Query 034183
Match_columns 102
No_of_seqs 108 out of 403
Neff 6.0
Searched_HMMs 13730
Date Mon Mar 25 18:16:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034183.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/034183hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2gycf1 d.99.1.1 (F:59-149) Ri 23.9 11 0.00079 22.0 0.7 22 53-76 21-42 (91)
2 d2gf3a2 d.16.1.3 (A:218-321) S 22.0 59 0.0043 18.4 4.0 66 31-101 23-89 (104)
3 d2okua1 a.48.5.1 (A:443-564) U 19.7 36 0.0026 21.1 2.6 23 79-101 24-46 (122)
4 d1diva1 d.99.1.1 (A:56-149) Ri 18.9 12 0.00089 21.8 0.2 21 54-76 24-44 (94)
5 d1biaa2 b.34.1.1 (A:271-317) B 18.9 6.5 0.00047 20.3 -1.1 30 41-71 16-45 (47)
6 d1mixa1 a.11.2.1 (A:195-308) T 14.9 59 0.0043 18.4 2.7 23 72-94 26-48 (114)
7 d3lkfa_ f.6.1.1 (A:) Leukocidi 14.6 46 0.0034 23.5 2.5 16 2-17 115-130 (299)
8 d1h4ra1 a.11.2.1 (A:104-214) M 14.3 62 0.0045 18.4 2.7 21 73-93 21-41 (111)
9 d1gg3a1 a.11.2.1 (A:82-187) Er 14.0 65 0.0047 18.2 2.7 21 73-93 21-41 (106)
10 d1x0ha1 d.332.1.1 (A:8-107) Ra 13.6 25 0.0019 20.9 0.7 8 60-67 92-99 (100)
No 1
>d2gycf1 d.99.1.1 (F:59-149) Ribosomal protein L9 C-domain {Escherichia coli [TaxId: 562]}
Probab=23.89 E-value=11 Score=22.05 Aligned_cols=22 Identities=23% Similarity=0.560 Sum_probs=17.4
Q ss_pred EEEechHHHhhccCCCCCChhhhh
Q 034183 53 IVATRAEENSRFYGNPSICASAIL 76 (102)
Q Consensus 53 ~i~~r~d~N~~~Yg~~~vt~~~IL 76 (102)
.|..+-..+-++||. ||+.||-
T Consensus 21 ~i~~kage~GkLfGS--Vt~~dI~ 42 (91)
T d2gycf1 21 TIASKAGDEGKLFGS--IGTRDIA 42 (91)
T ss_dssp EEEECEEETTEESSC--CCHHHHH
T ss_pred EEEEEeCCCCeeeee--cCHHHHH
Confidence 355666778899999 9999885
No 2
>d2gf3a2 d.16.1.3 (A:218-321) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}
Probab=21.99 E-value=59 Score=18.36 Aligned_cols=66 Identities=15% Similarity=0.146 Sum_probs=40.4
Q ss_pred cccEEEEEcccceeEEE-eeeeeEEEechHHHhhccCCCCCChhhhhcCCCCCChHHHHHHHHHHHHHHhhc
Q 034183 31 YAACYTYSCSKGAFVGC-SLEGSIVATRAEENSRFYGNPSICASAILLGSLPRPPAAAILYHALSDLFEKVE 101 (102)
Q Consensus 31 ~a~i~sYs~SkGlfaGv-sl~Gs~i~~r~d~N~~~Yg~~~vt~~~IL~g~v~~p~~a~~L~~~L~~~~~~~~ 101 (102)
.-++|.+-...+.|=|+ +++|.-+..-. ...|. .++|...-......+.+.+.|.+.|++++..++
T Consensus 23 ~fP~fi~~~~~~~~YGfP~~~~~g~Ki~~----~~~g~-~~dPd~~dr~~~~~~~~~~~l~~~v~~~~Pgl~ 89 (104)
T d2gf3a2 23 DFPGFMVEVPNGIYYGFPSFGGCGLKLGY----HTFGQ-KIDPDTINREFGVYPEDESNLRAFLEEYMPGAN 89 (104)
