BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 034184
(102 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6BGV9|ATG7_DEBHA Ubiquitin-like modifier-activating enzyme ATG7 OS=Debaryomyces
hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC
0083 / IGC 2968) GN=ATG7 PE=3 SV=2
Length = 652
Score = 37.0 bits (84), Expect = 0.038, Method: Composition-based stats.
Identities = 24/82 (29%), Positives = 42/82 (51%), Gaps = 12/82 (14%)
Query: 18 VDKACLSVSRAVPEPGASVVHMTVDQVNLQPIGDGEWSDIQATEARIADVREVAP--ETE 75
VD +S S V +P S D+ G GEW I+A ++E+ P +++
Sbjct: 358 VDNGRISYSNPVRQPLFSFKDCFSDE------GQGEWKAIRAANT----LKEIFPDVQSK 407
Query: 76 GSSLDIPVVSPPVNNHHEQGTN 97
G +L++P++ PVNN +Q ++
Sbjct: 408 GYNLEVPMIGHPVNNETKQKSS 429
>sp|P56467|FOLD_HELPY Bifunctional protein FolD OS=Helicobacter pylori (strain ATCC
700392 / 26695) GN=folD PE=3 SV=2
Length = 290
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 42/81 (51%), Gaps = 8/81 (9%)
Query: 8 TKDVDLSDENVDKACLSVSR------AVPEPGASVVHMTVDQVN-LQPIGDGEWSDIQAT 60
TKD+ +N D C+ V + ++ + GA VV + ++ +N + +GD +++++Q
Sbjct: 196 TKDISFYTQNADIVCVGVGKPDLIKASMLKKGAVVVDIGINHLNDGRIVGDVDFNNVQKV 255
Query: 61 EARIADV-REVAPETEGSSLD 80
I V + V P T S L+
Sbjct: 256 AGFITPVPKGVGPMTIVSLLE 276
>sp|Q989L5|IDI2_RHILO Isopentenyl-diphosphate delta-isomerase OS=Rhizobium loti (strain
MAFF303099) GN=fni PE=3 SV=1
Length = 351
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 13/75 (17%)
Query: 16 ENVDKACLSVSRAVPEPGASVVHMTVDQVNLQPIGDGEWSDIQATEARIADVREVAPETE 75
+ +D AC +V E +VH+ Q +QP GD +W + A AR A
Sbjct: 139 DGLDLACRAVD--ALEADGLIVHLNALQEAVQPEGDRDWRGVLAQIARAA---------- 186
Query: 76 GSSLDIPVVSPPVNN 90
S+D+P+V+ V +
Sbjct: 187 -RSVDVPIVAKEVGS 200
>sp|Q8CT52|HTRAL_STAES Serine protease HtrA-like OS=Staphylococcus epidermidis (strain
ATCC 12228) GN=SE_0722/SE_0723 PE=3 SV=2
Length = 585
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 49 IGDGEWSDIQATEARIADVREVAPETEGSSLDIPVVSP 86
IG +WSD+ +A++AD + P T G S +I + P
Sbjct: 343 IGKDKWSDLAVVKAKVAD-ENIKPMTMGDSNNIKLAEP 379
>sp|Q5HQE2|HTRAL_STAEQ Serine protease HtrA-like OS=Staphylococcus epidermidis (strain
ATCC 35984 / RP62A) GN=SERP0611 PE=3 SV=1
Length = 585
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 49 IGDGEWSDIQATEARIADVREVAPETEGSSLDIPVVSP 86
IG +WSD+ +A++AD + P T G S +I + P
Sbjct: 343 IGKDKWSDLAVVKAKVAD-ENIKPMTMGDSNNIKLAEP 379
>sp|Q46QB2|GLK_CUPPJ Glucokinase OS=Cupriavidus pinatubonensis (strain JMP134 / LMG
1197) GN=glk PE=3 SV=1
Length = 343
Score = 30.4 bits (67), Expect = 3.2, Method: Composition-based stats.
Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Query: 23 LSVSRAVPEPGASVVHMTVD--QVNLQPIGDGEWSDIQATEARIADV 67
L VS VP PG V + + + L P+ D EW +AT A + V
Sbjct: 155 LGVSGLVPAPGGGAVALAGEGGHIELMPVTDDEWIAWRATHASLGRV 201
>sp|A3LPA1|ATG7_PICST Ubiquitin-like modifier-activating enzyme ATG7 OS=Scheffersomyces
stipitis (strain ATCC 58785 / CBS 6054 / NBRC 10063 /
NRRL Y-11545) GN=ATG7 PE=3 SV=2
Length = 652
Score = 30.0 bits (66), Expect = 4.1, Method: Composition-based stats.
Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 12/82 (14%)
Query: 18 VDKACLSVSRAVPEPGASVVHMTVDQVNLQPIGDGEWSDIQATEARIADVREVAP--ETE 75
VD +S S V +P S D G GE +A EA ++E+ P +E
Sbjct: 363 VDNGRISYSNPVRQPLFSFKDCFSDN------GQGEMKAARAAEA----LKEIFPGVSSE 412
Query: 76 GSSLDIPVVSPPVNNHHEQGTN 97
G SL++P++ PV++ + +N
Sbjct: 413 GISLEVPMIGHPVSDEAKSKSN 434
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.308 0.127 0.366
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41,364,894
Number of Sequences: 539616
Number of extensions: 1506351
Number of successful extensions: 3207
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 3205
Number of HSP's gapped (non-prelim): 14
length of query: 102
length of database: 191,569,459
effective HSP length: 71
effective length of query: 31
effective length of database: 153,256,723
effective search space: 4750958413
effective search space used: 4750958413
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 55 (25.8 bits)