" evidence=TAS] [GO:0034660
"ncRNA metabolic process" evidence=TAS] [GO:0005515 "protein
binding" evidence=IPI] Reactome:REACT_71 Reactome:REACT_21257
INTERPRO:IPR001163 GO:GO:0005829 EMBL:CH471053 GO:GO:0005654
Reactome:REACT_1675 GO:GO:0003723 GO:GO:0000387 GO:GO:0034660
GO:GO:0071013 InterPro:IPR010920 SUPFAM:SSF50182
Reactome:REACT_1788 GO:GO:0000245 GO:GO:0006369 Reactome:REACT_78
GO:GO:0005689 PDB:3S6N PDBsum:3S6N Pfam:PF01423 GO:GO:0008334
GO:GO:0005683 InterPro:IPR006649 SMART:SM00651 HOVERGEN:HBG000513
PDB:2Y9A PDB:2Y9B PDB:2Y9C PDB:2Y9D PDB:3CW1 PDB:3PGW PDBsum:2Y9A
PDBsum:2Y9B PDBsum:2Y9C PDBsum:2Y9D PDBsum:3CW1 PDBsum:3PGW
UniGene:Hs.631639 KO:K11099 CTD:6637 OMA:ESVEMAP EMBL:X85373
EMBL:CR456918 EMBL:AC079338 EMBL:BC000070 EMBL:BC022432
EMBL:BC066302 EMBL:BC070166 EMBL:BC071880 EMBL:BC106055
IPI:IPI00016572 PIR:S55054 RefSeq:NP_003087.1 UniGene:Hs.465167
UniGene:Hs.516076 UniGene:Hs.654528 ProteinModelPortal:P62308
SMR:P62308 DIP:DIP-34627N IntAct:P62308 MINT:MINT-1527983
STRING:P62308 PhosphoSite:P62308 DMDM:59800216 PeptideAtlas:P62308
PRIDE:P62308 DNASU:6637 Ensembl:ENST00000272348 GeneID:6637
KEGG:hsa:6637 UCSC:uc002sgp.3 GeneCards:GC02M070508 HGNC:HGNC:11163
MIM:603542 neXtProt:NX_P62308 PharmGKB:PA36004 InParanoid:P62308
PhylomeDB:P62308 ChiTaRS:SNRPG EvolutionaryTrace:P62308
GenomeRNAi:6637 NextBio:25857 ArrayExpress:P62308 Bgee:P62308
CleanEx:HS_SNRPG Genevestigator:P62308 GermOnline:ENSG00000143977
Uniprot:P62308
Length = 76
Score = 130 (50.8 bits), Expect = 1.2e-08, P = 1.2e-08
Identities = 25/54 (46%), Positives = 35/54 (64%)
Query: 42 DLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRGNLYNGIFVIV 95
+L KF+DK + +KL GGR V G L+G+D +NLV+DE VE N I ++V
Sbjct: 8 ELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNIGMVV 61
>UNIPROTKB|F2Z5V2 [details] [associations]
symbol:LOC100525867 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0005689 "U12-type spliceosomal complex"
evidence=IEA] [GO:0005683 "U7 snRNP" evidence=IEA]
INTERPRO:IPR001163 InterPro:IPR010920 SUPFAM:SSF50182 Pfam:PF01423
InterPro:IPR006649 SMART:SM00651 KO:K11099
GeneTree:ENSGT00510000046985 OMA:ESVEMAP EMBL:FP476045
RefSeq:XP_003125100.1 UniGene:Ssc.27001 ProteinModelPortal:F2Z5V2
SMR:F2Z5V2 PRIDE:F2Z5V2 Ensembl:ENSSSCT00000031595 GeneID:100525867
KEGG:ssc:100525867 Uniprot:F2Z5V2
Length = 76
Score = 130 (50.8 bits), Expect = 1.2e-08, P = 1.2e-08
Identities = 25/54 (46%), Positives = 35/54 (64%)
Query: 42 DLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRGNLYNGIFVIV 95
+L KF+DK + +KL GGR V G L+G+D +NLV+DE VE N I ++V
Sbjct: 8 ELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNIGMVV 61
>RGD|1584713 [details] [associations]
symbol:Snrpg "small nuclear ribonucleoprotein polypeptide G"
species:10116 "Rattus norvegicus" [GO:0005683 "U7 snRNP"
evidence=ISO] [GO:0005689 "U12-type spliceosomal complex"
evidence=ISO] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISO] RGD:1584713 INTERPRO:IPR001163 InterPro:IPR010920
SUPFAM:SSF50182 EMBL:CH473957 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 eggNOG:COG1958 HOVERGEN:HBG000513 OrthoDB:EOG4BRWND
KO:K11099 CTD:6637 GeneTree:ENSGT00510000046985 OMA:ESVEMAP
EMBL:BC168750 IPI:IPI00211261 RefSeq:NP_001128557.1
RefSeq:XP_001079708.1 RefSeq:XP_003748887.1 UniGene:Rn.2397
SMR:B5DEP7 STRING:B5DEP7 Ensembl:ENSRNOT00000022367 GeneID:681031
GeneID:687679 KEGG:rno:681031 KEGG:rno:687679 UCSC:RGD:1584713
RGD:2321722 NextBio:720014 Genevestigator:B5DEP7 Uniprot:B5DEP7
Length = 76
Score = 130 (50.8 bits), Expect = 1.2e-08, P = 1.2e-08
Identities = 25/54 (46%), Positives = 35/54 (64%)
Query: 42 DLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRGNLYNGIFVIV 95
+L KF+DK + +KL GGR V G L+G+D +NLV+DE VE N I ++V
Sbjct: 8 ELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNIGMVV 61
>ZFIN|ZDB-GENE-040912-105 [details] [associations]
symbol:zgc:103688 "zgc:103688" species:7955 "Danio
rerio" [GO:0003674 "molecular_function" evidence=ND]
INTERPRO:IPR001163 ZFIN:ZDB-GENE-040912-105 InterPro:IPR010920
SUPFAM:SSF50182 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
eggNOG:COG1958 HOVERGEN:HBG000513 OrthoDB:EOG4BRWND
HOGENOM:HOG000223546 KO:K11099 EMBL:BC081512 IPI:IPI00482230
RefSeq:NP_001004660.2 RefSeq:NP_001161373.1 UniGene:Dr.83589
ProteinModelPortal:Q66I63 STRING:Q66I63 PRIDE:Q66I63 GeneID:447922
KEGG:dre:447922 InParanoid:Q66I63 NextBio:20832442
ArrayExpress:Q66I63 Bgee:Q66I63 Uniprot:Q66I63
Length = 76
Score = 128 (50.1 bits), Expect = 2.0e-08, P = 2.0e-08
Identities = 24/54 (44%), Positives = 36/54 (66%)
Query: 42 DLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRGNLYNGIFVIV 95
