Query 034180
Match_columns 102
No_of_seqs 142 out of 1056
Neff 4.8
Searched_HMMs 29240
Date Mon Mar 25 18:12:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034180.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034180hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3s6n_G Small nuclear ribonucle 99.7 1.9E-18 6.4E-23 111.6 5.1 58 39-96 5-62 (76)
2 1h64_1 SnRNP SM-like protein; 99.7 1.3E-17 4.6E-22 106.8 8.2 58 39-96 5-62 (75)
3 1th7_A SnRNP-2, small nuclear 99.7 1.1E-17 3.6E-22 108.9 7.6 57 40-96 11-67 (81)
4 4emk_B U6 snRNA-associated SM- 99.7 1.6E-17 5.4E-22 106.9 7.7 57 40-96 6-62 (75)
5 4emk_C U6 snRNA-associated SM- 99.7 1.3E-17 4.6E-22 115.7 7.5 64 33-96 18-88 (113)
6 1mgq_A SM-like protein; LSM, R 99.7 3.9E-17 1.3E-21 106.9 9.2 59 38-96 15-73 (83)
7 3s6n_F Small nuclear ribonucle 99.7 1.3E-17 4.4E-22 110.4 6.7 64 33-96 1-64 (86)
8 1i4k_A Putative snRNP SM-like 99.7 2.9E-17 9.8E-22 105.5 8.0 57 40-96 6-62 (77)
9 4emk_A U6 snRNA-associated SM- 99.7 2.9E-17 9.9E-22 111.0 7.9 57 40-96 22-79 (94)
10 1ljo_A Archaeal SM-like protei 99.7 5E-17 1.7E-21 104.7 8.1 58 39-96 6-64 (77)
11 1d3b_B Protein (small nuclear 99.7 6E-17 2E-21 107.0 7.7 57 40-96 6-72 (91)
12 1i8f_A Putative snRNP SM-like 99.7 8.2E-17 2.8E-21 104.8 7.5 56 40-96 13-68 (81)
13 3bw1_A SMX4 protein, U6 snRNA- 99.7 8.7E-17 3E-21 108.1 7.4 58 39-96 11-75 (96)
14 1n9r_A SMF, small nuclear ribo 99.7 5.7E-17 2E-21 109.0 6.3 57 40-96 23-80 (93)
15 3s6n_E Small nuclear ribonucle 99.6 1.4E-16 4.8E-21 107.1 5.4 65 32-96 9-79 (92)
16 1d3b_A Protein (small nuclear 99.6 6.3E-16 2.2E-20 99.7 7.9 56 40-95 7-62 (75)
17 1b34_B Protein (small nuclear 99.6 3.2E-16 1.1E-20 108.8 6.6 67 16-84 7-75 (118)
18 4emg_A Probable U6 snRNA-assoc 99.6 1.1E-15 3.6E-20 102.5 8.8 59 38-96 8-80 (93)
19 4emh_A Probable U6 snRNA-assoc 99.6 2.1E-15 7.3E-20 103.6 7.5 56 41-96 19-75 (105)
20 3pgw_B SM B; protein-RNA compl 99.6 1.6E-15 5.3E-20 116.8 7.4 57 40-96 6-72 (231)
21 1b34_A Protein (small nuclear 99.6 2.5E-15 8.4E-20 104.6 7.0 57 40-96 4-60 (119)
22 2fwk_A U6 snRNA-associated SM- 99.6 2.1E-15 7.3E-20 105.1 4.5 54 43-96 33-101 (121)
23 2y9a_D Small nuclear ribonucle 99.5 8.1E-14 2.8E-18 98.4 7.4 57 39-95 6-62 (126)
24 1m5q_A SMAP3, small nuclear ri 99.4 1.2E-13 4.2E-18 97.9 5.7 51 41-95 3-53 (130)
25 1y96_A Gemin6, SIP2, GEM-assoc 98.7 2.4E-08 8.2E-13 66.7 5.9 42 38-79 7-49 (86)
26 3sb2_A Protein HFQ; SM-like, R 97.0 0.00091 3.1E-08 43.8 4.2 34 43-77 13-48 (79)
27 2ylb_A Protein HFQ; RNA-bindin 96.9 0.0019 6.3E-08 41.7 5.0 35 43-78 14-50 (74)
28 3ahu_A Protein HFQ; SM-like mo 96.6 0.0035 1.2E-07 40.9 4.9 43 33-75 4-50 (78)
29 2qtx_A Uncharacterized protein 96.5 0.0063 2.2E-07 39.1 5.5 29 47-75 24-52 (71)
30 1u1s_A HFQ protein; SM-like ba 96.5 0.0042 1.4E-07 41.0 4.7 34 43-77 12-47 (82)
31 1kq1_A HFQ, HOST factor for Q 96.3 0.0073 2.5E-07 39.2 4.9 33 43-75 12-46 (77)
32 2y90_A Protein HFQ; RNA-bindin 95.9 0.011 3.8E-07 40.5 4.7 34 43-77 14-49 (104)
33 1ycy_A Conserved hypothetical 94.7 0.032 1.1E-06 35.6 3.5 42 43-85 11-52 (71)
34 4a53_A EDC3; RNA binding prote 93.7 0.1 3.5E-06 36.7 4.9 37 42-79 6-44 (125)
35 3hfo_A SSR3341 protein; HFQ, S 91.4 0.23 7.8E-06 31.6 3.8 38 39-77 10-49 (70)
36 3hfn_A ASL2047 protein; HFQ, S 91.4 0.23 8E-06 31.8 3.8 40 39-79 12-53 (72)
37 1ib8_A Conserved protein SP14. 91.4 0.25 8.4E-06 35.3 4.4 32 40-71 96-131 (164)
38 2vc8_A Enhancer of mRNA-decapp 88.3 0.85 2.9E-05 30.0 4.7 36 45-80 6-43 (84)
39 2vxe_A CG10686-PA; EDC3, CAR-1 87.9 1.2 4E-05 29.5 5.3 40 44-83 9-49 (88)
40 3rux_A BIRA bifunctional prote 87.4 0.75 2.6E-05 34.8 4.6 33 47-79 223-255 (270)
41 2fb7_A SM-like protein, LSM-14 86.5 1 3.6E-05 30.2 4.4 41 42-82 13-54 (95)
42 1y96_B Gemin7, SIP3, GEM-assoc 78.3 4.1 0.00014 26.8 4.7 39 40-78 21-60 (85)
43 2xk0_A Polycomb protein PCL; t 76.5 6.9 0.00024 24.8 5.3 24 47-70 18-41 (69)
44 2ej9_A Putative biotin ligase; 70.8 6.1 0.00021 29.0 4.7 32 46-78 190-221 (237)
45 1bia_A BIRA bifunctional prote 66.1 8.2 0.00028 29.3 4.7 31 47-78 272-302 (321)
46 2dxu_A Biotin--[acetyl-COA-car 62.9 5.7 0.0002 29.2 3.1 30 47-78 188-217 (235)
47 3rkx_A Biotin-[acetyl-COA-carb 60.5 9.9 0.00034 29.2 4.2 32 46-78 277-308 (323)
48 2eay_A Biotin [acetyl-COA-carb 58.9 4.9 0.00017 29.5 2.1 30 47-78 187-216 (233)
49 3bfm_A Biotin protein ligase-l 58.3 14 0.00047 26.9 4.5 27 47-78 193-219 (235)
50 2rm4_A CG6311-PB, DM EDC3; enh 49.5 41 0.0014 22.6 5.3 37 44-81 8-45 (103)
51 4hcz_A PHD finger protein 1; p 47.1 25 0.00087 21.4 3.7 25 47-71 6-30 (58)
52 4a8c_A Periplasmic PH-dependen 43.5 31 0.0011 27.2 4.6 31 49-79 88-118 (436)
53 1ky9_A Protease DO, DEGP, HTRA 43.2 31 0.0011 27.4 4.6 31 49-79 111-141 (448)
54 2e12_A SM-like motif, hypothet 42.7 25 0.00085 23.5 3.4 17 49-65 29-45 (101)
55 3stj_A Protease DEGQ; serine p 34.9 45 0.0015 25.5 4.2 31 49-79 88-118 (345)
56 2j3t_D Trafficking protein par 34.9 17 0.00057 27.3 1.7 61 10-70 4-68 (219)
57 3sti_A Protease DEGQ; serine p 34.3 45 0.0015 24.3 4.0 31 49-79 88-118 (245)
58 2qqr_A JMJC domain-containing 32.5 47 0.0016 22.6 3.6 23 47-69 8-30 (118)
59 3pv2_A DEGQ; trypsin fold, PDZ 31.5 41 0.0014 26.7 3.6 31 49-79 102-132 (451)
60 3fb9_A Uncharacterized protein 30.6 34 0.0012 22.4 2.5 27 42-68 19-49 (90)
61 3lgi_A Protease DEGS; stress-s 29.3 74 0.0025 22.5 4.4 30 49-78 77-106 (237)
62 1sg5_A ORF, hypothetical prote 29.0 25 0.00085 22.6 1.6 25 41-65 18-42 (86)
63 1y8t_A Hypothetical protein RV 28.6 64 0.0022 23.9 4.1 32 48-79 63-94 (324)
64 1lcy_A HTRA2 serine protease; 28.2 73 0.0025 23.8 4.4 31 49-79 71-101 (325)
65 3tjo_A Serine protease HTRA1; 28.1 82 0.0028 22.3 4.5 32 48-79 86-117 (231)
66 1te0_A Protease DEGS; two doma 27.9 75 0.0026 23.6 4.4 31 49-79 66-96 (318)
67 2eqj_A Metal-response element- 25.6 92 0.0032 19.3 3.7 25 47-71 16-40 (66)
68 3tee_A Flagella basal BODY P-r 24.7 49 0.0017 24.2 2.7 22 46-67 169-190 (219)
69 3qo6_A Protease DO-like 1, chl 24.1 98 0.0033 23.3 4.4 31 49-79 77-107 (348)
70 3num_A Serine protease HTRA1; 21.2 1.4E+02 0.0049 22.1 4.8 30 49-78 70-99 (332)
71 3mkv_A Putative amidohydrolase 20.8 24 0.00083 24.1 0.3 23 49-71 399-421 (426)
72 4g9s_B Inhibitor of G-type lys 20.5 45 0.0015 21.5 1.6 22 48-69 2-26 (111)
73 4fln_A Protease DO-like 2, chl 20.2 89 0.0031 25.9 3.7 29 49-77 97-126 (539)
No 1
>3s6n_G Small nuclear ribonucleoprotein G; SMN complex, SMN-gemin2 complex, U-rich snRNA, SM fold, SM C SNRNPS, snRNP biogenesis, PRE-mRNA splicing; 2.50A {Homo sapiens} PDB: 2y9b_G 2y9c_G 2y9d_G 3cw1_G 3pgw_G* 2y9a_G
Probab=99.74 E-value=1.9e-18 Score=111.62 Aligned_cols=58 Identities=43% Similarity=0.722 Sum_probs=42.5
Q ss_pred CcchHHhhcCCeEEEEEcCCeEEEEEEEEecCccceEEcceEEEEeCceeecEEEEEE
Q 034180 39 TVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRGNLYNGIFVIVC 96 (102)
Q Consensus 39 ~~~~L~~~i~K~V~V~Lk~Gr~i~G~L~gfD~~mNLVL~da~E~~~~~~~~~iG~iv~ 96 (102)
..+.|++++|++|+|+|+||++|+|+|.|||+|||++|+||+|+.++++.+.+|.++.
T Consensus 5 ~~~~L~~~~~k~V~V~Lk~gr~~~G~L~~~D~~mNlvL~~~~e~~~~~~~~~lg~v~i 62 (76)
T 3s6n_G 5 HPPELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNIGMVVI 62 (76)
T ss_dssp ---------CCEEEEEETTTEEEEEEEEEECTTCCEEEEEEEECCCC----CBSSEEE
T ss_pred chHHHHHhCCCeEEEEECCCcEEEEEEEEECCcceEEEeceEEEccCCcEeEcCEEEE
Confidence 5789999999999999999999999999999999999999999998888888887754
No 2
>1h64_1 SnRNP SM-like protein; SM fold, spliceosome, snRNP core; 1.9A {Pyrococcus abyssi} SCOP: b.38.1.1 PDB: 1m8v_A*
Probab=99.73 E-value=1.3e-17 Score=106.76 Aligned_cols=58 Identities=33% Similarity=0.375 Sum_probs=53.4
Q ss_pred CcchHHhhcCCeEEEEEcCCeEEEEEEEEecCccceEEcceEEEEeCceeecEEEEEE
Q 034180 39 TVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRGNLYNGIFVIVC 96 (102)
Q Consensus 39 ~~~~L~~~i~K~V~V~Lk~Gr~i~G~L~gfD~~mNLVL~da~E~~~~~~~~~iG~iv~ 96 (102)
+...|.+++|++|+|+|+||++++|+|.|||+|||++|+||+|+..++..+.+|.++-
T Consensus 5 P~~~L~~~~~~~V~V~l~~g~~~~G~L~~~D~~mNlvL~d~~e~~~~~~~~~lg~v~i 62 (75)
T 1h64_1 5 PLDVIHRSLDKDVLVILKKGFEFRGRLIGYDIHLNVVLADAEMIQDGEVVKRYGKIVI 62 (75)
T ss_dssp HHHHHHTTTTSEEEEEETTSEEEEEEEEEECTTCCEEEEEEEEEETTEEEEEEEEEEE
T ss_pred HHHHHHHHCCCEEEEEECCCCEEEEEEEEEeCCCCeEEeeEEEEeeCCceeECCEEEE
Confidence 3566999999999999999999999999999999999999999998888888998753
No 3
>1th7_A SnRNP-2, small nuclear riboprotein protein; archaea, SM protein, SM fold, SS-SM1, RNA binding protein; 1.68A {Sulfolobus solfataricus} SCOP: b.38.1.1
Probab=99.73 E-value=1.1e-17 Score=108.93 Aligned_cols=57 Identities=35% Similarity=0.427 Sum_probs=52.7
Q ss_pred cchHHhhcCCeEEEEEcCCeEEEEEEEEecCccceEEcceEEEEeCceeecEEEEEE
Q 034180 40 VLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRGNLYNGIFVIVC 96 (102)
Q Consensus 40 ~~~L~~~i~K~V~V~Lk~Gr~i~G~L~gfD~~mNLVL~da~E~~~~~~~~~iG~iv~ 96 (102)
...|.+++|++|+|+|+||++++|+|.|||+|||++|+||+|+..++..+.+|.++.
