BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 034180
(102 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O74499|LSM7_SCHPO U6 snRNA-associated Sm-like protein LSm7 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=lsm7 PE=1 SV=1
Length = 113
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 31/55 (56%), Positives = 43/55 (78%), Gaps = 1/55 (1%)
Query: 36 RKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRGNLYNG 90
RKE++LDL+++ D+ +Q TGGRQ+TG LKG+DQL+NLVLD+ E LR N +G
Sbjct: 21 RKESILDLSRYQDQRIQATFTGGRQITGILKGFDQLMNLVLDDVEEQLR-NPEDG 74
>sp|Q9UK45|LSM7_HUMAN U6 snRNA-associated Sm-like protein LSm7 OS=Homo sapiens GN=LSM7
PE=1 SV=1
Length = 103
Score = 66.6 bits (161), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 28/53 (52%), Positives = 42/53 (79%)
Query: 32 KMSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLR 84
K +KE++LDL+K++DK ++VK GGR+ +G LKG+D LLNLVLD +E++R
Sbjct: 4 KEKKKKESILDLSKYIDKTIRVKFQGGREASGILKGFDPLLNLVLDGTIEYMR 56
>sp|Q9CQQ8|LSM7_MOUSE U6 snRNA-associated Sm-like protein LSm7 OS=Mus musculus GN=Lsm7
PE=3 SV=1
Length = 103
Score = 65.5 bits (158), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 28/53 (52%), Positives = 42/53 (79%)
Query: 32 KMSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLR 84
K +KE++LDL+K++DK ++VK GGR+ +G LKG+D LLNLVLD +E++R
Sbjct: 4 KEKKKKESILDLSKYIDKTIRVKFQGGREASGILKGFDPLLNLVLDGTMEYMR 56
>sp|Q54HF6|LSM7_DICDI Probable U6 snRNA-associated Sm-like protein LSm7
OS=Dictyostelium discoideum GN=lsm7 PE=3 SV=1
Length = 97
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 29/51 (56%), Positives = 40/51 (78%)
Query: 34 SGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLR 84
+ +KE++LDL KF+ K + VK TGGR+V G LKGYDQL+N+ LD+ EF+R
Sbjct: 6 NPKKESILDLQKFLGKEICVKFTGGREVQGILKGYDQLVNITLDQTQEFIR 56
>sp|P53905|LSM7_YEAST U6 snRNA-associated Sm-like protein LSm7 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=LSM7 PE=1
SV=2
Length = 115
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 28/48 (58%), Positives = 39/48 (81%)
Query: 36 RKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFL 83
++E +LDLAK+ D ++VKL GG+ V G LKGYDQL+NLVLD+ VE++
Sbjct: 23 KREAILDLAKYKDSKIRVKLMGGKLVIGVLKGYDQLMNLVLDDTVEYM 70
>sp|O82221|RUXG_ARATH Probable small nuclear ribonucleoprotein G OS=Arabidopsis
thaliana GN=At2g23930 PE=2 SV=1
Length = 80
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 39/60 (65%), Gaps = 1/60 (1%)
Query: 36 RKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRGNLYNGIFVIV 95
R DL K++DK +Q+KL R VTGTL+G+DQ +NLV+D VE + GN I ++V
Sbjct: 3 RSGQPPDLKKYMDKKLQIKLNANRMVTGTLRGFDQFMNLVVDNTVE-VNGNDKTDIGMVV 61
>sp|P62309|RUXG_MOUSE Small nuclear ribonucleoprotein G OS=Mus musculus GN=Snrpg PE=1
SV=1
Length = 76
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 36/59 (61%)
Query: 37 KETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRGNLYNGIFVIV 95
K +L KF+DK + +KL GGR V G L+G+D +NLV+DE VE N I ++V
Sbjct: 3 KAHPPELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNIGMVV 61
>sp|P62308|RUXG_HUMAN Small nuclear ribonucleoprotein G OS=Homo sapiens GN=SNRPG PE=1
SV=1
Length = 76
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 36/59 (61%)
Query: 37 KETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRGNLYNGIFVIV 95
K +L KF+DK + +KL GGR V G L+G+D +NLV+DE VE N I ++V
Sbjct: 3 KAHPPELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNIGMVV 61
>sp|Q3ZBL0|RUXG_BOVIN Small nuclear ribonucleoprotein G OS=Bos taurus GN=SNRPG PE=3