+L KF+DK + +KL GGR V G L+G+D +NLV+D+ +E G N I ++V
Sbjct: 8 ELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVVDDTIEMAPGGQMNTIGMVV 61
>TAIR|locus:2080777 [details] [associations]
symbol:AT3G11500 "AT3G11500" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM;ISS] [GO:0005732 "small nucleolar
ribonucleoprotein complex" evidence=ISS] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005829 "cytosol" evidence=RCA]
INTERPRO:IPR001163 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0005730 GO:GO:0003676 GO:GO:0030529 InterPro:IPR010920
SUPFAM:SSF50182 EMBL:AC008153 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 HSSP:O29386 HOGENOM:HOG000223546 KO:K11099
ProtClustDB:CLSN2683015 EMBL:AY062818 EMBL:BT001203 IPI:IPI00542169
RefSeq:NP_187757.1 UniGene:At.27222 ProteinModelPortal:Q9CAX7
SMR:Q9CAX7 STRING:Q9CAX7 PRIDE:Q9CAX7 DNASU:820323
EnsemblPlants:AT3G11500.1 GeneID:820323 KEGG:ath:AT3G11500
TAIR:At3g11500 InParanoid:Q9CAX7 OMA:NIGMVEI PhylomeDB:Q9CAX7
ArrayExpress:Q9CAX7 Genevestigator:Q9CAX7 Uniprot:Q9CAX7
Length = 79
Score = 124 (48.7 bits), Expect = 5.3e-08, P = 5.3e-08
Identities = 25/54 (46%), Positives = 37/54 (68%)
Query: 42 DLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRGNLYNGIFVIV 95
DL K++DK +Q+KL R V GTL+G+DQ +NLV+D VE + G+ I ++V
Sbjct: 9 DLKKYMDKKLQIKLNANRMVVGTLRGFDQFMNLVVDNTVE-VNGDDKTDIGMVV 61
>WB|WBGene00004920 [details] [associations]
symbol:snr-7 species:6239 "Caenorhabditis elegans"
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0040010
"positive regulation of growth rate" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0016246 "RNA interference"
evidence=IMP] [GO:0006898 "receptor-mediated endocytosis"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0040027
"negative regulation of vulval development" evidence=IMP]
[GO:0006915 "apoptotic process" evidence=IMP] [GO:0043186 "P
granule" evidence=IDA] INTERPRO:IPR001163 GO:GO:0005634
GO:GO:0009792 GO:GO:0006898 GO:GO:0040007 GO:GO:0040010
GO:GO:0006915 GO:GO:0002119 GO:GO:0016246 GO:GO:0008380
GO:GO:0006397 GO:GO:0040011 GO:GO:0000003 GO:GO:0003723
GO:GO:0040027 InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0043186
Pfam:PF01423 InterPro:IPR006649 SMART:SM00651 eggNOG:COG1958
EMBL:FO081276 HOGENOM:HOG000223546 KO:K11099
GeneTree:ENSGT00510000046985 EMBL:AF303264 RefSeq:NP_491032.1
UniGene:Cel.19416 ProteinModelPortal:Q9N4G9 SMR:Q9N4G9
IntAct:Q9N4G9 STRING:Q9N4G9 PaxDb:Q9N4G9 EnsemblMetazoa:Y71F9B.4.1
EnsemblMetazoa:Y71F9B.4.2 GeneID:171834 KEGG:cel:CELE_Y71F9B.4
UCSC:Y71F9B.4 CTD:171834 WormBase:Y71F9B.4 InParanoid:Q9N4G9
OMA:VVIMEPK NextBio:872901 Uniprot:Q9N4G9
Length = 77
Score = 124 (48.7 bits), Expect = 5.3e-08, P = 5.3e-08
Identities = 24/55 (43%), Positives = 41/55 (74%)
Query: 42 DLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLR--GNLYNGIFVI 94
+L K++DK + +KL G R+V+G L+G+D +N+V+DEAVE+ + G++ G+ VI
Sbjct: 8 ELKKYMDKEMDLKLNGNRRVSGILRGFDPFMNMVIDEAVEYQKDGGSVNLGMTVI 62
>GENEDB_PFALCIPARUM|PFL0460w [details] [associations]
symbol:PFL0460w "u6 snRNA-associated Sm-like
protein, putative" species:5833 "Plasmodium falciparum" [GO:0005634
"nucleus" evidence=ISS] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=ISS] [GO:0005681 "spliceosomal complex"
evidence=ISS] [GO:0005732 "small nucleolar ribonucleoprotein
complex" evidence=ISS] INTERPRO:IPR001163 GO:GO:0005681
EMBL:AE014188 GO:GO:0000398 InterPro:IPR010920 SUPFAM:SSF50182
GO:GO:0005732 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
KO:K12626 OMA:VLDNTVE InterPro:IPR017132 PIRSF:PIRSF037188
HOGENOM:HOG000223548 RefSeq:XP_001350501.1 HSSP:O29885
ProteinModelPortal:Q8I5V6 PRIDE:Q8I5V6
EnsemblProtists:PFL0460w:mRNA GeneID:811145 KEGG:pfa:PFL0460w
EuPathDB:PlasmoDB:PF3D7_1209200 ProtClustDB:CLSZ2431821
Uniprot:Q8I5V6
Length = 108
Score = 121 (47.7 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 24/53 (45%), Positives = 37/53 (69%)
Query: 42 DLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRGNLYNGIFVI 94
D+ KF+++ ++VK GGR+V GTL G+D + NLVLD+ E++R N FV+
Sbjct: 20 DIKKFMNQKIRVKFDGGREVVGTLIGHDAIFNLVLDKTEEYIRDP--NDSFVV 70
>UNIPROTKB|Q8I5V6 [details] [associations]
symbol:PFL0460w "Lsm7 homologue, putative" species:36329
"Plasmodium falciparum 3D7" [GO:0000398 "mRNA splicing, via
spliceosome" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005681 "spliceosomal complex" evidence=ISS] [GO:0005732 "small
nucleolar ribonucleoprotein complex" evidence=ISS]
INTERPRO:IPR001163 GO:GO:0005681 EMBL:AE014188 GO:GO:0000398
InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0005732 Pfam:PF01423
InterPro:IPR006649 SMART:SM00651 KO:K12626 OMA:VLDNTVE
