Query 034183
Match_columns 102
No_of_seqs 108 out of 403
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 18:16:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034183.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034183hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2yh5_A DAPX protein, BAMC; lip 30.4 35 0.0012 22.4 2.6 24 78-101 98-121 (127)
2 3twe_A Alpha4H; unknown functi 28.5 36 0.0012 16.6 1.7 15 86-100 3-17 (27)
3 3ic9_A Dihydrolipoamide dehydr 16.0 1.4E+02 0.0047 22.9 3.7 65 36-101 407-471 (492)
4 4aq4_A SN-glycerol-3-phosphate 15.8 65 0.0022 23.2 1.7 28 74-101 387-414 (419)
5 1cmb_A Met APO-repressor; DNA- 15.8 1.4E+02 0.0048 19.0 3.1 31 62-93 63-95 (104)
6 2qt7_A Receptor-type tyrosine- 15.8 74 0.0025 20.1 1.7 31 40-75 33-63 (91)
7 4hti_A Receptor-type tyrosine- 14.5 82 0.0028 20.1 1.7 32 40-76 40-71 (99)
8 2wuj_A Septum site-determining 14.5 1.3E+02 0.0043 16.9 2.4 30 70-99 3-38 (57)
9 2yy0_A C-MYC-binding protein; 14.1 1.9E+02 0.0064 16.1 3.0 28 74-101 9-36 (53)
10 2q2k_A Hypothetical protein; p 13.1 1.7E+02 0.0058 17.0 2.7 28 73-100 37-66 (70)
No 1
>2yh5_A DAPX protein, BAMC; lipid binding protein, lipoprotein, BAM complex; 1.25A {Escherichia coli} PDB: 3sns_A
Probab=30.42 E-value=35 Score=22.37 Aligned_cols=24 Identities=21% Similarity=0.278 Sum_probs=20.1
Q ss_pred CCCCCChHHHHHHHHHHHHHHhhc
Q 034183 78 GSLPRPPAAAILYHALSDLFEKVE 101 (102)
Q Consensus 78 g~v~~p~~a~~L~~~L~~~~~~~~ 101 (102)
|+.-+...++.|+.+|.+.+.++|
T Consensus 98 G~p~~~~~a~~ll~~L~~~l~~~~ 121 (127)
T 2yh5_A 98 GHTLTQSQNDALVAVFQAAFSKLE 121 (127)
T ss_dssp SCBCCHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhh
Confidence 444557799999999999999987
No 2
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=28.46 E-value=36 Score=16.60 Aligned_cols=15 Identities=47% Similarity=0.671 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHhh
Q 034183 86 AAILYHALSDLFEKV 100 (102)
Q Consensus 86 a~~L~~~L~~~~~~~ 100 (102)
|++||..|+++-+++
T Consensus 3 adelykeledlqerl 17 (27)
T 3twe_A 3 ADELYKELEDLQERL 17 (27)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 567777777666543
No 3
>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}
Probab=15.95 E-value=1.4e+02 Score=22.95 Aligned_cols=65 Identities=18% Similarity=0.176 Sum_probs=43.3
Q ss_pred EEEcccceeEEEeeeeeEEEechHHHhhccCCCCCChhhhhcCCCCCChHHHHHHHHHHHHHHhhc
Q 034183 36 TYSCSKGAFVGCSLEGSIVATRAEENSRFYGNPSICASAILLGSLPRPPAAAILYHALSDLFEKVE 101 (102)
Q Consensus 36 sYs~SkGlfaGvsl~Gs~i~~r~d~N~~~Yg~~~vt~~~IL~g~v~~p~~a~~L~~~L~~~~~~~~ 101 (102)
.+.+..|-..|+.+-|.--.+.-+.=...-.. ++|..||..---+.|.-++.|.+++..+..+++
