Query 034183
Match_columns 102
No_of_seqs 108 out of 403
Neff 6.0
Searched_HMMs 46136
Date Fri Mar 29 10:41:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034183.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/034183hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04366 DUF500: Family of unk 100.0 2.1E-32 4.6E-37 189.0 9.7 93 2-96 34-126 (126)
2 COG2930 Uncharacterized conser 100.0 2.3E-30 4.9E-35 191.2 7.7 94 2-96 129-222 (227)
3 KOG1843 Uncharacterized conser 99.8 5.4E-22 1.2E-26 159.1 4.8 99 2-101 121-219 (473)
4 KOG1843 Uncharacterized conser 99.0 4.8E-11 1E-15 96.5 1.2 98 2-100 367-464 (473)
5 PF11950 DUF3467: Protein of u 57.6 10 0.00022 24.6 2.2 23 80-102 63-85 (92)
6 PF13991 BssS: BssS protein fa 43.9 23 0.00049 22.6 2.2 21 82-102 43-63 (73)
7 COG2732 Barstar, RNAse (barnas 43.7 33 0.00071 22.7 3.0 39 62-101 28-83 (91)
8 PF10206 WRW: Mitochondrial F1 39.5 34 0.00074 23.1 2.6 20 62-81 21-40 (104)
9 PHA01082 putative transcriptio 31.5 51 0.0011 23.2 2.5 27 66-93 93-123 (133)
10 PF03130 HEAT_PBS: PBS lyase H 28.5 34 0.00073 16.9 1.0 18 78-95 10-27 (27)
11 TIGR01149 mtrG N5-methyltetrah 27.0 72 0.0016 20.2 2.4 21 81-101 9-29 (70)
12 PF05814 DUF843: Baculovirus p 26.9 66 0.0014 21.0 2.3 37 63-99 43-79 (83)
13 PRK11376 hlyE hemolysin E; Pro 25.4 30 0.00064 27.0 0.6 20 33-57 192-211 (303)
14 TIGR01329 cysta_beta_ly_E cyst 24.9 40 0.00086 26.7 1.2 27 31-57 182-208 (378)
15 PRK09681 putative type II secr 24.8 32 0.0007 26.9 0.7 48 49-98 206-257 (276)
16 PF07040 DUF1326: Protein of u 23.9 83 0.0018 23.0 2.7 58 32-91 24-81 (184)
17 PRK07504 O-succinylhomoserine 22.1 90 0.002 24.9 2.8 65 31-101 201-266 (398)
18 PRK08114 cystathionine beta-ly 21.0 65 0.0014 26.1 1.8 65 31-101 200-264 (395)
19 COG5405 HslV ATP-dependent pro 20.7 2.1E+02 0.0045 21.2 4.1 60 33-98 6-69 (178)
20 PHA01632 hypothetical protein 20.6 1.1E+02 0.0023 18.8 2.2 25 75-99 19-43 (64)
21 PF04210 MtrG: Tetrahydrometha 20.4 1.1E+02 0.0024 19.3 2.3 21 81-101 9-29 (70)
No 1
>PF04366 DUF500: Family of unknown function (DUF500); InterPro: IPR007461 This entry corresponds to proteins having the Ysc84 actin binding domain (YAB). This 184 amino acid domain lies at the N terminus of the Saccharomyces cerevisiae (Baker's yeast) protein Ysc84 (P32793 from SWISSPROT). It is essential for the organisation of the actin cytoskeleton, and interacts with the Arp2/3 complex []. Homologous domains are found across a range of species. In fungi and vertebrates the domain is at the N terminus, while there is an SH3 domain at the C terminus. In plants the domain seems to be at the C terminus and in association with a FYVE domain. Interestingly, the domain is absent in invertebrates. The domain is also found in prokaryotes, where presumable it is also involved in protein binding, perhaps to the prokaryotic homologue of actin [].