SV=1
Length = 76
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 36/59 (61%)
Query: 37 KETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRGNLYNGIFVIV 95
K +L KF+DK + +KL GGR V G L+G+D +NLV+DE VE N I ++V
Sbjct: 3 KAHPPELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNIGMVV 61
>sp|Q9VXE0|RUXG_DROME Probable small nuclear ribonucleoprotein G OS=Drosophila
melanogaster GN=SmG PE=3 SV=1
Length = 76
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 39/59 (66%)
Query: 37 KETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRGNLYNGIFVIV 95
K ++ K++DK + +KL GGR VTG L+G+D +N+VLD+ VE + N N I ++V
Sbjct: 3 KAHPPEVKKYMDKRMMLKLNGGRAVTGILRGFDPFMNVVLDDTVEECKDNTKNNIGMVV 61
>sp|Q9N4G9|RUXG_CAEEL Probable small nuclear ribonucleoprotein G OS=Caenorhabditis
elegans GN=snr-7 PE=3 SV=1
Length = 77
Score = 52.4 bits (124), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 42/60 (70%), Gaps = 2/60 (3%)
Query: 37 KETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLR--GNLYNGIFVI 94
K +L K++DK + +KL G R+V+G L+G+D +N+V+DEAVE+ + G++ G+ VI
Sbjct: 3 KTHPPELKKYMDKEMDLKLNGNRRVSGILRGFDPFMNMVIDEAVEYQKDGGSVNLGMTVI 62
>sp|A8MWD9|RUXGL_HUMAN Small nuclear ribonucleoprotein G-like protein OS=Homo sapiens
PE=2 SV=2
Length = 76
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 29/46 (63%)
Query: 37 KETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEF 82
K +L KF DK +KL GGR V G L+G+D +NLV+DE VE
Sbjct: 3 KAHPPELKKFTDKKFSLKLNGGRHVQGILRGFDPFMNLVIDECVEM 48
>sp|P24715|RUXG_MEDSA Probable small nuclear ribonucleoprotein G OS=Medicago sativa
GN=C29 PE=3 SV=1
Length = 81
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 36/53 (67%), Gaps = 1/53 (1%)
Query: 43 LAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRGNLYNGIFVIV 95
L K++DK +Q+ L R + GTL+G+DQ +NLV+D VE + GN N I ++V
Sbjct: 10 LKKYMDKQLQINLKANRMIVGTLRGFDQFMNLVVDNTVE-VNGNEKNDIGMVV 61
>sp|P40204|RUXG_YEAST Small nuclear ribonucleoprotein G OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=SMX2 PE=1 SV=1
Length = 77
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 31/44 (70%)
Query: 39 TVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEF 82
+ +L K++DK + + + G R+V G L+GYD LN+VLD+A+E
Sbjct: 3 STPELKKYMDKKILLNINGSRKVAGILRGYDIFLNVVLDDAMEI 46
>sp|O74966|RUXG_SCHPO Small nuclear ribonucleoprotein G OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=smg1 PE=1 SV=1
Length = 77
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 32/45 (71%)
Query: 37 KETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVE 81
K DL K++D+ V V+L G R+V G L+GYD LN+VL++++E
Sbjct: 3 KAGAPDLKKYLDRQVFVQLNGSRKVYGVLRGYDIFLNIVLEDSIE 47
>sp|Q5RCP3|NAA38_PONAB N-alpha-acetyltransferase 38, NatC auxiliary subunit OS=Pongo
abelii GN=NAA38 PE=3 SV=3
Length = 96
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 28/39 (71%)
Query: 43 LAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVE 81
L ++++ V V + GR + GTLKG+DQ +NL+LDE+ E
Sbjct: 5 LENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHE 43
>sp|Q6ZWM4|NAA38_MOUSE N-alpha-acetyltransferase 38, NatC auxiliary subunit OS=Mus
musculus GN=Naa38 PE=3 SV=3
Length = 96
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 28/39 (71%)
Query: 43 LAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVE 81
L ++++ V V + GR + GTLKG+DQ +NL+LDE+ E
Sbjct: 5 LENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHE 43
>sp|O95777|NAA38_HUMAN N-alpha-acetyltransferase 38, NatC auxiliary subunit OS=Homo
sapiens GN=NAA38 PE=1 SV=3