T Consensus 11 ~~~L~~~~~~~V~V~l~~g~~~~G~L~~~D~~mNlvL~d~~e~~~~~~~~~lg~v~i 67 (81)
T 1th7_A 11 HKVLAESLNNLVLVKLKGNKEVRGMLRSYDQHMNLVLSDSEEIQSDGSGKKLGTIVI 67 (81)
T ss_dssp HHHHHHHTTSEEEEEETTTEEEEEEEEEECTTCCEEEEEEEEECSSSCEEEEEEEEE
T ss_pred HHHHHHhCCCeEEEEEcCCcEEEEEEEEEcCCCCEEEccEEEEecCCceeECCEEEE
Confidence 456899999999999999999999999999999999999999998888888998764
No 4
>4emk_B U6 snRNA-associated SM-like protein LSM6; SM fold, mRNA decay and PRE-mRNA splicing, LSM proteins, RNA protein; 2.30A {Schizosaccharomyces pombe} PDB: 3swn_B
Probab=99.72 E-value=1.6e-17 Score=106.88 Aligned_cols=57 Identities=26% Similarity=0.313 Sum_probs=52.6
Q ss_pred cchHHhhcCCeEEEEEcCCeEEEEEEEEecCccceEEcceEEEEeCceeecEEEEEE
Q 034180 40 VLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRGNLYNGIFVIVC 96 (102)
Q Consensus 40 ~~~L~~~i~K~V~V~Lk~Gr~i~G~L~gfD~~mNLVL~da~E~~~~~~~~~iG~iv~ 96 (102)
...|++++||+|.|+|+||++|+|+|.|||+|||++|+||+|+.+++..+.+|.++-
T Consensus 6 ~~~L~~~~~k~V~V~Lk~g~~~~G~L~~~D~~mNlvL~d~~e~~~~~~~~~lg~v~i 62 (75)
T 4emk_B 6 NEFLNKVIGKKVLIRLSSGVDYKGILSCLDGYMNLALERTEEYVNGKKTNVYGDAFI 62 (75)
T ss_dssp HHHHHHTTTSEEEEECTTSCEEEEEEEEECTTCEEEEEEEEEEETTEEEEEEEEEEE
T ss_pred HHHHHHhCCCeEEEEEcCCcEEEEEEEEEcCcceEEEccEEEEecCCcccEecEEEE
Confidence 456899999999999999999999999999999999999999998888888998754
No 5
>4emk_C U6 snRNA-associated SM-like protein LSM7; SM fold, mRNA decay and PRE-mRNA splicing, LSM proteins, RNA protein; 2.30A {Schizosaccharomyces pombe} PDB: 3swn_C
Probab=99.72 E-value=1.3e-17 Score=115.65 Aligned_cols=64 Identities=47% Similarity=0.770 Sum_probs=44.4
Q ss_pred cCCCcCCcchHHhhcCCeEEEEEcCCeEEEEEEEEecCccceEEcceEEEEeC-------ceeecEEEEEE
Q 034180 33 MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRG-------NLYNGIFVIVC 96 (102)
Q Consensus 33 ms~~~~~~~~L~~~i~K~V~V~Lk~Gr~i~G~L~gfD~~mNLVL~da~E~~~~-------~~~~~iG~iv~ 96 (102)
..++++++++|.+++|++|+|+|+|||+|.|+|.|||+||||||+||+|++.+ ...+.+|+++.
T Consensus 18 ~~~kke~i~~L~~~l~k~V~V~L~dGr~~~G~L~~fD~~mNLVL~d~~E~~~~~~~~~~~~~~r~lG~v~I 88 (113)
T 4emk_C 18 ERPRKESILDLSRYQDQRIQATFTGGRQITGILKGFDQLMNLVLDDVEEQLRNPEDGKLTGAIRKLGLVVV 88 (113)
T ss_dssp --------------CCSEEEEEETTSCEEEEEEEEECTTCCEEEEEEEEEC---------CCEEEEEEEEE
T ss_pred cCCccchHHHHHHHcCCcEEEEEeCCeEEEEEEEEEcCcccEEEeeEEEEEcCCCCcccccceeEccEEEE
Confidence 33567788999999999999999999999999999999999999999999864 35678888764
No 6
>1mgq_A SM-like protein; LSM, RNA-binding, archea, RNA binding protein; 1.70A {Methanothermobacterthermautotrophicus} SCOP: b.38.1.1 PDB: 1i81_A 1loj_A* 1jbm_A 1jri_A
Probab=99.72 E-value=3.9e-17 Score=106.92 Aligned_cols=59 Identities=29% Similarity=0.467 Sum_probs=53.8
Q ss_pred CCcchHHhhcCCeEEEEEcCCeEEEEEEEEecCccceEEcceEEEEeCceeecEEEEEE
Q 034180 38 ETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRGNLYNGIFVIVC 96 (102)
Q Consensus 38 ~~~~~L~~~i~K~V~V~Lk~Gr~i~G~L~gfD~~mNLVL~da~E~~~~~~~~~iG~iv~ 96 (102)
.+...|.+++|++|+|+|+||++++|+|.|||+|||++|+||+|+..++..+.+|.++-
T Consensus 15 ~P~~~L~~~~~~~V~V~Lk~g~~~~G~L~~~D~~mNlvL~d~~e~~~~~~~~~lg~v~I 73 (83)
T 1mgq_A 15 RPLDALGNSLNSPVIIKLKGDREFRGVLKSFDLHMNLVLNDAEELEDGEVTRRLGTVLI 73 (83)
T ss_dssp CTTHHHHHTTTSEEEEEETTTEEEEEEEEEECTTCCEEEEEEEEEETTEEEEEEEEEEE
T ss_pred ChHHHHHHhCCCEEEEEEcCCcEEEEEEEEECCCceeEEccEEEEecCCcccCCCEEEE
Confidence 34556999999999999999999999999999999999999999998888888998764
No 7
>3s6n_F Small nuclear ribonucleoprotein F; SMN complex, SMN-gemin2 complex, U-rich snRNA, SM fold, SM C SNRNPS, snRNP biogenesis, PRE-mRNA splicing; 2.50A {Homo sapiens} PDB: 2y9b_F 2y9c_F 2y9d_F 3cw1_F 3pgw_F* 2y9a_F
Probab=99.71 E-value=1.3e-17 Score=110.38 Aligned_cols=64 Identities=27% Similarity=0.272 Sum_probs=53.6
Q ss_pred cCCCcCCcchHHhhcCCeEEEEEcCCeEEEEEEEEecCccceEEcceEEEEeCceeecEEEEEE
Q 034180 33 MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRGNLYNGIFVIVC 96 (102)
Q Consensus 33 ms~~~~~~~~L~~~i~K~V~V~Lk~Gr~i~G~L~gfD~~mNLVL~da~E~~~~~~~~~iG~iv~ 96 (102)
||....+...|++++|++|.|+|+||++|+|+|.|||+|||++|+||+|+.+++..+.+|.++-
T Consensus 1 ms~~~~P~~~L~~~~~k~V~V~Lk~g~~~~G~L~~~D~~mNlvL~d~~e~~~g~~~~~lg~v~I 64 (86)
T 3s6n_F 1 MSLPLNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGEVLI 64 (86)
T ss_dssp --CCCCHHHHHHHHTTSEEEEEETTSCEEEEEEEEECTTCCEEEEEEEEEETTEEEEEESSEEE
T ss_pred CCcCcCcHHHHHHhCCCeEEEEEcCCeEEEEEEEEEcCceEEEEeeEEEEcCCceeeEccEEEE
Confidence 4544444456899999999999999999999999999999999999999988777778887653
No 8
>1i4k_A Putative snRNP SM-like protein; core snRNP domain, RNA binding protein; HET: CIT; 2.50A {Archaeoglobus fulgidus} SCOP: b.38.1.1 PDB: 1i5l_A*
Probab=99.71 E-value=2.9e-17 Score=105.52 Aligned_cols=57 Identities=37% Similarity=0.525 Sum_probs=52.9
Q ss_pred cchHHhhcCCeEEEEEcCCeEEEEEEEEecCccceEEcceEEEEeCceeecEEEEEE
Q 034180 40 VLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRGNLYNGIFVIVC 96 (102)
Q Consensus 40 ~~~L~~~i~K~V~V~Lk~Gr~i~G~L~gfD~~mNLVL~da~E~~~~~~~~~iG~iv~ 96 (102)
...|.+++|++|+|+|+||++++|+|.|||+|||++|+||+|+..++..+.+|.++.
T Consensus 6 ~~~L~~~~~~~V~V~L~~g~~~~G~L~~~D~~mNlvL~d~~e~~~~~~~~~lg~v~i 62 (77)
T 1i4k_A 6 LDVLNRSLKSPVIVRLKGGREFRGTLDGYDIHMNLVLLDAEEIQNGEVVRKVGSVVI 62 (77)
T ss_dssp HHHHHTTTTSEEEEEETTSCEEEEEEEEECTTCCEEEEEEEEEETTEEEEEEEEEEE
T ss_pred HHHHHHhCCCEEEEEEcCCCEEEEEEEEEcCCCCeEEeeEEEEecCCcEeECCEEEE
Confidence 456899999999999999999999999999999999999999998888888998754
No 9
>4emk_A U6 snRNA-associated SM-like protein LSM5; SM fold, mRNA decay and PRE-mRNA splicing, LSM proteins, RNA protein; 2.30A {Schizosaccharomyces pombe} PDB: 3swn_A
Probab=99.71 E-value=2.9e-17 Score=110.99 Aligned_cols=57 Identities=21% Similarity=0.346 Sum_probs=51.8
Q ss_pred cchHHhhcCCeEEEEEcCCeEEEEEEEEecCccceEEcceEEEE-eCceeecEEEEEE
Q 034180 40 VLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFL-RGNLYNGIFVIVC 96 (102)
Q Consensus 40 ~~~L~~~i~K~V~V~Lk~Gr~i~G~L~gfD~~mNLVL~da~E~~-~~~~~~~iG~iv~ 96 (102)
..-|.++++++|+|+|+||++|+|+|.|||+|||++|+||+|+. +++..+.+|.++.
T Consensus 22 l~lL~~~l~k~V~V~Lk~gr~~~G~L~gfD~~mNlvL~d~~E~~~~~~~~~~lg~v~I 79 (94)
T 4emk_A 22 LELIDKCIGSNLWVIMKSEREFAGTLVGFDDYVNIVLKDVTEYDTVTGVTEKHSEMLL 79 (94)
T ss_dssp HHHHHHTTTSEEEEEESSSEEEEEEEEEECTTCCEEEEEEEEEETTTCCEEEEEEEEE
T ss_pred HHHHHHHcCCeEEEEECCCcEEEEEEEEEcccCCeEeeeEEEEecCCCcEeEcCEEEE
Confidence 34478999999999999999999999999999999999999999 6777888998765
No 10
>1ljo_A Archaeal SM-like protein AF-SM2; snRNP, core snRNP domain, RNA binding protein, unknown F; 1.95A {Archaeoglobus fulgidus} SCOP: b.38.1.1
Probab=99.70 E-value=5e-17 Score=104.70 Aligned_cols=58 Identities=28% Similarity=0.355 Sum_probs=53.5
Q ss_pred CcchHHhhcCCeEEEEEcCC-eEEEEEEEEecCccceEEcceEEEEeCceeecEEEEEE
Q 034180 39 TVLDLAKFVDKGVQVKLTGG-RQVTGTLKGYDQLLNLVLDEAVEFLRGNLYNGIFVIVC 96 (102)
Q Consensus 39 ~~~~L~~~i~K~V~V~Lk~G-r~i~G~L~gfD~~mNLVL~da~E~~~~~~~~~iG~iv~ 96 (102)
+...|.++++++|+|+|+|| ++++|+|.|||+|||++|+||+|+.+++..+.+|.++.
T Consensus 6 P~~~L~~~~~~~v~V~lk~g~~~~~G~L~~~D~~mNlvL~d~~e~~~~~~~~~lg~v~i 64 (77)
T 1ljo_A 6 PNQMVKSMVGKIIRVEMKGEENQLVGKLEGVDDYMNLYLTNAMECKGEEKVRSLGEIVL 64 (77)
T ss_dssp HHHHHHHTTTSEEEEEETTCSSEEEEEEEEECTTCCEEEEEEEEEETTEEEEEEEEEEE
T ss_pred hHHHHHHHCCCEEEEEEeCCCEEEEEEEEEECCcceEEEeeEEEEecCCcEeECCeEEE
Confidence 35679999999999999999 99999999999999999999999998888889998764
No 11
>1d3b_B Protein (small nuclear ribonucleoprotein associat B); snRNP, splicing, core snRNP domain, systemic lupus eryth SLE, RNA binding protein; HET: CIT; 2.00A {Homo sapiens} SCOP: b.38.1.1 PDB: 2y9a_A 2y9b_A 2y9c_A 2y9d_A
Probab=99.69 E-value=6e-17 Score=107.04 Aligned_cols=57 Identities=23% Similarity=0.362 Sum_probs=49.6
Q ss_pred cchHHhhcCCeEEEEEcCCeEEEEEEEEecCccceEEcceEEEE----------eCceeecEEEEEE
Q 034180 40 VLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFL----------RGNLYNGIFVIVC 96 (102)
Q Consensus 40 ~~~L~~~i~K~V~V~Lk~Gr~i~G~L~gfD~~mNLVL~da~E~~----------~~~~~~~iG~iv~ 96 (102)
.+.|.+++|++|+|+|+|||+|+|+|.|||+|||++|+||+|+. .+...+.+|.++.