Probab=99.98 E-value=2.1e-32 Score=189.05 Aligned_cols=93 Identities=48% Similarity=0.784 Sum_probs=87.3
Q ss_pred eeeecCceeEEeccccccccccccccCCCcccEEEEEcccceeEEEeeeeeEEEechHHHhhccCCCCCChhhhhcCCCC
Q 034183 2 HFSFGAGLSAAAGIVGRAAEVDVRAGVGGYAACYTYSCSKGAFVGCSLEGSIVATRAEENSRFYGNPSICASAILLGSLP 81 (102)
Q Consensus 2 ~~~lG~d~svaaGP~Gr~~~~~~~~~~~~~a~i~sYs~SkGlfaGvsl~Gs~i~~r~d~N~~~Yg~~~vt~~~IL~g~v~ 81 (102)
+++||+|+++++||+|+++++++.+.. ..++||+|++|||+|+|+||+|++|.+|+|+|++|||+ .++++|||.|+++
T Consensus 34 ~~~lG~~~s~a~gp~g~~~~~~~~~~~-~~~~v~~ys~s~Gl~~G~sl~G~~i~~~~~~N~~~YG~-~v~~~~IL~g~~~ 111 (126)
T PF04366_consen 34 KFTLGGDASAAAGPVGRSAEADTDTSD-GSADVYSYSKSKGLFAGVSLEGSKISVRDDANARFYGR-DVTPEDILNGKVP 111 (126)
T ss_pred CEEEeeeeEEEecCcCccccccccccc-ccCceEEEEecCeEEEEEEEcceEEEEChHHHHHHhCC-CCCHHHHhCCCCC
Confidence 689999999999999999999887753 35899999999999999999999999999999999999 6999999999999
Q ss_pred CChHHHHHHHHHHHH
Q 034183 82 RPPAAAILYHALSDL 96 (102)
Q Consensus 82 ~p~~a~~L~~~L~~~ 96 (102)
+||++++||++|+++
T Consensus 112 ~p~~a~~L~~~L~~a 126 (126)
T PF04366_consen 112 PPPEAQPLYEALNKA 126 (126)
T ss_pred CCHHHHHHHHHHHhC
Confidence 999999999999874
No 2
>COG2930 Uncharacterized conserved protein [Function unknown]
Probab=99.96 E-value=2.3e-30 Score=191.19 Aligned_cols=94 Identities=43% Similarity=0.700 Sum_probs=89.0
Q ss_pred eeeecCceeEEeccccccccccccccCCCcccEEEEEcccceeEEEeeeeeEEEechHHHhhccCCCCCChhhhhcCCCC
Q 034183 2 HFSFGAGLSAAAGIVGRAAEVDVRAGVGGYAACYTYSCSKGAFVGCSLEGSIVATRAEENSRFYGNPSICASAILLGSLP 81 (102)
Q Consensus 2 ~~~lG~d~svaaGP~Gr~~~~~~~~~~~~~a~i~sYs~SkGlfaGvsl~Gs~i~~r~d~N~~~Yg~~~vt~~~IL~g~v~ 81 (102)
++|||+|+|||+||+|||+++..+.+.++.+.||+||++||||+|+||||+.|.+|.+.|++|||. ++||++||.|++.
