Query 034184
Match_columns 102
No_of_seqs 15 out of 17
Neff 1.9
Searched_HMMs 29240
Date Mon Mar 25 18:18:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034184.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034184hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1lg4_A Doppel protein, prion-l 11.1 81 0.0028 22.8 1.0 27 57-83 21-47 (129)
2 1b4g_A Potassium channel; inac 7.0 1.1E+02 0.0036 17.4 0.1 8 18-25 20-27 (30)
3 1ory_B Flagellin; flagellar ch 6.4 1E+02 0.0036 18.4 -0.1 13 55-67 5-17 (55)
4 4gio_A Putative lipoprotein; u 5.7 2.3E+02 0.0078 18.6 1.3 43 39-81 59-101 (107)
5 2p6w_A VP54, putative glycosyl 5.1 2E+02 0.0069 22.2 0.7 18 1-18 88-105 (213)
6 2fnf_X Putative RAS effector N 4.8 2.9E+02 0.01 16.6 1.2 32 66-101 3-34 (72)
7 3vay_A HAD-superfamily hydrola 4.6 2.1E+02 0.0073 17.7 0.5 14 48-61 177-190 (230)
8 3clq_A Uncharacterized protein 4.1 3.7E+02 0.013 22.4 1.7 35 20-55 242-280 (421)
9 4fbc_A Protein synthesis inhib 3.6 3.4E+02 0.012 20.2 0.9 26 61-86 29-54 (282)
10 2fho_A Spliceosomal protein SF 3.3 4.5E+02 0.015 15.8 1.2 16 6-21 10-30 (47)
No 1
>1lg4_A Doppel protein, prion-like protein; scrapie, prion protein; NMR {Homo sapiens} SCOP: d.6.1.1
Probab=11.07 E-value=81 Score=22.78 Aligned_cols=27 Identities=41% Similarity=0.425 Sum_probs=14.8
Q ss_pred chhhhhhhhhccccccCCCCCcccccc
Q 034184 57 IQATEARIADVREVAPETEGSSLDIPV 83 (102)
Q Consensus 57 ~q~tEa~isDVREv~~E~e~sSLDIpV 83 (102)
-|-|||+++..|-=+---.|..|||-.
T Consensus 21 ~~vTea~~~e~rpGaFir~GrKLdIDf 47 (129)
T 1lg4_A 21 AQITEAQVAENRPGAFIKQGRKLDIDF 47 (129)
T ss_dssp --------CCCSTTCCCCCSCCCSCCC
T ss_pred cccchhhhhhcCcchHHhCCceeeeec
Confidence 488999999888777777788898853
No 2
>1b4g_A Potassium channel; inactivation GATE, phosphorylation; HET: SEP; NMR {Homo sapiens} SCOP: j.12.1.1 PDB: 1b4i_A* 1ztn_A
Probab=6.95 E-value=1.1e+02 Score=17.39 Aligned_cols=8 Identities=38% Similarity=0.675 Sum_probs=5.8
Q ss_pred cccccccc
Q 034184 18 VDKACLSV 25 (102)
Q Consensus 18 VDKAClS~ 25 (102)
--|||+|-
T Consensus 20 s~KaC~sa 27 (30)
T 1b4g_A 20 PSKTCLKE 27 (30)
T ss_dssp SSCCCSCC
T ss_pred Cchhhhhh
Confidence 45899874
No 3
>1ory_B Flagellin; flagellar chaperone, cytosolic export chaperone, FLIC, chaperone; 2.45A {Aquifex aeolicus}
Probab=6.38 E-value=1e+02 Score=18.44 Aligned_cols=13 Identities=23% Similarity=0.376 Sum_probs=1.5
Q ss_pred Ccchhhhhhhhhc
Q 034184 55 SDIQATEARIADV 67 (102)
Q Consensus 55 ~d~q~tEa~isDV 67 (102)
.++++.|+||.|+