T Consensus 6 ~~~L~~~~~k~V~V~l~~gr~~~G~L~~~D~~mNlvL~d~~E~~~~~~~~~~~~~~~~~~~lg~v~i 72 (91)
T 1d3b_B 6 SSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLL 72 (91)
T ss_dssp -CCCGGGTTSEEEEEETTCCEEEEEEEECCTTCCEEEEEEEEEEEECCSSTTSCCEEEEEEEEEEEE
T ss_pred hHHHHHHcCCcEEEEECCCeEEEEEEEEECCCCeEEecCEEEEeeccccccccccCccEeECCEEEE
Confidence 45799999999999999999999999999999999999999975 2345678888764
No 12
>1i8f_A Putative snRNP SM-like protein; beta barrel-like SMAP monomers form 35-stranded beta-sheet I heptamer, structural genomics; 1.75A {Pyrobaculum aerophilum} SCOP: b.38.1.1 PDB: 1lnx_A*
Probab=99.68 E-value=8.2e-17 Score=104.84 Aligned_cols=56 Identities=29% Similarity=0.357 Sum_probs=51.3
Q ss_pred cchHHhhcCCeEEEEEcCCeEEEEEEEEecCccceEEcceEEEEeCceeecEEEEEE
Q 034180 40 VLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRGNLYNGIFVIVC 96 (102)
Q Consensus 40 ~~~L~~~i~K~V~V~Lk~Gr~i~G~L~gfD~~mNLVL~da~E~~~~~~~~~iG~iv~ 96 (102)
...|.++++++|+|+|+||++|+|+|.|||+|||++|+||+|+ +++..+.+|.++.
T Consensus 13 ~~~L~~~~~~~V~V~l~~g~~~~G~L~~~D~~mNlvL~d~~e~-~~~~~~~lg~v~i 68 (81)
T 1i8f_A 13 GATLQDSIGKQVLVKLRDSHEIRGILRSFDQHVNLLLEDAEEI-IDGNVYKRGTMVV 68 (81)
T ss_dssp HHHHHTTTTSEEEEEEGGGEEEEEEEEEECTTCCEEEEEEEEE-ETTEEEEEEEEEE
T ss_pred HHHHHHHCCCeEEEEEcCCcEEEEEEEEEcCCCeeEEccEEEE-cCCcccCCCEEEE
Confidence 4568999999999999999999999999999999999999999 7778888998764
No 13
>3bw1_A SMX4 protein, U6 snRNA-associated SM-like protein LSM3; RNA-binding protein, SM protein, ring, HOMO octamer, mRNA processing; 2.50A {Saccharomyces cerevisiae}
Probab=99.68 E-value=8.7e-17 Score=108.14 Aligned_cols=58 Identities=29% Similarity=0.373 Sum_probs=51.2
Q ss_pred CcchHHhhcCCeEEEEEcCCeEEEEEEEEecCccceEEcceEEEEeC-------ceeecEEEEEE
Q 034180 39 TVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRG-------NLYNGIFVIVC 96 (102)
Q Consensus 39 ~~~~L~~~i~K~V~V~Lk~Gr~i~G~L~gfD~~mNLVL~da~E~~~~-------~~~~~iG~iv~ 96 (102)
+...|.+++||+|+|+|+|||+++|+|.|||+|||++|+||+|++.+ +..+.+|.++.
T Consensus 11 p~~~L~~~i~k~V~V~Lk~gr~~~G~L~~fD~~mNlVL~d~~E~~~~~~~~~~~~~~r~lG~v~I 75 (96)
T 3bw1_A 11 PLDLLKLNLDERVYIKLRGARTLVGTLQAFDSHCNIVLSDAVETIYQLNNEELSESERRCEMVFI 75 (96)
T ss_dssp HHHHHGGGTTSEEEEEEGGGCEEEEEEEEECTTCCEEEEEEEEEEECCSTTCCCEEEEEEEEEEE
T ss_pred HHHHHHHHCCCeEEEEECCCcEEEEEEEEECCCCcEEEcCEEEEeccccccccCcceeEcCEEEE
Confidence 35579999999999999999999999999999999999999999853 45677888764
No 14
>1n9r_A SMF, small nuclear ribonucleoprotein F, snRNP-F, SM protein F; heptamer, translation; 2.80A {Saccharomyces cerevisiae} SCOP: b.38.1.1 PDB: 1n9s_A
Probab=99.68 E-value=5.7e-17 Score=108.95 Aligned_cols=57 Identities=33% Similarity=0.314 Sum_probs=50.3
Q ss_pred cchHHhhcCCeEEEEEcCC-eEEEEEEEEecCccceEEcceEEEEeCceeecEEEEEE
Q 034180 40 VLDLAKFVDKGVQVKLTGG-RQVTGTLKGYDQLLNLVLDEAVEFLRGNLYNGIFVIVC 96 (102)
Q Consensus 40 ~~~L~~~i~K~V~V~Lk~G-r~i~G~L~gfD~~mNLVL~da~E~~~~~~~~~iG~iv~ 96 (102)
...|.+++|++|.|+|+|| ++|+|+|.|||+|||++|+||+|+.+++..+.+|.++-
T Consensus 23 ~~~L~~~i~k~V~V~Lk~g~~~~~G~L~~~D~~MNlvL~d~~E~~~~~~~~~lg~v~I 80 (93)
T 1n9r_A 23 KPFLKGLVNHRVGVKLKFNSTEYRGTLVSTDNYFNLQLNEAEEFVAGVSHGTLGEIFI 80 (93)
T ss_dssp ---CGGGTTSEEEEEESSTTEEEEEEEEECCTTTCEEEEEEEEEETTEEEEECCSEEE
T ss_pred HHHHHHhCCCEEEEEEcCCCEEEEEEEEEEccccEEEEeeEEEEcCCCeEeEcCEEEE
Confidence 4568899999999999999 99999999999999999999999988888888887653
No 15
>3s6n_E Small nuclear ribonucleoprotein E; SMN complex, SMN-gemin2 complex, U-rich snRNA, SM fold, SM C SNRNPS, snRNP biogenesis, PRE-mRNA splicing; 2.50A {Homo sapiens} PDB: 2y9b_E 2y9c_E 2y9d_E 3cw1_E 3pgw_E* 2y9a_E
Probab=99.65 E-value=1.4e-16 Score=107.07 Aligned_cols=65 Identities=18% Similarity=0.365 Sum_probs=52.4
Q ss_pred ccCCCcCCcch-HHhhcCCeEEEEE----cCCeEEEEEEEEecCccceEEcceEEEE-eCceeecEEEEEE
Q 034180 32 KMSGRKETVLD-LAKFVDKGVQVKL----TGGRQVTGTLKGYDQLLNLVLDEAVEFL-RGNLYNGIFVIVC 96 (102)
Q Consensus 32 ~ms~~~~~~~~-L~~~i~K~V~V~L----k~Gr~i~G~L~gfD~~mNLVL~da~E~~-~~~~~~~iG~iv~ 96 (102)
+|++.+..|.+ |.++++++++|++ +||++|+|+|.|||+|||++|+||+|+. +++..+.+|.++.
T Consensus 9 ~~~~~m~~Pl~lL~~~l~~~v~V~l~~~~~~gr~~~G~L~gfD~~mNlvL~d~~E~~~~~~~~~~lg~v~i 79 (92)
T 3s6n_E 9 KVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKTKSRKQLGRIML 79 (92)
T ss_dssp -----CCCHHHHHHHHHHHTCEEEEEESSSCSSEEEEEEEEECTTCCEEEEEEEEECSSSCCEEEEEEEEE
T ss_pred ccceeccCCHHHHHHHhCCCEEEEEEEEecCCEEEEEEEEEEcCcCcEEEeeeEEEecCCCceeEcCeEEE
Confidence 44444555655 7799999999999 9999999999999999999999999998 4566788898764
No 16
>1d3b_A Protein (small nuclear ribonucleoprotein SM D3); snRNP, splicing, core snRNP domain, systemic lupus eryth SLE, RNA binding protein; HET: CIT; 2.00A {Homo sapiens} SCOP: b.38.1.1
Probab=99.64 E-value=6.3e-16 Score=99.73 Aligned_cols=56 Identities=13% Similarity=0.065 Sum_probs=50.9
Q ss_pred cchHHhhcCCeEEEEEcCCeEEEEEEEEecCccceEEcceEEEEeCceeecEEEEE
Q 034180 40 VLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRGNLYNGIFVIV 95 (102)
Q Consensus 40 ~~~L~~~i~K~V~V~Lk~Gr~i~G~L~gfD~~mNLVL~da~E~~~~~~~~~iG~iv 95 (102)
...|++++|++|.|+|++|++|+|+|.|||+|||++|+||+|+.++++.+.+|.++
T Consensus 7 ~~~L~~~~g~~V~VeLk~g~~~~G~L~~~D~~MNl~L~~~~e~~~~~~~~~lg~v~ 62 (75)
T 1d3b_A 7 IKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDGRVAQLEQVY 62 (75)
T ss_dssp HHHHHHTTTSEEEEEETTSCEEEEEEEEECTTCCEEEEEEEEECTTSCEEEEEEEE
T ss_pred HHHHHHhCCCEEEEEECCCcEEEEEEEEEccceeEEEEeEEEECCCCcEEEcCeEE
Confidence 34588999999999999999999999999999999999999998777788888874
No 17
>1b34_B Protein (small nuclear ribonucleoprotein SM D2); snRNP, splicing, spliceosome, core snRNP domain, systemi erythematosus, SLE, RNA binding protein; 2.50A {Homo sapiens} SCOP: b.38.1.1 PDB: 2y9a_C 2y9b_C 2y9c_C 2y9d_C 3cw1_C 3pgw_Y* 3s6n_B
Probab=99.64 E-value=3.2e-16 Score=108.77 Aligned_cols=67 Identities=18% Similarity=0.245 Sum_probs=40.9
Q ss_pred ecCcceeeecccccccccCCCcCCcchHHhhc--CCeEEEEEcCCeEEEEEEEEecCccceEEcceEEEEe
Q 034180 16 CRSARVSFNLGFLKSLKMSGRKETVLDLAKFV--DKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLR 84 (102)
Q Consensus 16 ~~~~~~~~~~~~~~~~~ms~~~~~~~~L~~~i--~K~V~V~Lk~Gr~i~G~L~gfD~~mNLVL~da~E~~~ 84 (102)
-||+++.++....+...+...| ...|.+++ +++|.|+|+|||+|.|+|.|||+|||++|+||+|++.
T Consensus 7 ~~~~~~~~~~~~~e~~~~~~~P--l~lL~~~~~~~k~V~V~Lk~gr~~~G~L~~fD~~mNlvL~d~~E~~~ 75 (118)
T 1b34_B 7 PKSEMTPEELQKREEEEFNTGP--LSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWT 75 (118)
T ss_dssp -------------------CCH--HHHHHHHHHHTCEEEEEETTSCEEEEEEEEECTTCCEEEEEEEEC--
T ss_pred chhhcChhhhhhhhhhhcccCh--HHHHHHHhcCCcEEEEEECCCcEEEEEEEEeCCceEEEEeCEEEEEe
Confidence 3799998888888877776543 34477888 5999999999999999999999999999999999873
No 18
>4emg_A Probable U6 snRNA-associated SM-like protein LSM3; SM fold, mRNA decay, LSM proteins, RNA binding protein; 2.70A {Schizosaccharomyces pombe}
Probab=99.64 E-value=1.1e-15 Score=102.54 Aligned_cols=59 Identities=34% Similarity=0.477 Sum_probs=48.9
Q ss_pred CCcchHH-hhcCCeEEEEEcCCeEEEEEEEEecCccceEEcceEEEEeC-------------ceeecEEEEEE
Q 034180 38 ETVLDLA-KFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRG-------------NLYNGIFVIVC 96 (102)
Q Consensus 38 ~~~~~L~-~~i~K~V~V~Lk~Gr~i~G~L~gfD~~mNLVL~da~E~~~~-------------~~~~~iG~iv~ 96 (102)
..|.+|. .++|++|+|+|+||++|+|+|.|||+|||++|+||+|++.+ +..+.+|.++.