T Consensus 129 ~iTlGg~~SVAagplGrna~aa~d~~~~~~a~v~sys~~kGLfAGvSvEGs~i~~~~eanr~~Y~~-~~t~k~il~grv~ 207 (227)
T COG2930 129 TITLGGNASVAAGPLGRNAEAAADASLGGVAAVFSYSKAKGLFAGVSVEGSAITERREANRKFYGD-NITPKMILSGRVA 207 (227)
T ss_pred cEEecceeEEeeccccccchhccccccCCcceEEEEEecccceeeeeeccceeeehhhhhhHHhcC-CCCHHHhhcCccC
Confidence 589999999999999999998888776677999999999999999999999999999999999999 7999999999999
Q ss_pred CChHHHHHHHHHHHH
Q 034183 82 RPPAAAILYHALSDL 96 (102)
Q Consensus 82 ~p~~a~~L~~~L~~~ 96 (102)
.||.+++|+..|+.-
T Consensus 208 ~ppaad~l~~~l~~~ 222 (227)
T COG2930 208 EPPAADPLARVLNSK 222 (227)
T ss_pred CCCcccHHHHHHHhh
Confidence 999999999999764
No 3
>KOG1843 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.85 E-value=5.4e-22 Score=159.13 Aligned_cols=99 Identities=41% Similarity=0.590 Sum_probs=92.2
Q ss_pred eeeecCceeEEeccccccccccccccCCCcccEEEEEcccceeEEEeeeeeEEEechHHHhhccCCCCCChhhhhcCCCC
Q 034183 2 HFSFGAGLSAAAGIVGRAAEVDVRAGVGGYAACYTYSCSKGAFVGCSLEGSIVATRAEENSRFYGNPSICASAILLGSLP 81 (102)
Q Consensus 2 ~~~lG~d~svaaGP~Gr~~~~~~~~~~~~~a~i~sYs~SkGlfaGvsl~Gs~i~~r~d~N~~~Yg~~~vt~~~IL~g~v~ 81 (102)
.++||++++++|||+||++++......+..+++|.|++++|+|+|+|++|+.|.+|++.|++|||. .++...||.|.++
T Consensus 121 ~itLGgn~svsAgPLgr~aea~a~asl~~~ap~f~yskskglfagvSvegsaI~erR~anR~~yg~-~cra~~ilsg~vp 199 (473)
T KOG1843|consen 121 TITLGGNLSVSAGPLGRNAEAAASASLGGEAPVFLYSKSKGLFAGVSVEGSAIIERREANRKFYGI-FCRAKSILSGLVP 199 (473)
T ss_pred eeeecCcceeccCcccccchhhhhhhhcCcCccccccccccceeeeecccceeeecchhhhhhcCc-cchhhhhhccCCC
Confidence 369999999999999999887666665577999999999999999999999999999999999999 7999999999999
Q ss_pred CChHHHHHHHHHHHHHHhhc
Q 034183 82 RPPAAAILYHALSDLFEKVE 101 (102)
Q Consensus 82 ~p~~a~~L~~~L~~~~~~~~ 101 (102)
+|+.+++|+++|+.-+.++|
T Consensus 200 ~p~a~d~l~RVldS~~~nl~ 219 (473)
T KOG1843|consen 200 VPFAADPLQRVLDSCAFNLE 219 (473)
T ss_pred CCcccCCHHHHHhhHhhccC
Confidence 99999999999999888774
No 4
>KOG1843 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.05 E-value=4.8e-11 Score=96.48 Aligned_cols=98 Identities=42% Similarity=0.584 Sum_probs=90.5
Q ss_pred eeeecCceeEEeccccccccccccccCCCcccEEEEEcccceeEEEeeeeeEEEechHHHhhccCCCCCChhhhhcCCCC
Q 034183 2 HFSFGAGLSAAAGIVGRAAEVDVRAGVGGYAACYTYSCSKGAFVGCSLEGSIVATRAEENSRFYGNPSICASAILLGSLP 81 (102)
Q Consensus 2 ~~~lG~d~svaaGP~Gr~~~~~~~~~~~~~a~i~sYs~SkGlfaGvsl~Gs~i~~r~d~N~~~Yg~~~vt~~~IL~g~v~ 81 (102)
++.+|+..+.++||.||..+++....++..+..++|+.+||.|.|.||++.....+.+.|-+|||.+.....|||. -++
T Consensus 367 h~~~Ga~~s~a~~~s~r~~esdi~a~S~~~~~~~~~s~skgaf~~~Sl~~n~a~a~ysfage~~GDl~f~kgDii~-il~ 445 (473)
T KOG1843|consen 367 HRVRGAGLSAAVGPSGRAVESDIRAGSSGYSKCGTYSASKGAFVGCSLEPNIATALYSFAGEQPGDLSFQKGDIIT-ILK 445 (473)
T ss_pred ccccccccccccCcCccchhhcccccCCcccccccccCCCCcccccccCcceeeeeehhccCCCCCcccccCceEE-Eec
Confidence 5678999999999999999999888777789999999999999999999999999999999999998889999999 789
Q ss_pred CChHHHHHHHHHHHHHHhh
Q 034183 82 RPPAAAILYHALSDLFEKV 100 (102)
Q Consensus 82 ~p~~a~~L~~~L~~~~~~~ 100 (102)
.|+.+.+++..+-...++|
T Consensus 446 ks~s~~dwwtgr~~~~egi 464 (473)
T KOG1843|consen 446 KSDSANDWWTGRGNGYEGI 464 (473)
T ss_pred CCcchhhHHHhhccccccc
Confidence 9999999999998877665
No 5
>PF11950 DUF3467: Protein of unknown function (DUF3467); InterPro: IPR021857 This entry is represented by Bacteriophage 92, 0rf53. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family of proteins are functionally uncharacterised. This protein is found in bacteria, archaea and viruses. Proteins in this family are typically between 101 to 118 amino acids in length.