T Consensus 5 eNl~aa~SrI~Da 17 (55)
T 1ory_B 5 DNTDNAESIIRNV 17 (55)
T ss_dssp -----------CH
T ss_pred HHHHHHHhHhhch
Confidence 4678889999886
No 4
>4gio_A Putative lipoprotein; unknown function; 1.90A {Campylobacter jejuni subsp}
Probab=5.71 E-value=2.3e+02 Score=18.58 Aligned_cols=43 Identities=12% Similarity=0.295 Sum_probs=28.1
Q ss_pred eeccccccccCCCCCCCcchhhhhhhhhccccccCCCCCcccc
Q 034184 39 MTVDQVNLQPIGDGEWSDIQATEARIADVREVAPETEGSSLDI 81 (102)
Q Consensus 39 m~~d~v~i~pvgd~EW~d~q~tEa~isDVREv~~E~e~sSLDI 81 (102)
++.+|+.+.+.+...|-.+.-..-.-.-+..|+|-++....-|
T Consensus 59 yD~~G~~v~~~~~~~W~~~~l~g~~~~~i~~vap~~~A~~fRl 101 (107)
T 4gio_A 59 LDKDGFVLRDVLNEDYQALRIPAGQEVILRKLASDTRANDFRL 101 (107)
T ss_dssp ECTTSCBCCSSCCCCCEEEEECTTCCEEEEEECSSTTCCEEEE
T ss_pred ECCCCCCcCCCCCCCCEEEEEcCCCeEEEEEECCCCCeEEEEE
Confidence 5778887777666679876554444556777777776554433
No 5
>2p6w_A VP54, putative glycosyltransferase (mannosyltransferase in glycosylating the PBCV-1 major...; HET: FLC; 1.60A {Paramecium bursaria chlorella virus 1} PDB: 2p72_A* 2p73_A*
Probab=5.07 E-value=2e+02 Score=22.19 Aligned_cols=18 Identities=39% Similarity=0.543 Sum_probs=14.5
Q ss_pred CCCCCCCCCCcCCCcccc
Q 034184 1 MDNSLPQTKDVDLSDENV 18 (102)
Q Consensus 1 ~~~s~p~tKhvD~sd~nV 18 (102)
|+-++|+.+|.|+++-|.
T Consensus 88 mnf~lPLe~yldl~~~Nl 105 (213)
T 2p6w_A 88 KNKNKPITSFIDLSDPNI 105 (213)
T ss_dssp GGTTSCGGGTCCCCCTTC
T ss_pred CCCCCcHHHccccccCce
Confidence 466889999999888774
No 6
>2fnf_X Putative RAS effector NORE1; zinc, signal transduction, apoptosis, cysteine rich domain; NMR {Mus musculus}
Probab=4.79 E-value=2.9e+02 Score=16.61 Aligned_cols=32 Identities=13% Similarity=0.041 Sum_probs=8.2
Q ss_pred hccccccCCCCCcccccccCCCCCCCCCCCCCCCCC
Q 034184 66 DVREVAPETEGSSLDIPVVSPPVNNHHEQGTNSFHQ 101 (102)
Q Consensus 66 DVREv~~E~e~sSLDIpVvs~P~~~~h~qg~~~~~q 101 (102)
|||.|...++..++. ..+...|.+..--+|.+
T Consensus 3 ~~~~~~~~~~dp~~~----~~~~~~H~F~~~~~~~~ 34 (72)
T 2fnf_X 3 DVRSIFEQPQDPRVL----AERGEGHRFVELALRGG 34 (72)
T ss_dssp -----------CCCC----GGGCSSCCCEECCCCSS
T ss_pred chhhhccCCCCcccc----cccCCCCccceeecCCC
Confidence 677776554443221 11445565554233443
No 7
>3vay_A HAD-superfamily hydrolase; rossmann fold, haloacid dehalogenase; 1.98A {Pseudomonas syringae PV}
Probab=4.64 E-value=2.1e+02 Score=17.67 Aligned_cols=14 Identities=29% Similarity=0.475 Sum_probs=12.0
Q ss_pred cCCCCCCCcchhhh
Q 034184 48 PIGDGEWSDIQATE 61 (102)
Q Consensus 48 pvgd~EW~d~q~tE 61 (102)
=|||+.|+|+++..
