BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 034182
(102 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9M9M6|NDUS6_ARATH NADH dehydrogenase [ubiquinone] iron-sulfur protein 6,
mitochondrial OS=Arabidopsis thaliana GN=At3g03070 PE=3
SV=1
Length = 110
Score = 170 bits (431), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 81/110 (73%), Positives = 89/110 (80%), Gaps = 8/110 (7%)
Query: 1 MASSLLKILIKSSNLPSTTRNLTAVANQ--------ISEHTAKWMQDVSKKSPMELINEV 52
MAS+LLK LI+S LPS+ RN + Q + HTAKWMQD SKKSPMELI+EV
Sbjct: 1 MASNLLKALIRSQILPSSRRNFSVATTQLGIPTDDLVGNHTAKWMQDRSKKSPMELISEV 60
Query: 53 PPIKVEGRIVACEGDSNPALGHPIEFICLDLKEPAICKYCGLRYVQDHHH 102
PPIKV+GRIVACEGD+NPALGHPIEFICLDL EPAICKYCGLRYVQDHHH
Sbjct: 61 PPIKVDGRIVACEGDTNPALGHPIEFICLDLNEPAICKYCGLRYVQDHHH 110
>sp|Q0MQH5|NDUS6_PONPY NADH dehydrogenase [ubiquinone] iron-sulfur protein 6,
mitochondrial OS=Pongo pygmaeus GN=NDUFS6 PE=2 SV=1
Length = 124
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 42/65 (64%), Gaps = 2/65 (3%)
Query: 38 QDVSKKSPMELINEVPPIKVEGRIVACEGDSNPALGHPIEFICLDLK-EPAICKYCGLRY 96
++V++ ++LI E P +VE R++AC+G ALGHP +I LD + + C YCGL++
Sbjct: 61 KEVNENFAIDLIAEQPVSEVETRVIACDG-GGGALGHPKVYINLDKETKTGTCGYCGLQF 119
Query: 97 VQDHH 101
Q HH
Sbjct: 120 RQHHH 124
>sp|Q0MQH7|NDUS6_PANTR NADH dehydrogenase [ubiquinone] iron-sulfur protein 6,
mitochondrial OS=Pan troglodytes GN=NDUFS6 PE=2 SV=1
Length = 124
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 42/65 (64%), Gaps = 2/65 (3%)
Query: 38 QDVSKKSPMELINEVPPIKVEGRIVACEGDSNPALGHPIEFICLDLK-EPAICKYCGLRY 96
++V++ ++LI E P +VE R++AC+G ALGHP +I LD + + C YCGL++
Sbjct: 61 KEVNENFAIDLIAEQPVSEVETRVIACDGGGG-ALGHPKVYINLDKETKTGTCGYCGLQF 119
Query: 97 VQDHH 101
Q HH
Sbjct: 120 RQHHH 124
>sp|O75380|NDUS6_HUMAN NADH dehydrogenase [ubiquinone] iron-sulfur protein 6,
mitochondrial OS=Homo sapiens GN=NDUFS6 PE=1 SV=1
Length = 124
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 42/65 (64%), Gaps = 2/65 (3%)
Query: 38 QDVSKKSPMELINEVPPIKVEGRIVACEGDSNPALGHPIEFICLDLK-EPAICKYCGLRY 96
++V++ ++LI E P +VE R++AC+G ALGHP +I LD + + C YCGL++
Sbjct: 61 KEVNENFAIDLIAEQPVSEVETRVIACDGGGG-ALGHPKVYINLDKETKTGTCGYCGLQF 119
Query: 97 VQDHH 101
Q HH
Sbjct: 120 RQHHH 124
>sp|P52503|NDUS6_MOUSE NADH dehydrogenase [ubiquinone] iron-sulfur protein 6,
mitochondrial OS=Mus musculus GN=Ndufs6 PE=1 SV=2
Length = 116
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 42/66 (63%), Gaps = 2/66 (3%)
Query: 37 MQDVSKKSPMELINEVPPIKVEGRIVACEGDSNPALGHPIEFICLDLK-EPAICKYCGLR 95
++V++ ++LI + P +VE RI+AC+G ALGHP +I LD + + C YCGL+
Sbjct: 52 QKEVNENFAIDLIAQQPVNEVEHRIIACDGGGG-ALGHPKVYINLDKETKTGTCGYCGLQ 110
Query: 96 YVQDHH 101
+ Q HH
Sbjct: 111 FKQHHH 116
>sp|P52504|NDUS6_RAT NADH dehydrogenase [ubiquinone] iron-sulfur protein 6,
mitochondrial OS=Rattus norvegicus GN=Ndufs6 PE=3 SV=1
Length = 116
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 42/65 (64%), Gaps = 2/65 (3%)
Query: 38 QDVSKKSPMELINEVPPIKVEGRIVACEGDSNPALGHPIEFICLDLK-EPAICKYCGLRY 96
++V++ ++LI + P +V+ RI+AC+G ALGHP +I LD + + C YCGL++