Probab=57.64 E-value=10 Score=24.63 Aligned_cols=23 Identities=30% Similarity=0.384 Sum_probs=20.0
Q ss_pred CCCChHHHHHHHHHHHHHHhhcC
Q 034183 80 LPRPPAAAILYHALSDLFEKVER 102 (102)
Q Consensus 80 v~~p~~a~~L~~~L~~~~~~~~~ 102 (102)
+=+|..|..|..+|.....+||.
T Consensus 63 imsP~~AKrL~~aL~~~l~~YE~ 85 (92)
T PF11950_consen 63 IMSPQHAKRLLKALQQNLQKYEQ 85 (92)
T ss_pred EeCHHHHHHHHHHHHHHHHHHHH
Confidence 34689999999999999999984
No 6
>PF13991 BssS: BssS protein family
Probab=43.91 E-value=23 Score=22.58 Aligned_cols=21 Identities=24% Similarity=0.221 Sum_probs=18.8
Q ss_pred CChHHHHHHHHHHHHHHhhcC
Q 034183 82 RPPAAAILYHALSDLFEKVER 102 (102)
Q Consensus 82 ~p~~a~~L~~~L~~~~~~~~~ 102 (102)
+|..|+.|+..|.+...+||.
T Consensus 43 T~e~Ar~Li~~L~~~I~kiE~ 63 (73)
T PF13991_consen 43 TTEMARQLISILEAGIDKIES 63 (73)
T ss_pred cHHHHHHHHHHHHHHHHHHHh
Confidence 478999999999999999984
No 7
>COG2732 Barstar, RNAse (barnase) inhibitor [Transcription]
Probab=43.71 E-value=33 Score=22.73 Aligned_cols=39 Identities=23% Similarity=0.390 Sum_probs=27.5
Q ss_pred hhccCCCCCCh-hhhhcCCCCCC----------------hHHHHHHHHHHHHHHhhc
Q 034183 62 SRFYGNPSICA-SAILLGSLPRP----------------PAAAILYHALSDLFEKVE 101 (102)
Q Consensus 62 ~~~Yg~~~vt~-~~IL~g~v~~p----------------~~a~~L~~~L~~~~~~~~ 101 (102)
..|||+ ++.+ .|.|.|.+..| .-+..+..+|.++.+.+|
T Consensus 28 ~~yyg~-nLDaLWD~ltg~v~lPl~iv~k~f~~sk~~l~~~f~~iv~vl~eaeEele 83 (91)
T COG2732 28 ADYYGR-NLDALWDVLTGDVLLPLEIVFKHFGFSKNQLRRRFGAIVLVLEEAEEELE 83 (91)
T ss_pred hHHhcc-cHHHHHHHHhccccCceEEEEeccchhhhHHHHHHHHHHHHHHHHHHHHh
Confidence 358999 6776 89999998765 235566667777666554
No 8
>PF10206 WRW: Mitochondrial F1F0-ATP synthase, subunit f; InterPro: IPR019344 This entry represents small proteins of approximately 110 amino acids, which are highly conserved from nematodes to humans. Some have been annotated in Swiss-Prot as being the f subunit of mitochondrial F1F0-ATP synthase but this could not be confirmed. The sequence has a well-conserved WRW motif. The exact function of the protein is not known.
