BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 034181
(102 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3MOY|A Chain A, Crystal Structure Of Probable Enoyl-Coa Hydratase From
Mycob Smegmatis
Length = 263
Score = 42.7 bits (99), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 45/90 (50%), Gaps = 6/90 (6%)
Query: 6 ITAEQGERWGLVNHVVEEGELLKKAHAVAEAMIKNNQDLVLRYKAVINDGLKLDLGHALA 65
+TAE+ ER GLV+ +V +LL +A AVA+ + + ++ K IN+ + L +
Sbjct: 171 LTAEEAERVGLVSRIVPAADLLDEALAVAQRIARMSRPAGRAVKDAINEAFERPLSAGMR 230
Query: 66 LEKER------AHDYYNGMTKEQFKKMQEF 89
E++ HD GMT K+ EF
Sbjct: 231 YERDAFYAMFDTHDQTEGMTAFLEKRTPEF 260
>pdb|3KQF|A Chain A, 1.8 Angstrom Resolution Crystal Structure Of Enoyl-Coa
Hydratase From Bacillus Anthracis.
pdb|3KQF|B Chain B, 1.8 Angstrom Resolution Crystal Structure Of Enoyl-Coa
Hydratase From Bacillus Anthracis.
pdb|3KQF|C Chain C, 1.8 Angstrom Resolution Crystal Structure Of Enoyl-Coa
Hydratase From Bacillus Anthracis.
pdb|3KQF|D Chain D, 1.8 Angstrom Resolution Crystal Structure Of Enoyl-Coa
Hydratase From Bacillus Anthracis.
pdb|3KQF|E Chain E, 1.8 Angstrom Resolution Crystal Structure Of Enoyl-Coa
Hydratase From Bacillus Anthracis.
pdb|3KQF|F Chain F, 1.8 Angstrom Resolution Crystal Structure Of Enoyl-Coa
Hydratase From Bacillus Anthracis
Length = 265
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 47/86 (54%), Gaps = 6/86 (6%)
Query: 6 ITAEQGERWGLVNHVVEEGELLKKAHAVAEAMIKNNQDLVLRYKAVINDGLKLDLGHALA 65
I+A++ + +GLV VV L +KA +AE + N V K I++G+++DL L
Sbjct: 173 ISAQEAKEYGLVEFVVPVHLLEEKAIEIAEKIASNGPIAVRLAKEAISNGIQVDLHTGLQ 232
Query: 66 LEKERAHDYYNGM--TKEQFKKMQEF 89
EK+ Y G+ TK++ + +Q F
Sbjct: 233 XEKQ----AYEGVIHTKDRLEGLQAF 254
>pdb|3R0O|A Chain A, Crystal Structure Of Carnitinyl-Coa Hydratase From
Mycobacterium Avium
pdb|3R0O|B Chain B, Crystal Structure Of Carnitinyl-Coa Hydratase From
Mycobacterium Avium
pdb|3R0O|C Chain C, Crystal Structure Of Carnitinyl-Coa Hydratase From
Mycobacterium Avium
Length = 273
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 25/40 (62%)
Query: 1 MAATPITAEQGERWGLVNHVVEEGELLKKAHAVAEAMIKN 40
+ P+TA RWGL+N VV +G +++ A A+AE + N
Sbjct: 173 LTGEPMTASDALRWGLINEVVPDGTVVEAALALAERITCN 212
>pdb|3RSI|A Chain A, The Structure Of A Putative Enoyl-Coa HydrataseISOMERASE
FROM Mycobacterium Abscessus Atcc 19977 DSM 44196
pdb|3RSI|B Chain B, The Structure Of A Putative Enoyl-Coa HydrataseISOMERASE
FROM Mycobacterium Abscessus Atcc 19977 DSM 44196
pdb|3RSI|C Chain C, The Structure Of A Putative Enoyl-Coa HydrataseISOMERASE
FROM Mycobacterium Abscessus Atcc 19977 DSM 44196
Length = 265