InterPro:IPR017132 PIRSF:PIRSF037188 HOGENOM:HOG000223548
RefSeq:XP_001350501.1 HSSP:O29885 ProteinModelPortal:Q8I5V6
PRIDE:Q8I5V6 EnsemblProtists:PFL0460w:mRNA GeneID:811145
KEGG:pfa:PFL0460w EuPathDB:PlasmoDB:PF3D7_1209200
ProtClustDB:CLSZ2431821 Uniprot:Q8I5V6
Length = 108
Score = 121 (47.7 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 24/53 (45%), Positives = 37/53 (69%)
Query: 42 DLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRGNLYNGIFVI 94
D+ KF+++ ++VK GGR+V GTL G+D + NLVLD+ E++R N FV+
Sbjct: 20 DIKKFMNQKIRVKFDGGREVVGTLIGHDAIFNLVLDKTEEYIRDP--NDSFVV 70
>GENEDB_PFALCIPARUM|MAL8P1.48 [details] [associations]
symbol:MAL8P1.48 "small nuclear
ribonucleoprotein, putative" species:5833 "Plasmodium falciparum"
[GO:0005732 "small nucleolar ribonucleoprotein complex"
evidence=ISS] INTERPRO:IPR001163 GO:GO:0003676 GO:GO:0030529
InterPro:IPR010920 SUPFAM:SSF50182 EMBL:AL844507 Pfam:PF01423
InterPro:IPR006649 SMART:SM00651 HOGENOM:HOG000223546 KO:K11099
OMA:DLFLNVV HSSP:O29885 RefSeq:XP_001349302.1
ProteinModelPortal:Q8IB57 EnsemblProtists:MAL8P1.48:mRNA
GeneID:2655346 KEGG:pfa:MAL8P1.48 EuPathDB:PlasmoDB:PF3D7_0822300
ProtClustDB:CLSZ2432380 Uniprot:Q8IB57
Length = 83
Score = 120 (47.3 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 25/61 (40%), Positives = 36/61 (59%)
Query: 35 GRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRGNLYN-GIFV 93
G+ D KF++K +Q+ L G RQV G L+GYD +NLVLD +E + + G+ V
Sbjct: 6 GKAGPASDFRKFMEKRLQIYLNGNRQVVGILRGYDTFMNLVLDNTMEIKKDEQIDIGVVV 65
Query: 94 I 94
I
Sbjct: 66 I 66
>UNIPROTKB|A8MWD9 [details] [associations]
symbol:A8MWD9 "Small nuclear ribonucleoprotein G-like
protein" species:9606 "Homo sapiens" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] INTERPRO:IPR001163 GO:GO:0008380
GO:GO:0006397 GO:GO:0005681 GO:GO:0003723 InterPro:IPR010920
SUPFAM:SSF50182 EMBL:AC012318 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 eggNOG:COG1958 HOVERGEN:HBG000513 EMBL:CK005235
IPI:IPI00745343 UniGene:Hs.631639 ProteinModelPortal:A8MWD9
SMR:A8MWD9 STRING:A8MWD9 PaxDb:A8MWD9 PRIDE:A8MWD9
neXtProt:NX_A8MWD9 InParanoid:A8MWD9 OrthoDB:EOG4BRWND
ArrayExpress:A8MWD9 Bgee:A8MWD9 Genevestigator:A8MWD9
Uniprot:A8MWD9
Length = 76
Score = 117 (46.2 bits), Expect = 2.9e-07, P = 2.9e-07
Identities = 22/40 (55%), Positives = 28/40 (70%)
Query: 42 DLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVE 81
+L KF DK +KL GGR V G L+G+D +NLV+DE VE
Sbjct: 8 ELKKFTDKKFSLKLNGGRHVQGILRGFDPFMNLVIDECVE 47
>POMBASE|SPBC4B4.05 [details] [associations]
symbol:smg1 "U4/U6 x U5 tri-snRNP complex Sm snRNP core
protein Smg1" species:4896 "Schizosaccharomyces pombe" [GO:0000395
"mRNA 5'-splice site recognition" evidence=IC] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005681 "spliceosomal complex" evidence=IC] [GO:0005685 "U1
snRNP" evidence=IDA] [GO:0005829 "cytosol" evidence=IDA]
[GO:0045292 "mRNA cis splicing, via spliceosome" evidence=ISS]
[GO:0046540 "U4/U6 x U5 tri-snRNP complex" evidence=ISS]
PomBase:SPBC4B4.05 INTERPRO:IPR001163 GO:GO:0005829 EMBL:CU329671
GenomeReviews:CU329671_GR GO:GO:0005681 GO:GO:0003723
InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0046540 Pfam:PF01423
InterPro:IPR006649 SMART:SM00651 eggNOG:COG1958 GO:GO:0005685
GO:GO:0000395 HOGENOM:HOG000223546 KO:K11099 OMA:DLFLNVV PIR:T40477
RefSeq:NP_596422.1 ProteinModelPortal:O74966 IntAct:O74966
STRING:O74966 EnsemblFungi:SPBC4B4.05.1 GeneID:2540855
KEGG:spo:SPBC4B4.05 OrthoDB:EOG4XWK7N NextBio:20801971
Uniprot:O74966
Length = 77
Score = 109 (43.4 bits), Expect = 2.1e-06, P = 2.1e-06
Identities = 20/40 (50%), Positives = 31/40 (77%)
Query: 42 DLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVE 81
DL K++D+ V V+L G R+V G L+GYD LN+VL++++E
Sbjct: 8 DLKKYLDRQVFVQLNGSRKVYGVLRGYDIFLNIVLEDSIE 47
>UNIPROTKB|G4MXF4 [details] [associations]
symbol:MGG_10740 "Sm snRNP core protein Smg1"
species:242507 "Magnaporthe oryzae 70-15" [GO:0003674
"molecular_function" evidence=ND] INTERPRO:IPR001163 EMBL:CM001232
InterPro:IPR010920 SUPFAM:SSF50182 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 KO:K11099 RefSeq:XP_003713291.1
ProteinModelPortal:G4MXF4 EnsemblFungi:MGG_10740T0 GeneID:2676245
KEGG:mgr:MGG_10740 Uniprot:G4MXF4
Length = 88
Score = 107 (42.7 bits), Expect = 3.4e-06, P = 3.4e-06
Identities = 20/40 (50%), Positives = 30/40 (75%)
Query: 42 DLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVE 81
+L K++DK V V+L G R+V G ++GYD LN+VL++A E
Sbjct: 7 ELKKYLDKKVFVQLNGSRKVVGVVRGYDVFLNIVLEDAFE 46
>SGD|S000002965 [details] [associations]
symbol:SMX2 "Core Sm protein Sm G" species:4932
