BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 034182
(102 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2RHE|A Chain A, Structure Of A Novel Bence-Jones Protein (Rhe) Fragment
At 1.6 Angstroms Resolution
Length = 114
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Query: 19 TRNLTAVANQISEHTAKWMQDVSKKSPMELI--NEVPPIKVEGRIVACEGDSNPAL 72
T + T A I ++ W Q V K+P LI N++ P V R A + ++ +L
Sbjct: 19 TISCTGSATDIGSNSVIWYQQVPGKAPKLLIYYNDLLPSGVSDRFSASKSGTSASL 74
>pdb|2IEX|A Chain A, Crystal Structure Of Dihydroxynapthoic Acid Synthetase
(Gk2873) From Geobacillus Kaustophilus Hta426
pdb|2IEX|B Chain B, Crystal Structure Of Dihydroxynapthoic Acid Synthetase
(Gk2873) From Geobacillus Kaustophilus Hta426
pdb|2IEX|C Chain C, Crystal Structure Of Dihydroxynapthoic Acid Synthetase
(Gk2873) From Geobacillus Kaustophilus Hta426
Length = 272
Score = 26.2 bits (56), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 9/21 (42%), Positives = 14/21 (66%)
Query: 28 QISEHTAKWMQDVSKKSPMEL 48
Q+ E T KW Q++ +KSP +
Sbjct: 196 QLEEETVKWAQEILEKSPTAI 216
>pdb|2A7R|A Chain A, Crystal Structure Of Human Guanosine Monophosphate
Reductase 2 (Gmpr2)
pdb|2A7R|B Chain B, Crystal Structure Of Human Guanosine Monophosphate
Reductase 2 (Gmpr2)
pdb|2A7R|C Chain C, Crystal Structure Of Human Guanosine Monophosphate
Reductase 2 (Gmpr2)
pdb|2A7R|D Chain D, Crystal Structure Of Human Guanosine Monophosphate
Reductase 2 (Gmpr2)
Length = 366
Score = 25.8 bits (55), Expect = 6.3, Method: Composition-based stats.
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 25 VANQISEHTAKWMQDVSKKSPMELI 49
VAN SEH ++++DV K+ P I
Sbjct: 148 VANGYSEHFVEFVKDVRKRFPQHTI 172
>pdb|2BZN|A Chain A, Crystal Structure Of Human Guanosine Monophosphate
Reductase 2 Gmpr2 In Complex With Imp
pdb|2BZN|B Chain B, Crystal Structure Of Human Guanosine Monophosphate
Reductase 2 Gmpr2 In Complex With Imp
pdb|2BZN|C Chain C, Crystal Structure Of Human Guanosine Monophosphate
Reductase 2 Gmpr2 In Complex With Imp
pdb|2BZN|D Chain D, Crystal Structure Of Human Guanosine Monophosphate
Reductase 2 Gmpr2 In Complex With Imp
pdb|2BZN|E Chain E, Crystal Structure Of Human Guanosine Monophosphate
Reductase 2 Gmpr2 In Complex With Imp
pdb|2BZN|F Chain F, Crystal Structure Of Human Guanosine Monophosphate
Reductase 2 Gmpr2 In Complex With Imp
pdb|2BZN|G Chain G, Crystal Structure Of Human Guanosine Monophosphate
Reductase 2 Gmpr2 In Complex With Imp
pdb|2BZN|H Chain H, Crystal Structure Of Human Guanosine Monophosphate
Reductase 2 Gmpr2 In Complex With Imp
pdb|2C6Q|A Chain A, Crystal Structure Of Human Guanosine Monophosphate
Reductase 2 Gmpr2 In Complex With Imp And Nadph
pdb|2C6Q|B Chain B, Crystal Structure Of Human Guanosine Monophosphate
Reductase 2 Gmpr2 In Complex With Imp And Nadph
pdb|2C6Q|C Chain C, Crystal Structure Of Human Guanosine Monophosphate
Reductase 2 Gmpr2 In Complex With Imp And Nadph
pdb|2C6Q|D Chain D, Crystal Structure Of Human Guanosine Monophosphate
Reductase 2 Gmpr2 In Complex With Imp And Nadph
pdb|2C6Q|E Chain E, Crystal Structure Of Human Guanosine Monophosphate
Reductase 2 Gmpr2 In Complex With Imp And Nadph
pdb|2C6Q|F Chain F, Crystal Structure Of Human Guanosine Monophosphate
Reductase 2 Gmpr2 In Complex With Imp And Nadph
pdb|2C6Q|G Chain G, Crystal Structure Of Human Guanosine Monophosphate
Reductase 2 Gmpr2 In Complex With Imp And Nadph
pdb|2C6Q|H Chain H, Crystal Structure Of Human Guanosine Monophosphate
Reductase 2 Gmpr2 In Complex With Imp And Nadph
Length = 351
Score = 25.8 bits (55), Expect = 6.3, Method: Composition-based stats.
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 25 VANQISEHTAKWMQDVSKKSPMELI 49
VAN SEH ++++DV K+ P I
Sbjct: 140 VANGYSEHFVEFVKDVRKRFPQHTI 164
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,765,852
Number of Sequences: 62578
Number of extensions: 91065
Number of successful extensions: 251
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 246
Number of HSP's gapped (non-prelim): 7
length of query: 102
length of database: 14,973,337
effective HSP length: 67
effective length of query: 35
effective length of database: 10,780,611
effective search space: 377321385
effective search space used: 377321385
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)