BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 034181
(102 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P52046|CRT_CLOAB 3-hydroxybutyryl-CoA dehydratase OS=Clostridium acetobutylicum
(strain ATCC 824 / DSM 792 / JCM 1419 / LMG 5710 / VKM
B-1787) GN=crt PE=3 SV=1
Length = 261
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 47/93 (50%), Gaps = 2/93 (2%)
Query: 1 MAATPITAEQGERWGLVNHVVEEGELLKKAHAVAEAMIKNNQDLVLRYKAVINDGLKLDL 60
A I A++ R GLVN VVE EL+ A +A ++ N V K IN G++ D+
Sbjct: 163 FTAQNIKADEALRIGLVNKVVEPSELMNTAKEIANKIVSNAPVAVKLSKQAINRGMQCDI 222
Query: 61 GHALALEKERAHDYYNGMTKEQFKKMQEFIAAR 93
ALA E E + ++ T++Q M FI R
Sbjct: 223 DTALAFESEAFGECFS--TEDQKDAMTAFIEKR 253
>sp|O34893|YNGF_BACSU Putative enoyl-CoA hydratase/isomerase YngF OS=Bacillus subtilis
(strain 168) GN=yngF PE=3 SV=1
Length = 260
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 44/84 (52%), Gaps = 2/84 (2%)
Query: 6 ITAEQGERWGLVNHVVEEGELLKKAHAVAEAMIKNNQDLVLRYKAVINDGLKLDLGHALA 65
+TA + + GLV HV +L+ KA +A A+ N V + K IN GL+ DL LA
Sbjct: 168 VTAHEAKEIGLVEHVTAPCDLMPKAEELAAAISANGPIAVRQAKFAINKGLETDLATGLA 227
Query: 66 LEKERAHDYYNGMTKEQFKKMQEF 89
+E++ TK++ + +Q F
Sbjct: 228 IEQKAYEQTIP--TKDRREGLQAF 249
>sp|Q1ZXF1|ECHM_DICDI Probable enoyl-CoA hydratase, mitochondrial OS=Dictyostelium
discoideum GN=echs1 PE=3 SV=1
Length = 277
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 44/89 (49%), Gaps = 2/89 (2%)
Query: 6 ITAEQGERWGLVNHVVEEGELLKKAHAVAEAMIKNNQDLVLRYKAVINDGLKLDLGHALA 65
+TA + E+ GLV+ VV ELL +A +AE + +Q V K +N +L L +
Sbjct: 185 LTAVEAEKAGLVSKVVPVEELLTEATKMAEKIASYSQLTVAMAKEAVNASYELTLQEGIR 244
Query: 66 LEKERAHDYYNGMTKEQFKKMQEFIAARS 94
E+ H + T +Q + M F+ R+
Sbjct: 245 FERRMFHSTFG--THDQKEGMNAFVEKRT 271
>sp|O07137|ECHA8_MYCLE Probable enoyl-CoA hydratase echA8 OS=Mycobacterium leprae (strain
TN) GN=echA8 PE=3 SV=1
Length = 257
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 2/91 (2%)
Query: 6 ITAEQGERWGLVNHVVEEGELLKKAHAVAEAMIKNNQDLVLRYKAVINDGLKLDLGHALA 65
I A + ER GLV+ VV +LL +A AVA + + ++ K +N + L L
Sbjct: 165 IDAAEAERSGLVSRVVLADDLLPEAKAVATTISQMSRSATRMAKEAVNRSFESTLAEGLL 224
Query: 66 LEKERAHDYYNGMTKEQFKKMQEFIAARSSK 96
E+ H + +T +Q + M FI R+ +
Sbjct: 225 HERRLFHSTF--VTDDQSEGMAAFIEKRAPQ 253
>sp|P45361|CRT_CLODI 3-hydroxybutyryl-CoA dehydratase (Fragment) OS=Clostridium
difficile GN=crt PE=3 SV=1
Length = 155
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 46/85 (54%), Gaps = 4/85 (4%)
Query: 6 ITAEQGERWGLVNHVVEEGELLKKAHAVAEAMIKNNQDLVLRY-KAVINDGLKLDLGHAL 64