"Saccharomyces cerevisiae" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0071004 "U2-type prespliceosome" evidence=IDA] [GO:0005685 "U1
snRNP" evidence=IDA] [GO:0046540 "U4/U6 x U5 tri-snRNP complex"
evidence=IDA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IPI]
[GO:0005634 "nucleus" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0003674 "molecular_function" evidence=ND]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0005682 "U5 snRNP"
evidence=IDA] SGD:S000002965 INTERPRO:IPR001163 EMBL:D50617
EMBL:BK006940 GO:GO:0005682 GO:GO:0003723 GO:GO:0000398
InterPro:IPR010920 SUPFAM:SSF50182 EMBL:Z46255 GO:GO:0046540
GO:GO:0071004 EMBL:M20880 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 eggNOG:COG1958 GO:GO:0005685 HOGENOM:HOG000223546
KO:K11099 GeneTree:ENSGT00510000046985 OMA:VVIMEPK
OrthoDB:EOG4XWK7N EMBL:L31794 EMBL:AY558463 PIR:S48322
RefSeq:NP_116636.1 ProteinModelPortal:P40204 SMR:P40204
DIP:DIP-6683N IntAct:P40204 MINT:MINT-613464 STRING:P40204
PaxDb:P40204 EnsemblFungi:YFL017W-A GeneID:850528
KEGG:sce:YFL017W-A CYGD:YFL017w-a NextBio:966271
Genevestigator:P40204 GermOnline:YFL017W-A Uniprot:P40204
Length = 77
Score = 107 (42.7 bits), Expect = 3.4e-06, P = 3.4e-06
Identities = 19/40 (47%), Positives = 30/40 (75%)
Query: 42 DLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVE 81
+L K++DK + + + G R+V G L+GYD LN+VLD+A+E
Sbjct: 6 ELKKYMDKKILLNINGSRKVAGILRGYDIFLNVVLDDAME 45
>ASPGD|ASPL0000049189 [details] [associations]
symbol:AN1495 species:162425 "Emericella nidulans"
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IEA]
[GO:0005685 "U1 snRNP" evidence=IEA] [GO:0071004 "U2-type
prespliceosome" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0005682 "U5 snRNP" evidence=IEA] [GO:0046540 "U4/U6 x U5
tri-snRNP complex" evidence=IEA] [GO:0003674 "molecular_function"
evidence=ND] INTERPRO:IPR001163 EMBL:BN001307 GO:GO:0003676
GO:GO:0030529 InterPro:IPR010920 SUPFAM:SSF50182 Pfam:PF01423
EMBL:AACD01000023 InterPro:IPR006649 SMART:SM00651 eggNOG:COG1958
HOGENOM:HOG000223546 KO:K11099 OMA:VVIMEPK OrthoDB:EOG4XWK7N
RefSeq:XP_659099.1 ProteinModelPortal:Q5BD85 STRING:Q5BD85
EnsemblFungi:CADANIAT00008119 GeneID:2874980 KEGG:ani:AN1495.2
Uniprot:Q5BD85
Length = 78
Score = 106 (42.4 bits), Expect = 4.3e-06, P = 4.3e-06
Identities = 24/54 (44%), Positives = 34/54 (62%)
Query: 42 DLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRGNLYNGIFVIV 95
+L K+++K V +L G R+V G L+GYD +N+VLDEA E G I +IV
Sbjct: 7 ELKKYMEKRVFCELNGNRKVIGVLRGYDVFMNIVLDEAFEEKPGGEKVAIGMIV 60
>DICTYBASE|DDB_G0282863 [details] [associations]
symbol:snrpG "putative small nuclear
ribonucleoprotein G" species:44689 "Dictyostelium discoideum"
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0044351 "macropinocytosis" evidence=RCA]
dictyBase:DDB_G0282863 INTERPRO:IPR001163 GO:GO:0005634
GO:GO:0008380 EMBL:AAFI02000047 GenomeReviews:CM000152_GR
GO:GO:0006397 GO:GO:0003723 GO:GO:0030529 InterPro:IPR010920
SUPFAM:SSF50182 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
HSSP:O26745 KO:K11099 OMA:VVIMEPK RefSeq:XP_639367.1
ProteinModelPortal:Q54RX0 STRING:Q54RX0 PRIDE:Q54RX0
EnsemblProtists:DDB0233197 GeneID:8623807 KEGG:ddi:DDB_G0282863
eggNOG:NOG244831 Uniprot:Q54RX0
Length = 85
Score = 100 (40.3 bits), Expect = 1.9e-05, P = 1.9e-05
Identities = 20/49 (40%), Positives = 30/49 (61%)
Query: 33 MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVE 81
M+ K+ DL K +DK + +KL G R V G L+G+D +N+ L + VE
Sbjct: 1 MTFGKQADPDLTKLLDKKLAIKLNGNRTVHGILRGFDTFMNIALKDTVE 49
>SGD|S000006434 [details] [associations]
symbol:LSM3 "Lsm (Like Sm) protein" species:4932
"Saccharomyces cerevisiae" [GO:0005737 "cytoplasm"
evidence=IEA;IDA] [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA;TAS;IPI] [GO:0006364 "rRNA processing" evidence=IEA]
[GO:0008033 "tRNA processing" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0005688 "U6 snRNP"
evidence=IDA;TAS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=TAS;IPI] [GO:0046540 "U4/U6 x U5 tri-snRNP complex"
evidence=NAS;IDA] [GO:0005732 "small nucleolar ribonucleoprotein
complex" evidence=IPI] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0000956 "nuclear-transcribed mRNA catabolic process"
evidence=TAS] SGD:S000006434 INTERPRO:IPR001163 GO:GO:0005737
GO:GO:0005730 EMBL:BK006945 GO:GO:0003723 GO:GO:0008033
GO:GO:0000956 GO:GO:0000398 EMBL:U21094 InterPro:IPR010920
SUPFAM:SSF50182 GO:GO:0006364 GO:GO:0046540 RefSeq:NP_013543.3
GeneID:851159 KEGG:sce:YLR438C-A KO:K12622 GO:GO:0005732
GO:GO:0005688 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
eggNOG:NOG236203 GeneTree:ENSGT00390000013951 HOGENOM:HOG000223550