Sbjct: 53 KEVNENFAIDLIAQQPVNEVDRRIIACDG-GGGALGHPKVYINLDKETKTGTCAYCGLQF 111
Query: 97 VQDHH 101
Q HH
Sbjct: 112 KQQHH 116
>sp|P23934|NDUS6_BOVIN NADH dehydrogenase [ubiquinone] iron-sulfur protein 6,
mitochondrial OS=Bos taurus GN=NDUFS6 PE=1 SV=2
Length = 124
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 41/65 (63%), Gaps = 2/65 (3%)
Query: 38 QDVSKKSPMELINEVPPIKVEGRIVACEGDSNPALGHPIEFICLDLK-EPAICKYCGLRY 96
++V++ ++LI E P +V R+++C+G ALGHP +I LD + + C YCGL++
Sbjct: 61 KEVNENFAIDLIAEQPVSQVGSRVISCDGGGG-ALGHPRVYINLDKETKTGTCGYCGLQF 119
Query: 97 VQDHH 101
Q HH
Sbjct: 120 RQQHH 124
>sp|Q0MQH6|NDUS6_GORGO NADH dehydrogenase [ubiquinone] iron-sulfur protein 6,
mitochondrial OS=Gorilla gorilla gorilla GN=NDUFS6 PE=2
SV=1
Length = 124
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 41/65 (63%), Gaps = 2/65 (3%)
Query: 38 QDVSKKSPMELINEVPPIKVEGRIVACEGDSNPALGHPIEFICLDLK-EPAICKYCGLRY 96
++V++ ++LI E P +VE R++AC+G ALGHP +I LD + + C YCGL++
Sbjct: 61 KEVNENFAIDLIAEQPVSEVETRVIACDGGGG-ALGHPKVYINLDKETKTGTCGYCGLQF 119
Query: 97 VQDHH 101
Q H
Sbjct: 120 RQHHR 124
>sp|Q5AUI1|LBSA_EMENI Lactobacillus shifted protein OS=Emericella nidulans (strain FGSC
A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=lbsA
PE=1 SV=1
Length = 213
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Query: 46 MELINEVPPIKVEGRIVACEGDSNPALGHPIEFICLDLKEPAICKYCGLRYVQDHHH 102
+ELI++ P V+ +IV+C+G P LGHP FI D E C YCGL + +HH
Sbjct: 120 IELIHKQPVRWVKDKIVSCDGGGGP-LGHPRIFINTDKPEIVPCGYCGLPFAHEHHR 175
>sp|Q19724|NDUS6_CAEEL Probable NADH dehydrogenase [ubiquinone] iron-sulfur protein 6,
mitochondrial OS=Caenorhabditis elegans GN=nduf-6 PE=3
SV=1
Length = 140
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 38/68 (55%), Gaps = 7/68 (10%)
Query: 39 DVSKKS-----PMELINEVPPIKV-EGRIVACEGDSNPALGHPIEFICLDLKEPAICKYC 92
D+SKKS M LI++ PP + R+V C+G +PALGHP +I LD C YC
Sbjct: 60 DISKKSVNPNVAMHLIDQRPPEDCGDKRVVFCDG-GHPALGHPKVYINLDKPGVHACGYC 118
Query: 93 GLRYVQDH 100
G R+ H
Sbjct: 119 GNRFYNSH 126
>sp|Q4R5X8|NDUS6_MACFA NADH dehydrogenase [ubiquinone] iron-sulfur protein 6,
mitochondrial OS=Macaca fascicularis GN=NDUFS6 PE=2 SV=1
Length = 124
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 41/66 (62%), Gaps = 2/66 (3%)
Query: 37 MQDVSKKSPMELINEVPPIKVEGRIVACEGDSNPALGHPIEFICLDLK-EPAICKYCGLR 95
++V++ ++LI E P +V+ R++AC+G ALGHP +I LD + + C YCGL+
Sbjct: 60 QKEVNENFAIDLIAEQPVSEVQTRVIACDGGGG-ALGHPKVYINLDKETKTGTCGYCGLQ 118
Query: 96 YVQDHH 101
+ Q H
Sbjct: 119 FRQHPH 124
>sp|A7MHT9|RBN_CROS8 Ribonuclease BN OS=Cronobacter sakazakii (strain ATCC BAA-894)
GN=rbn PE=3 SV=1
Length = 304
Score = 32.3 bits (72), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Query: 6 LKILIKSSNLPSTTRNLTA-VANQISEHTAKWMQDVSKKSPMELINEVP-PIKVE 58
L L S+ LPSTTRN+TA V N + + W+ D + + +++ P K+E
Sbjct: 3 LTFLGTSAGLPSTTRNVTAIVLNPQNNRSGLWLFDCGEGTQHQMLRATATPGKIE 57
>sp|Q7NDW3|RNZ_GLOVI Ribonuclease Z OS=Gloeobacter violaceus (strain PCC 7421) GN=rnz
PE=3 SV=1
Length = 317
Score = 32.3 bits (72), Expect = 0.91, Method: Composition-based stats.