Score = 35.4 bits (80), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 5 PITAEQGERWGLVNHVVEEGELLKKAHAVAEAMIKNNQDLVLRYK-AVINDG 55
P+TA + +GLV HVV G L KA ++A+ +++N V K A++ G
Sbjct: 172 PLTAFEAYHFGLVGHVVPAGTALDKARSLADRIVRNGPLAVRNAKEAIVRSG 223
>pdb|3P85|A Chain A, Crystal Structure Enoyl-Coa Hydratase From Mycobacterium
Avium
Length = 270
Score = 34.7 bits (78), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 42/87 (48%), Gaps = 9/87 (10%)
Query: 6 ITAEQGERWGLVNHVVEEGELLKKAHAVAEAMIKNNQDLVLRYKAVINDGLKLDLGHALA 65
++A R GLV VV +LL A AVA +++ NNQ+ V +A++ ++D
Sbjct: 179 LSAADALRAGLVTEVVPHDQLLGAARAVAASIVGNNQNAV---RALLTSYHRIDDA---- 231
Query: 66 LEKERAHDYYNGMTKEQFKKMQEFIAA 92
+ A + M QF+ + IAA
Sbjct: 232 --QTSAGLWQEAMAARQFRTSGDDIAA 256
>pdb|3QYR|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase Echa16_2
Mycobacterium Paratuberculosis Atcc Baa-968 K-10
pdb|3QYR|B Chain B, Crystal Structure Of Enoyl-Coa Hydratase Echa16_2
Mycobacterium Paratuberculosis Atcc Baa-968 K-10
pdb|3QYR|C Chain C, Crystal Structure Of Enoyl-Coa Hydratase Echa16_2
Mycobacterium Paratuberculosis Atcc Baa-968 K-10
pdb|3QYR|D Chain D, Crystal Structure Of Enoyl-Coa Hydratase Echa16_2
Mycobacterium Paratuberculosis Atcc Baa-968 K-10
pdb|3QYR|E Chain E, Crystal Structure Of Enoyl-Coa Hydratase Echa16_2
Mycobacterium Paratuberculosis Atcc Baa-968 K-10
pdb|3QYR|F Chain F, Crystal Structure Of Enoyl-Coa Hydratase Echa16_2
Mycobacterium Paratuberculosis Atcc Baa-968 K-10
Length = 253
Score = 33.9 bits (76), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 38/87 (43%), Gaps = 9/87 (10%)
Query: 6 ITAEQGERWGLVNHVVEEGELLKKAHAVAEAMIKNNQDLVLRYKAVINDGLKLDLGHALA 65
++A R GLV VV +LL A AVA +++ NNQ+ V A H +
Sbjct: 162 LSAADALRAGLVTEVVPHDQLLGAAQAVAASIVGNNQNAVRALLASY---------HRID 212
Query: 66 LEKERAHDYYNGMTKEQFKKMQEFIAA 92
+ A + M QF+ + IAA
Sbjct: 213 DAQTSAGLWQEAMAARQFRTSGDDIAA 239
>pdb|3PE8|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase From
Mycobacterium Smegmatis
Length = 256
Score = 33.5 bits (75), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 43/91 (47%), Gaps = 6/91 (6%)
Query: 6 ITAEQGERWGLVNHVVEEGELLKKAHAVAEAMIKNNQDLVLRYKAVINDGLKLD---LGH 62
++A+ R GLV VV +LL A VA +++ NNQ V +A+++ ++D G
Sbjct: 163 LSAQDALRAGLVTEVVAHDDLLTAARRVAASIVGNNQKAV---RALLDSYHRIDALQTGG 219
Query: 63 ALALEKERAHDYYNGMTKEQFKKMQEFIAAR 93
AL E E A + + + + + R
Sbjct: 220 ALWAEAEAARQWMRSTSGDDIAASRASVIER 250
>pdb|4F47|A Chain A, The Structure Of Enoyl-Coa Hydratase Echa19 From
Mycobacterium Marinum
Length = 278
Score = 33.1 bits (74), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 22/36 (61%)
Query: 6 ITAEQGERWGLVNHVVEEGELLKKAHAVAEAMIKNN 41