Length = 96
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 28/39 (71%)
Query: 43 LAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVE 81
L ++++ V V + GR + GTLKG+DQ +NL+LDE+ E
Sbjct: 5 LENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHE 43
>sp|Q3ZCE0|NAA38_BOVIN N-alpha-acetyltransferase 38, NatC auxiliary subunit OS=Bos
taurus GN=NAA38 PE=3 SV=3
Length = 96
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 28/39 (71%)
Query: 43 LAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVE 81
L ++++ V V + GR + GTLKG+DQ +NL+LDE+ E
Sbjct: 5 LENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHE 43
>sp|Q54RX0|RUXG_DICDI Probable small nuclear ribonucleoprotein G OS=Dictyostelium
discoideum GN=snrpG PE=3 SV=1
Length = 85
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 28/45 (62%)
Query: 37 KETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVE 81
K+ DL K +DK + +KL G R V G L+G+D +N+ L + VE
Sbjct: 5 KQADPDLTKLLDKKLAIKLNGNRTVHGILRGFDTFMNIALKDTVE 49
>sp|Q8PZZ9|RUXX_METMA Putative snRNP Sm-like protein OS=Methanosarcina mazei (strain
ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM
88) GN=MM_0339 PE=3 SV=1
Length = 72
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
Query: 33 MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRG 85
M+ R +L+ A +D V V+L G R+ G LKGYD +NLVLD A E G
Sbjct: 1 MANRPLDILNNA--LDTPVIVRLKGAREFRGELKGYDIHMNLVLDNAEELREG 51
>sp|Q465S1|RUXX_METBF Putative snRNP Sm-like protein OS=Methanosarcina barkeri (strain
Fusaro / DSM 804) GN=Mbar_A3500 PE=3 SV=1
Length = 72
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
Query: 33 MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRG 85
M+ R +L+ A +D V V+L G R+ G LKGYD +NLVLD A E G
Sbjct: 1 MANRPLDILNNA--LDTPVIVRLKGAREFRGELKGYDIHMNLVLDNAEELREG 51
>sp|Q8TL47|RUXX_METAC Putative snRNP Sm-like protein OS=Methanosarcina acetivorans
(strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A)
GN=MA_3195 PE=3 SV=1
Length = 72
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
Query: 33 MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRG 85
M+ R +L+ A +D V V+L G R+ G LKGYD +NLVLD A E G
Sbjct: 1 MANRPLDILNNA--LDTPVIVRLKGAREFRGELKGYDIHMNLVLDNAEELRDG 51
>sp|Q0W8R9|RUXX_UNCMA Putative snRNP Sm-like protein OS=Uncultured methanogenic
archaeon RC-I GN=UNCMA_29510 PE=3 SV=1
Length = 72
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 31/50 (62%), Gaps = 2/50 (4%)
Query: 33 MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEF 82
MS R VL+ A ++ V V+L GGR+ G L+GYD +NLVLD A E
Sbjct: 1 MSQRPLDVLNEA--LNSPVIVRLKGGREFRGELQGYDMHMNLVLDNAEEL 48
>sp|P57743|LSM3_YEAST U6 snRNA-associated Sm-like protein LSm3 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=LSM3 PE=1
SV=1
Length = 89
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 31/47 (65%), Gaps = 1/47 (2%)
Query: 38 ETVLDLAKF-VDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFL 83
ET LDL K +D+ V +KL G R + GTL+ +D N+VL +AVE +
Sbjct: 2 ETPLDLLKLNLDERVYIKLRGARTLVGTLQAFDSHCNIVLSDAVETI 48
>sp|Q12U30|RUXX_METBU Putative snRNP Sm-like protein OS=Methanococcoides burtonii
(strain DSM 6242) GN=Mbur_2181 PE=3 SV=1
Length = 72
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
Query: 33 MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRGNL 87
M R +L+ A ++ V V+L G R+ G L+GYD +NLVLDEA E G +
Sbjct: 1 MGNRPLDILNDA--LNTSVIVRLKGAREFRGVLQGYDVHMNLVLDEAEELKDGEI 53
>sp|O74483|LSM8_SCHPO U6 snRNA-associated Sm-like protein LSm8 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=lsm8 PE=3 SV=1