I A++ E+ GLVN VVE L+++ +A+ + KN Q L +RY K I G + D+ +
Sbjct: 73 IKADEAEKIGLVNRVVEPDILIEEVEKLAKIIAKNAQ-LAVRYSKEAIQLGAQTDINTGI 131
Query: 65 ALEKERAHDYYNGMTKEQFKKMQEF 89
+E ++ TK+Q + + F
Sbjct: 132 DIESNLFGLCFS--TKDQKEGIVSF 154
>sp|Q8Z9L5|CAID_SALTI Carnitinyl-CoA dehydratase OS=Salmonella typhi GN=caiD PE=3 SV=3
Length = 261
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 25/35 (71%)
Query: 6 ITAEQGERWGLVNHVVEEGELLKKAHAVAEAMIKN 40
++AE+ RWG+VN VV + EL++ A +A+ ++ +
Sbjct: 165 MSAEEALRWGIVNRVVSQSELMESARELAQQLVNS 199
>sp|A4YI89|HPCD_METS5 3-hydroxypropionyl-coenzyme A dehydratase OS=Metallosphaera sedula
(strain ATCC 51363 / DSM 5348) GN=Msed_2001 PE=1 SV=1
Length = 259
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 33/67 (49%)
Query: 1 MAATPITAEQGERWGLVNHVVEEGELLKKAHAVAEAMIKNNQDLVLRYKAVINDGLKLDL 60
M I + E++GLVN VV L ++ +AE + K + + K V+N GL L
Sbjct: 162 MTGDRIPGKDAEKYGLVNRVVPLANLEQETRKLAEKIAKKSPISLALIKEVVNRGLDSPL 221
Query: 61 GHALALE 67
LALE
Sbjct: 222 LSGLALE 228
>sp|A9MR28|CAID_SALAR Carnitinyl-CoA dehydratase OS=Salmonella arizonae (strain ATCC
BAA-731 / CDC346-86 / RSK2980) GN=caiD PE=3 SV=1
Length = 261
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 23/35 (65%)
Query: 6 ITAEQGERWGLVNHVVEEGELLKKAHAVAEAMIKN 40
+TAE+ RWG+VN VV ELL A +A ++++
Sbjct: 165 MTAEEALRWGVVNRVVSPHELLDSARELARQLVQS 199
>sp|B5BL54|CAID_SALPK Carnitinyl-CoA dehydratase OS=Salmonella paratyphi A (strain
AKU_12601) GN=caiD PE=3 SV=1
Length = 261
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 25/40 (62%)
Query: 1 MAATPITAEQGERWGLVNHVVEEGELLKKAHAVAEAMIKN 40
M ++AE+ RWG+VN VV + EL+ A +A+ ++ +
Sbjct: 160 MTGRRMSAEEALRWGIVNRVVSQSELMDSARELAQQLVNS 199
>sp|C0Q4L2|CAID_SALPC Carnitinyl-CoA dehydratase OS=Salmonella paratyphi C (strain
RKS4594) GN=caiD PE=3 SV=1
Length = 261
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 25/40 (62%)
Query: 1 MAATPITAEQGERWGLVNHVVEEGELLKKAHAVAEAMIKN 40
M ++AE+ RWG+VN VV + EL+ A +A+ ++ +
Sbjct: 160 MTGRRMSAEEALRWGIVNRVVSQSELMDSARELAQQLVNS 199
>sp|Q5PIL1|CAID_SALPA Carnitinyl-CoA dehydratase OS=Salmonella paratyphi A (strain ATCC
9150 / SARB42) GN=caiD PE=3 SV=1
Length = 261
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 25/40 (62%)
Query: 1 MAATPITAEQGERWGLVNHVVEEGELLKKAHAVAEAMIKN 40
M ++AE+ RWG+VN VV + EL+ A +A+ ++ +
Sbjct: 160 MTGRRMSAEEALRWGIVNRVVSQSELMDSARELAQQLVNS 199
>sp|Q57TJ1|CAID_SALCH Carnitinyl-CoA dehydratase OS=Salmonella choleraesuis (strain
SC-B67) GN=caiD PE=3 SV=1
Length = 261
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 25/40 (62%)