OMA:MVFVRGD OrthoDB:EOG4JQ77D EMBL:Z30582 EMBL:X06790 PIR:S78568
RefSeq:NP_013545.3 PDB:3BW1 PDBsum:3BW1 ProteinModelPortal:P57743
SMR:P57743 DIP:DIP-2587N IntAct:P57743 MINT:MINT-422505
STRING:P57743 PaxDb:P57743 PeptideAtlas:P57743
EnsemblFungi:YLR438C-A GeneID:851161 KEGG:sce:YLR440C
CYGD:YLR438c-a EvolutionaryTrace:P57743 NextBio:967948
Genevestigator:P57743 GermOnline:YLR438C-A Uniprot:P57743
Length = 89
Score = 100 (40.3 bits), Expect = 1.9e-05, P = 1.9e-05
Identities = 22/45 (48%), Positives = 30/45 (66%)
Query: 38 ETVLDLAKF-VDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVE 81
ET LDL K +D+ V +KL G R + GTL+ +D N+VL +AVE
Sbjct: 2 ETPLDLLKLNLDERVYIKLRGARTLVGTLQAFDSHCNIVLSDAVE 46
>UNIPROTKB|Q3ZCE0 [details] [associations]
symbol:NAA38 "N-alpha-acetyltransferase 38, NatC auxiliary
subunit" species:9913 "Bos taurus" [GO:0005634 "nucleus"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
INTERPRO:IPR001163 GO:GO:0005634 GO:GO:0008380 GO:GO:0006397
GO:GO:0003723 GO:GO:0030529 InterPro:IPR010920 SUPFAM:SSF50182
Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
GeneTree:ENSGT00570000079167 eggNOG:NOG235625 KO:K12627 OMA:NHTVSII
EMBL:AY644517 EMBL:BC102499 IPI:IPI00714062 RefSeq:NP_001029912.1
UniGene:Bt.73360 ProteinModelPortal:Q3ZCE0 SMR:Q3ZCE0 STRING:Q3ZCE0
Ensembl:ENSBTAT00000016780 GeneID:613630 KEGG:bta:613630 CTD:51691
HOVERGEN:HBG105578 InParanoid:Q3ZCE0 OrthoDB:EOG48SGVN
NextBio:20898677 Uniprot:Q3ZCE0
Length = 96
Score = 99 (39.9 bits), Expect = 2.4e-05, P = 2.4e-05
Identities = 18/39 (46%), Positives = 28/39 (71%)
Query: 43 LAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVE 81
L ++++ V V + GR + GTLKG+DQ +NL+LDE+ E
Sbjct: 5 LENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHE 43
>UNIPROTKB|O95777 [details] [associations]
symbol:NAA38 "N-alpha-acetyltransferase 38, NatC auxiliary
subunit" species:9606 "Homo sapiens" [GO:0005681 "spliceosomal
complex" evidence=IEA] [GO:0017070 "U6 snRNA binding" evidence=NAS]
[GO:0005634 "nucleus" evidence=NAS] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=NAS] [GO:0005515 "protein binding"
evidence=IPI] INTERPRO:IPR001163 GO:GO:0005634 GO:GO:0030529
EMBL:AC006389 GO:GO:0000398 InterPro:IPR010920 SUPFAM:SSF50182
GO:GO:0017070 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
eggNOG:NOG235625 KO:K12627 OMA:NHTVSII CTD:51691 HOVERGEN:HBG105578
OrthoDB:EOG48SGVN EMBL:AF182294 EMBL:BC002742 EMBL:BC022440
IPI:IPI00219871 RefSeq:NP_057284.1 UniGene:Hs.655046
ProteinModelPortal:O95777 SMR:O95777 DIP:DIP-31195N IntAct:O95777
MINT:MINT-1032595 STRING:O95777 PhosphoSite:O95777 PaxDb:O95777
PeptideAtlas:O95777 PRIDE:O95777 Ensembl:ENST00000249299
GeneID:51691 KEGG:hsa:51691 UCSC:uc003vjg.3 GeneCards:GC07P117824
HGNC:HGNC:20471 HPA:HPA020116 MIM:607288 neXtProt:NX_O95777
PharmGKB:PA165618166 InParanoid:O95777 PhylomeDB:O95777
GenomeRNAi:51691 NextBio:55698 ArrayExpress:O95777 Bgee:O95777
CleanEx:HS_LSM8 Genevestigator:O95777 GermOnline:ENSG00000128534
Uniprot:O95777
Length = 96
Score = 99 (39.9 bits), Expect = 2.4e-05, P = 2.4e-05
Identities = 18/39 (46%), Positives = 28/39 (71%)
Query: 43 LAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVE 81
L ++++ V V + GR + GTLKG+DQ +NL+LDE+ E
Sbjct: 5 LENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHE 43
>MGI|MGI:1923772 [details] [associations]
symbol:Naa38 "N(alpha)-acetyltransferase 38, NatC auxiliary
subunit" species:10090 "Mus musculus" [GO:0003674
"molecular_function" evidence=ND] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] MGI:MGI:1923772
INTERPRO:IPR001163 GO:GO:0005634 GO:GO:0008380 GO:GO:0006397
GO:GO:0003723 GO:GO:0030529 InterPro:IPR010920 SUPFAM:SSF50182
Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
GeneTree:ENSGT00570000079167 eggNOG:NOG235625 KO:K12627 OMA:NHTVSII
CTD:51691 HOVERGEN:HBG105578 OrthoDB:EOG48SGVN EMBL:AK088664
EMBL:AK167674 EMBL:BC019458 IPI:IPI00263042 RefSeq:NP_598700.1
UniGene:Mm.275158 ProteinModelPortal:Q6ZWM4 SMR:Q6ZWM4
STRING:Q6ZWM4 PhosphoSite:Q6ZWM4 PaxDb:Q6ZWM4 PRIDE:Q6ZWM4
DNASU:76522 Ensembl:ENSMUST00000056398 GeneID:76522 KEGG:mmu:76522
UCSC:uc009bao.1 InParanoid:Q6ZWM4 NextBio:345314 Bgee:Q6ZWM4
Genevestigator:Q6ZWM4 GermOnline:ENSMUSG00000044155 Uniprot:Q6ZWM4
Length = 96
Score = 99 (39.9 bits), Expect = 2.4e-05, P = 2.4e-05
Identities = 18/39 (46%), Positives = 28/39 (71%)
Query: 43 LAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVE 81
L ++++ V V + GR + GTLKG+DQ +NL+LDE+ E
Sbjct: 5 LENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHE 43
>TAIR|locus:2011246 [details] [associations]
symbol:LSM1A "SM-like 1A" species:3702 "Arabidopsis