ITA + + GLV HVV +G+ L KA +AE + N
Sbjct: 186 ITAAEAKEMGLVGHVVPDGQALTKALEIAEIIAANG 221
>pdb|1EF8|A Chain A, Crystal Structure Of Methylmalonyl Coa Decarboxylase
pdb|1EF8|B Chain B, Crystal Structure Of Methylmalonyl Coa Decarboxylase
pdb|1EF8|C Chain C, Crystal Structure Of Methylmalonyl Coa Decarboxylase
pdb|1EF9|A Chain A, The Crystal Structure Of Methylmalonyl Coa Decarboxylase
Complexed With 2s-Carboxypropyl Coa
Length = 261
Score = 32.3 bits (72), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 25/39 (64%), Gaps = 4/39 (10%)
Query: 1 MAATPITAEQGERWGLVNHVVEEGEL----LKKAHAVAE 35
A+PITA++ G++NHVVE EL L+ AH ++E
Sbjct: 162 FTASPITAQRALAVGILNHVVEVEELEDFTLQMAHHISE 200
>pdb|1WZ8|A Chain A, Crystal Structure Of Probable Enoyl-Coa Dehydratase From
Thermus Thermophilus Hb8
pdb|1WZ8|B Chain B, Crystal Structure Of Probable Enoyl-Coa Dehydratase From
Thermus Thermophilus Hb8
pdb|1WZ8|C Chain C, Crystal Structure Of Probable Enoyl-Coa Dehydratase From
Thermus Thermophilus Hb8
pdb|1WZ8|D Chain D, Crystal Structure Of Probable Enoyl-Coa Dehydratase From
Thermus Thermophilus Hb8
pdb|1WZ8|E Chain E, Crystal Structure Of Probable Enoyl-Coa Dehydratase From
Thermus Thermophilus Hb8
pdb|1WZ8|F Chain F, Crystal Structure Of Probable Enoyl-Coa Dehydratase From
Thermus Thermophilus Hb8
Length = 264
Score = 32.3 bits (72), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 50/98 (51%), Gaps = 13/98 (13%)
Query: 5 PITAEQGERWGLVNHVVEEGELLKKAHAVAEAMIKNNQDLVLRYKAVINDGLKLDLGH-- 62
P+T E+ ER GLV VE+ ++ +KA VAE + + ++ + K +N + L H
Sbjct: 174 PLTGEEAERLGLVALAVEDEKVYEKALEVAERLAQGPKEALHHTKHALNHWYRSFLPHFE 233
Query: 63 -ALALEKERAHDYYNGMTKEQFKKMQEFIAARSSKKPS 99
+LALE + G + K+++E + A K+P
Sbjct: 234 LSLALE-------FLGFSG---KELEEGLKALKEKRPP 261
>pdb|3PEA|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase From Bacillus
Anthracis Str. 'ames Ancestor'
pdb|3PEA|B Chain B, Crystal Structure Of Enoyl-Coa Hydratase From Bacillus
Anthracis Str. 'ames Ancestor'
pdb|3PEA|C Chain C, Crystal Structure Of Enoyl-Coa Hydratase From Bacillus
Anthracis Str. 'ames Ancestor'
pdb|3PEA|D Chain D, Crystal Structure Of Enoyl-Coa Hydratase From Bacillus
Anthracis Str. 'ames Ancestor'
pdb|3PEA|E Chain E, Crystal Structure Of Enoyl-Coa Hydratase From Bacillus
Anthracis Str. 'ames Ancestor'
pdb|3PEA|F Chain F, Crystal Structure Of Enoyl-Coa Hydratase From Bacillus
Anthracis Str. 'ames Ancestor'
Length = 261
Score = 30.4 bits (67), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 36/81 (44%), Gaps = 14/81 (17%)
Query: 1 MAATPITAEQGERWGLVNHVVEEGELLKKAHAVAEAMIKNNQDLVLRYKAVINDGLKLDL 60
+ +TPIT + +WGLVN V E L + +K + + + A L+L