Query: 1 MAATPITAEQGERWGLVNHVVEEGELLKKAHAVAEAMIKN 40
M ++AE+ RWG+VN VV + EL+ A +A+ ++ +
Sbjct: 160 MTGRRMSAEEALRWGIVNRVVSQSELMDSARELAQQLVNS 199
>sp|B5F749|CAID_SALA4 Carnitinyl-CoA dehydratase OS=Salmonella agona (strain SL483)
GN=caiD PE=3 SV=1
Length = 261
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 25/40 (62%)
Query: 1 MAATPITAEQGERWGLVNHVVEEGELLKKAHAVAEAMIKN 40
M ++AE+ RWG+VN VV + EL+ A +A+ ++ +
Sbjct: 160 MTGRRMSAEEALRWGIVNRVVSQSELMDSARELAQQLVNS 199
>sp|B4T6J5|CAID_SALNS Carnitinyl-CoA dehydratase OS=Salmonella newport (strain SL254)
GN=caiD PE=3 SV=1
Length = 261
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 25/35 (71%)
Query: 6 ITAEQGERWGLVNHVVEEGELLKKAHAVAEAMIKN 40
++AE+ RWG+VN VV + EL++ A +A+ ++ +
Sbjct: 165 MSAEEALRWGVVNRVVSQSELMESARELAQQLVNS 199
>sp|Q8ZRX5|CAID_SALTY Carnitinyl-CoA dehydratase OS=Salmonella typhimurium (strain LT2 /
SGSC1412 / ATCC 700720) GN=caiD PE=3 SV=3
Length = 261
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 26/40 (65%)
Query: 1 MAATPITAEQGERWGLVNHVVEEGELLKKAHAVAEAMIKN 40
M ++AE+ RWG+VN VV + EL++ A +A+ ++ +
Sbjct: 160 MTGRRMSAEEALRWGVVNRVVSQSELMESARELAQQLVNS 199
>sp|B4TWR3|CAID_SALSV Carnitinyl-CoA dehydratase OS=Salmonella schwarzengrund (strain
CVM19633) GN=caiD PE=3 SV=1
Length = 261
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 26/40 (65%)
Query: 1 MAATPITAEQGERWGLVNHVVEEGELLKKAHAVAEAMIKN 40
M ++AE+ RWG+VN VV + EL++ A +A+ ++ +
Sbjct: 160 MTGRRMSAEEALRWGVVNRVVSQSELMESARELAQQLVNS 199
>sp|B4TIG9|CAID_SALHS Carnitinyl-CoA dehydratase OS=Salmonella heidelberg (strain SL476)
GN=caiD PE=3 SV=1
Length = 261
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 26/40 (65%)
Query: 1 MAATPITAEQGERWGLVNHVVEEGELLKKAHAVAEAMIKN 40
M ++AE+ RWG+VN VV + EL++ A +A+ ++ +
Sbjct: 160 MTGRRMSAEEALRWGVVNRVVSQSELMESARELAQQLVNS 199
>sp|B5RGA4|CAID_SALG2 Carnitinyl-CoA dehydratase OS=Salmonella gallinarum (strain 287/91
/ NCTC 13346) GN=caiD PE=3 SV=1
Length = 261
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 25/40 (62%)
Query: 1 MAATPITAEQGERWGLVNHVVEEGELLKKAHAVAEAMIKN 40
M ++AE+ RWG+VN VV + EL+ A +A+ ++ +
Sbjct: 160 MTGRRMSAEEALRWGVVNRVVSQSELMDSARELAQQLVNS 199
>sp|B5R1Q9|CAID_SALEP Carnitinyl-CoA dehydratase OS=Salmonella enteritidis PT4 (strain
P125109) GN=caiD PE=3 SV=1
Length = 261
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 25/40 (62%)
Query: 1 MAATPITAEQGERWGLVNHVVEEGELLKKAHAVAEAMIKN 40
M ++AE+ RWG+VN VV + EL+ A +A+ ++ +
Sbjct: 160 MTGRRMSAEEALRWGVVNRVVSQSELMDSARELAQQLVNS 199