thaliana" [GO:0005634 "nucleus" evidence=ISM;ISS] [GO:0005732
"small nucleolar ribonucleoprotein complex" evidence=ISS]
[GO:0010228 "vegetative to reproductive phase transition of
meristem" evidence=RCA] [GO:0000932 "cytoplasmic mRNA processing
body" evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0016070 "RNA metabolic process" evidence=IGI]
INTERPRO:IPR001163 EMBL:CP002684 GO:GO:0003676 GO:GO:0030529
InterPro:IPR010920 SUPFAM:SSF50182 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 KO:K12620 HSSP:Q8ZYG5 UniGene:At.15081
UniGene:At.22114 ProtClustDB:CLSN2687863 EMBL:AF411792
EMBL:AY094024 IPI:IPI00538869 RefSeq:NP_564072.1
ProteinModelPortal:Q945P8 SMR:Q945P8 STRING:Q945P8 PRIDE:Q945P8
EnsemblPlants:AT1G19120.1 GeneID:838495 KEGG:ath:AT1G19120
TAIR:At1g19120 InParanoid:Q945P8 OMA:AYERVIV PhylomeDB:Q945P8
Genevestigator:Q945P8 Uniprot:Q945P8
Length = 128
Score = 94 (38.1 bits), Expect = 8.1e-05, P = 8.1e-05
Identities = 21/47 (44%), Positives = 31/47 (65%)
Query: 43 LAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVE-FLRGNLY 88
LA ++DK + V L GR++ G L+ +DQ N VL+EA E + G+LY
Sbjct: 15 LAAYLDKKLLVLLRDGRKLMGLLRSFDQFANAVLEEAYERVIVGDLY 61
>WB|WBGene00003077 [details] [associations]
symbol:lsm-3 species:6239 "Caenorhabditis elegans"
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=IDA] INTERPRO:IPR001163 GO:GO:0009792 GO:GO:0000932
InterPro:IPR010920 SUPFAM:SSF50182 KO:K12622 Pfam:PF01423
InterPro:IPR006649 SMART:SM00651 eggNOG:NOG236203
GeneTree:ENSGT00390000013951 HOGENOM:HOG000223550 OMA:MVFVRGD
EMBL:AL132865 HSSP:Q8ZYG5 RefSeq:NP_502579.1
ProteinModelPortal:Q9U1W8 SMR:Q9U1W8 DIP:DIP-26669N
MINT:MINT-1050579 STRING:Q9U1W8 PaxDb:Q9U1W8
EnsemblMetazoa:Y62E10A.12.1 EnsemblMetazoa:Y62E10A.12.2
GeneID:178303 KEGG:cel:CELE_Y62E10A.12 UCSC:Y62E10A.12.1 CTD:178303
WormBase:Y62E10A.12 InParanoid:Q9U1W8 NextBio:900574 Uniprot:Q9U1W8
Length = 102
Score = 91 (37.1 bits), Expect = 0.00017, P = 0.00017
Identities = 21/54 (38%), Positives = 32/54 (59%)
Query: 29 KSLKMSGRKETVLDLAKF-VDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVE 81
K + +S E LDL + +D+ V VK+ R++ G L+ +DQ LN+VL E E
Sbjct: 6 KEVTLSATVEEPLDLLRLSLDERVYVKMRNDRELRGRLRAFDQHLNMVLSEVEE 59
>POMBASE|SPCC1840.10 [details] [associations]
symbol:lsm8 "U6 snRNP-associated protein Lsm8
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005681 "spliceosomal complex" evidence=NAS] [GO:0006364 "rRNA
processing" evidence=ISS] [GO:0030532 "small nuclear
ribonucleoprotein complex" evidence=ISS] [GO:0045292 "mRNA cis
splicing, via spliceosome" evidence=ISS] PomBase:SPCC1840.10
INTERPRO:IPR001163 EMBL:CU329672 GenomeReviews:CU329672_GR
GO:GO:0005681 GO:GO:0003723 InterPro:IPR010920 SUPFAM:SSF50182
GO:GO:0006364 GO:GO:0030532 GO:GO:0045292 Pfam:PF01423
InterPro:IPR006649 SMART:SM00651 PIR:T41178 RefSeq:NP_588509.1
ProteinModelPortal:O74483 IntAct:O74483 STRING:O74483
EnsemblFungi:SPCC1840.10.1 GeneID:2539322 KEGG:spo:SPCC1840.10
eggNOG:NOG235625 HOGENOM:HOG000223549 KO:K12627 OMA:NHTVSII
OrthoDB:EOG48H0D6 NextBio:20800487 Uniprot:O74483
Length = 94
Score = 90 (36.7 bits), Expect = 0.00021, P = 0.00021
Identities = 18/41 (43%), Positives = 27/41 (65%)
Query: 41 LDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVE 81
+ LA F+++ VQV GR V G+LKG+D NL+L ++ E
Sbjct: 1 MSLADFMEQRVQVITNDGRVVLGSLKGFDHTTNLILSDSFE 41
>POMBASE|SPBC9B6.05c [details] [associations]
symbol:lsm3 "U6 snRNP-associated protein Lsm3
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=ISS] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005681 "spliceosomal complex" evidence=NAS] [GO:0005688 "U6
snRNP" evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS]
[GO:0005732 "small nucleolar ribonucleoprotein complex"
evidence=ISS] [GO:0006364 "rRNA processing" evidence=ISS]
[GO:0006402 "mRNA catabolic process" evidence=ISS] [GO:0045292
"mRNA cis splicing, via spliceosome" evidence=ISS] [GO:0046540
"U4/U6 x U5 tri-snRNP complex" evidence=ISS] PomBase:SPBC9B6.05c
INTERPRO:IPR001163 GO:GO:0005730 EMBL:CU329671
GenomeReviews:CU329671_GR GO:GO:0005681 GO:GO:0003723 GO:GO:0006402
InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0006364 GO:GO:0046540
GO:GO:0045292 KO:K12622 GO:GO:0005732 GO:GO:0005688 Pfam:PF01423
InterPro:IPR006649 SMART:SM00651 eggNOG:COG1958
HOGENOM:HOG000223550 OMA:MVFVRGD PIR:T40786 RefSeq:NP_595747.1
PDB:4EMG PDBsum:4EMG ProteinModelPortal:Q9Y7M4 IntAct:Q9Y7M4
STRING:Q9Y7M4 EnsemblFungi:SPBC9B6.05c.1 GeneID:2540212
KEGG:spo:SPBC9B6.05c OrthoDB:EOG4JQ77D NextBio:20801344
Uniprot:Q9Y7M4
Length = 93
Score = 88 (36.0 bits), Expect = 0.00035, P = 0.00035
Identities = 20/44 (45%), Positives = 29/44 (65%)