T ss_dssp TCCEEEEEETTEEEEEECBSTTCCEEEEE----SSCCE-ECCTTTCCCCTTSSHHHHHHHHHHHHHHCGGGC
T ss_pred CCCEEEEECCCCeEEecCCCCCCceEEEE----ecCCC-ccCccccccCCCCCHHHHHHHHHHHHHHCCCCC
Confidence 35788776666666666 66653222211 24566 377755433223456788999999999887653
No 3
>d2okua1 a.48.5.1 (A:443-564) Uncharacterized protein PG0775 {Porphyromonas gingivalis [TaxId: 837]}
Probab=19.74 E-value=36 Score=21.11 Aligned_cols=23 Identities=17% Similarity=0.254 Sum_probs=20.1
Q ss_pred CCCCChHHHHHHHHHHHHHHhhc
Q 034183 79 SLPRPPAAAILYHALSDLFEKVE 101 (102)
Q Consensus 79 ~v~~p~~a~~L~~~L~~~~~~~~ 101 (102)
.++..|+.++|.+.|.+...++|
T Consensus 24 ~~~~~pEl~~lk~rl~~m~~r~e 46 (122)
T d2okua1 24 QTEVKPELQPMKEALARMTDRAE 46 (122)
T ss_dssp GCCCCGGGHHHHHHHHHHHHHHH
T ss_pred hCCCCHHHHHHHHHHHHHHHHHH
Confidence 46678999999999999999886
No 4
>d1diva1 d.99.1.1 (A:56-149) Ribosomal protein L9 C-domain {Bacillus stearothermophilus [TaxId: 1422]}
Probab=18.87 E-value=12 Score=21.82 Aligned_cols=21 Identities=29% Similarity=0.624 Sum_probs=15.9
Q ss_pred EEechHHHhhccCCCCCChhhhh
Q 034183 54 VATRAEENSRFYGNPSICASAIL 76 (102)
Q Consensus 54 i~~r~d~N~~~Yg~~~vt~~~IL 76 (102)
|...-..|-++||. ||+.||.
T Consensus 24 i~~k~ge~GkLfGS--Vt~~dI~ 44 (94)
T d1diva1 24 IPAKAGEGGRLFGS--ITSKQIA 44 (94)
T ss_dssp EEECBCGGGEEEEE--ECHHHHH
T ss_pred EEEEECCCCeeEec--ccHHHHH
Confidence 44556677889998 9998874
No 5
>d1biaa2 b.34.1.1 (A:271-317) Biotin repressor/biotin holoenzyme synthetase, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=18.86 E-value=6.5 Score=20.27 Aligned_cols=30 Identities=17% Similarity=0.258 Sum_probs=23.8
Q ss_pred cceeEEEeeeeeEEEechHHHhhccCCCCCC
Q 034183 41 KGAFVGCSLEGSIVATRAEENSRFYGNPSIC 71 (102)
Q Consensus 41 kGlfaGvsl~Gs~i~~r~d~N~~~Yg~~~vt 71 (102)
.|.+.|+.=+|+.+....+.-+.|+.- +||
T Consensus 16 ~G~a~gId~~G~Lll~t~~g~~~~~sG-EVS 45 (47)
T d1biaa2 16 FGISRGIDKQGALLLEQDGIIKPWMGG-EIS 45 (47)
T ss_dssp EEEEEEECTTSCEEEEETTEEEEESSC-EEE
T ss_pred EEEEeeECCCCcEEEEECCCEEEEEEE-EEE
Confidence 599999999999999887776666655 354
No 6
>d1mixa1 a.11.2.1 (A:195-308) Talin {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=14.85 E-value=59 Score=18.45 Aligned_cols=23 Identities=26% Similarity=0.241 Sum_probs=17.8
Q ss_pred hhhhhcCCCCCChHHHHHHHHHH
Q 034183 72 ASAILLGSLPRPPAAAILYHALS 94 (102)
Q Consensus 72 ~~~IL~g~v~~p~~a~~L~~~L~ 94 (102)
-.||+.|+.+.+.+....+.+|.