Length = 94
Score = 37.7 bits (86), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 27/41 (65%)
Query: 41 LDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVE 81
+ LA F+++ VQV GR V G+LKG+D NL+L ++ E
Sbjct: 1 MSLADFMEQRVQVITNDGRVVLGSLKGFDHTTNLILSDSFE 41
>sp|Q9YEQ5|RUXX_AERPE Putative snRNP Sm-like protein OS=Aeropyrum pernix (strain ATCC
700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1)
GN=APE_0525a PE=3 SV=1
Length = 77
Score = 37.7 bits (86), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 24/37 (64%)
Query: 46 FVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEF 82
+VD V VKL G ++ G LK YDQ LN++L +A E
Sbjct: 16 YVDTPVLVKLKSGLRIKGVLKTYDQHLNIILGDAEEI 52
>sp|Q9Y7M4|LSM3_SCHPO Probable U6 snRNA-associated Sm-like protein LSm3
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=lsm3 PE=1 SV=2
Length = 93
Score = 37.4 bits (85), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Query: 41 LDLAKF-VDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFL 83
LDL + +D+ V VKL G R++ G L YD+ LN+VL +A E +
Sbjct: 11 LDLVRLSLDEIVYVKLRGDRELNGRLHAYDEHLNMVLGDAEEIV 54
>sp|O29386|RUXX_ARCFU Putative snRNP Sm-like protein OS=Archaeoglobus fulgidus (strain
ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126)
GN=AF_0875 PE=1 SV=1
Length = 77
Score = 36.2 bits (82), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 30/53 (56%)
Query: 43 LAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRGNLYNGIFVIV 95
L + + V V+L GGR+ GTL GYD +NLVL +A E G + + +V
Sbjct: 9 LNRSLKSPVIVRLKGGREFRGTLDGYDIHMNLVLLDAEEIQNGEVVRKVGSVV 61
>sp|P40089|LSM5_YEAST U6 snRNA-associated Sm-like protein LSm5 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=LSM5 PE=1
SV=1
Length = 93
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 28/41 (68%)
Query: 43 LAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFL 83
+ K +++ V + L R+ GTL G+D +N++L++AVE+L
Sbjct: 12 IDKTINQKVLIVLQSNREFEGTLVGFDDFVNVILEDAVEWL 52
>sp|Q8SQH7|LSMH_ENCCU Probable U6 snRNA-associated Sm-like protein OS=Encephalitozoon
cuniculi (strain GB-M1) GN=ECU07_1830 PE=3 SV=1
Length = 70
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 30/52 (57%), Gaps = 8/52 (15%)
Query: 43 LAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVL--------DEAVEFLRGN 86
L ++ + V+VK G TGTL+G+D+ +NL+L ++ V FLRG
Sbjct: 8 LKMYLKERVEVKTKSGEAYTGTLEGFDEHINLMLTCSSVEGSEDKVLFLRGE 59
>sp|Q6BR90|LSM6_DEBHA U6 snRNA-associated Sm-like protein LSm6 OS=Debaryomyces hansenii
(strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 /
IGC 2968) GN=LSM6 PE=3 SV=2
Length = 85
Score = 33.9 bits (76), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Query: 28 LKSLKMSGRKETVLD--LAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRG 85
+K SG + T L++ + V V+L G + G L+ D +N+VLDE EF+ G
Sbjct: 4 IKKESSSGSENTGPSVFLSEIIGSSVTVRLHNGVEYLGNLQSIDGYMNIVLDETKEFVGG 63
Query: 86 N 86
+
Sbjct: 64 D 64
>sp|Q1ZXK3|LSM3_DICDI Probable U6 snRNA-associated Sm-like protein LSm3
OS=Dictyostelium discoideum GN=lsm3 PE=3 SV=1
Length = 97
Score = 33.9 bits (76), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 32 KMSGRKETVLDLAKF-VDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLR 84
+ G E LDL + +D+ + VK+ R++ G L YDQ LN++L + E ++
Sbjct: 4 REEGTVEEPLDLIRLSLDERIFVKMRQDRELRGKLHAYDQHLNMILSDVEETIK 57
>sp|P57670|RUXX_THEAC Putative snRNP Sm-like protein OS=Thermoplasma acidophilum
(strain ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 /
AMRC-C165) GN=Ta1240 PE=3 SV=1
Length = 83