Query: 41 LDLAKF-VDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFL 83
LDL + +D+ V VKL G R++ G L YD+ LN+VL +A E +
Sbjct: 11 LDLVRLSLDEIVYVKLRGDRELNGRLHAYDEHLNMVLGDAEEIV 54
>TAIR|locus:2087522 [details] [associations]
symbol:LSM1B "SM-like 1B" species:3702 "Arabidopsis
thaliana" [GO:0005634 "nucleus" evidence=ISM;ISS] [GO:0005732
"small nucleolar ribonucleoprotein complex" evidence=ISS]
[GO:0010228 "vegetative to reproductive phase transition of
meristem" evidence=RCA] [GO:0000932 "cytoplasmic mRNA processing
body" evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0016070 "RNA metabolic process" evidence=IGI]
INTERPRO:IPR001163 EMBL:CP002686 GenomeReviews:BA000014_GR
InterPro:IPR010920 SUPFAM:SSF50182 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 HOGENOM:HOG000223544 KO:K12620 eggNOG:COG1958
HSSP:Q8ZYG5 EMBL:AY084768 EMBL:BT002795 EMBL:BT004340
IPI:IPI00537844 RefSeq:NP_566476.1 RefSeq:NP_850580.1
UniGene:At.39294 ProteinModelPortal:Q8LFL8 SMR:Q8LFL8 IntAct:Q8LFL8
STRING:Q8LFL8 PaxDb:Q8LFL8 PRIDE:Q8LFL8 EnsemblPlants:AT3G14080.1
EnsemblPlants:AT3G14080.2 GeneID:820624 KEGG:ath:AT3G14080
TAIR:At3g14080 InParanoid:Q8LFL8 OMA:TEREELP PhylomeDB:Q8LFL8
ProtClustDB:CLSN2687863 ArrayExpress:Q8LFL8 Genevestigator:Q8LFL8
Uniprot:Q8LFL8
Length = 128
Score = 88 (36.0 bits), Expect = 0.00035, P = 0.00035
Identities = 25/71 (35%), Positives = 40/71 (56%)
Query: 31 LKMSGRKETVLD--LAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVE-FLRGNL 87
+ +G +E L LA ++D+ + V L GR++ GTL+ +DQ N VL+ A E + G
Sbjct: 1 MSWAGPEEIYLSTSLASYLDRKLLVLLRDGRKLMGTLRSFDQFANAVLEGACERVIVGEQ 60
Query: 88 YN----GIFVI 94
Y G++VI
Sbjct: 61 YCDIPLGLYVI 71
>FB|FBgn0261067 [details] [associations]
symbol:LSm1 species:7227 "Drosophila melanogaster"
[GO:0030532 "small nuclear ribonucleoprotein complex" evidence=ISS]
[GO:0005681 "spliceosomal complex" evidence=ISS] [GO:0006396 "RNA
processing" evidence=ISS] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=ISS] [GO:0033962 "cytoplasmic mRNA processing
body assembly" evidence=IMP] INTERPRO:IPR001163 EMBL:AE013599
GO:GO:0005681 GO:GO:0000398 GO:GO:0033962 InterPro:IPR010920
SUPFAM:SSF50182 GO:GO:0030532 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 CTD:27257 GeneTree:ENSGT00570000079167 KO:K12620
OMA:IERIHVG HSSP:Q8ZYG5 EMBL:BT022249 RefSeq:NP_611559.1
UniGene:Dm.26990 SMR:Q9W2K2 IntAct:Q9W2K2 MINT:MINT-289058
STRING:Q9W2K2 EnsemblMetazoa:FBtr0071628 GeneID:37413
KEGG:dme:Dmel_CG4279 UCSC:CG4279-RA FlyBase:FBgn0261067
InParanoid:Q9W2K2 OrthoDB:EOG4GTHWB GenomeRNAi:37413 NextBio:803505
Uniprot:Q9W2K2
Length = 137
Score = 87 (35.7 bits), Expect = 0.00045, P = 0.00045
Identities = 23/57 (40%), Positives = 31/57 (54%)
Query: 43 LAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLR-GNLYN----GIFVI 94
L + VDK + V L GR + G L+ DQ NLVL +E + GN Y G+F+I
Sbjct: 13 LLEEVDKKLMVLLRDGRTLIGYLRSVDQFANLVLQRTIERIHVGNEYGDIPRGVFII 69
>FB|FBgn0035271 [details] [associations]
symbol:CG2021 species:7227 "Drosophila melanogaster"
[GO:0005688 "U6 snRNP" evidence=ISS;NAS] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC;ISS] [GO:0030532 "small
nuclear ribonucleoprotein complex" evidence=ISS] [GO:0005681
"spliceosomal complex" evidence=ISS] [GO:0071011 "precatalytic
spliceosome" evidence=IDA] INTERPRO:IPR001163 EMBL:AE014296
GO:GO:0071011 GO:GO:0000398 InterPro:IPR010920 SUPFAM:SSF50182
GO:GO:0005688 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
GeneTree:ENSGT00570000079167 eggNOG:NOG235625 KO:K12627 OMA:NHTVSII
HSSP:P14678 EMBL:BT023632 RefSeq:NP_647660.1 UniGene:Dm.31160
SMR:Q9W087 IntAct:Q9W087 MINT:MINT-302001 STRING:Q9W087
EnsemblMetazoa:FBtr0072791 GeneID:38229 KEGG:dme:Dmel_CG2021
UCSC:CG2021-RA FlyBase:FBgn0035271 InParanoid:Q9W087
OrthoDB:EOG4MCVH1 GenomeRNAi:38229 NextBio:807639 Uniprot:Q9W087
Length = 95
Score = 85 (35.0 bits), Expect = 0.00073, P = 0.00072
Identities = 15/39 (38%), Positives = 24/39 (61%)
Query: 43 LAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVE 81
L +++ V + GR GTLKG+DQ +N+++DE E
Sbjct: 4 LESYINHTVSIITADGRNFIGTLKGFDQTINIIIDECHE 42
>UNIPROTKB|P62312 [details] [associations]
symbol:LSM6 "U6 snRNA-associated Sm-like protein LSm6"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0006364 "rRNA
processing" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008033 "tRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=TAS] [GO:0030532 "small nuclear
ribonucleoprotein complex" evidence=TAS] [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=TAS] [GO:0005829 "cytosol"
evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0016070 "RNA metabolic process" evidence=TAS] [GO:0016071 "mRNA