Sbjct: 164 LTSTPITGAEALKWGLVNGVFAEETFL-------DDTLKVAKQIAGKSPATARAVLEL-- 214
Query: 61 GHALALEKERAHDYYNGMTKE 81
L+ ++ YY G+ +E
Sbjct: 215 -----LQTTKSSHYYEGVQRE 230
>pdb|3TLF|A Chain A, Crystal Structure Of An Enoyl-Coa HydrataseISOMERASE FROM
Mycobacterium Paratuberculosis
pdb|3TLF|B Chain B, Crystal Structure Of An Enoyl-Coa HydrataseISOMERASE FROM
Mycobacterium Paratuberculosis
pdb|3TLF|C Chain C, Crystal Structure Of An Enoyl-Coa HydrataseISOMERASE FROM
Mycobacterium Paratuberculosis
pdb|3TLF|D Chain D, Crystal Structure Of An Enoyl-Coa HydrataseISOMERASE FROM
Mycobacterium Paratuberculosis
pdb|3TLF|E Chain E, Crystal Structure Of An Enoyl-Coa HydrataseISOMERASE FROM
Mycobacterium Paratuberculosis
pdb|3TLF|F Chain F, Crystal Structure Of An Enoyl-Coa HydrataseISOMERASE FROM
Mycobacterium Paratuberculosis
Length = 274
Score = 30.4 bits (67), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 35/59 (59%), Gaps = 2/59 (3%)
Query: 6 ITAEQGERWGLVNHVVEEGELLKKAHAVAEAMIKNNQDLVLR-YKAVINDGLKLDLGHA 63
++A++ GL++ +VE LL++AH +A+ ++ +N L +R + I GL + L A
Sbjct: 182 MSAQRAYELGLISEIVEHDRLLERAHEIAD-IVNSNAPLAVRGTRLAILKGLNVPLHEA 239
>pdb|4FZW|C Chain C, Crystal Structure Of The Paaf-paag Hydratase-isomerase
Complex From E.coli
pdb|4FZW|D Chain D, Crystal Structure Of The Paaf-paag Hydratase-isomerase
Complex From E.coli
Length = 274
Score = 30.0 bits (66), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 39/90 (43%), Gaps = 6/90 (6%)
Query: 6 ITAEQGERWGLVNHVVEEGELLKKAHAVAEAMIKNNQDLVLRYKAVINDGLKLDLGHALA 65
++AEQ WG++ VV++ L A +A + + K IN L L
Sbjct: 182 LSAEQAHEWGMIWQVVDDETLADTAQQLARHLATQPTFGLGLIKQAINSAETNTLDTQLD 241
Query: 66 LEKE------RAHDYYNGMTKEQFKKMQEF 89
LE++ R+ DY G++ K+ +F
Sbjct: 242 LERDYQRLAGRSADYREGVSAFLAKRSPQF 271
>pdb|2VX2|A Chain A, Crystal Structure Of Human Enoyl Coenzyme A Hydratase
Domain-Containing Protein 3 (Echdc3)
pdb|2VX2|B Chain B, Crystal Structure Of Human Enoyl Coenzyme A Hydratase
Domain-Containing Protein 3 (Echdc3)
pdb|2VX2|C Chain C, Crystal Structure Of Human Enoyl Coenzyme A Hydratase
Domain-Containing Protein 3 (Echdc3)
pdb|2VX2|D Chain D, Crystal Structure Of Human Enoyl Coenzyme A Hydratase
Domain-Containing Protein 3 (Echdc3)
pdb|2VX2|E Chain E, Crystal Structure Of Human Enoyl Coenzyme A Hydratase
Domain-Containing Protein 3 (Echdc3)
pdb|2VX2|F Chain F, Crystal Structure Of Human Enoyl Coenzyme A Hydratase
Domain-Containing Protein 3 (Echdc3)
pdb|2VX2|G Chain G, Crystal Structure Of Human Enoyl Coenzyme A Hydratase
Domain-Containing Protein 3 (Echdc3)
pdb|2VX2|H Chain H, Crystal Structure Of Human Enoyl Coenzyme A Hydratase
Domain-Containing Protein 3 (Echdc3)