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 25/43 (58%)
Query: 43 LAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRG 85
L + + V + + G R+ +G L+GYD +N+VL A E + G
Sbjct: 14 LKSALSRNVLIDVKGNREYSGILEGYDVYMNIVLQNASEIING 56
>sp|Q97BU5|RUXX_THEVO Putative snRNP Sm-like protein OS=Thermoplasma volcanium (strain
ATCC 51530 / DSM 4299 / JCM 9571 / NBRC 15438 / GSS1)
GN=TV0360 PE=3 SV=2
Length = 83
Score = 33.9 bits (76), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 25/43 (58%)
Query: 43 LAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRG 85
L + + V + + G R+ +G L+GYD +N+VL A E + G
Sbjct: 14 LKNALSRNVLIDVKGNREYSGILEGYDVYMNVVLQNASEIING 56
>sp|Q8VC85|LSM1_MOUSE U6 snRNA-associated Sm-like protein LSm1 OS=Mus musculus GN=Lsm1
PE=2 SV=1
Length = 133
Score = 33.5 bits (75), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 31/57 (54%), Gaps = 5/57 (8%)
Query: 43 LAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLR-----GNLYNGIFVI 94
L + +DK V L GR + G L+ DQ NLVL + VE + G++ GIFV+
Sbjct: 10 LIEDIDKKHLVLLRDGRTLIGFLRSIDQFANLVLHQTVERIHVGKKYGDIPRGIFVV 66
>sp|Q5E9Z8|LSM1_BOVIN U6 snRNA-associated Sm-like protein LSm1 OS=Bos taurus GN=LSM1
PE=2 SV=1
Length = 133
Score = 33.5 bits (75), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 31/57 (54%), Gaps = 5/57 (8%)
Query: 43 LAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLR-----GNLYNGIFVI 94
L + +DK V L GR + G L+ DQ NLVL + VE + G++ GIFV+
Sbjct: 10 LIEDIDKKHLVLLRDGRTLIGFLRSIDQFANLVLHQTVERIHVGKKYGDIPRGIFVV 66
>sp|O15116|LSM1_HUMAN U6 snRNA-associated Sm-like protein LSm1 OS=Homo sapiens GN=LSM1
PE=1 SV=1
Length = 133
Score = 33.5 bits (75), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 31/57 (54%), Gaps = 5/57 (8%)
Query: 43 LAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLR-----GNLYNGIFVI 94
L + +DK V L GR + G L+ DQ NLVL + VE + G++ GIFV+
Sbjct: 10 LIEDIDKKHLVLLRDGRTLIGFLRSIDQFANLVLHQTVERIHVGKKYGDIPRGIFVV 66
>sp|P62311|LSM3_MOUSE U6 snRNA-associated Sm-like protein LSm3 OS=Mus musculus GN=Lsm3
PE=3 SV=2
Length = 102
Score = 33.5 bits (75), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 38 ETVLDLAKF-VDKGVQVKLTGGRQVTGTLKGYDQLLNLVL 76
E LDL + +D+ + VK+ R++ G L YDQ LN++L
Sbjct: 15 EEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMIL 54
>sp|P62310|LSM3_HUMAN U6 snRNA-associated Sm-like protein LSm3 OS=Homo sapiens GN=LSM3
PE=1 SV=2
Length = 102
Score = 33.5 bits (75), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 38 ETVLDLAKF-VDKGVQVKLTGGRQVTGTLKGYDQLLNLVL 76
E LDL + +D+ + VK+ R++ G L YDQ LN++L
Sbjct: 15 EEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMIL 54
>sp|Q32PE9|LSM3_BOVIN U6 snRNA-associated Sm-like protein LSm3 OS=Bos taurus GN=LSM3
PE=3 SV=3
Length = 102
Score = 33.5 bits (75), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 38 ETVLDLAKF-VDKGVQVKLTGGRQVTGTLKGYDQLLNLVL 76
E LDL + +D+ + VK+ R++ G L YDQ LN++L
Sbjct: 15 EEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMIL 54
>sp|O26745|RUXX_METTH Putative snRNP Sm-like protein OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=MTH_649 PE=1 SV=1
Length = 81
Score = 32.7 bits (73), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 25/43 (58%)
Query: 43 LAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRG 85
L ++ V +KL G R+ G LK +D +NLVL++A E G
Sbjct: 18 LGNSLNSPVIIKLKGDREFRGVLKSFDLHMNLVLNDAEELEDG 60
>sp|A1CE19|LSM6_ASPCL U6 snRNA-associated Sm-like protein LSm6 OS=Aspergillus clavatus
(strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 3887 /