metabolic process" evidence=TAS] [GO:0043928 "exonucleolytic
nuclear-transcribed mRNA catabolic process involved in
deadenylation-dependent decay" evidence=TAS] [GO:0005515 "protein
binding" evidence=IPI] Reactome:REACT_71 Reactome:REACT_21257
EMBL:AJ238098 INTERPRO:IPR001163 GO:GO:0005829 GO:GO:0008380
GO:GO:0006397 GO:GO:0003723 EMBL:CH471056 GO:GO:0008033
InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0006364 GO:GO:0030532
GO:GO:0043928 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
eggNOG:COG1958 KO:K12625 EMBL:AF182292 EMBL:AK312126 EMBL:AC097372
EMBL:BC016026 IPI:IPI00001146 RefSeq:NP_009011.1 UniGene:Hs.190520
ProteinModelPortal:P62312 SMR:P62312 DIP:DIP-31128N IntAct:P62312
STRING:P62312 PhosphoSite:P62312 DMDM:61227727 PaxDb:P62312
PeptideAtlas:P62312 PRIDE:P62312 DNASU:11157
Ensembl:ENST00000296581 Ensembl:ENST00000502781
Ensembl:ENST00000504181 Ensembl:ENST00000515311 GeneID:11157
KEGG:hsa:11157 UCSC:uc003ikq.4 CTD:11157 GeneCards:GC04P147097
HGNC:HGNC:17017 HPA:HPA045079 MIM:607286 neXtProt:NX_P62312
PharmGKB:PA128394584 HOVERGEN:HBG052369 InParanoid:P62312
OMA:YISTSTK OrthoDB:EOG4Q2DH6 PhylomeDB:P62312 GenomeRNAi:11157
NextBio:42433 ArrayExpress:P62312 Bgee:P62312 CleanEx:HS_LSM6
Genevestigator:P62312 GermOnline:ENSG00000164167 Uniprot:P62312
Length = 80
Score = 84 (34.6 bits), Expect = 0.00093, P = 0.00093
Identities = 21/58 (36%), Positives = 30/58 (51%)
Query: 33 MSGRKETVLDLAK-FVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRGNLYN 89
MS RK+T D K + + V VKL G G L D +N+ L++ E++ G L N
Sbjct: 1 MSLRKQTPSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKN 58
>MGI|MGI:1925901 [details] [associations]
symbol:Lsm6 "LSM6 homolog, U6 small nuclear RNA associated
(S. cerevisiae)" species:10090 "Mus musculus" [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0006402 "mRNA catabolic process" evidence=ISO] [GO:0008033
"tRNA processing" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0046982 "protein heterodimerization activity" evidence=ISO]
MGI:MGI:1925901 INTERPRO:IPR001163 GO:GO:0005634 GO:GO:0005737
GO:GO:0008380 GO:GO:0006397 GO:GO:0003723 GO:GO:0030529
GO:GO:0008033 InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0006364
Pfam:PF01423 InterPro:IPR006649 SMART:SM00651 eggNOG:COG1958
KO:K12625 CTD:11157 HOVERGEN:HBG052369 OMA:YISTSTK
OrthoDB:EOG4Q2DH6 EMBL:AK019126 EMBL:BC030427 IPI:IPI00129873
RefSeq:NP_001177933.1 RefSeq:NP_084421.1 UniGene:Mm.28694
ProteinModelPortal:P62313 SMR:P62313 STRING:P62313
PhosphoSite:P62313 PaxDb:P62313 PRIDE:P62313
Ensembl:ENSMUST00000051867 Ensembl:ENSMUST00000130325 GeneID:78651
KEGG:mmu:78651 InParanoid:P62313 NextBio:349274 Bgee:P62313
Genevestigator:P62313 GermOnline:ENSMUSG00000031683 Uniprot:P62313
Length = 80
Score = 84 (34.6 bits), Expect = 0.00093, P = 0.00093
Identities = 21/58 (36%), Positives = 30/58 (51%)
Query: 33 MSGRKETVLDLAK-FVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRGNLYN 89
MS RK+T D K + + V VKL G G L D +N+ L++ E++ G L N
Sbjct: 1 MSLRKQTPSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKN 58
>TAIR|locus:2080487 [details] [associations]
symbol:LSM6A "AT3G59810" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISS] [GO:0005732 "small nucleolar
ribonucleoprotein complex" evidence=ISS] INTERPRO:IPR001163
EMBL:CP002686 EMBL:AL138647 InterPro:IPR010920 SUPFAM:SSF50182
Pfam:PF01423 InterPro:IPR006649 SMART:SM00651 HSSP:P54999 KO:K12625
OMA:YISTSTK ProtClustDB:CLSN2683093 EMBL:BT002850 EMBL:BT004433
IPI:IPI00517943 PIR:T47805 RefSeq:NP_191540.1 UniGene:At.34551
ProteinModelPortal:Q9M1Z3 SMR:Q9M1Z3 IntAct:Q9M1Z3 STRING:Q9M1Z3
PRIDE:Q9M1Z3 EnsemblPlants:AT3G59810.1 GeneID:825150
KEGG:ath:AT3G59810 TAIR:At3g59810 InParanoid:Q9M1Z3
PhylomeDB:Q9M1Z3 ArrayExpress:Q9M1Z3 Genevestigator:Q9M1Z3
Uniprot:Q9M1Z3
Length = 91
Score = 84 (34.6 bits), Expect = 0.00093, P = 0.00093
Identities = 20/59 (33%), Positives = 31/59 (52%)
Query: 32 KMSGRKETVLDLAKFV-DKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRGNLYN 89
K+SG +T D K + + V VKL G GTL D +N+ +++ E++ G L N
Sbjct: 7 KVSGTTKTPADFLKSIRGRPVVVKLNSGVDYRGTLTCLDGYMNIAMEQTEEYVNGQLKN 65
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.331 0.146 0.420 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 102 102 0.00091 102 3 11 21 0.44 29
29 0.48 31
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 43
No. of states in DFA: 409 (44 KB)
Total size of DFA: 79 KB (2065 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 10.83u 0.15s 10.98t Elapsed: 00:00:01
Total cpu time: 10.84u 0.15s 10.99t Elapsed: 00:00:01
Start: Mon May 20 15:36:00 2013 End: Mon May 20 15:36:01 2013