T Consensus 8 ~~Pl~lL~~~~~~~V~V~l~~gr~~~G~L~~~D~~mNlvL~d~~E~~~~~~~~~~~~~~~~~~~~r~lG~v~i 80 (93)
T 4emg_A 8 AEPLDLVRLSLDEIVYVKLRGDRELNGRLHAYDEHLNMVLGDAEEIVTIFDDEETDKDKALKTIRKHYEMLFV 80 (93)
T ss_dssp -CTTHHHHTTTTSEEEEEETTTEEEEEEEEEECTTCCEEEEEEEEEEC--------------CEEEEEEEEEE
T ss_pred CCCHHHHHHhCCCEEEEEECCCcEEEEEEEEECCcccEEeecEEEEEeccccCCccccccccccEeEeceEEE
Confidence 3466655 55999999999999999999999999999999999999852 24577888764
No 19
>4emh_A Probable U6 snRNA-associated SM-like protein LSM4; SM fold, mRNA decay, PRE-mRNA splicing, LSM proteins, RNA BI protein; 2.20A {Schizosaccharomyces pombe}
Probab=99.60 E-value=2.1e-15 Score=103.57 Aligned_cols=56 Identities=20% Similarity=0.269 Sum_probs=44.3
Q ss_pred chHHhhcCCeEEEEEcCCeEEEEEEEEecCccceEEcceEEEEeCc-eeecEEEEEE
Q 034180 41 LDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRGN-LYNGIFVIVC 96 (102)
Q Consensus 41 ~~L~~~i~K~V~V~Lk~Gr~i~G~L~gfD~~mNLVL~da~E~~~~~-~~~~iG~iv~ 96 (102)
..|++++|++|.|+|+||++|+|+|.|||+|||++|+||+|...++ ..+.+|.++.
T Consensus 19 ~lL~~~igk~V~V~Lk~G~~~~G~L~~~D~~MNlvL~d~~e~~~dg~~~~~lg~v~I 75 (105)
T 4emh_A 19 TLLNATQGRPILVELKNGETFNGHLENCDNYMNLTLREVIRTMPDGDKFFRLPECYI 75 (105)
T ss_dssp -------CCEEEEEETTSCEEEEEEEEECTTCCEEEEEEEEECTTSCEEEEEEEEEE
T ss_pred HHHHHhCCCEEEEEECCCCEEEEEEEEEcCCceEEEEEEEEEccCCceeeEcCeEEE
Confidence 3488999999999999999999999999999999999999987554 6778888764
No 20
>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A
Probab=99.60 E-value=1.6e-15 Score=116.85 Aligned_cols=57 Identities=23% Similarity=0.375 Sum_probs=50.4
Q ss_pred cchHHhhcCCeEEEEEcCCeEEEEEEEEecCccceEEcceEEEEe----------CceeecEEEEEE
Q 034180 40 VLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLR----------GNLYNGIFVIVC 96 (102)
Q Consensus 40 ~~~L~~~i~K~V~V~Lk~Gr~i~G~L~gfD~~mNLVL~da~E~~~----------~~~~~~iG~iv~ 96 (102)
..+|++|+||+|+|+|+|||+|+|+|+|||+||||||+||+|++. +++.+.+|+++.
T Consensus 6 ~~kL~klIdKrV~V~LkdGRel~GtLkgFDq~MNLVL~Da~E~~~ik~k~~k~~~~~~~R~LGlV~I 72 (231)
T 3pgw_B 6 SSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLL 72 (231)
T ss_pred hHHHHHhcCCeEEEEECCCcEEEEEEEEEcccccEEecCEEEEEeccCcccccccccceeEeceEEE
Confidence 458999999999999999999999999999999999999999873 235678888764
No 21
>1b34_A Protein (small nuclear ribonucleoprotein SM D1); snRNP, splicing, spliceosome, core snRNP domain, systemi erythematosus, SLE, RNA binding protein; 2.50A {Homo sapiens} SCOP: b.38.1.1 PDB: 2y9a_B 2y9b_B 2y9c_B 2y9d_B 3cw1_B 3pgw_X* 3s6n_A
Probab=99.59 E-value=2.5e-15 Score=104.62 Aligned_cols=57 Identities=26% Similarity=0.280 Sum_probs=51.9
Q ss_pred cchHHhhcCCeEEEEEcCCeEEEEEEEEecCccceEEcceEEEEeCceeecEEEEEE
Q 034180 40 VLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRGNLYNGIFVIVC 96 (102)
Q Consensus 40 ~~~L~~~i~K~V~V~Lk~Gr~i~G~L~gfD~~mNLVL~da~E~~~~~~~~~iG~iv~ 96 (102)
...|+++++++|.|+|+||++|+|+|.|||+|||++|+||+|+.+++....+|.++-
T Consensus 4 ~~~L~~~~gk~V~V~Lk~g~~~~G~L~~~D~~MNlvL~d~~e~~~~~~~~~lg~v~I 60 (119)
T 1b34_A 4 VRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSI 60 (119)
T ss_dssp HHHHHTCTTCEEEEEETTCCEEEEEEEEECTTCCEEEEEEEEECTTSCCEEEEEEEE
T ss_pred HHHHHHhCCCEEEEEEcCCCEEEEEEEEEcccceEEeccEEEecCCCceeEcceEEE
Confidence 456899999999999999999999999999999999999999988777788887753
No 22
>2fwk_A U6 snRNA-associated SM-like protein LSM5; structural genomics, structural genomics consortium, SGC, DNA binding protein; 2.14A {Cryptosporidium parvum} SCOP: b.38.1.1 PDB: 3pgg_A
Probab=99.56 E-value=2.1e-15 Score=105.10 Aligned_cols=54 Identities=26% Similarity=0.516 Sum_probs=46.9
Q ss_pred HHhhcCCeEEEEEcCCeEEEEEEEEecCccceEEcceEEEEeC----------ce-----eecEEEEEE
Q 034180 43 LAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRG----------NL-----YNGIFVIVC 96 (102)
Q Consensus 43 L~~~i~K~V~V~Lk~Gr~i~G~L~gfD~~mNLVL~da~E~~~~----------~~-----~~~iG~iv~ 96 (102)
|.++++++|+|+|+|||+|+|+|.|||+||||+|+||+|++.+ .. .+.+|.++.
T Consensus 33 L~~~l~k~V~V~Lk~Gr~~~G~L~~fD~~mNlVL~d~~E~~~~~~~~~~~~~g~~~~~~~~r~lG~v~I 101 (121)
T 2fwk_A 33 IDKCIGNRIYVVMKGDKEFSGVLRGFDEYVNMVLDDVQEYGFKADEEDISGGNKKLKRVMVNRLETILL 101 (121)
T ss_dssp HHHTBTSBCEEEETTTEEECCEEEEECTTCCEEEESCCEEEC---------------CEECCCCSEEEE
T ss_pred HHHHcCCeEEEEECCCcEEEEEEEEEcccCCeEeceEEEEEeccccccccccCcccccccceEcceEEE
Confidence 6899999999999999999999999999999999999999842 23 577888764
No 23
>2y9a_D Small nuclear ribonucleoprotein SM D3; splicing-RNA complex, PRE-mRNA splicing, spliceosome, snRNP biogenesis, SM site, SM fold, heteromeric heptameric ring; 3.60A {Homo sapiens} PDB: 2y9b_D 2y9c_D 2y9d_D 3pgw_Z* 3cw1_D
Probab=99.48 E-value=8.1e-14 Score=98.40 Aligned_cols=57 Identities=12% Similarity=0.064 Sum_probs=50.6
Q ss_pred CcchHHhhcCCeEEEEEcCCeEEEEEEEEecCccceEEcceEEEEeCceeecEEEEE
Q 034180 39 TVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRGNLYNGIFVIV 95 (102)
Q Consensus 39 ~~~~L~~~i~K~V~V~Lk~Gr~i~G~L~gfD~~mNLVL~da~E~~~~~~~~~iG~iv 95 (102)
+...|+++++++|.|+|++|++|+|+|.+||+|||++|+||+|+.++++...+|.++
T Consensus 6 P~~~L~~~~gk~V~VeLknG~~~~G~L~~~D~~MNi~L~dv~e~~~~g~~~~l~~v~ 62 (126)
T 2y9a_D 6 PIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDGRVAQLEQVY 62 (126)
T ss_dssp SHHHHHSCSSCEEEEEESSCCEEEEEEEEECTTSCEEEEEEEEECTTSCCEEEEEEE
T ss_pred HHHHHHHhCCCEEEEEECCCcEEEEEEEEEcCceEEEEeeEEEEcCCCcEeecccEE
Confidence 345688999999999999999999999999999999999999998666677777764
No 24
>1m5q_A SMAP3, small nuclear ribonucleoprotein homolog, SM-like P; OB-like fold, B-sheet toroid, 14-MER, cadmium-binding site, translation; 2.00A {Pyrobaculum aerophilum} SCOP: b.38.1.1
Probab=99.43 E-value=1.2e-13 Score=97.88 Aligned_cols=51 Identities=27% Similarity=0.365 Sum_probs=45.7
Q ss_pred chHHhhcCCeEEEEEcCCeEEEEEEEEecCccceEEcceEEEEeCceeecEEEEE
Q 034180 41 LDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRGNLYNGIFVIV 95 (102)
Q Consensus 41 ~~L~~~i~K~V~V~Lk~Gr~i~G~L~gfD~~mNLVL~da~E~~~~~~~~~iG~iv 95 (102)
+.|.+++|++|.|+|+||++|+|+|.|||+|||++|+||+|+. .+.+|.++
T Consensus 3 ~~L~~~igk~V~V~Lk~G~~~~G~L~~~D~~MNlvL~d~~E~~----~~~lg~v~ 53 (130)
T 1m5q_A 3 AELNNLLGREVQVVLSNGEVYKGVLHAVDNQLNIVLANASNKA----GEKFNRVF 53 (130)
T ss_dssp HHHHHTTTSEEEEEETTSCEEEEEEEEECTTCCEEEEEEECTT----CCEEEEEE
T ss_pred hHHHHhCCCeEEEEECCCcEEEEEEEEEcccceeEEeeEEEEc----CCEeceEE
Confidence 5789999999999999999999999999999999999999983 25677764
No 25
>1y96_A Gemin6, SIP2, GEM-associated protein 6; SM fold, protein complex, RNA binding protein; 2.00A {Homo sapiens}
Probab=98.71 E-value=2.4e-08 Score=66.73 Aligned_cols=42 Identities=21% Similarity=0.237 Sum_probs=40.2
Q ss_pred CCcchHHhhcCCeEEEEEcCCeEEEEEEEEec-CccceEEcce
Q 034180 38 ETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYD-QLLNLVLDEA 79 (102)
Q Consensus 38 ~~~~~L~~~i~K~V~V~Lk~Gr~i~G~L~gfD-~~mNLVL~da 79 (102)
.+|.++++++||+|.|.+.||++|+|.|.+|| ...|++|.|+
T Consensus 7 ~~p~el~~li~KeV~V~l~dg~~y~G~l~tvDp~s~sIvL~n~ 49 (86)
T 1y96_A 7 KGPLEWQDYIYKEVRVTASEKNEYKGWVLTTDPVSANIVLVNF 49 (86)
T ss_dssp SCHHHHHHTTTCEEEEEETTTEEEEEEEEEECTTTCCEEEEEE
T ss_pred CCHHHHHhhcCCEEEEEEcCCCEEEEEEEEECCCceEEEEeec
Confidence 46889999999999999999999999999999 8899999998
No 26
>3sb2_A Protein HFQ; SM-like, RNA chaperone, chaperone; 2.63A {Herbaspirillum seropedicae} SCOP: b.38.1.2
Probab=96.96 E-value=0.00091 Score=43.84 Aligned_cols=34 Identities=24% Similarity=0.473 Sum_probs=27.8
Q ss_pred HHhhc--CCeEEEEEcCCeEEEEEEEEecCccceEEc
Q 034180 43 LAKFV--DKGVQVKLTGGRQVTGTLKGYDQLLNLVLD 77 (102)
Q Consensus 43 L~~~i--~K~V~V~Lk~Gr~i~G~L~gfD~~mNLVL~ 77 (102)
|+.+. ..+|.|.|.+|-.++|.+.+||+|+ +.|+
T Consensus 13 Ln~lrk~k~~VtI~LvnG~~L~G~I~~fD~f~-VlL~ 48 (79)
T 3sb2_A 13 LNALRKEHVPVSIYLVNGIKLQGHVESFDQYV-VLLR 48 (79)
T ss_dssp HHHHHHTTCCEEEEETTSCEEEEEEEEECSSE-EEEE
T ss_pred HHHHHhcCCeEEEEEeCCCEEEEEEEEECCcE-EEEE
Confidence 55554 3579999999999999999999998 4443
No 27
>2ylb_A Protein HFQ; RNA-binding protein, LSM protein, RNA chaperone; 1.15A {Salmonella enterica subsp} PDB: 2yht_A 1hk9_A 2ylc_A* 3gib_A* 3rer_A* 3qo3_A* 3res_A*
Probab=96.85 E-value=0.0019 Score=41.73 Aligned_cols=35 Identities=23% Similarity=0.510 Sum_probs=29.3
Q ss_pred HHhhc--CCeEEEEEcCCeEEEEEEEEecCccceEEcc
Q 034180 43 LAKFV--DKGVQVKLTGGRQVTGTLKGYDQLLNLVLDE 78 (102)
Q Consensus 43 L~~~i--~K~V~V~Lk~Gr~i~G~L~gfD~~mNLVL~d 78 (102)
|+.+. +.+|.|.|.+|..++|.+.+||+|+ +.|++
