BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 034184
         (102 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2PN0|A Chain A, Prokaryotic Transcription Elongation Factor GreaGREB FROM
           Nitrosomonas Europaea
 pdb|2PN0|B Chain B, Prokaryotic Transcription Elongation Factor GreaGREB FROM
           Nitrosomonas Europaea
 pdb|2PN0|C Chain C, Prokaryotic Transcription Elongation Factor GreaGREB FROM
           Nitrosomonas Europaea
 pdb|2PN0|D Chain D, Prokaryotic Transcription Elongation Factor GreaGREB FROM
           Nitrosomonas Europaea
          Length = 141

 Score = 27.7 bits (60), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 10/61 (16%)

Query: 4   SLPQTKDVDLSDEN------VDKACLSVSRA----VPEPGASVVHMTVDQVNLQPIGDGE 53
           +L   KDVD S E       V  A L +++      P+PG  V+ + + +V  QP   GE
Sbjct: 77  TLVYPKDVDTSGEKISILAPVGSALLGLAQGDEIEWPKPGGGVLRVRIVEVTYQPERSGE 136

Query: 54  W 54
           +
Sbjct: 137 Y 137


>pdb|2JX0|A Chain A, The Paxillin-Binding Domain (Pbd) Of G Protein Coupled
           Receptor (Gpcr)-Kinase (Grk) Interacting Protein 1
           (Git1)
          Length = 135

 Score = 25.0 bits (53), Expect = 9.8,   Method: Compositional matrix adjust.
 Identities = 24/100 (24%), Positives = 44/100 (44%), Gaps = 17/100 (17%)

Query: 2   DNSLPQTKDVDLSDENVDKACLSVSRAVPE-------PGASVVHMTVDQV--------NL 46
           D  LP T+DV L  E V K    + RA  E       P +  +H+ V ++         L
Sbjct: 10  DPGLPSTEDVILKTEQVTKNIQELLRAAQEFKHDSFVPCSEKIHLAVTEMASLFPKRPAL 69

Query: 47  QPIGDGEWSDIQATEARI-ADVREVAPETEGSSLDIPVVS 85
           +P+       + A+  R+ ++ R+  P   G+ +D  +++
Sbjct: 70  EPVRSS-LRLLNASAYRLQSECRKTVPPEPGAPVDFQLLT 108


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.308    0.127    0.366 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,368,176
Number of Sequences: 62578
Number of extensions: 116504
Number of successful extensions: 221
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 220
Number of HSP's gapped (non-prelim): 4
length of query: 102
length of database: 14,973,337
effective HSP length: 67
effective length of query: 35
effective length of database: 10,780,611
effective search space: 377321385
effective search space used: 377321385
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 45 (21.9 bits)