>sp|A9MYJ5|CAID_SALPB Carnitinyl-CoA dehydratase OS=Salmonella paratyphi B (strain ATCC
BAA-1250 / SPB7) GN=caiD PE=3 SV=1
Length = 261
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 25/40 (62%)
Query: 1 MAATPITAEQGERWGLVNHVVEEGELLKKAHAVAEAMIKN 40
M ++AE+ RWG+VN VV + EL+ A +A+ ++ +
Sbjct: 160 MTGRRMSAEEALRWGVVNRVVSQSELMDSARELAQQLVNS 199
>sp|B5FHG4|CAID_SALDC Carnitinyl-CoA dehydratase OS=Salmonella dublin (strain
CT_02021853) GN=caiD PE=3 SV=1
Length = 261
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 25/40 (62%)
Query: 1 MAATPITAEQGERWGLVNHVVEEGELLKKAHAVAEAMIKN 40
M ++AE+ RWG+VN VV + EL+ A +A+ ++ +
Sbjct: 160 MTGRRMSAEEALRWGVVNRVVSQSELMDSARELAQQLVNS 199
>sp|Q2TBT3|ECHD2_BOVIN Enoyl-CoA hydratase domain-containing protein 2, mitochondrial
OS=Bos taurus GN=ECHDC2 PE=2 SV=1
Length = 296
Score = 33.5 bits (75), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 44/95 (46%), Gaps = 10/95 (10%)
Query: 6 ITAEQGERWGLVNHVV---EEGE-LLKKAHAVAEAMIKNNQDLVLRYKAVINDGLKLDLG 61
++ Q + GLVNH V EEG +A A+A+ ++ V K I+ G+++D+
Sbjct: 200 LSGAQAQALGLVNHAVAQNEEGNAAYHRARALAQEILPQAPIAVRLSKVAIDRGIEVDIA 259
Query: 62 HALALE------KERAHDYYNGMTKEQFKKMQEFI 90
+A+E D GM + K++ F+
Sbjct: 260 SGMAIEGICYAQNIPTRDRLEGMAAFREKRLPRFV 294
>sp|Q8XA35|CAID_ECO57 Carnitinyl-CoA dehydratase OS=Escherichia coli O157:H7 GN=caiD PE=3
SV=3
Length = 261
Score = 33.5 bits (75), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 22/33 (66%)
Query: 8 AEQGERWGLVNHVVEEGELLKKAHAVAEAMIKN 40
AE+ RWG+VN VV + EL+ A +A+ ++ +
Sbjct: 167 AEEALRWGIVNRVVSQAELMDNARELAQQLVNS 199
>sp|P59395|CAID_SHIFL Carnitinyl-CoA dehydratase OS=Shigella flexneri GN=caiD PE=3 SV=2
Length = 261
Score = 33.5 bits (75), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 22/33 (66%)
Query: 8 AEQGERWGLVNHVVEEGELLKKAHAVAEAMIKN 40
AE+ RWG+VN VV + EL+ A +A+ ++ +
Sbjct: 167 AEEALRWGIVNRVVSQAELMDNARELAQQLVNS 199
>sp|P31551|CAID_ECOLI Carnitinyl-CoA dehydratase OS=Escherichia coli (strain K12) GN=caiD
PE=1 SV=4
Length = 261
Score = 33.5 bits (75), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 22/33 (66%)
Query: 8 AEQGERWGLVNHVVEEGELLKKAHAVAEAMIKN 40
AE+ RWG+VN VV + EL+ A +A+ ++ +
Sbjct: 167 AEEALRWGIVNRVVSQAELMDNARELAQQLVNS 199
>sp|B1IRE0|CAID_ECOLC Carnitinyl-CoA dehydratase OS=Escherichia coli (strain ATCC 8739 /
DSM 1576 / Crooks) GN=caiD PE=3 SV=1
Length = 261
Score = 33.5 bits (75), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 22/33 (66%)
Query: 8 AEQGERWGLVNHVVEEGELLKKAHAVAEAMIKN 40
AE+ RWG+VN VV + EL+ A +A+ ++ +