T Consensus 14 L~~lrk~k~~Vti~L~nG~~l~G~I~~fD~f~-vlL~~ 50 (74)
T 2ylb_A 14 LNALRRERVPVSIYLVNGIKLQGQIESFDQFV-ILLKN 50 (74)
T ss_dssp HHHHHHHTCCEEEEETTSCEEEEEEEEECSSE-EEEES
T ss_pred HHHHHhcCCcEEEEEeCCCEEEEEEEEECCcE-EEEEC
Confidence 66665 5799999999999999999999998 55553
No 28
>3ahu_A Protein HFQ; SM-like motif, protein-RNA complex, translation-RNA complex; 2.20A {Bacillus subtilis} PDB: 3hsb_A
Probab=96.59 E-value=0.0035 Score=40.92 Aligned_cols=43 Identities=30% Similarity=0.397 Sum_probs=29.0
Q ss_pred cCCCcCCcch--HHhhc--CCeEEEEEcCCeEEEEEEEEecCccceE
Q 034180 33 MSGRKETVLD--LAKFV--DKGVQVKLTGGRQVTGTLKGYDQLLNLV 75 (102)
Q Consensus 33 ms~~~~~~~~--L~~~i--~K~V~V~Lk~Gr~i~G~L~gfD~~mNLV 75 (102)
|+++.....+ |+..- +.+|.|-|.+|..++|.+.|||+|+=++
T Consensus 4 ~~~~~~nlQd~fLn~lrk~~~~Vtv~L~nG~~l~G~I~~fD~f~VlL 50 (78)
T 3ahu_A 4 GSMKPINIQDQFLNQIRKENTYVTVFLLNGFQLRGQVKGFDNFTVLL 50 (78)
T ss_dssp ------CHHHHHHHHHHHHTCCEEEEETTSCEEEEEEEEECSSEEEE
T ss_pred ccccccChHHHHHHHHHHcCCcEEEEEeCCeEEEEEEEEEcceEEEE
Confidence 4444443433 55443 6799999999999999999999998333
No 29
>2qtx_A Uncharacterized protein MJ1435; HFQ, SM, RNA-binding protein, sRNA, translational regulation, RNA binding protein; 2.50A {Methanocaldococcus jannaschii}
Probab=96.49 E-value=0.0063 Score=39.10 Aligned_cols=29 Identities=21% Similarity=0.298 Sum_probs=25.4
Q ss_pred cCCeEEEEEcCCeEEEEEEEEecCccceE
Q 034180 47 VDKGVQVKLTGGRQVTGTLKGYDQLLNLV 75 (102)
Q Consensus 47 i~K~V~V~Lk~Gr~i~G~L~gfD~~mNLV 75 (102)
-+.+|.|-|.+|-.++|.+.|||+|+=++
T Consensus 24 ~~~~Vtv~L~NG~~l~G~I~~fD~ftVll 52 (71)
T 2qtx_A 24 NGKKVKIFLRNGEVLDAEVTGVSNYEIMV 52 (71)
T ss_dssp TTCEEEEEETTSCEEEEEEEEECSSEEEE
T ss_pred cCCcEEEEEeCCeEEEEEEEEEcceEEEE
Confidence 45689999999999999999999998443
No 30
>1u1s_A HFQ protein; SM-like bacterial protein, riken structural genomics/proteomics initiative, RSGI, structural genomics, RNA binding protein; 1.60A {Pseudomonas aeruginosa} SCOP: b.38.1.2 PDB: 1u1t_A 3qui_A* 3m4g_A 3inz_A
Probab=96.48 E-value=0.0042 Score=40.97 Aligned_cols=34 Identities=24% Similarity=0.521 Sum_probs=27.9
Q ss_pred HHhhc--CCeEEEEEcCCeEEEEEEEEecCccceEEc
Q 034180 43 LAKFV--DKGVQVKLTGGRQVTGTLKGYDQLLNLVLD 77 (102)
Q Consensus 43 L~~~i--~K~V~V~Lk~Gr~i~G~L~gfD~~mNLVL~ 77 (102)
|+... +.+|.|.|.+|-.++|.+.|||+|+ +.|+
T Consensus 12 Ln~lrk~~~~Vtv~L~NG~~l~G~I~~fD~ft-VlL~ 47 (82)
T 1u1s_A 12 LNTLRKERVPVSIYLVNGIKLQGQIESFDQFV-ILLK 47 (82)
T ss_dssp HHHHHHTTCCEEEEETTSCEEEEEEEEECSSE-EEEE
T ss_pred HHHHHHcCCcEEEEEeCCcEEEEEEEEEcceE-EEEe
Confidence 44443 5789999999999999999999998 4444
No 31
>1kq1_A HFQ, HOST factor for Q beta; hexamer, RNA binding protein, translational regulator, SM motif; 1.55A {Staphylococcus aureus} SCOP: b.38.1.2 PDB: 1kq2_A
Probab=96.25 E-value=0.0073 Score=39.18 Aligned_cols=33 Identities=27% Similarity=0.464 Sum_probs=27.7
Q ss_pred HHhhc--CCeEEEEEcCCeEEEEEEEEecCccceE
Q 034180 43 LAKFV--DKGVQVKLTGGRQVTGTLKGYDQLLNLV 75 (102)
Q Consensus 43 L~~~i--~K~V~V~Lk~Gr~i~G~L~gfD~~mNLV 75 (102)
|+.+. +.+|.|.|.+|-.++|.+.+||+|+=++
T Consensus 12 Ln~lrk~k~~VtI~L~nG~~l~G~I~~fD~f~VlL 46 (77)
T 1kq1_A 12 LENFKANQTEVTVFFLNGFQMKGVIEEYDKYVVSL 46 (77)
T ss_dssp HHHHHHHTCEEEEEETTSCEEEEEEEEECSSEEEE
T ss_pred HHHHHhcCCeEEEEEeCCCEEEEEEEEECCcEEEE
Confidence 55554 6799999999999999999999998333
No 32
>2y90_A Protein HFQ; RNA-binding protein, SM-like, RNA chaperone; 2.25A {Escherichia coli} PDB: 3qhs_A
Probab=95.93 E-value=0.011 Score=40.47 Aligned_cols=34 Identities=24% Similarity=0.516 Sum_probs=28.0
Q ss_pred HHhhcC--CeEEEEEcCCeEEEEEEEEecCccceEEc
Q 034180 43 LAKFVD--KGVQVKLTGGRQVTGTLKGYDQLLNLVLD 77 (102)
Q Consensus 43 L~~~i~--K~V~V~Lk~Gr~i~G~L~gfD~~mNLVL~ 77 (102)
|+.+.. .+|.|.|.+|-.++|.+.+||+|+ +.|+
T Consensus 14 Ln~lrk~k~~VtI~LvNG~~L~G~I~~fD~f~-VlL~ 49 (104)
T 2y90_A 14 LNALRRERVPVSIYLVNGIKLQGQIESFDQFV-ILLK 49 (104)
T ss_dssp HHHHHHTTCCEEEEETTSCEEEEEEEEECSSE-EEEE
T ss_pred HHHHHhcCCcEEEEEeCCCEEEEEEEEECCcE-EEEE
Confidence 565544 489999999999999999999998 4444
No 33
>1ycy_A Conserved hypothetical protein; structural genomics, southeast collaboratory for structural genomics, secsg, protein structure initiative; 2.80A {Pyrococcus furiosus} SCOP: b.38.1.4
Probab=94.65 E-value=0.032 Score=35.62 Aligned_cols=42 Identities=26% Similarity=0.548 Sum_probs=34.0
Q ss_pred HHhhcCCeEEEEEcCCeEEEEEEEEecCccceEEcceEEEEeC
Q 034180 43 LAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRG 85 (102)
Q Consensus 43 L~~~i~K~V~V~Lk~Gr~i~G~L~gfD~~mNLVL~da~E~~~~ 85 (102)
|.++-|+||-+...+...++|+|.-||+-. +.|.|+..+...
T Consensus 11 L~~WKg~rvAv~vg~ehSFtGiledFDeEv-iLL~dV~D~~GN 52 (71)
T 1ycy_A 11 LKEWKGHKVAVSVGGDHSFTGTLEDFDEEV-ILLKDVVDVIGN 52 (71)
T ss_dssp HHHHTTSEEEEEEC----CEEEEEEECSSE-EEEEEEEETTEE
T ss_pred HHHhCCcEEEEEecCcceeeeehhhcCcce-eehhhHHHHhcc
Confidence 889999999999999999999999999876 788999987643
No 34
>4a53_A EDC3; RNA binding protein; NMR {Schizosaccharomyces pombe} PDB: 4a54_A
Probab=93.71 E-value=0.1 Score=36.73 Aligned_cols=37 Identities=27% Similarity=0.453 Sum_probs=31.9
Q ss_pred hHHhhcCCeEEEEEcCCeEEEEEEEEecCccceEE--cce
Q 034180 42 DLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVL--DEA 79 (102)
Q Consensus 42 ~L~~~i~K~V~V~Lk~Gr~i~G~L~gfD~~mNLVL--~da 79 (102)
...+|+|..|.|.|+||..++|++..+|. -+|+| .+|
T Consensus 6 ~~sqFlGy~V~v~LkDgs~~qG~I~~vd~-k~LtL~~~~a 44 (125)
T 4a53_A 6 SVADFYGSNVEVLLNNDSKARGVITNFDS-SNSILQLRLA 44 (125)
T ss_dssp CHHHHTTCEEEEEETTSCEEEEEEEEEET-TTTEEEEEET
T ss_pred cHHHhcCceEEEEECCCCEeeEEEEeecC-CeeEEecccc
Confidence 57899999999999999999999999984 34666 776
No 35
>3hfo_A SSR3341 protein; HFQ, SM, RNA-binding protein, sRNA, translational regulation binding protein; 1.30A {Synechocystis SP}
Probab=91.41 E-value=0.23 Score=31.64 Aligned_cols=38 Identities=26% Similarity=0.294 Sum_probs=30.7
Q ss_pred CcchHHhhcC--CeEEEEEcCCeEEEEEEEEecCccceEEc
Q 034180 39 TVLDLAKFVD--KGVQVKLTGGRQVTGTLKGYDQLLNLVLD 77 (102)
Q Consensus 39 ~~~~L~~~i~--K~V~V~Lk~Gr~i~G~L~gfD~~mNLVL~ 77 (102)
+.-.|++|+. .+|.|+|.+|..++|.+.-+|.+. +.|.
T Consensus 10 svR~lQ~~ik~k~~V~I~L~tG~~l~G~i~WQD~~c-l~L~ 49 (70)
T 3hfo_A 10 SVRQVQLLIKDQTPVEIKLLTGDSLFGTIRWQDTDG-LGLV 49 (70)
T ss_dssp HHHHHHHHHHHTCEEEEEETTSCEEEEEEEEECSSE-EEEE
T ss_pred cHHHHHHHHhhCceEEEEecCCCEEEEEEEEeCCCE-EEEE
Confidence 3445777864 689999999999999999999987 4444
No 36
>3hfn_A ASL2047 protein; HFQ, SM, RNA-binding protein, sRNA, translational regulation binding protein; 2.31A {Nostoc SP}
Probab=91.40 E-value=0.23 Score=31.76 Aligned_cols=40 Identities=20% Similarity=0.390 Sum_probs=31.6
Q ss_pred CcchHHhhcC--CeEEEEEcCCeEEEEEEEEecCccceEEcce
Q 034180 39 TVLDLAKFVD--KGVQVKLTGGRQVTGTLKGYDQLLNLVLDEA 79 (102)
Q Consensus 39 ~~~~L~~~i~--K~V~V~Lk~Gr~i~G~L~gfD~~mNLVL~da 79 (102)
+...|++|+. ++|.|+|.+|..++|.+.-+|.+. +.|.+.
T Consensus 12 svR~lQ~~Ik~k~~V~I~L~tGd~l~G~i~WQD~~c-l~L~~~ 53 (72)
T 3hfn_A 12 SIRQLQNLIKQAAPVEIKLVTGDAITGRVLWQDPTC-VCIADE 53 (72)
T ss_dssp HHHHHHHHHSSCCEEEEEETTSCEEEEEEEEECSSE-EEEEC-
T ss_pred cHHHHHHHHhhCceEEEEecCCCEEEEEEEEECCCE-EEEEcC
Confidence 3445788875 589999999999999999999988 555444
No 37
>1ib8_A Conserved protein SP14.3; nucleic acid binding protein, ribosomal protein, essential gene, structural genomics; NMR {Streptococcus pneumoniae} SCOP: b.38.2.1 d.52.4.1
Probab=91.40 E-value=0.25 Score=35.29 Aligned_cols=32 Identities=25% Similarity=0.254 Sum_probs=26.7
Q ss_pred cchHHhhcCCeEEEEE----cCCeEEEEEEEEecCc
Q 034180 40 VLDLAKFVDKGVQVKL----TGGRQVTGTLKGYDQL 71 (102)
Q Consensus 40 ~~~L~~~i~K~V~V~L----k~Gr~i~G~L~gfD~~ 71 (102)
+.+..+++|+.|.|++ .+.+.++|.|.++|+-
T Consensus 96 ~~df~r~~G~~V~V~l~~~~~g~k~~~G~L~~~~~~ 131 (164)
T 1ib8_A 96 KDAVAGAVGKYIHVGLYQAIDKQKVFEGTLLAFEED 131 (164)
T ss_dssp HHHHHHHCSEEEEEECSSCSSSCSEEEEEEEEEETT
T ss_pred HHHHHHhCCcEEEEEEecccCCceEEEEEEEEEeCC
Confidence 4457889999999999 4558999999999854
No 38
>2vc8_A Enhancer of mRNA-decapping protein 3; P-BODY component, cytoplasm, SM-like protein, protein-binding; 1.31A {Homo sapiens}
Probab=88.31 E-value=0.85 Score=30.05 Aligned_cols=36 Identities=14% Similarity=0.230 Sum_probs=32.9
Q ss_pred hhcCCeEEEEEcCCe-EEEEEEEEecCc-cceEEcceE
Q 034180 45 KFVDKGVQVKLTGGR-QVTGTLKGYDQL-LNLVLDEAV 80 (102)
Q Consensus 45 ~~i~K~V~V~Lk~Gr-~i~G~L~gfD~~-mNLVL~da~ 80 (102)
+|+|+.|.+..+++- .|+|.|...|.. -||.|.++.