Probab=39.50 E-value=34 Score=23.13 Aligned_cols=20 Identities=35% Similarity=0.713 Sum_probs=15.1
Q ss_pred hhccCCCCCChhhhhcCCCC
Q 034183 62 SRFYGNPSICASAILLGSLP 81 (102)
Q Consensus 62 ~~~Yg~~~vt~~~IL~g~v~ 81 (102)
.+|||+++..-.|+=.|+++
T Consensus 21 ~ryYGk~Dt~l~dVKLgELp 40 (104)
T PF10206_consen 21 ARYYGKKDTPLMDVKLGELP 40 (104)
T ss_pred hhhcCCCCCchhheecchhH
Confidence 57999987776888666654
No 9
>PHA01082 putative transcription regulator
Probab=31.52 E-value=51 Score=23.19 Aligned_cols=27 Identities=19% Similarity=0.320 Sum_probs=17.4
Q ss_pred CCCCCChhhhhcCC----CCCChHHHHHHHHH
Q 034183 66 GNPSICASAILLGS----LPRPPAAAILYHAL 93 (102)
Q Consensus 66 g~~~vt~~~IL~g~----v~~p~~a~~L~~~L 93 (102)
|+ .|||+|||.|- +..+......-+.|
T Consensus 93 Gq-~VtpQqILtGiALLEIgAe~D~~~~~kiL 123 (133)
T PHA01082 93 GD-RVAPQQLLAAIAILQIQAPDDAMTRSKLL 123 (133)
T ss_pred cC-cccHHHHHHHhHhhhccCcchHHHHHHHH
Confidence 55 69999999983 44455554444444
No 10
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=28.51 E-value=34 Score=16.94 Aligned_cols=18 Identities=39% Similarity=0.565 Sum_probs=13.1
Q ss_pred CCCCCChHHHHHHHHHHH
Q 034183 78 GSLPRPPAAAILYHALSD 95 (102)
Q Consensus 78 g~v~~p~~a~~L~~~L~~ 95 (102)
|+...|....+|+++|+.
T Consensus 10 g~igd~~ai~~L~~~L~d 27 (27)
T PF03130_consen 10 GQIGDPRAIPALIEALED 27 (27)
T ss_dssp GGG-SHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHhcC
Confidence 456667888999998864
No 11
>TIGR01149 mtrG N5-methyltetrahydromethanopterin:coenzyme M methyltransferase subunit G. coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranfersae is membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.
Probab=26.97 E-value=72 Score=20.15 Aligned_cols=21 Identities=29% Similarity=0.346 Sum_probs=18.8
Q ss_pred CCChHHHHHHHHHHHHHHhhc
Q 034183 81 PRPPAAAILYHALSDLFEKVE 101 (102)
Q Consensus 81 ~~p~~a~~L~~~L~~~~~~~~ 101 (102)
.+|.+-..+++-|++..+|+|
T Consensus 9 v~~~d~~~i~~rLd~iEeKVE 29 (70)
T TIGR01149 9 VEPDEFNEVMKRLDEIEEKVE 29 (70)
T ss_pred cCHHHHHHHHHHHHHHHHHHH
Confidence 457899999999999999987
No 12
>PF05814 DUF843: Baculovirus protein of unknown function (DUF843); InterPro: IPR008561 This family consists of several unidentified baculovirus proteins of around 85 residues long with no known function.