Sbjct: 167 AEEALRWGIVNRVVSQAELMDNARELAQQLVNS 199
>sp|B1LFW9|CAID_ECOSM Carnitinyl-CoA dehydratase OS=Escherichia coli (strain SMS-3-5 /
SECEC) GN=caiD PE=3 SV=1
Length = 261
Score = 33.1 bits (74), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 22/33 (66%)
Query: 8 AEQGERWGLVNHVVEEGELLKKAHAVAEAMIKN 40
AE+ RWG+VN VV + EL+ A +A+ ++ +
Sbjct: 167 AEEALRWGVVNRVVSQAELMDNARELAQQLVNS 199
>sp|Q8FLA6|CAID_ECOL6 Carnitinyl-CoA dehydratase OS=Escherichia coli O6:H1 (strain CFT073
/ ATCC 700928 / UPEC) GN=caiD PE=3 SV=3
Length = 261
Score = 33.1 bits (74), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 22/33 (66%)
Query: 8 AEQGERWGLVNHVVEEGELLKKAHAVAEAMIKN 40
AE+ RWG+VN VV + EL+ A +A+ ++ +
Sbjct: 167 AEEALRWGVVNRVVSQAELMDNARELAQQLVNS 199
>sp|Q0TLV3|CAID_ECOL5 Carnitinyl-CoA dehydratase OS=Escherichia coli O6:K15:H31 (strain
536 / UPEC) GN=caiD PE=3 SV=1
Length = 261
Score = 33.1 bits (74), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 22/33 (66%)
Query: 8 AEQGERWGLVNHVVEEGELLKKAHAVAEAMIKN 40
AE+ RWG+VN VV + EL+ A +A+ ++ +
Sbjct: 167 AEEALRWGVVNRVVSQAELMDNARELAQQLVNS 199
>sp|P52045|SCPB_ECOLI Methylmalonyl-CoA decarboxylase OS=Escherichia coli (strain K12)
GN=scpB PE=1 SV=1
Length = 261
Score = 32.3 bits (72), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 25/39 (64%), Gaps = 4/39 (10%)
Query: 1 MAATPITAEQGERWGLVNHVVEEGEL----LKKAHAVAE 35
A+PITA++ G++NHVVE EL L+ AH ++E
Sbjct: 162 FTASPITAQRALAVGILNHVVEVEELEDFTLQMAHHISE 200
>sp|Q3MIE0|ECHD3_RAT Enoyl-CoA hydratase domain-containing protein 3, mitochondrial
OS=Rattus norvegicus GN=Echdc3 PE=2 SV=1
Length = 300
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 45/89 (50%), Gaps = 2/89 (2%)
Query: 5 PITAEQGERWGLVNHVVEEGELLKKAHAVAEAMIKNNQDLVLRYKAVINDGLKLDLGHAL 64
PI+A++ R GL++ VV E +L ++A +A+ + ++ +V KA L DL A
Sbjct: 208 PISAQEALRHGLISKVVPEEQLEEEATRIAKKIASLSRSVVALGKATFYKQLPQDLSTAY 267
Query: 65 ALEKERAHDYYNGMTKEQFKKMQEFIAAR 93
L + D N K+ + ++ FI R
Sbjct: 268 FLASQAMVD--NLTLKDGQEGIEAFIQKR 294
>sp|Q31IC8|RLMKL_THICR Ribosomal RNA large subunit methyltransferase K/L OS=Thiomicrospira
crunogena (strain XCL-2) GN=rlmL PE=3 SV=1
Length = 734
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 9/80 (11%)
Query: 6 ITAEQGERWG-----LVNHVVEEGELLKKAHAVAEAMIKNNQDL---VLRYKAVINDGLK 57
+ EQG +WG L+ GE L + V + +K + L + +KA I
Sbjct: 294 MAVEQGRKWGDWSPGLIVCNPPYGERLGEEETVKQIYLKLGEYLKAEFIHWKAAILT-CH 352
Query: 58 LDLGHALALEKERAHDYYNG 77
+LG L ++ +R+HD++NG
Sbjct: 353 TELGMFLGIKAKRSHDFFNG 372
>sp|Q5ZY69|UPPS_LEGPH Ditrans,polycis-undecaprenyl-diphosphate synthase