T Consensus 407 i~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~-~~t~~~l~~~~~~hPt~~e~~~~a~~~~~~~~~ 471 (492)
T 3ic9_A 407 YADRTSGEFLGAEMFGPAAEHIGHLLAWARQQ-QMTVQAMLTMPFYHPVIEEGLRTALRDAQQKLA 471 (492)
T ss_dssp EEETTTCBEEEEEEEETTHHHHHHHHHHHHHT-TCBHHHHTTSCCCTTCTHHHHHHHHHHHHHTSS
T ss_pred EEECCCCEEEEEEEECCCHHHHHHHHHHHHHC-CCCHHHHhhCCCCCCChHHHHHHHHHHHHHHhh
Confidence 35566788889888875322222221222334 489999876645667788999999998888765
No 4
>4aq4_A SN-glycerol-3-phosphate-binding periplasmic prote; diester-binding protein; HET: G3P; 1.80A {Escherichia coli}
Probab=15.77 E-value=65 Score=23.22 Aligned_cols=28 Identities=14% Similarity=0.164 Sum_probs=15.0
Q ss_pred hhhcCCCCCChHHHHHHHHHHHHHHhhc
Q 034183 74 AILLGSLPRPPAAAILYHALSDLFEKVE 101 (102)
Q Consensus 74 ~IL~g~v~~p~~a~~L~~~L~~~~~~~~ 101 (102)
+++.|+..+-..++.+.+.+++.+++|+
T Consensus 387 ~~~~g~~t~e~al~~~~~~~~~~L~~y~ 414 (419)
T 4aq4_A 387 SVWTGKKTPQQALDTAVERGNQLLRRFE 414 (419)
T ss_dssp HHHTTSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 3455654433334556666666666654
No 5
>1cmb_A Met APO-repressor; DNA-binding regulatory protein; 1.80A {Escherichia coli} SCOP: a.43.1.5 PDB: 1cma_A 1cmc_A* 1mjl_A* 1mj2_A 1mjk_A* 1mjm_A 1mjo_A* 1mjp_A 1mjq_A*
Probab=15.77 E-value=1.4e+02 Score=18.99 Aligned_cols=31 Identities=26% Similarity=0.306 Sum_probs=22.1
Q ss_pred hhccCCCCCChhhhhcCCC--CCChHHHHHHHHH
Q 034183 62 SRFYGNPSICASAILLGSL--PRPPAAAILYHAL 93 (102)
Q Consensus 62 ~~~Yg~~~vt~~~IL~g~v--~~p~~a~~L~~~L 93 (102)
++|-|+| +...+=|.-+. ..|.+++.+|+.+
T Consensus 63 HA~TGQP-LP~D~Dl~Kd~~d~iP~~ak~~m~~~ 95 (104)
T 1cmb_A 63 HAFTGQP-LPDDADLRKERSDEIPEAAKEIMREM 95 (104)
T ss_dssp HHHHCCC-CCCGGGGBTTSCSCSCHHHHHHHHHT
T ss_pred HHhcCCC-CCCchhhhhcCCccchHHHHHHHHHh
Confidence 4677886 66666665443 3599999999875
No 6
>2qt7_A Receptor-type tyrosine-protein phosphatase-like N; IA-2, ICA-512, protein-tyrosine phosphatase, transmembrane protein, diabetes, autoimmunity; 1.30A {Homo sapiens} PDB: 3n01_A 3np5_A 3ng8_A 3n4w_A
Probab=15.77 E-value=74 Score=20.10 Aligned_cols=31 Identities=23% Similarity=0.480 Sum_probs=26.2
Q ss_pred ccceeEEEeeeeeEEEechHHHhhccCCCCCChhhh
Q 034183 40 SKGAFVGCSLEGSIVATRAEENSRFYGNPSICASAI 75 (102)
Q Consensus 40 SkGlfaGvsl~Gs~i~~r~d~N~~~Yg~~~vt~~~I 75 (102)
..|.|.-+++.|..++.|-+.|.. ++|+.|+
T Consensus 33 ~~~~Ft~i~V~g~aVTFrV~~N~~-----n~taadV 63 (91)
T 2qt7_A 33 SSGSFINISVVGPALTFRIRHNEQ-----NLSLADV 63 (91)
T ss_dssp CGGGEEEEEEETTEEEEEECCCTT-----CCCHHHH
T ss_pred CccceeeeEeecceEEEEeccCcc-----cCCHHHH
Confidence 368999999999999999998876 5777665
No 7