pdb|2VX2|I Chain I, Crystal Structure Of Human Enoyl Coenzyme A Hydratase
Domain-Containing Protein 3 (Echdc3)
Length = 287
Score = 30.0 bits (66), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 34/69 (49%)
Query: 5 PITAEQGERWGLVNHVVEEGELLKKAHAVAEAMIKNNQDLVLRYKAVINDGLKLDLGHAL 64
PI+A++ GL++ VV E EL ++ +A + ++ +V KA L DLG A
Sbjct: 195 PISAQEALLHGLLSKVVPEAELQEETMRIARKIASLSRPVVSLGKATFYKQLPQDLGTAY 254
Query: 65 ALEKERAHD 73
L + D
Sbjct: 255 YLTSQAMVD 263
>pdb|3R9T|A Chain A, Structure Of Echa1_1 From Mycobacterium Paratuberculosis
Atcc Baa-968 K-10
pdb|3R9T|B Chain B, Structure Of Echa1_1 From Mycobacterium Paratuberculosis
Atcc Baa-968 K-10
pdb|3R9T|C Chain C, Structure Of Echa1_1 From Mycobacterium Paratuberculosis
Atcc Baa-968 K-10
Length = 267
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 1 MAATPITAEQGERWGLVNHVVEEGEL 26
+ P++A WGL+N VVE G +
Sbjct: 167 LTGEPLSAAAARDWGLINEVVEAGSV 192
>pdb|3R9S|A Chain A, Structure Of A Carnitinyl-Coa Dehydratase From
Mycobacterium Avium 104
pdb|3R9S|B Chain B, Structure Of A Carnitinyl-Coa Dehydratase From
Mycobacterium Avium 104
pdb|3R9S|C Chain C, Structure Of A Carnitinyl-Coa Dehydratase From
Mycobacterium Avium 104
Length = 267
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 1 MAATPITAEQGERWGLVNHVVEEGEL 26
+ P++A WGL+N VVE G +
Sbjct: 167 LTGEPLSAAAARDWGLINEVVEAGSV 192
>pdb|3OME|A Chain A, Crystal Structure Of A Probable Enoyl-Coa Hydratase From
Mycobacterium Smegmatis
pdb|3OME|B Chain B, Crystal Structure Of A Probable Enoyl-Coa Hydratase From
Mycobacterium Smegmatis
pdb|3OME|C Chain C, Crystal Structure Of A Probable Enoyl-Coa Hydratase From
Mycobacterium Smegmatis
pdb|3OME|D Chain D, Crystal Structure Of A Probable Enoyl-Coa Hydratase From
Mycobacterium Smegmatis
pdb|3OME|E Chain E, Crystal Structure Of A Probable Enoyl-Coa Hydratase From
Mycobacterium Smegmatis
pdb|3OME|F Chain F, Crystal Structure Of A Probable Enoyl-Coa Hydratase From
Mycobacterium Smegmatis
Length = 282
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 6 ITAEQGERWGLVNHVVEEGELLKKAHAVAE 35
+TAE+ ER G+VN VV EL + +AE
Sbjct: 189 LTAEEAERTGMVNRVVARDELDAQTRELAE 218
>pdb|3D34|A Chain A, Structure Of The F-Spondin Domain Of Mindin
pdb|3D34|B Chain B, Structure Of The F-Spondin Domain Of Mindin
Length = 223
Score = 27.3 bits (59), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 8 AEQGERWGLVNHVVEEGELLKKAHAVAEA 36
AE+GE W L+ + GE L+ H V A
Sbjct: 72 AERGEAWALMKEIEAAGEALQSVHEVFSA 100
>pdb|2WTB|A Chain A, Arabidopsis Thaliana Multifuctional Protein, Mfp2
Length = 725
Score = 26.9 bits (58), Expect = 2.8, Method: Composition-based stats.