T Consensus 6 ~~iGs~VSi~c~d~lGvYQG~i~~vd~~~~tItL~~~f 43 (84)
T 2vc8_A 6 DWLGSIVSINCGDSLGVYQGRVSAVDQVSQTISLTRPF 43 (84)
T ss_dssp TTTTCEEEEECCTTTCEEEEEEEEEETTTTEEEEEEEE
T ss_pred cccCCEEEEEECCCceEEEEEEEEeccCCCeEEEehhh
Confidence 799999999999998 999999999966 579999994
No 39
>2vxe_A CG10686-PA; EDC3, CAR-1, P-bodies, decapping, mRNA decay, LSM proteins, translational repression, transcription; NMR {Drosophila melanogaster}
Probab=87.91 E-value=1.2 Score=29.53 Aligned_cols=40 Identities=13% Similarity=0.096 Sum_probs=34.1
Q ss_pred HhhcCCeEEEEEcCCeEEEEEEEEecCc-cceEEcceEEEE
Q 034180 44 AKFVDKGVQVKLTGGRQVTGTLKGYDQL-LNLVLDEAVEFL 83 (102)
Q Consensus 44 ~~~i~K~V~V~Lk~Gr~i~G~L~gfD~~-mNLVL~da~E~~ 83 (102)
..|+|+++.+..+.+-.|+|+|...|.. --+.|.|+.-+-
T Consensus 9 ~~yIGs~iSLISk~dIRYeGiL~~In~~~sTi~L~nVrsfG 49 (88)
T 2vxe_A 9 LPELGSKISLISKADIRYEGRLYTVDPQECTIALSSVRSFG 49 (88)
T ss_dssp SCCTTCEEEEEETTTEEEEEEEEEEETTTTEEEEEEEEECC
T ss_pred CcccCCeEEEEECCCceEEEEEeeecCcccEEEEEeeeEec
Confidence 3589999999999999999999999944 568888877654
No 40
>3rux_A BIRA bifunctional protein; biotin-protein ligase, ligase-ligase inhibitor complex; HET: BS5; 1.70A {Mycobacterium tuberculosis} PDB: 3l1a_A 3l2z_A 2cgh_A
Probab=87.36 E-value=0.75 Score=34.82 Aligned_cols=33 Identities=33% Similarity=0.536 Sum_probs=29.2
Q ss_pred cCCeEEEEEcCCeEEEEEEEEecCccceEEcce
Q 034180 47 VDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEA 79 (102)
Q Consensus 47 i~K~V~V~Lk~Gr~i~G~L~gfD~~mNLVL~da 79 (102)
+|++|.+...+|.+++|+..|.|+.-.|+++..
T Consensus 223 ~g~~V~v~~~~~~~~~G~~~gId~~G~L~v~~~ 255 (270)
T 3rux_A 223 IGSRVRVELPGGQDVVGIARDIDDQGRLCLDVG 255 (270)
T ss_dssp TTSEEEEECTTSCEEEEEEEEECTTSCEEEEET
T ss_pred cCCEEEEEECCCeEEEEEEEEECCCCeEEEEEC
Confidence 589999998889999999999999999988643
No 41
>2fb7_A SM-like protein, LSM-14_N (RAP55); DR.13312, BC055387, AAH55387, stronGly BENT five-stranded antiparallel beta- sheet, structural genomics, PSI; NMR {Danio rerio} SCOP: b.38.1.5 PDB: 2vxf_A
Probab=86.51 E-value=1 Score=30.18 Aligned_cols=41 Identities=12% Similarity=0.164 Sum_probs=32.5
Q ss_pred hHHhhcCCeEEEEEcCCeEEEEEEEEecC-ccceEEcceEEE
Q 034180 42 DLAKFVDKGVQVKLTGGRQVTGTLKGYDQ-LLNLVLDEAVEF 82 (102)
Q Consensus 42 ~L~~~i~K~V~V~Lk~Gr~i~G~L~gfD~-~mNLVL~da~E~ 82 (102)
.-..|+|+++.+..+.+-.|+|+|...|. ---+.|.|+.-+
T Consensus 13 ~~~~~IGs~ISLISk~dIRYeGiL~~In~~~sTiaL~nVRsf 54 (95)
T 2fb7_A 13 GGTPYIGSKISLISKAEIRYEGILYTIDTENSTVALAKVRSF 54 (95)
T ss_dssp ---CCSSEEEEEEETTTEEEEEEEEEEETTTTEEEEESCCCC
T ss_pred ccCcccCCeEEEEECCCceEEEEEecccCccCEEEEEeeeEe
Confidence 34578999999999999999999999994 356788876554
No 42
>1y96_B Gemin7, SIP3, GEM-associated protein 7; SM fold, protein complex, RNA binding protein; 2.00A {Homo sapiens}
Probab=78.26 E-value=4.1 Score=26.78 Aligned_cols=39 Identities=21% Similarity=0.310 Sum_probs=31.2
Q ss_pred cchHHhhcCCeEEEEEcCCeEEEEEEEEecC-ccceEEcc
Q 034180 40 VLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQ-LLNLVLDE 78 (102)
Q Consensus 40 ~~~L~~~i~K~V~V~Lk~Gr~i~G~L~gfD~-~mNLVL~d 78 (102)
.-.|....|++|.+.+.++.+..|...+.|. ..|+..++
T Consensus 21 Lr~l~~m~~~~v~f~m~E~t~V~a~F~a~d~d~~~f~Vs~ 60 (85)
T 1y96_B 21 LRSLLAMVGHQVSFTLHEGVRVAAHFGATDLDVANFYVSQ 60 (85)
T ss_dssp HHHHHHHTTSEEEEEEGGGCEEEEEEEEECTTCCEEEEEE
T ss_pred HHHHHHhCCCceEEEEeCCeEEEEEEEecCcccceeEhhh
Confidence 3346677899999999999999999999994 45665443
No 43
>2xk0_A Polycomb protein PCL; transcription, aromatic CAGE; NMR {Drosophila melanogaster}
Probab=76.51 E-value=6.9 Score=24.79 Aligned_cols=24 Identities=25% Similarity=0.347 Sum_probs=21.3
Q ss_pred cCCeEEEEEcCCeEEEEEEEEecC
Q 034180 47 VDKGVQVKLTGGRQVTGTLKGYDQ 70 (102)
Q Consensus 47 i~K~V~V~Lk~Gr~i~G~L~gfD~ 70 (102)
.+..|.++-+||+-|-|+++...+
T Consensus 18 ~geDVL~rw~DG~fYLGtIVd~~~ 41 (69)
T 2xk0_A 18 LQEDVFIKCNDGRFYLGTIIDQTS 41 (69)
T ss_dssp TTCEEEEECTTSCEEEEEEEEECS
T ss_pred cCCeEEEEecCCCEEEEEEEecCC
Confidence 789999999999999999976653
No 44
>2ej9_A Putative biotin ligase; biotin biosynthesis, monomer, X-RAY diffraction, structural genomics, NPPSFA; HET: BTN; 2.00A {Methanocaldococcus jannaschii}
Probab=70.76 E-value=6.1 Score=28.98 Aligned_cols=32 Identities=19% Similarity=0.208 Sum_probs=27.5
Q ss_pred hcCCeEEEEEcCCeEEEEEEEEecCccceEEcc
Q 034180 46 FVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDE 78 (102)
Q Consensus 46 ~i~K~V~V~Lk~Gr~i~G~L~gfD~~mNLVL~d 78 (102)
.+|++|.+...++..++|+..|.|+.-.|+ ++
T Consensus 190 ~~g~~V~v~~~~~~~~~G~~~gId~~G~L~-~~ 221 (237)
T 2ej9_A 190 TIGKQVKILLSNNEIITGKVYDIDFDGIVL-GT 221 (237)
T ss_dssp STTCEEEEEETTSCEEEEEEEEECSSEEEE-EE
T ss_pred ccCCEEEEEECCCeEEEEEEEEECCCCeEE-Ec
Confidence 378999999887777999999999998888 53
No 45
>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A*
Probab=66.10 E-value=8.2 Score=29.33 Aligned_cols=31 Identities=19% Similarity=0.482 Sum_probs=26.6
Q ss_pred cCCeEEEEEcCCeEEEEEEEEecCccceEEcc
Q 034180 47 VDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDE 78 (102)
Q Consensus 47 i~K~V~V~Lk~Gr~i~G~L~gfD~~mNLVL~d 78 (102)
+|++|.+... +..+.|+..|+|+.-.|+++.
T Consensus 272 ~g~~V~v~~~-~~~~~G~~~gid~~G~L~v~~ 302 (321)
T 1bia_A 272 INRPVKLIIG-DKEIFGISRGIDKQGALLLEQ 302 (321)
T ss_dssp TTSEEEEEET-TEEEEEEEEEECTTSCEEEEE
T ss_pred cCCEEEEEEC-CcEEEEEEEEECCCCeEEEEE
Confidence 6899999865 568999999999999998864
No 46
>2dxu_A Biotin--[acetyl-COA-carboxylase] ligase; biotin biosynthesis, dimer, X-RAY diffraction, structural genomics, NPPSFA; HET: BT5; 1.28A {Pyrococcus horikoshii} PDB: 2dzc_A 2ejg_A* 2e3y_A* 2e41_A* 2e64_A 2ejf_A* 2zgw_A* 1wqw_A* 1wpy_A* 1wq7_A 1wnl_A* 1x01_A* 2dkg_A* 2dth_A* 2dti_A* 2dto_A* 2fyk_A* 2djz_A* 2hni_A 2e10_A ...
Probab=62.87 E-value=5.7 Score=29.22 Aligned_cols=30 Identities=17% Similarity=0.262 Sum_probs=23.4
Q ss_pred cCCeEEEEEcCCeEEEEEEEEecCccceEEcc
Q 034180 47 VDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDE 78 (102)
Q Consensus 47 i~K~V~V~Lk~Gr~i~G~L~gfD~~mNLVL~d 78 (102)
+|++|.+...++ ++|+..|.|+.-.|++++
T Consensus 188 ~g~~V~v~~~~~--~~G~~~gId~~G~L~v~~ 217 (235)
T 2dxu_A 188 LGVRVKILGDGS--FEGIAEDIDDFGRLIIRL 217 (235)
T ss_dssp CSSEEEC----C--CEEEEEEECTTSCEEEEC
T ss_pred cCCeEEEEECCe--EEEEEEEECCCCEEEEEE
Confidence 689999987766 999999999999999864
No 47
>3rkx_A Biotin-[acetyl-COA-carboxylase] ligase; biotin protein ligase, 3 domains, enzyme DNA binding, biotin coupling domains; 2.10A {Staphylococcus aureus} PDB: 3rir_A* 3rkw_A 3rky_A* 3v7c_A* 3v7s_A* 3v8j_A 3v7r_A 3v8k_A* 3v8l_A* 4dq2_A*
Probab=60.54 E-value=9.9 Score=29.22 Aligned_cols=32 Identities=13% Similarity=0.147 Sum_probs=26.0
Q ss_pred hcCCeEEEEEcCCeEEEEEEEEecCccceEEcc
Q 034180 46 FVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDE 78 (102)
Q Consensus 46 ~i~K~V~V~Lk~Gr~i~G~L~gfD~~mNLVL~d 78 (102)
.+|++|++... +..++|+..|.|+.-.|++++
T Consensus 277 ~~g~~V~v~~~-~~~~~G~~~gId~~G~Llv~~ 308 (323)
T 3rkx_A 277 IWNRTLLFTEN-DKQFKGQAIDLDYDGYLIVRD 308 (323)
T ss_dssp CSSSCEEEECC--CEEEEEEEEECTTSCEEEEE
T ss_pred hcCCEEEEEEC-CeEEEEEEEEECCCCEEEEEE
Confidence 36899999754 568999999999999998853
No 48
>2eay_A Biotin [acetyl-COA-carboxylase] ligase; biotin biosynthesis, dimer, X-RAY diffraction, structural genomics, NPPSFA; 1.95A {Aquifex aeolicus} PDB: 3efs_A* 3fjp_A 3efr_A*
Probab=58.89 E-value=4.9 Score=29.47 Aligned_cols=30 Identities=20% Similarity=0.274 Sum_probs=25.1
Q ss_pred cCCeEEEEEcCCeEEEEEEEEecCccceEEcc
Q 034180 47 VDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDE 78 (102)
Q Consensus 47 i~K~V~V~Lk~Gr~i~G~L~gfD~~mNLVL~d 78 (102)
+|++|.+...++ ++|+..|.|+.-.|+++.
T Consensus 187 ~g~~V~v~~~~~--~~G~~~gId~~G~L~v~~ 216 (233)
T 2eay_A 187 LGEEVKLLGEGK--ITGKLVGLSEKGGALILT 216 (233)
T ss_dssp TTSEEEETTEEE--EEEEEEEECTTSCEEEEE
T ss_pred cCCEEEEEECCe--EEEEEEEECCCCeEEEEE
Confidence 689998875544 999999999999998864
No 49
>3bfm_A Biotin protein ligase-like protein of unknown FUN; structural genomics, joint center for structural genomics, J protein structure initiative; HET: 2PE; 1.70A {Silicibacter SP}
Probab=58.30 E-value=14 Score=26.88 Aligned_cols=27 Identities=22% Similarity=0.450 Sum_probs=23.6
Q ss_pred cCCeEEEEEcCCeEEEEEEEEecCccceEEcc
Q 034180 47 VDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDE 78 (102)
Q Consensus 47 i~K~V~V~Lk~Gr~i~G~L~gfD~~mNLVL~d 78 (102)
+|++|.+ +| ++|+..|.|+.-.|+++.