T Consensus 26 k~dil~G~~~~~~~~a~~Laal~ 48 (114)
T d1mixa1 26 RDDILNGSHPVSFDKACEFAGYQ 48 (114)
T ss_dssp HHHHHTTSSCCCHHHHHHHHHHH
T ss_pred HHHHHCCCCCCCHHHHHHHHHHH
Confidence 36999999998887777766654
No 7
>d3lkfa_ f.6.1.1 (A:) Leukocidin F (HlgB) {Staphylococcus aureus [TaxId: 1280]}
Probab=14.63 E-value=46 Score=23.50 Aligned_cols=16 Identities=31% Similarity=0.821 Sum_probs=12.3
Q ss_pred eeeecCceeEEecccc
Q 034183 2 HFSFGAGLSAAAGIVG 17 (102)
Q Consensus 2 ~~~lG~d~svaaGP~G 17 (102)
-++|||++.++-||-|
T Consensus 115 gY~~GG~~~~~~g~~G 130 (299)
T d3lkfa_ 115 GYTFGGDISISNGLSG 130 (299)
T ss_dssp EEETTTEEEEEECC--
T ss_pred eEEecceeeeCCCCCC
Confidence 4789999999989887
No 8
>d1h4ra1 a.11.2.1 (A:104-214) Merlin {Human (Homo sapiens) [TaxId: 9606]}
Probab=14.31 E-value=62 Score=18.37 Aligned_cols=21 Identities=29% Similarity=0.426 Sum_probs=16.5
Q ss_pred hhhhcCCCCCChHHHHHHHHH
Q 034183 73 SAILLGSLPRPPAAAILYHAL 93 (102)
Q Consensus 73 ~~IL~g~v~~p~~a~~L~~~L 93 (102)
.||+.|+.+.+.+...++.+|
T Consensus 21 ~dil~G~~~~~~~~a~~LAal 41 (111)
T d1h4ra1 21 KQILDEKIYCPPEASVLLASY 41 (111)
T ss_dssp HHHHTTSSCCCHHHHHHHHHH
T ss_pred HHHHcCCCCCCHHHHHHHHHH
Confidence 699999999888777665555
No 9
>d1gg3a1 a.11.2.1 (A:82-187) Erythroid membrane protein 4.1R {Human (Homo sapiens) [TaxId: 9606]}
Probab=13.99 E-value=65 Score=18.21 Aligned_cols=21 Identities=29% Similarity=0.344 Sum_probs=16.6
Q ss_pred hhhhcCCCCCChHHHHHHHHH
Q 034183 73 SAILLGSLPRPPAAAILYHAL 93 (102)
Q Consensus 73 ~~IL~g~v~~p~~a~~L~~~L 93 (102)
.+|+.|+.+.+.+...++.+|
T Consensus 21 ~~i~~G~~~~~~~~a~~Laal 41 (106)
T d1gg3a1 21 QDIVAGRLPCSFATLALLGSY 41 (106)
T ss_dssp HHHHTTSSCCCHHHHHHHHHH
T ss_pred HHHHhcccCCCHHHHHHHHHH
Confidence 699999999887777665555
No 10
>d1x0ha1 d.332.1.1 (A:8-107) Ras GTPase-activating-like protein IQGAP1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=13.64 E-value=25 Score=20.92 Aligned_cols=8 Identities=50% Similarity=1.082 Sum_probs=5.4
Q ss_pred HHhhccCC
Q 034183 60 ENSRFYGN 67 (102)
Q Consensus 60 ~N~~~Yg~ 67 (102)
-|++|||+
T Consensus 92 inkKFY~k 99 (100)
T d1x0ha1 92 LNKKFYGK 99 (100)
T ss_dssp HHHTTCCC
T ss_pred HHHHhcCC
Confidence 56777765
Done!