((2E,6E)-farnesyl-diphosphate specific) OS=Legionella
pneumophila subsp. pneumophila (strain Philadelphia 1 /
ATCC 33152 / DSM 7513) GN=uppS PE=3 SV=1
Length = 238
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 8/66 (12%)
Query: 24 GELLKKAHAVAEAMIKNNQDLVLRYKAVINDGLKLDLGHA------LALEKERAHDYYNG 77
++L+K AEA+ KNNQ L+L V+N G K D+ A L+ + A+D N
Sbjct: 105 SQILQKQMCDAEALTKNNQQLIL--NVVVNYGGKWDIVTAARKLIRTVLDGKLAYDEINE 162
Query: 78 MTKEQF 83
QF
Sbjct: 163 AVFAQF 168
>sp|B2VF42|ZAPA_ERWT9 Cell division protein ZapA OS=Erwinia tasmaniensis (strain DSM
17950 / Et1/99) GN=zapA PE=3 SV=1
Length = 109
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 47/94 (50%), Gaps = 8/94 (8%)
Query: 1 MAATPITAEQGERWGLVNHVVEEGELLKKAHAVAEAMIKNNQDLVLRYKAVINDGL---- 56
M+A P+ + R VN E+ + L A AE + + QDL +R + + L
Sbjct: 1 MSAQPVDLQIFGRSLRVNCPPEQQDALNLA---AEDLNQRLQDLKVRTRVTNTEQLVFIA 57
Query: 57 KLDLGHALALEKERAHDYYNGMTKEQFKKMQEFI 90
L++ H LA EK + DY + M +++ + +Q+ I
Sbjct: 58 ALNICHELAQEKSKTRDYASNM-EQRIRMLQQTI 90
>sp|Q5WZ40|UPPS_LEGPL Ditrans,polycis-undecaprenyl-diphosphate synthase
((2E,6E)-farnesyl-diphosphate specific) OS=Legionella
pneumophila (strain Lens) GN=uppS PE=3 SV=1
Length = 238
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 8/66 (12%)
Query: 24 GELLKKAHAVAEAMIKNNQDLVLRYKAVINDGLKLDLGHA------LALEKERAHDYYNG 77
++L+K + AEA+ KNNQ L+L V+N G K D+ A L+ + A+D N
Sbjct: 105 SQVLQKQMSDAEALTKNNQQLIL--NVVVNYGGKWDIVTAARKLIRTVLDGKLAYDEINE 162
Query: 78 MTKEQF 83
QF
Sbjct: 163 AVFAQF 168
>sp|Q3TLP5|ECHD2_MOUSE Enoyl-CoA hydratase domain-containing protein 2, mitochondrial
OS=Mus musculus GN=Echdc2 PE=2 SV=2
Length = 296
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 43/95 (45%), Gaps = 10/95 (10%)
Query: 6 ITAEQGERWGLVNHVV---EEGE-LLKKAHAVAEAMIKNNQDLVLRYKAVINDGLKLDLG 61
+ Q GLVNH V EEG +A A+A+ ++ V K I+ G+++D+
Sbjct: 200 LNGAQARELGLVNHAVAQNEEGNAAYHRALALAQEILPQAPIAVRLGKVAIDRGMEVDIA 259
Query: 62 HALALEKE------RAHDYYNGMTKEQFKKMQEFI 90
+A+E+ D GM + K+ +F+
Sbjct: 260 SGMAIEQMCYAQNIPTQDRLEGMAAFREKRAPKFV 294
>sp|Q9WV75|SPON2_RAT Spondin-2 OS=Rattus norvegicus GN=Spon2 PE=1 SV=1
Length = 330
Score = 30.4 bits (67), Expect = 3.1, Method: Composition-based stats.
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 8 AEQGERWGLVNHVVEEGELLKKAHAVAEA 36
AE+GE W L+ + GE L+ HAV A
Sbjct: 97 AERGEAWALMKEIEAAGEKLQSVHAVFSA 125
>sp|Q8BMS2|SPON2_MOUSE Spondin-2 OS=Mus musculus GN=Spon2 PE=1 SV=2
Length = 330
Score = 30.4 bits (67), Expect = 3.1, Method: Composition-based stats.