T Consensus 193 ~g~~V~v---~~--~~G~~~gId~~G~L~v~~ 219 (235)
T 3bfm_A 193 MGEARTE---AG--RSGTFLGVDEDFGMLLRD 219 (235)
T ss_dssp TTSEEEE---TT--EEEEEEEECTTCCEEEEC
T ss_pred cCCEEEE---Ee--EEEEEEEECCCCeEEEEe
Confidence 6899998 45 999999999999999864
No 50
>2rm4_A CG6311-PB, DM EDC3; enhancer of mRNA decapping, P-BODY component, SM-like protein,, protein binding; NMR {Drosophila melanogaster}
Probab=49.47 E-value=41 Score=22.63 Aligned_cols=37 Identities=11% Similarity=0.145 Sum_probs=31.5
Q ss_pred HhhcCCeEEEEEcCCe-EEEEEEEEecCccceEEcceEE
Q 034180 44 AKFVDKGVQVKLTGGR-QVTGTLKGYDQLLNLVLDEAVE 81 (102)
Q Consensus 44 ~~~i~K~V~V~Lk~Gr-~i~G~L~gfD~~mNLVL~da~E 81 (102)
.+|+|+-|.|...+.- .|+|.+...|. -+|.|.+|..
T Consensus 8 edwiG~~VSI~C~d~LGVyQG~I~~V~~-~~ItL~kaFr 45 (103)
T 2rm4_A 8 QDWIGCAVSIACDEVLGVFQGLIKQISA-EEITIVRAFR 45 (103)
T ss_dssp GGGTTCEEEEEECTTTCEEEEEEEEEET-TEEEEEEEEE
T ss_pred cceeceEEEEeeCCcceEeeEEEEEccc-ceeEEhhhhh
Confidence 4899999999999875 99999999995 4488888764
No 51
>4hcz_A PHD finger protein 1; protein-peptide complex, tudor, histone binding, H3K36ME3, N nucleus, transcription; HET: M3L; 1.85A {Homo sapiens}
Probab=47.11 E-value=25 Score=21.43 Aligned_cols=25 Identities=28% Similarity=0.312 Sum_probs=22.2
Q ss_pred cCCeEEEEEcCCeEEEEEEEEecCc
Q 034180 47 VDKGVQVKLTGGRQVTGTLKGYDQL 71 (102)
Q Consensus 47 i~K~V~V~Lk~Gr~i~G~L~gfD~~ 71 (102)
-|..|.++-+||+-|-|+++.+|..
T Consensus 6 ~GedVLarwsDG~fYlGtI~~V~~~ 30 (58)
T 4hcz_A 6 EGQDVLARWTDGLLYLGTIKKVDSA 30 (58)
T ss_dssp TTCEEEEECTTSCEEEEEEEEEETT
T ss_pred cCCEEEEEecCCCEEeEEEEEEecC
Confidence 4678999999999999999999855
No 52
>4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone, hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A 4a9g_A
Probab=43.52 E-value=31 Score=27.20 Aligned_cols=31 Identities=23% Similarity=0.443 Sum_probs=27.2
Q ss_pred CeEEEEEcCCeEEEEEEEEecCccceEEcce
Q 034180 49 KGVQVKLTGGRQVTGTLKGYDQLLNLVLDEA 79 (102)
Q Consensus 49 K~V~V~Lk~Gr~i~G~L~gfD~~mNLVL~da 79 (102)
.++.|.+.||+.+.+.+.+.|...+|.|=..
T Consensus 88 ~~i~V~~~dg~~~~a~vv~~d~~~DlAllkv 118 (436)
T 4a8c_A 88 QKISIQLNDGREFDAKLIGSDDQSDIALLQI 118 (436)
T ss_pred CEEEEEeCCCCEEEEEEEEEcCCCCEEEEEe
Confidence 5799999999999999999999888876554
No 53
>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease, trypsin, chaperone, PDZ, ATP-independent, temperature-regulated, periplasm; 2.80A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3ou0_A 4a8d_A 3otp_A 3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A
Probab=43.22 E-value=31 Score=27.44 Aligned_cols=31 Identities=23% Similarity=0.403 Sum_probs=26.8
Q ss_pred CeEEEEEcCCeEEEEEEEEecCccceEEcce
Q 034180 49 KGVQVKLTGGRQVTGTLKGYDQLLNLVLDEA 79 (102)
Q Consensus 49 K~V~V~Lk~Gr~i~G~L~gfD~~mNLVL~da 79 (102)
.++.|.+.||+++.+.+.+.|...+|.+=..
T Consensus 111 ~~i~V~~~dg~~~~a~vv~~d~~~DlAvlkv 141 (448)
T 1ky9_A 111 TVIKVQLSDGRKFDAKMVGKDPRSDIALIQI 141 (448)
T ss_dssp EEEEEEETTSCEEEEEEEEEETTTTEEEEEE
T ss_pred CEEEEEECCCCEEEEEEEEEcCCCCEEEEEe
Confidence 4789999999999999999999888876544
No 54
>2e12_A SM-like motif, hypothetical protein XCC3642; novel SM-like motif, LSM motif, X- RAY crystallography, translation; 1.70A {Xanthomonas campestris PV}
Probab=42.71 E-value=25 Score=23.54 Aligned_cols=17 Identities=29% Similarity=0.657 Sum_probs=15.8
Q ss_pred CeEEEEEcCCeEEEEEE
Q 034180 49 KGVQVKLTGGRQVTGTL 65 (102)
Q Consensus 49 K~V~V~Lk~Gr~i~G~L 65 (102)
.+|.+.|.||+.+.|++
T Consensus 29 ~~v~i~l~DGs~l~GTv 45 (101)
T 2e12_A 29 ERVRIELDDGSMIAGTV 45 (101)
T ss_dssp CEEEEEETTSCEEEEEE
T ss_pred eEEEEEEcCCCeEeeee
Confidence 69999999999999996
No 55
>3stj_A Protease DEGQ; serine protease, PDZ domain, protease, chaperone, DEGP, DEGQ hydrolase; 2.60A {Escherichia coli}
Probab=34.91 E-value=45 Score=25.51 Aligned_cols=31 Identities=23% Similarity=0.443 Sum_probs=26.2
Q ss_pred CeEEEEEcCCeEEEEEEEEecCccceEEcce
Q 034180 49 KGVQVKLTGGRQVTGTLKGYDQLLNLVLDEA 79 (102)
Q Consensus 49 K~V~V~Lk~Gr~i~G~L~gfD~~mNLVL~da 79 (102)
.++.|.+.||+.+.+.+.+.|...+|.|=..
T Consensus 88 ~~i~V~~~dg~~~~a~vv~~d~~~DlAlLkv 118 (345)
T 3stj_A 88 QKISIQLNDGREFDAKLIGSDDQSDIALLQI 118 (345)
T ss_dssp EEEEEECTTSCEEEEEEEEEETTTTEEEEEE
T ss_pred CEEEEEeCCCcEEEEEEEEEcCCCCEEEEEE
Confidence 4788999999999999999998888766443
No 56
>2j3t_D Trafficking protein particle complex subunit 4; trapp, palmitate, transport, lipoprotein, ER-golgi transport apparatus, protein transport; HET: PLM; 2.4A {Homo sapiens} PDB: 2zmv_A 2jsn_A
Probab=34.86 E-value=17 Score=27.31 Aligned_cols=61 Identities=18% Similarity=0.255 Sum_probs=37.1
Q ss_pred EEEEEEecCcceeee-cccccccccCCCcCCcchHH-hhcCCeEEEEE--cCCeEEEEEEEEecC
Q 034180 10 VSFFIVCRSARVSFN-LGFLKSLKMSGRKETVLDLA-KFVDKGVQVKL--TGGRQVTGTLKGYDQ 70 (102)
Q Consensus 10 ~~~~~~~~~~~~~~~-~~~~~~~~ms~~~~~~~~L~-~~i~K~V~V~L--k~Gr~i~G~L~gfD~ 70 (102)
-||||+-||.=--|. -+..++....+.=.-|+++. ++.|+++.|.. +||.....++.+.++
T Consensus 4 y~~yi~~~~~~liy~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ng 68 (219)
T 2j3t_D 4 FSVYVVNKAGGLIYQLDSYAPRAEAEKTFSYPLDLLLKLHDERVLVAFGQRDGIRVGHAVLAING 68 (219)
T ss_dssp EEEEEECTTSCEEEEEECC----CEEEEECSSCSSEEEECSSSEEEEECCCTTCCTTCEEEEETT
T ss_pred EEEEEEecCCceEEecccCCCCcceeeeccCCcceeeeeccceeEEeecccCCccccceeeecCC
Confidence 589999998433333 33434544443334455655 57889999975 688777777777654
No 57
>3sti_A Protease DEGQ; serine protease, PDZ domain, chaperone, hydrolase; 2.60A {Escherichia coli}
Probab=34.31 E-value=45 Score=24.31 Aligned_cols=31 Identities=23% Similarity=0.443 Sum_probs=25.6
Q ss_pred CeEEEEEcCCeEEEEEEEEecCccceEEcce
Q 034180 49 KGVQVKLTGGRQVTGTLKGYDQLLNLVLDEA 79 (102)
Q Consensus 49 K~V~V~Lk~Gr~i~G~L~gfD~~mNLVL~da 79 (102)
.++.|.+.||+.+.+.+.+.|....|.|=..
T Consensus 88 ~~i~V~~~dg~~~~a~vv~~d~~~DlAlLkv 118 (245)
T 3sti_A 88 QKISIQLNDGREFDAKLIGSDDQSDIALLQI 118 (245)
T ss_dssp -CEEEECTTSCEEEEEEEEEETTTTEEEEEE
T ss_pred CEEEEEECCCCEEEEEEEEecCCCCEEEEEe
Confidence 4689999999999999999998877765443
No 58
>2qqr_A JMJC domain-containing histone demethylation protein 3A; histone lysine demethylase, tandem hybrid tudor domains, metal binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 b.34.9.1 PDB: 2qqs_A* 2gfa_A* 2gf7_A*
Probab=32.47 E-value=47 Score=22.63 Aligned_cols=23 Identities=17% Similarity=0.111 Sum_probs=21.2
Q ss_pred cCCeEEEEEcCCeEEEEEEEEec
Q 034180 47 VDKGVQVKLTGGRQVTGTLKGYD 69 (102)
Q Consensus 47 i~K~V~V~Lk~Gr~i~G~L~gfD 69 (102)
+|.+|..+-++|+.|.|++++..
T Consensus 8 vGq~V~akh~ngryy~~~V~~~~ 30 (118)
T 2qqr_A 8 AGQKVISKHKNGRFYQCEVVRLT 30 (118)
T ss_dssp TTCEEEEECTTSSEEEEEEEEEE
T ss_pred cCCEEEEECCCCCEEeEEEEEEe
Confidence 78999999999999999998875
No 59
>3pv2_A DEGQ; trypsin fold, PDZ domain, chaperone protease, hydrolase; 2.15A {Legionella fallonii} PDB: 3pv3_A 3pv5_A 3pv4_A
Probab=31.52 E-value=41 Score=26.72 Aligned_cols=31 Identities=26% Similarity=0.337 Sum_probs=26.7
Q ss_pred CeEEEEEcCCeEEEEEEEEecCccceEEcce
Q 034180 49 KGVQVKLTGGRQVTGTLKGYDQLLNLVLDEA 79 (102)
Q Consensus 49 K~V~V~Lk~Gr~i~G~L~gfD~~mNLVL~da 79 (102)
.++.|.+.||+.+.+.+.+.|...+|.|=..
T Consensus 102 ~~i~V~~~dg~~~~a~vv~~d~~~DlAlLkv 132 (451)
T 3pv2_A 102 SLITVTLQDGRRLKARLIGGDSETDLAVLKI 132 (451)
T ss_dssp EEEEEECTTSCEEECEEEEEETTTTEEEEEC
T ss_pred CEEEEEEcCCCEEEEEEEecCcCCcEEEEEE
Confidence 4789999999999999999999888876544
No 60
>3fb9_A Uncharacterized protein; unknown function, structural genomics, MCSG, PSI2, protein S initiative; 1.80A {Streptococcus pneumoniae}
Probab=30.60 E-value=34 Score=22.44 Aligned_cols=27 Identities=22% Similarity=0.341 Sum_probs=23.2
Q ss_pred hHHhhcCCeEEEEEcCCe----EEEEEEEEe
Q 034180 42 DLAKFVDKGVQVKLTGGR----QVTGTLKGY 68 (102)
Q Consensus 42 ~L~~~i~K~V~V~Lk~Gr----~i~G~L~gf 68 (102)
.|..++|++|.++.+.|| +-+|+|..-
T Consensus 19 ~l~~~vG~~V~l~An~GRkK~~er~GvL~et 49 (90)
T 3fb9_A 19 EIKAHEGQVVEMTLENGRKRQKNRLGKLIEV 49 (90)
T ss_dssp HHHHTTTSEEEEEECCSSSCCSCEEEEEEEE
T ss_pred HHHHcCCCEEEEEecCCcccEEEEEEEEEEe
Confidence 578899999999999996 678998765
No 61
>3lgi_A Protease DEGS; stress-sensor, HTRA, PDZ OMP, hydrolase, serine PR; 1.65A {Escherichia coli} PDB: 2qf3_A 2qf0_A 2rce_A* 3lh3_A* 3b8j_A 2qgr_A 3lh1_A 3lgy_A 3lgu_A 3lgv_A 3lgw_A 3lgt_A 2r3u_A
Probab=29.26 E-value=74 Score=22.48 Aligned_cols=30 Identities=30% Similarity=0.409 Sum_probs=25.4
Q ss_pred CeEEEEEcCCeEEEEEEEEecCccceEEcc
Q 034180 49 KGVQVKLTGGRQVTGTLKGYDQLLNLVLDE 78 (102)
Q Consensus 49 K~V~V~Lk~Gr~i~G~L~gfD~~mNLVL~d 78 (102)
.++.|.+.+|+.+.+.+.++|...+|.|=.