Probab=26.91 E-value=66 Score=20.99 Aligned_cols=37 Identities=11% Similarity=0.099 Sum_probs=29.1
Q ss_pred hccCCCCCChhhhhcCCCCCChHHHHHHHHHHHHHHh
Q 034183 63 RFYGNPSICASAILLGSLPRPPAAAILYHALSDLFEK 99 (102)
Q Consensus 63 ~~Yg~~~vt~~~IL~g~v~~p~~a~~L~~~L~~~~~~ 99 (102)
-||.+++-+++|+-.++...+..=+.|=++.++...|
T Consensus 43 ~yy~kteS~~~dL~t~k~K~~KKK~~ln~afDAiLNK 79 (83)
T PF05814_consen 43 VYYIKTESTPQDLQTEKAKSIKKKRDLNDAFDAILNK 79 (83)
T ss_pred HHHcCCCCcHHHHhhhhhhhHHHHHHHHHHHHHHHhc
Confidence 4788888899999999888777777777777765543
No 13
>PRK11376 hlyE hemolysin E; Provisional
Probab=25.44 E-value=30 Score=26.99 Aligned_cols=20 Identities=25% Similarity=0.514 Sum_probs=13.8
Q ss_pred cEEEEEcccceeEEEeeeeeEEEec
Q 034183 33 ACYTYSCSKGAFVGCSLEGSIVATR 57 (102)
Q Consensus 33 ~i~sYs~SkGlfaGvsl~Gs~i~~r 57 (102)
-|.+||..-|+ ++|-.|-+-
T Consensus 192 liisysiaagv-----vegklip~l 211 (303)
T PRK11376 192 LIISYSIAAGV-----VEGKLIPEL 211 (303)
T ss_pred EEeeehhhhhh-----hcccccHHH
Confidence 48899998887 456555443
No 14
>TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic. This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.
Probab=24.91 E-value=40 Score=26.66 Aligned_cols=27 Identities=15% Similarity=-0.033 Sum_probs=17.9
Q ss_pred cccEEEEEcccceeEEEeeeeeEEEec
Q 034183 31 YAACYTYSCSKGAFVGCSLEGSIVATR 57 (102)
Q Consensus 31 ~a~i~sYs~SkGlfaGvsl~Gs~i~~r 57 (102)
.++++.+|-+|.+.+.-.+-|..+..+
T Consensus 182 g~Di~v~S~tK~l~G~~~~~~G~v~~~ 208 (378)
T TIGR01329 182 GADIVYHSATKFLAGHSDVMAGVLAVK 208 (378)
T ss_pred CCcEEEEecceeccCCccceeEEEEeC
Confidence 368999999998876544444454443
No 15
>PRK09681 putative type II secretion protein GspC; Provisional
Probab=24.83 E-value=32 Score=26.92 Aligned_cols=48 Identities=21% Similarity=0.265 Sum_probs=38.5
Q ss_pred eeeeEEEechHHHhhccCCCCCChhhhhc---C-CCCCChHHHHHHHHHHHHHH
Q 034183 49 LEGSIVATRAEENSRFYGNPSICASAILL---G-SLPRPPAAAILYHALSDLFE 98 (102)
Q Consensus 49 l~Gs~i~~r~d~N~~~Yg~~~vt~~~IL~---g-~v~~p~~a~~L~~~L~~~~~ 98 (102)
|.|=.+.+.+| ...|+.. +..+.||+. | ....|..+..|++.|.+..+
T Consensus 206 l~GYrl~Pgkd-~~lF~~~-GLq~GDva~sING~dL~D~~qa~~l~~~L~~~te 257 (276)
T PRK09681 206 IVGYAVKPGAD-RSLFDAS-GFKEGDIAIALNQQDFTDPRAMIALMRQLPSMDS 257 (276)
T ss_pred ceEEEECCCCc-HHHHHHc-CCCCCCEEEEeCCeeCCCHHHHHHHHHHhccCCe
Confidence 66777777766 7789999 799999984 5 35679999999999987654
No 16
>PF07040 DUF1326: Protein of unknown function (DUF1326); InterPro: IPR009758 This family consists of several hypothetical bacterial proteins, which seem to be found exclusively in Rhizobium and Ralstonia species. Members of this family are typically around 210 residues in length and contain 5 highly conserved cysteine residues at their N terminus. The function of this family is unknown.