NRRL 1) GN=lsm6 PE=3 SV=2
Length = 78
Score = 32.3 bits (72), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 28 LKSLKMSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRGNL 87
++++ GR + L++ + V VKL G G L+ D +N+ L+++ EF+ G L
Sbjct: 1 MENISSEGRDPSAF-LSEIIGAPVTVKLNSGVVYKGELQSVDGYMNIALEQSKEFMDGKL 59
>sp|Q1ZXD5|NAA38_DICDI N-alpha-acetyltransferase 38, NatC auxiliary subunit
OS=Dictyostelium discoideum GN=lsm8 PE=3 SV=1
Length = 94
Score = 32.3 bits (72), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Query: 43 LAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRGNLYNGIFVI 94
L ++ K V V GR + GTL+G DQ +N+VL++ E + + GI VI
Sbjct: 4 LESYLKKQVLVLTADGRSIIGTLRGIDQTINVVLEKCHERVYSD--EGIEVI 53
>sp|P87173|LSM1_SCHPO U6 snRNA-associated Sm-like protein LSm1 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=lsm1 PE=3 SV=1
Length = 140
Score = 32.3 bits (72), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 33/57 (57%), Gaps = 5/57 (8%)
Query: 43 LAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEF-----LRGNLYNGIFVI 94
L +VD+ V V L G+++ G L+ +DQ NL+L +E + G++ G++++
Sbjct: 16 LVDYVDRKVIVVLRDGKKLIGILRSFDQFANLMLQYTIERIYVDDMYGDIDRGVYIV 72
>sp|P47017|LSM1_YEAST Sm-like protein LSm1 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=LSM1 PE=1 SV=1
Length = 172
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 30/55 (54%), Gaps = 7/55 (12%)
Query: 47 VDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVE---FLRGNLY----NGIFVI 94
VD+ + V L GR + G L+ +DQ NL+L + VE F N Y GIF+I
Sbjct: 50 VDRKIFVLLRDGRMLFGVLRTFDQYANLILQDCVERIYFSEENKYAEEDRGIFMI 104
>sp|Q2FTC7|COBQ_METHJ Probable cobyric acid synthase OS=Methanospirillum hungatei (strain
JF-1 / DSM 864) GN=cobQ PE=3 SV=1
Length = 478
Score = 30.8 bits (68), Expect = 2.2, Method: Composition-based stats.
Identities = 22/97 (22%), Positives = 41/97 (42%), Gaps = 5/97 (5%)
Query: 4 FVEINAVSFFIVCRSARVSFNLGFLKSLKMSGRKETVLDLAKFVDKG----VQVKLTGGR 59
F + + + R + L ++ + G K T+ DL + + G ++ T G
Sbjct: 260 FTDYEVLERYASVRYVKPGTPLSGFDAIILPGTKNTIEDLEEVIASGTGEEIKKARTQGV 319
Query: 60 QVTGTLKGYDQLLNLVLDEAVEFLRGNLYNGIFVIVC 96
+ G GY L +LD +E G ++G+ +I C
Sbjct: 320 PIIGICGGYQMLCEEILDSGIESKEGT-FHGLGLIPC 355
>sp|P38203|LSM2_YEAST U6 snRNA-associated Sm-like protein LSm2 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=LSM2 PE=1
SV=1
Length = 95
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 47 VDKGVQVKLTGGRQVTGTLKGYDQLLNLVLD 77
VD+ V V+L ++ GTL+ DQ LNL LD
Sbjct: 11 VDQEVVVELKNDIEIKGTLQSVDQFLNLKLD 41
>sp|Q54W83|LSM1_DICDI Probable U6 snRNA-associated Sm-like protein LSm1
OS=Dictyostelium discoideum GN=lsm1 PE=3 SV=1
Length = 129
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 23/39 (58%)
Query: 43 LAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVE 81
L VDK + V L GR+ G ++ +DQ N+VL + +E
Sbjct: 5 LGDEVDKKLIVVLRDGRKFIGIMRTFDQFANIVLQDTIE 43
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.331 0.146 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,047,524
Number of Sequences: 539616
Number of extensions: 1088461
Number of successful extensions: 4058
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 3989
Number of HSP's gapped (non-prelim): 70
length of query: 102
length of database: 191,569,459
effective HSP length: 71
effective length of query: 31
effective length of database: 153,256,723
effective search space: 4750958413
effective search space used: 4750958413
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 55 (25.8 bits)