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 1 MAATPITAEQGERWGLVNHVVEEGELLKKA 30
+ + P+ AE+G GL++ VV EL+ A
Sbjct: 168 LTSKPVKAEEGHSLGLIDAVVPPAELVTTA 197
>pdb|1Z15|A Chain A, Crystal Structure Analysis Of Periplasmic
Leu/ile/val-binding Protein In Superopen Form
pdb|1Z16|A Chain A, Crystal Structure Analysis Of Periplasmic
Leu/ile/val-binding Protein With Bound Leucine
pdb|1Z17|A Chain A, Crystal Structure Analysis Of Periplasmic
LeuILEVAL-Binding Protein With Bound Ligand Isoleucine
pdb|1Z18|A Chain A, Crystal Structure Analysis Of Periplasmic
LeuILEVAL-Binding Protein With Bound Valine
Length = 344
Score = 26.6 bits (57), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 51 VINDGLKLDLGHALALEKERAHDYY 75
V+NDG+K +GH + + A D Y
Sbjct: 65 VVNDGIKYVIGHLCSSSTQPASDIY 89
>pdb|2LIV|A Chain A, Periplasmic Binding Protein Structure And Function.
Refined X-Ray Structures Of The
LeucineISOLEUCINEVALINE-Binding Protein And Its Complex
With Leucine
Length = 344
Score = 26.6 bits (57), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 51 VINDGLKLDLGHALALEKERAHDYY 75
V+NDG+K +GH + + A D Y
Sbjct: 65 VVNDGIKYVIGHLCSSSTQPASDIY 89
>pdb|1HZD|A Chain A, Crystal Structure Of Human Auh Protein, An Rna-Binding
Homologue Of Enoyl-Coa Hydratase
pdb|1HZD|B Chain B, Crystal Structure Of Human Auh Protein, An Rna-Binding
Homologue Of Enoyl-Coa Hydratase
pdb|1HZD|C Chain C, Crystal Structure Of Human Auh Protein, An Rna-Binding
Homologue Of Enoyl-Coa Hydratase
pdb|1HZD|D Chain D, Crystal Structure Of Human Auh Protein, An Rna-Binding
Homologue Of Enoyl-Coa Hydratase
pdb|1HZD|E Chain E, Crystal Structure Of Human Auh Protein, An Rna-Binding
Homologue Of Enoyl-Coa Hydratase
pdb|1HZD|F Chain F, Crystal Structure Of Human Auh Protein, An Rna-Binding
Homologue Of Enoyl-Coa Hydratase
pdb|2ZQQ|A Chain A, Crystal Structure Of Human Auh (3-Methylglutaconyl-Coa
Hydratase) Mixed With (Auuu)24a Rna
pdb|2ZQQ|B Chain B, Crystal Structure Of Human Auh (3-Methylglutaconyl-Coa
Hydratase) Mixed With (Auuu)24a Rna
pdb|2ZQQ|C Chain C, Crystal Structure Of Human Auh (3-Methylglutaconyl-Coa
Hydratase) Mixed With (Auuu)24a Rna
pdb|2ZQQ|D Chain D, Crystal Structure Of Human Auh (3-Methylglutaconyl-Coa
Hydratase) Mixed With (Auuu)24a Rna
pdb|2ZQQ|E Chain E, Crystal Structure Of Human Auh (3-Methylglutaconyl-Coa
Hydratase) Mixed With (Auuu)24a Rna
pdb|2ZQQ|F Chain F, Crystal Structure Of Human Auh (3-Methylglutaconyl-Coa
Hydratase) Mixed With (Auuu)24a Rna
pdb|2ZQR|A Chain A, Crystal Structure Of Auh Without Rna
pdb|2ZQR|B Chain B, Crystal Structure Of Auh Without Rna
pdb|2ZQR|C Chain C, Crystal Structure Of Auh Without Rna
pdb|2ZQR|D Chain D, Crystal Structure Of Auh Without Rna