Probab=23.93 E-value=83 Score=23.02 Aligned_cols=58 Identities=17% Similarity=0.169 Sum_probs=35.3
Q ss_pred ccEEEEEcccceeEEEeeeeeEEEechHHHhhccCCCCCChhhhhcCCCCCChHHHHHHH
Q 034183 32 AACYTYSCSKGAFVGCSLEGSIVATRAEENSRFYGNPSICASAILLGSLPRPPAAAILYH 91 (102)
Q Consensus 32 a~i~sYs~SkGlfaGvsl~Gs~i~~r~d~N~~~Yg~~~vt~~~IL~g~v~~p~~a~~L~~ 91 (102)
..++.|-.-+|-|.|+.|+|-.+..=-++.-...-- +-++ .|+-.+.+++++.+.|.+
T Consensus 24 ~a~~a~~I~eG~~~~vdL~GL~va~~~~~PG~~~eG-~~~~-~~~IDerAs~~QreAL~~ 81 (184)
T PF07040_consen 24 EAVLAWHIDEGHFGDVDLDGLNVAMAAHWPGNMHEG-NWKV-ALYIDERASDAQREALEA 81 (184)
T ss_pred eEEEEEEEeeeeECCEECCCCEEEEEEecCCCcccC-ceEE-EEEECCCCCHHHHHHHHH
Confidence 478999999999999999998877655443332222 1222 233333444555555543
No 17
>PRK07504 O-succinylhomoserine sulfhydrylase; Reviewed
Probab=22.10 E-value=90 Score=24.88 Aligned_cols=65 Identities=23% Similarity=0.148 Sum_probs=35.4
Q ss_pred cccEEEEEcccceeE-EEeeeeeEEEechHHHhhccCCCCCChhhhhcCCCCCChHHHHHHHHHHHHHHhhc
Q 034183 31 YAACYTYSCSKGAFV-GCSLEGSIVATRAEENSRFYGNPSICASAILLGSLPRPPAAAILYHALSDLFEKVE 101 (102)
Q Consensus 31 ~a~i~sYs~SkGlfa-Gvsl~Gs~i~~r~d~N~~~Yg~~~vt~~~IL~g~v~~p~~a~~L~~~L~~~~~~~~ 101 (102)
.+++..+|-+|-+-+ |..+.|.++..+....+++.. .....|....|..|..++..|+.+..++|
T Consensus 201 gaDivv~S~sK~l~g~g~~~GG~vv~~~~~i~~~~~~------~~~~~g~~~s~~~A~~~l~~L~tl~~R~~ 266 (398)
T PRK07504 201 GAHIVVYSATKHIDGQGRCLGGVVLSDKAWIEEHLQD------YFRHTGPSLSPFNAWTLLKGLETLPVRVR 266 (398)
T ss_pred CCCEEEeeccccccCCccceEEEEEeCcHHHHHHHHH------HHHHhCCCCCHHHHHHHHhccchHHHHHH
Confidence 368889998885532 344556665544333222211 01123444556666677677766666655
No 18
>PRK08114 cystathionine beta-lyase; Provisional
Probab=21.01 E-value=65 Score=26.11 Aligned_cols=65 Identities=11% Similarity=-0.008 Sum_probs=41.3
Q ss_pred cccEEEEEcccceeEEEeeeeeEEEechHHHhhccCCCCCChhhhhcCCCCCChHHHHHHHHHHHHHHhhc
Q 034183 31 YAACYTYSCSKGAFVGCSLEGSIVATRAEENSRFYGNPSICASAILLGSLPRPPAAAILYHALSDLFEKVE 101 (102)
Q Consensus 31 ~a~i~sYs~SkGlfaGvsl~Gs~i~~r~d~N~~~Yg~~~vt~~~IL~g~v~~p~~a~~L~~~L~~~~~~~~ 101 (102)
.+|++.+|-+|.+.+.-.+-+.++..+++..++ +.....+.|....|-.+--+..-|+.+--|+|
T Consensus 200 GaDivv~S~tKyl~Ghsdv~~G~v~~~~~~~~~------l~~~~~~~G~~~~p~~a~l~~rgl~TL~lR~~ 264 (395)
T PRK08114 200 GIDISIQAGTKYLVGHSDAMIGTAVANARCWEQ------LRENSYLMGQMVDADTAYMTSRGLRTLGVRLR 264 (395)
T ss_pred CCcEEEEcCcccccCCCcceeEEEEcCHHHHHH------HHHHHHhccCCCCHHHHHHHHcCCCcHHHHHH