Identities = 13/45 (28%), Positives = 28/45 (62%)
Query: 5 LLKILIKSSNLPSTTRNLTAVANQISEHTAKWMQDVSKKSPMELI 49
LL L SS P+ +RN+T++A Q+ + ++ W+ D + + +++
Sbjct: 2 LLTFLGTSSGTPTRSRNVTSIALQLPQRSSLWLFDCGEGTQHQVL 46
>sp|P29505|COX5_DICDI Cytochrome c oxidase subunit 5 OS=Dictyostelium discoideum GN=cxeA
PE=1 SV=3
Length = 120
Score = 29.6 bits (65), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 24/51 (47%), Gaps = 6/51 (11%)
Query: 54 PIKVEG----RIVACEGDSNPALGHPIEFICLDLKEPAICKYCGLRYVQDH 100
P+ VE RIVACEG H I F + K+P IC CG + H
Sbjct: 62 PVIVESIFHSRIVACEGGDGEE--HDILFHTVAEKKPTICLDCGQVFKLKH 110
>sp|Q319D8|RNZ_PROM9 Ribonuclease Z OS=Prochlorococcus marinus (strain MIT 9312)
GN=rnz PE=3 SV=1
Length = 312
Score = 29.6 bits (65), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 23/34 (67%)
Query: 6 LKILIKSSNLPSTTRNLTAVANQISEHTAKWMQD 39
+ L SS +PS TRN++++A ++S+ + W+ D
Sbjct: 3 ITFLGTSSGVPSLTRNVSSLALKLSQSSEVWLFD 36
>sp|A3PEI3|RNZ_PROM0 Ribonuclease Z OS=Prochlorococcus marinus (strain MIT 9301)
GN=rnz PE=3 SV=1
Length = 312
Score = 29.6 bits (65), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 23/34 (67%)
Query: 6 LKILIKSSNLPSTTRNLTAVANQISEHTAKWMQD 39
+ L SS +PS TRN++++A ++S+ + W+ D
Sbjct: 3 ITFLGTSSGVPSLTRNVSSLALKLSQSSEVWLFD 36
>sp|Q9K7E3|THRC_BACHD Threonine synthase OS=Bacillus halodurans (strain ATCC BAA-125 /
DSM 18197 / FERM 7344 / JCM 9153 / C-125) GN=thrC PE=3
SV=1
Length = 354
Score = 29.6 bits (65), Expect = 5.9, Method: Composition-based stats.
Identities = 10/30 (33%), Positives = 20/30 (66%)
Query: 31 EHTAKWMQDVSKKSPMELINEVPPIKVEGR 60
+H ++ +S+K P+ L+N V P ++EG+
Sbjct: 135 DHALDIVRSISEKEPITLVNSVNPYRIEGQ 164
>sp|A8G6G0|RNZ_PROM2 Ribonuclease Z OS=Prochlorococcus marinus (strain MIT 9215)
GN=rnz PE=3 SV=1
Length = 312
Score = 29.3 bits (64), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 22/32 (68%)
Query: 8 ILIKSSNLPSTTRNLTAVANQISEHTAKWMQD 39
L SS +PS TRN++++A ++S+ + W+ D
Sbjct: 5 FLGTSSGVPSLTRNVSSLALKLSQSSEVWLFD 36
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.133 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,380,814
Number of Sequences: 539616
Number of extensions: 1322938
Number of successful extensions: 3237
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 3217
Number of HSP's gapped (non-prelim): 23
length of query: 102
length of database: 191,569,459
effective HSP length: 71
effective length of query: 31
effective length of database: 153,256,723
effective search space: 4750958413
effective search space used: 4750958413
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)