pdb|2ZQR|E Chain E, Crystal Structure Of Auh Without Rna
pdb|2ZQR|F Chain F, Crystal Structure Of Auh Without Rna
Length = 272
Score = 26.2 bits (56), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 4/57 (7%)
Query: 15 GLVNHVVEEGE----LLKKAHAVAEAMIKNNQDLVLRYKAVINDGLKLDLGHALALE 67
GL++HV+E+ + +KA +A + + K IN G+++DL LA+E
Sbjct: 185 GLISHVLEQNQEGDAAYRKALDLAREFLPQGPVAMRVAKLAINQGMEVDLVTGLAIE 241
>pdb|2LBP|A Chain A, Structure Of The L-Leucine-Binding Protein Refined At
2.4 Angstroms Resolution And Comparison With The
Leu(Slash) Ile(Slash)val-Binding Protein Structure
Length = 346
Score = 25.8 bits (55), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 51 VINDGLKLDLGHALALEKERAHDYY 75
++NDG+K +GH + + A D Y
Sbjct: 65 IVNDGIKYVIGHLCSSSTQPASDIY 89
>pdb|1USG|A Chain A, L-Leucine-Binding Protein, Apo Form
pdb|1USK|A Chain A, L-Leucine-Binding Protein With Leucine Bound
pdb|1USK|B Chain B, L-Leucine-Binding Protein With Leucine Bound
pdb|1USK|C Chain C, L-Leucine-Binding Protein With Leucine Bound
pdb|1USK|D Chain D, L-Leucine-Binding Protein With Leucine Bound
pdb|1USI|A Chain A, L-Leucine-Binding Protein With Phenylalanine Bound
pdb|1USI|C Chain C, L-Leucine-Binding Protein With Phenylalanine Bound
Length = 346
Score = 25.8 bits (55), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 51 VINDGLKLDLGHALALEKERAHDYY 75
++NDG+K +GH + + A D Y
Sbjct: 65 IVNDGIKYVIGHLCSSSTQPASDIY 89
>pdb|3HRX|A Chain A, Crystal Structure Of Phenylacetic Acid Degradation Protein
Paag
pdb|3HRX|B Chain B, Crystal Structure Of Phenylacetic Acid Degradation Protein
Paag
pdb|3HRX|C Chain C, Crystal Structure Of Phenylacetic Acid Degradation Protein
Paag
pdb|3HRX|D Chain D, Crystal Structure Of Phenylacetic Acid Degradation Protein
Paag
pdb|3HRX|E Chain E, Crystal Structure Of Phenylacetic Acid Degradation Protein
Paag
pdb|3HRX|F Chain F, Crystal Structure Of Phenylacetic Acid Degradation Protein
Paag
Length = 254
Score = 25.4 bits (54), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 35/62 (56%)
Query: 6 ITAEQGERWGLVNHVVEEGELLKKAHAVAEAMIKNNQDLVLRYKAVINDGLKLDLGHALA 65
++AE+ GLV+ VV +L+++A ++A+ + + K ++ + +L L ALA
Sbjct: 162 LSAEEALALGLVHRVVPAEKLMEEALSLAKELAQGPTRAYALTKKLLLETYRLSLTEALA 221
Query: 66 LE 67
LE
Sbjct: 222 LE 223
>pdb|3QI3|A Chain A, Crystal Structure Of Pde9a(Q453e) In Complex With
Inhibitor Bay73-6691
pdb|3QI3|B Chain B, Crystal Structure Of Pde9a(Q453e) In Complex With
Inhibitor Bay73-6691
pdb|3QI4|A Chain A, Crystal Structure Of Pde9a(Q453e) In Complex With Ibmx
pdb|3QI4|B Chain B, Crystal Structure Of Pde9a(Q453e) In Complex With Ibmx
Length = 533
Score = 25.4 bits (54), Expect = 9.1, Method: Composition-based stats.