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 8 AEQGERWGLVNHVVEEGELLKKAHAVAEA 36
AE+GE W L+ + GE L+ HAV A
Sbjct: 97 AERGEAWALMKEIEAAGEKLQSVHAVFSA 125
>sp|A8ALR7|CAID_CITK8 Carnitinyl-CoA dehydratase OS=Citrobacter koseri (strain ATCC
BAA-895 / CDC 4225-83 / SGSC4696) GN=caiD PE=3 SV=1
Length = 261
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 23/40 (57%)
Query: 1 MAATPITAEQGERWGLVNHVVEEGELLKKAHAVAEAMIKN 40
M + AE+ RWG+VN VV + L+ A +A+ ++ +
Sbjct: 160 MTGRRMDAEEALRWGIVNRVVSQQALMDSARELAQQLVNS 199
>sp|P48485|PP15_ARATH Serine/threonine-protein phosphatase PP1 isozyme 5 OS=Arabidopsis
thaliana GN=TOPP5 PE=2 SV=1
Length = 312
Score = 30.4 bits (67), Expect = 3.5, Method: Composition-based stats.
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 30 AHAVAEAMIKNNQDLVLRYKAVINDGLKL 58
A VAE +IKN+ DLV R V+ DG +
Sbjct: 235 ADKVAEFLIKNDMDLVCRAHQVVEDGYEF 263
>sp|P77467|PAAG_ECOLI 1,2-epoxyphenylacetyl-CoA isomerase OS=Escherichia coli (strain
K12) GN=paaG PE=1 SV=1
Length = 262
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 39/90 (43%), Gaps = 6/90 (6%)
Query: 6 ITAEQGERWGLVNHVVEEGELLKKAHAVAEAMIKNNQDLVLRYKAVINDGLKLDLGHALA 65
++AEQ WG++ VV++ L A +A + + K IN L L
Sbjct: 170 LSAEQAHEWGMIWQVVDDETLADTAQQLARHLATQPTFGLGLIKQAINSAETNTLDTQLD 229
Query: 66 LEKE------RAHDYYNGMTKEQFKKMQEF 89
LE++ R+ DY G++ K+ +F
Sbjct: 230 LERDYQRLAGRSADYREGVSAFLAKRSPQF 259
>sp|Q96DC8|ECHD3_HUMAN Enoyl-CoA hydratase domain-containing protein 3, mitochondrial
OS=Homo sapiens GN=ECHDC3 PE=1 SV=2
Length = 303
Score = 30.0 bits (66), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 34/69 (49%)
Query: 5 PITAEQGERWGLVNHVVEEGELLKKAHAVAEAMIKNNQDLVLRYKAVINDGLKLDLGHAL 64
PI+A++ GL++ VV E EL ++ +A + ++ +V KA L DLG A
Sbjct: 208 PISAQEALLHGLLSKVVPEAELQEETMRIARKIASLSRPVVSLGKATFYKQLPQDLGTAY 267
Query: 65 ALEKERAHD 73
L + D
Sbjct: 268 YLTSQAMVD 276
>sp|O56044|CAPSD_RRSVT Major inner capsid protein VP3 OS=Rice ragged stunt virus (isolate
Thailand) PE=3 SV=1
Length = 1173
Score = 30.0 bits (66), Expect = 4.9, Method: Composition-based stats.
Identities = 25/88 (28%), Positives = 37/88 (42%), Gaps = 8/88 (9%)
Query: 12 ERWGLVNHVVEEGELLKKAHAVAEAMIKNNQDLVLRYKAVINDGLKLDLGHALALEKERA 71
E LV + + G+L+ K A + N + LRY V G D+G LA ++R
Sbjct: 640 ETLTLVKDLNQTGQLVSKTLMAGVAKVFNTCKIKLRYHGV---GFGRDIGMPLAYLRDRK 696
Query: 72 ----HDYYNGMTKEQFKKMQEFIAARSS 95
HD Y+G F ++A S
Sbjct: 697 INFYHD-YDGRLDTPFPNQMMLVSASQS 723
>sp|Q920P5|KAD5_MOUSE Adenylate kinase isoenzyme 5 OS=Mus musculus GN=Ak5 PE=2 SV=2
Length = 562
Score = 29.6 bits (65), Expect = 5.7, Method: Composition-based stats.
