BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 034183
         (102 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1JYM|A Chain A, Crystals Of Peptide Deformylase From Plasmodium Falciparum
           With Ten Subunits Per Asymmetric Unit Reveal Critical
           Characteristics Of The Active Site For Drug Design
 pdb|1JYM|B Chain B, Crystals Of Peptide Deformylase From Plasmodium Falciparum
           With Ten Subunits Per Asymmetric Unit Reveal Critical
           Characteristics Of The Active Site For Drug Design
 pdb|1JYM|C Chain C, Crystals Of Peptide Deformylase From Plasmodium Falciparum
           With Ten Subunits Per Asymmetric Unit Reveal Critical
           Characteristics Of The Active Site For Drug Design
 pdb|1JYM|D Chain D, Crystals Of Peptide Deformylase From Plasmodium Falciparum
           With Ten Subunits Per Asymmetric Unit Reveal Critical
           Characteristics Of The Active Site For Drug Design
 pdb|1JYM|E Chain E, Crystals Of Peptide Deformylase From Plasmodium Falciparum
           With Ten Subunits Per Asymmetric Unit Reveal Critical
           Characteristics Of The Active Site For Drug Design
 pdb|1JYM|F Chain F, Crystals Of Peptide Deformylase From Plasmodium Falciparum
           With Ten Subunits Per Asymmetric Unit Reveal Critical
           Characteristics Of The Active Site For Drug Design
 pdb|1JYM|G Chain G, Crystals Of Peptide Deformylase From Plasmodium Falciparum
           With Ten Subunits Per Asymmetric Unit Reveal Critical
           Characteristics Of The Active Site For Drug Design
 pdb|1JYM|H Chain H, Crystals Of Peptide Deformylase From Plasmodium Falciparum
           With Ten Subunits Per Asymmetric Unit Reveal Critical
           Characteristics Of The Active Site For Drug Design
 pdb|1JYM|I Chain I, Crystals Of Peptide Deformylase From Plasmodium Falciparum
           With Ten Subunits Per Asymmetric Unit Reveal Critical
           Characteristics Of The Active Site For Drug Design
 pdb|1JYM|J Chain J, Crystals Of Peptide Deformylase From Plasmodium Falciparum
           With Ten Subunits Per Asymmetric Unit Reveal Critical
           Characteristics Of The Active Site For Drug Design
          Length = 183

 Score = 28.1 bits (61), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 13/57 (22%)

Query: 51  GSIVATRAEENSRFYGNPSI-------------CASAILLGSLPRPPAAAILYHALS 94
            ++   R EEN R + NPSI             C S  + G + RP   +I Y+ ++
Sbjct: 60  NALYEKRKEENERIFINPSIVEQSLVKLKLIEGCLSFGIEGKVERPSIVSISYYDIN 116


>pdb|3IYP|F Chain F, The Interaction Of Decay-Accelerating Factor With
           Echovirus 7
          Length = 381

 Score = 25.8 bits (55), Expect = 5.7,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 4/53 (7%)

Query: 30  GYAACYTYSCSKG-AFVGCSLEGSIVATRAEENSRFYGNPSICASAILLGSLP 81
           GY    TY+C+KG   +G   E SI  T   +   + G P  C    L   +P
Sbjct: 244 GYRQSVTYACNKGFTMIG---EHSIYCTVNNDEGEWSGPPPECRGKSLTSKVP 293


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.135    0.407 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,585,824
Number of Sequences: 62578
Number of extensions: 85061
Number of successful extensions: 229
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 228
Number of HSP's gapped (non-prelim): 4
length of query: 102
length of database: 14,973,337
effective HSP length: 67
effective length of query: 35
effective length of database: 10,780,611
effective search space: 377321385
effective search space used: 377321385
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)