Identities = 27/94 (28%), Positives = 43/94 (45%), Gaps = 17/94 (18%)
Query: 5 PITAEQ-GERWGLVNHVVEE-GELLKKAHAVAEAMIKNNQDLVLRYKAVINDGLKLDLGH 62
P+ +Q ER L+ V+ + E +A + E + L + K V +GLK+
Sbjct: 80 PVAIKQLSEREELIQSVLAQVAEQFSRAFKINELKAEVANHLAVLEKRVELEGLKV---- 135
Query: 63 ALALEKERAHDYYNGMTKEQFKKMQEFIAARSSK 96
+ +EK K KKM+E +AARSS+
Sbjct: 136 -VEIEK----------CKSDIKKMREELAARSSR 158
>pdb|3L3S|A Chain A, Crystal Structure Of An Enoyl-Coa HydrotaseISOMERASE
FAMILY Protein From Silicibacter Pomeroyi
pdb|3L3S|B Chain B, Crystal Structure Of An Enoyl-Coa HydrotaseISOMERASE
FAMILY Protein From Silicibacter Pomeroyi
pdb|3L3S|C Chain C, Crystal Structure Of An Enoyl-Coa HydrotaseISOMERASE
FAMILY Protein From Silicibacter Pomeroyi
pdb|3L3S|D Chain D, Crystal Structure Of An Enoyl-Coa HydrotaseISOMERASE
FAMILY Protein From Silicibacter Pomeroyi
pdb|3L3S|E Chain E, Crystal Structure Of An Enoyl-Coa HydrotaseISOMERASE
FAMILY Protein From Silicibacter Pomeroyi
pdb|3L3S|F Chain F, Crystal Structure Of An Enoyl-Coa HydrotaseISOMERASE
FAMILY Protein From Silicibacter Pomeroyi
pdb|3L3S|G Chain G, Crystal Structure Of An Enoyl-Coa HydrotaseISOMERASE
FAMILY Protein From Silicibacter Pomeroyi
pdb|3L3S|H Chain H, Crystal Structure Of An Enoyl-Coa HydrotaseISOMERASE
FAMILY Protein From Silicibacter Pomeroyi
pdb|3L3S|I Chain I, Crystal Structure Of An Enoyl-Coa HydrotaseISOMERASE
FAMILY Protein From Silicibacter Pomeroyi
pdb|3L3S|J Chain J, Crystal Structure Of An Enoyl-Coa HydrotaseISOMERASE
FAMILY Protein From Silicibacter Pomeroyi
pdb|3L3S|K Chain K, Crystal Structure Of An Enoyl-Coa HydrotaseISOMERASE
FAMILY Protein From Silicibacter Pomeroyi
pdb|3L3S|L Chain L, Crystal Structure Of An Enoyl-Coa HydrotaseISOMERASE
FAMILY Protein From Silicibacter Pomeroyi
Length = 263
Score = 25.4 bits (54), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 18/74 (24%), Positives = 31/74 (41%)
Query: 15 GLVNHVVEEGELLKKAHAVAEAMIKNNQDLVLRYKAVINDGLKLDLGHALALEKERAHDY 74
GL+N ++ E L +A A+ NQ + R +N L+L L A AL ++
Sbjct: 183 GLINRILPEAALATHVADLAGALAARNQAPLRRGLETLNRHLELPLEQAYALATPVXVEH 242
Query: 75 YNGMTKEQFKKMQE 88
+ + + E
Sbjct: 243 FXDPGRRHLDWIDE 256
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.129 0.354
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,867,169
Number of Sequences: 62578
Number of extensions: 100787
Number of successful extensions: 234
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 207
Number of HSP's gapped (non-prelim): 30
length of query: 102
length of database: 14,973,337
effective HSP length: 67
effective length of query: 35
effective length of database: 10,780,611
effective search space: 377321385
effective search space used: 377321385
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 45 (21.9 bits)