>4hti_A Receptor-type tyrosine-protein phosphatase N2; phogrin, IA-2BETA, protein-tyrosine phosphatase, transmembra protein, diabetes, autoimmunity; 1.95A {Homo sapiens} PDB: 4htj_A
Probab=14.54 E-value=82 Score=20.15 Aligned_cols=32 Identities=16% Similarity=0.307 Sum_probs=27.1
Q ss_pred ccceeEEEeeeeeEEEechHHHhhccCCCCCChhhhh
Q 034183 40 SKGAFVGCSLEGSIVATRAEENSRFYGNPSICASAIL 76 (102)
Q Consensus 40 SkGlfaGvsl~Gs~i~~r~d~N~~~Yg~~~vt~~~IL 76 (102)
+.+.|.-+++.|..++.|-+.|.+ ++|+.|+-
T Consensus 40 ~~~~F~~isV~g~aVTFrV~~N~~-----n~taadVA 71 (99)
T 4hti_A 40 PSSAFADVEVLGPAVTFKVSANVQ-----NVTTEDVE 71 (99)
T ss_dssp CGGGEEEEEEETTEEEEEECCCTT-----CCCHHHHH
T ss_pred chhheeeeeecCceEEEEeccCCC-----CCCHHHHH
Confidence 457899999999999999999987 57887764
No 8
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=14.48 E-value=1.3e+02 Score=16.90 Aligned_cols=30 Identities=7% Similarity=0.070 Sum_probs=19.6
Q ss_pred CChhhhhcCCCC------CChHHHHHHHHHHHHHHh
Q 034183 70 ICASAILLGSLP------RPPAAAILYHALSDLFEK 99 (102)
Q Consensus 70 vt~~~IL~g~v~------~p~~a~~L~~~L~~~~~~ 99 (102)
+||.||..-... .|.+.+.+++.+..-++.
T Consensus 3 lTp~dI~~k~F~~~~rGY~~~EVD~FLd~v~~~~~~ 38 (57)
T 2wuj_A 3 LTPNDIHNKTFTKSFRGYDEDEVNEFLAQVRKDYEI 38 (57)
T ss_dssp CCHHHHTTCCCCEETTEEEHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHhhCcCCCCCCCcCHHHHHHHHHHHHHHHHH
Confidence 788888875543 267777776666554443
No 9
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=14.14 E-value=1.9e+02 Score=16.10 Aligned_cols=28 Identities=29% Similarity=0.364 Sum_probs=16.5
Q ss_pred hhhcCCCCCChHHHHHHHHHHHHHHhhc
Q 034183 74 AILLGSLPRPPAAAILYHALSDLFEKVE 101 (102)
Q Consensus 74 ~IL~g~v~~p~~a~~L~~~L~~~~~~~~ 101 (102)
+.|.+..|++..++.|..-+.++-.+++
T Consensus 9 ~~LG~~~p~~~d~eaLk~E~~eLk~k~~ 36 (53)
T 2yy0_A 9 HHLGAATPENPEIELLRLELAEMKEKYE 36 (53)
T ss_dssp -------CCCHHHHHHHHHHHHHHHHHH
T ss_pred HHcCCCCCChhhHHHHHHHHHHHHHHHH
Confidence 4555446778888888888877776664
No 10
>2q2k_A Hypothetical protein; protein-DNA, partition, segregation, PARB, DNA binding protein/DNA complex; HET: DNA 5IU EPE; 3.00A {Staphylococcus aureus}
Probab=13.08 E-value=1.7e+02 Score=17.04 Aligned_cols=28 Identities=29% Similarity=0.471 Sum_probs=22.1
Q ss_pred hhhh--cCCCCCChHHHHHHHHHHHHHHhh
Q 034183 73 SAIL--LGSLPRPPAAAILYHALSDLFEKV 100 (102)
Q Consensus 73 ~~IL--~g~v~~p~~a~~L~~~L~~~~~~~ 100 (102)
.||+ ..+||+-....-+.++|.++.+.|
T Consensus 37 pqifdflenvprgtktahirealrryieei 66 (70)
T 2q2k_A 37 PQIFDFLENVPRGTKTAHIREALRRYIEEI 66 (70)
T ss_dssp HHHHHHHTTSCTTCHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHcCCCccchHHHHHHHHHHHHHh
Confidence 3565 367888888889999999998876
Done!