Confidence 489999999999998876666666655443222 22223345666667676666666655555544
No 19
>COG5405 HslV ATP-dependent protease HslVU (ClpYQ), peptidase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=20.69 E-value=2.1e+02 Score=21.19 Aligned_cols=60 Identities=18% Similarity=0.283 Sum_probs=39.6
Q ss_pred cEEEEEcc-cceeEE---EeeeeeEEEechHHHhhccCCCCCChhhhhcCCCCCChHHHHHHHHHHHHHH
Q 034183 33 ACYTYSCS-KGAFVG---CSLEGSIVATRAEENSRFYGNPSICASAILLGSLPRPPAAAILYHALSDLFE 98 (102)
Q Consensus 33 ~i~sYs~S-kGlfaG---vsl~Gs~i~~r~d~N~~~Yg~~~vt~~~IL~g~v~~p~~a~~L~~~L~~~~~ 98 (102)
.|+++-+. |=+.+| |+|.-+++.-....+++.|+. ++|.|---..+.+-.|++-+++-.+
T Consensus 6 Tiv~vr~~gkv~iagDGQVtlG~tvmK~narKvRkl~~g------kvlaGFAGstADaftLfe~fe~kle 69 (178)
T COG5405 6 TIVAVRKNGKVVIAGDGQVTLGNTVMKGNARKVRRLYNG------KVLAGFAGSTADAFTLFERFEAKLE 69 (178)
T ss_pred EEEEEeeCCeEEEecCceEeecceeeeccHHHHHHHcCC------cEEEEecccchhHHHHHHHHHHHHH
Confidence 45555554 223333 788889999999999999976 5566644455667777666655443
No 20
>PHA01632 hypothetical protein
Probab=20.58 E-value=1.1e+02 Score=18.79 Aligned_cols=25 Identities=24% Similarity=0.538 Sum_probs=18.4
Q ss_pred hhcCCCCCChHHHHHHHHHHHHHHh
Q 034183 75 ILLGSLPRPPAAAILYHALSDLFEK 99 (102)
Q Consensus 75 IL~g~v~~p~~a~~L~~~L~~~~~~ 99 (102)
||..+||.-|.-++|..+|.+....
T Consensus 19 ilieqvp~kpteeelrkvlpkilkd 43 (64)
T PHA01632 19 ILIEQVPQKPTEEELRKVLPKILKD 43 (64)
T ss_pred EehhhcCCCCCHHHHHHHHHHHHHH
Confidence 5677888877778888887665543
No 21
>PF04210 MtrG: Tetrahydromethanopterin S-methyltransferase, subunit G ; InterPro: IPR005866 This model describes the N5-methyltetrahydromethanopterin: coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranferase is a membrane-associated enzyme complex that uses methyl-transfer reaction to drive a sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of a methyl group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0015948 methanogenesis, 0016021 integral to membrane
Probab=20.36 E-value=1.1e+02 Score=19.33 Aligned_cols=21 Identities=29% Similarity=0.346 Sum_probs=18.7
Q ss_pred CCChHHHHHHHHHHHHHHhhc
Q 034183 81 PRPPAAAILYHALSDLFEKVE 101 (102)
Q Consensus 81 ~~p~~a~~L~~~L~~~~~~~~ 101 (102)
.+|++-.++.+-|++..+|+|
T Consensus 9 v~~~~~~~i~~rLd~iEeKvE 29 (70)
T PF04210_consen 9 VDPDDFNEIMKRLDEIEEKVE 29 (70)
T ss_pred eCHHHHHHHHHHHHHHHHHHH
Confidence 368899999999999999987
Done!