T Consensus 77 ~~~~V~~~~g~~~~a~vv~~d~~~DlAll~ 106 (237)
T 3lgi_A 77 DQIIVALQDGRVFEALLVGSDSLTDLAVLK 106 (237)
T ss_dssp SEEEEECTTSCEEEEEEEEEETTTTEEEEE
T ss_pred CEEEEEeCCCCEEEEEEEEEcCCCCEEEEE
Confidence 478899999999999999999887776543
No 62
>1sg5_A ORF, hypothetical protein; A+B protein, montreal-kingston bacterial structural genomics initiative, BSGI, structural genomics, transcription; NMR {Escherichia coli} SCOP: b.137.1.2
Probab=28.99 E-value=25 Score=22.56 Aligned_cols=25 Identities=20% Similarity=0.258 Sum_probs=20.1
Q ss_pred chHHhhcCCeEEEEEcCCeEEEEEE
Q 034180 41 LDLAKFVDKGVQVKLTGGRQVTGTL 65 (102)
Q Consensus 41 ~~L~~~i~K~V~V~Lk~Gr~i~G~L 65 (102)
+++.=..+.++.+.++||..++|+.
T Consensus 18 LElAc~~~~~l~l~l~dGe~~~g~a 42 (86)
T 1sg5_A 18 LELACQHHLMLTLELKDGEKLQAKA 42 (86)
T ss_dssp HHHHHTTTTCEEEECTTTCCEEESS
T ss_pred HHHHHHcCCeEEEEEeCCCEEEEEE
Confidence 3455556889999999999999964
No 63
>1y8t_A Hypothetical protein RV0983; serine protease, structural genomics, PSI, protein structure initiative; 2.00A {Mycobacterium tuberculosis} SCOP: b.36.1.4 b.47.1.1 PDB: 2z9i_A
Probab=28.61 E-value=64 Score=23.89 Aligned_cols=32 Identities=19% Similarity=0.248 Sum_probs=26.1
Q ss_pred CCeEEEEEcCCeEEEEEEEEecCccceEEcce
Q 034180 48 DKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEA 79 (102)
Q Consensus 48 ~K~V~V~Lk~Gr~i~G~L~gfD~~mNLVL~da 79 (102)
..++.|.+.+|+.+.+.+.++|...+|.|=..
T Consensus 63 ~~~i~V~~~~g~~~~a~vv~~d~~~DlAllkl 94 (324)
T 1y8t_A 63 PPKTTVTFSDGRTAPFTVVGADPTSDIAVVRV 94 (324)
T ss_dssp -CEEEEEETTCCEECEEEEECCTTTTEEEEEE
T ss_pred ceEEEEEeCCCCEEEEEEEEeCCCCCEEEEEE
Confidence 35789999999999999999998887766443
No 64
>1lcy_A HTRA2 serine protease; apoptosis, PDZ domain, caspase activation, binding, hydrolase; 2.00A {Homo sapiens} SCOP: b.36.1.4 b.47.1.1
Probab=28.20 E-value=73 Score=23.81 Aligned_cols=31 Identities=16% Similarity=0.294 Sum_probs=25.7
Q ss_pred CeEEEEEcCCeEEEEEEEEecCccceEEcce
Q 034180 49 KGVQVKLTGGRQVTGTLKGYDQLLNLVLDEA 79 (102)
Q Consensus 49 K~V~V~Lk~Gr~i~G~L~gfD~~mNLVL~da 79 (102)
.++.|.+.+|+.+.+.+.++|...+|.|=..
T Consensus 71 ~~i~V~~~~g~~~~a~v~~~d~~~DlAllkl 101 (325)
T 1lcy_A 71 RRVRVRLLSGDTYEAVVTAVDPVADIATLRI 101 (325)
T ss_dssp SEEEEECTTSCEEEEEEEEEETTTTEEEEEC
T ss_pred CEEEEEeCCCCEEEEEEEEECCCCCEEEEEE
Confidence 4688999999999999999998877766443
No 65
>3tjo_A Serine protease HTRA1; peptidase, hydrolase; HET: BOG; 2.30A {Homo sapiens} PDB: 3tjn_A 3nwu_A
Probab=28.11 E-value=82 Score=22.29 Aligned_cols=32 Identities=22% Similarity=0.348 Sum_probs=26.4
Q ss_pred CCeEEEEEcCCeEEEEEEEEecCccceEEcce
Q 034180 48 DKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEA 79 (102)
Q Consensus 48 ~K~V~V~Lk~Gr~i~G~L~gfD~~mNLVL~da 79 (102)
..++.|.+.+|+.+.+.+.++|...+|.|=..
T Consensus 86 ~~~i~V~~~~g~~~~a~v~~~d~~~DlAlL~l 117 (231)
T 3tjo_A 86 KHRVKVELKNGATYEAKIKDVDEKADIALIKI 117 (231)
T ss_dssp SSEEEEECTTSCEEEEEEEEEETTTTEEEEEC
T ss_pred CceEEEEcCCCCEEEEEEEEecCCCCEEEEEe
Confidence 35789999999999999999998877766443
No 66
>1te0_A Protease DEGS; two domains, serine protease, PDZ, alpha-beta protein, hydro; 2.20A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3gdv_A* 3gcn_A* 3gds_A* 3gdu_A* 3gco_A* 1sot_A 1soz_A 1vcw_A 2r3y_A
Probab=27.93 E-value=75 Score=23.55 Aligned_cols=31 Identities=29% Similarity=0.345 Sum_probs=25.8
Q ss_pred CeEEEEEcCCeEEEEEEEEecCccceEEcce
Q 034180 49 KGVQVKLTGGRQVTGTLKGYDQLLNLVLDEA 79 (102)
Q Consensus 49 K~V~V~Lk~Gr~i~G~L~gfD~~mNLVL~da 79 (102)
.++.|.+.+|+.+.+.+.++|...+|.|=..
T Consensus 66 ~~i~V~~~~g~~~~a~v~~~d~~~DlAllk~ 96 (318)
T 1te0_A 66 DQIIVALQDGRVFEALLVGSDSLTDLAVLII 96 (318)
T ss_dssp SEEEEECTTSCEEEEEEEEEETTTTEEEEEC
T ss_pred CEEEEEeCCCCEEEEEEEEeCCCceEEEEEE
Confidence 3688899999999999999998888776443
No 67
>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus}
Probab=25.63 E-value=92 Score=19.28 Aligned_cols=25 Identities=24% Similarity=0.299 Sum_probs=22.7
Q ss_pred cCCeEEEEEcCCeEEEEEEEEecCc
Q 034180 47 VDKGVQVKLTGGRQVTGTLKGYDQL 71 (102)
Q Consensus 47 i~K~V~V~Lk~Gr~i~G~L~gfD~~ 71 (102)
.|..|+..-.||+.|.|++...|+.
T Consensus 16 vGddVLA~wtDGl~Y~gtI~~V~~~ 40 (66)
T 2eqj_A 16 EGQDVLARWSDGLFYLGTIKKINIL 40 (66)
T ss_dssp TTCEEEEECTTSCEEEEEEEEEETT
T ss_pred CCCEEEEEEccCcEEEeEEEEEccC
Confidence 6788999999999999999999964
No 68
>3tee_A Flagella basal BODY P-ring formation protein FLGA; chaperone, flagellar P-ring formation, flagellar FLGI protei periplasmic protein; 1.95A {Salmonella typhimurium}
Probab=24.69 E-value=49 Score=24.17 Aligned_cols=22 Identities=32% Similarity=0.592 Sum_probs=19.3
Q ss_pred hcCCeEEEEEcCCeEEEEEEEE
Q 034180 46 FVDKGVQVKLTGGRQVTGTLKG 67 (102)
Q Consensus 46 ~i~K~V~V~Lk~Gr~i~G~L~g 67 (102)
.+|..|+|++.+|+.+.|+..+
T Consensus 169 ~~Gd~IrVr~~Sgkiv~g~V~~ 190 (219)
T 3tee_A 169 AVAQNARVRMTSGQIVSGTVDS 190 (219)
T ss_dssp CTTSEEEEEETTSCEEEEEECT
T ss_pred CCCCEEEEECCCCCEEEEEEec
Confidence 5788999999999999999865
No 69
>3qo6_A Protease DO-like 1, chloroplastic; protease, HTRA, PH-sensor, hydrolase, photosynthesis; 2.50A {Arabidopsis thaliana}
Probab=24.09 E-value=98 Score=23.33 Aligned_cols=31 Identities=16% Similarity=0.279 Sum_probs=26.1
Q ss_pred CeEEEEEcCCeEEEEEEEEecCccceEEcce
Q 034180 49 KGVQVKLTGGRQVTGTLKGYDQLLNLVLDEA 79 (102)
Q Consensus 49 K~V~V~Lk~Gr~i~G~L~gfD~~mNLVL~da 79 (102)
.++.|.+.+|+.+.+.+.++|...+|.|=..
T Consensus 77 ~~i~V~~~~g~~~~a~~v~~d~~~DlAlLkl 107 (348)
T 3qo6_A 77 SDLRVTLADQTTFDAKVVGFDQDKDVAVLRI 107 (348)
T ss_dssp SEEEEECTTSCEEEEEEEEEEGGGTEEEEEC
T ss_pred cEEEEEECCCCEEEEEEEEEcCcCCEEEEEE
Confidence 4788999999999999999998887766443
No 70
>3num_A Serine protease HTRA1; DEGP, hydrolase; 2.75A {Homo sapiens} PDB: 3nzi_A 2ytw_A 2joa_A
Probab=21.15 E-value=1.4e+02 Score=22.13 Aligned_cols=30 Identities=23% Similarity=0.375 Sum_probs=25.5
Q ss_pred CeEEEEEcCCeEEEEEEEEecCccceEEcc
Q 034180 49 KGVQVKLTGGRQVTGTLKGYDQLLNLVLDE 78 (102)
Q Consensus 49 K~V~V~Lk~Gr~i~G~L~gfD~~mNLVL~d 78 (102)
.++.|.+.+|+.+.+.+.+.|...+|.|=.
T Consensus 70 ~~i~V~~~~g~~~~a~~~~~d~~~DlAlL~ 99 (332)
T 3num_A 70 HRVKVELKNGATYEAKIKDVDEKADIALIK 99 (332)
T ss_dssp SEEEEEETTSCEEEEEEEEEETTTTEEEEE
T ss_pred CEEEEEECCCCEEEEEEEEecCCCCeEEEE
Confidence 468899999999999999999887776643
No 71
>3mkv_A Putative amidohydrolase; sargasso SEA, structural genomics, protein structure initiat NEW YORK structural genomix research consortium, nysgxrc; HET: KCX; 2.40A {Undefined}
Probab=20.76 E-value=24 Score=24.14 Aligned_cols=23 Identities=17% Similarity=0.368 Sum_probs=15.2
Q ss_pred CeEEEEEcCCeEEEEEEEEecCc
Q 034180 49 KGVQVKLTGGRQVTGTLKGYDQL 71 (102)
Q Consensus 49 K~V~V~Lk~Gr~i~G~L~gfD~~ 71 (102)
++|.-.+++|+.+++.|.|.|.|
T Consensus 399 ~~v~~Vi~~G~vv~~~l~g~~G~ 421 (426)
T 3mkv_A 399 EHIPLVMKDGRLFVNELEGHEGH 421 (426)
T ss_dssp TTCCEEEETTEEEEECCC-----
T ss_pred CCccEEEECCEEEECCccCCCCC
Confidence 45667789999999999999876
No 72
>4g9s_B Inhibitor of G-type lysozyme, goose-type lysozyme; hydrolase inhibitor, hydrolase-hydrolase inhibitor; HET: FLC; 0.95A {Escherichia coli} PDB: 4dy3_A* 4dxz_A* 4dy5_A
Probab=20.54 E-value=45 Score=21.45 Aligned_cols=22 Identities=45% Similarity=0.815 Sum_probs=15.6
Q ss_pred CCeEEEEEcCC---eEEEEEEEEec
Q 034180 48 DKGVQVKLTGG---RQVTGTLKGYD 69 (102)
Q Consensus 48 ~K~V~V~Lk~G---r~i~G~L~gfD 69 (102)
++.|.|...-| .+++|+|.|.|
T Consensus 2 ~~~~~V~F~~G~~~a~v~G~I~g~~ 26 (111)
T 4g9s_B 2 GKNVNVEFRKGHSSAQYSGEIKGYD 26 (111)
T ss_dssp CCEEECCCCTTCSEEEEEEEEETTC
T ss_pred CcceEEEECCCCCCeEEEEEEeCCC
Confidence 46677777644 67888888876
No 73
>4fln_A Protease DO-like 2, chloroplastic; protease, DEG, PDZ, hydrolase; 2.80A {Arabidopsis thaliana}
Probab=20.24 E-value=89 Score=25.91 Aligned_cols=29 Identities=17% Similarity=0.082 Sum_probs=24.6
Q ss_pred CeEEEEEc-CCeEEEEEEEEecCccceEEc
Q 034180 49 KGVQVKLT-GGRQVTGTLKGYDQLLNLVLD 77 (102)
Q Consensus 49 K~V~V~Lk-~Gr~i~G~L~gfD~~mNLVL~ 77 (102)
.++.|++. ||+++.+.+.|.|....|.+=
T Consensus 97 ~~i~V~~~~dg~~~~A~vv~~D~~~DLAvL 126 (539)
T 4fln_A 97 TQVKVKRRGDDRKYVAKVLVRGVDCDIALL 126 (539)
T ss_dssp EEEEEECTTCCCCEEEEEEEEETTTTEEEE
T ss_pred CeEEEEEccCCEEEEEEEEEECCCCCEEEE
Confidence 47888885 899999999999998877664
Done!