T Consensus 177 ~vGD~~~~Di~~a~ 190 (230)
T 3vay_A 177 HVGDHPSDDIAGAQ 190 (230)
T ss_dssp EEESCTTTTHHHHH
T ss_pred EEeCChHHHHHHHH
Confidence 48999999998877
No 8
>3clq_A Uncharacterized protein; APC29596.3, conserved protein of unknown function, enterococ faecalis V583, structural genomics, PSI-2; 2.50A {Enterococcus faecalis}
Probab=4.05 E-value=3.7e+02 Score=22.44 Aligned_cols=35 Identities=26% Similarity=0.461 Sum_probs=22.5
Q ss_pred cccccccccccCCCCceeEeeccccc--ccc--CCCCCCC
Q 034184 20 KACLSVSRAVPEPGASVVHMTVDQVN--LQP--IGDGEWS 55 (102)
Q Consensus 20 KAClS~sr~vpv~~e~vV~m~~d~v~--i~p--vgd~EW~ 55 (102)
|+.+.--+.+|- +-.|+.|+-.|++ ||- .||++|=
T Consensus 242 K~~~daA~~i~~-StiVTaMarNG~~fGIrvsGlgd~~WF 280 (421)
T 3clq_A 242 KCALDAGHNVEN-STIVTTMCRNGVEFGIRVSGIGGNHWF 280 (421)
T ss_dssp HHHHHHTCSCTT-CCBEEEEEEESSEEEEEETTTCTTCCE
T ss_pred HHHHHHhcCCCC-CeEEEEeccCCceeeEEeccCCCCceE
Confidence 334444455555 4556899999997 664 4477894
No 9
>4fbc_A Protein synthesis inhibitor I; hydrolase, ribosome inactivating protein, rRNA N-glycosylase activity, ribosome; HET: AMP; 1.70A {Hordeum vulgare} PDB: 4fba_A* 4fbb_A* 4fb9_A* 4fbh_A*
Probab=3.55 E-value=3.4e+02 Score=20.17 Aligned_cols=26 Identities=27% Similarity=0.341 Sum_probs=20.5
Q ss_pred hhhhhhccccccCCCCCcccccccCC
Q 034184 61 EARIADVREVAPETEGSSLDIPVVSP 86 (102)
Q Consensus 61 Ea~isDVREv~~E~e~sSLDIpVvs~ 86 (102)
-.-|.++|+--......+-+|||..+
T Consensus 29 ~~FI~~lR~~l~~~~~~~~giPvL~~ 54 (282)
T 4fbc_A 29 ATFIAGIRNKLRNPAHFSHNRPVLPP 54 (282)
T ss_dssp HHHHHHHHHHHCCTTCEETTEEBCCC
T ss_pred HHHHHHHHHHHhccCCccCCcccCCC
Confidence 45699999877777677789999854
No 10
>2fho_A Spliceosomal protein SF3B155; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=3.33 E-value=4.5e+02 Score=15.77 Aligned_cols=16 Identities=38% Similarity=0.632 Sum_probs=10.2
Q ss_pred CCCCCcC-----CCccccccc
Q 034184 6 PQTKDVD-----LSDENVDKA 21 (102)
Q Consensus 6 p~tKhvD-----~sd~nVDKA 21 (102)
+.-|.+| |||+.+|+-
T Consensus 10 ~~~~ei~~rnrpltDEeLD~~ 30 (47)
T 2fho_A 10 RWEREIDERNRPLSDEELDAM 30 (47)
T ss_dssp CCCCCCCCCCCCSCTTHHHHH
T ss_pred hhhhccccccCCCCHHHHHHh
Confidence 4445566 778777763
Done!