Identities = 15/63 (23%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
Query: 7 TAEQGERWGLVNHVVEEGELLKKAHAVAEAMIKNNQDLVLRYKAVINDGLKLDLGHALAL 66
+A +W L+ ++ GEL + + E IK + + ++ DG D+ AL+
Sbjct: 173 SASSNRKWSLIAKIITNGELAPQETTITE--IKQKLMQIPDEEGIVIDGFPRDVAQALSF 230
Query: 67 EKE 69
E +
Sbjct: 231 EDQ 233
>sp|Q95PZ0|CSN6_CAEEL COP9 signalosome complex subunit 6 OS=Caenorhabditis elegans
GN=csn-6 PE=1 SV=1
Length = 426
Score = 29.3 bits (64), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 34/61 (55%), Gaps = 12/61 (19%)
Query: 6 ITAEQGERWGLVNHVVE-------EGELLKKAHAVAE----AMIKNNQDLVLRYKAVIND 54
+ +E+ ER G VNH+ + +G+ + K HA A+ +M++N DL++ Y + D
Sbjct: 174 LVSEESERVG-VNHIAKLSTKHGKDGKSVGKKHAEAQDAAMSMLQNRVDLIVAYLEKVQD 232
Query: 55 G 55
G
Sbjct: 233 G 233
>sp|Q2S2L8|CLPP1_SALRD ATP-dependent Clp protease proteolytic subunit 1 OS=Salinibacter
ruber (strain DSM 13855 / M31) GN=clpP1 PE=3 SV=2
Length = 233
Score = 29.3 bits (64), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 22/33 (66%), Gaps = 2/33 (6%)
Query: 6 ITAEQGERWGLVNHVVEEGEL--LKKAHAVAEA 36
++AE+ + +GLV+ V+ EG L LK HA EA
Sbjct: 193 LSAEEAQEYGLVDQVMNEGNLDALKSIHANGEA 225
>sp|O49809|MFPA_BRANA Glyoxysomal fatty acid beta-oxidation multifunctional protein MFP-a
OS=Brassica napus PE=2 SV=2
Length = 725
Score = 29.3 bits (64), Expect = 8.2, Method: Composition-based stats.
Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 7/59 (11%)
Query: 1 MAATPITAEQGERWGLVNHVVEEGELLKKAHAVAEAMIKNNQDLVLRYKAVINDGLKLD 59
+ + P+ AE+G GL++ VV ELL A A D+ R K ++ LK D
Sbjct: 168 LTSKPVKAEEGHSLGLIDAVVPPAELLNAARRWA-------LDIAERRKPWVSSVLKTD 219
>sp|B8G1Y2|RL18_DESHD 50S ribosomal protein L18 OS=Desulfitobacterium hafniense (strain
DCB-2 / DSM 10664) GN=rplR PE=3 SV=1
Length = 122
Score = 28.9 bits (63), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 28/55 (50%)
Query: 48 YKAVINDGLKLDLGHALALEKERAHDYYNGMTKEQFKKMQEFIAARSSKKPSSKL 102
Y VIND L + L A +L+ E G E KK+ E +A R+ +K SK+
Sbjct: 41 YAQVINDELGVTLATASSLDAEFKAAELAGGNVEGAKKVGELVAKRAQEKGVSKV 95
>sp|Q9BUD6|SPON2_HUMAN Spondin-2 OS=Homo sapiens GN=SPON2 PE=1 SV=3
Length = 331
Score = 28.9 bits (63), Expect = 9.3, Method: Composition-based stats.
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 8 AEQGERWGLVNHVVEEGELLKKAHAVAEA 36
AE+GE W L+ + GE L+ H V A
Sbjct: 98 AERGEAWALMKEIEAAGEALQSVHEVFSA 126
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.129 0.354
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,240,782
Number of Sequences: 539616
Number of extensions: 1279859
Number of successful extensions: 3075
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 3034
Number of HSP's gapped (non-prelim): 64
length of query: 102
length of database: 191,569,459
effective HSP length: 71
effective length of query: 31
effective length of database: 153,256,723
effective search space: 4750958413
effective search space used: 4750958413
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 55 (25.8 bits)