Query 034184
Match_columns 102
No_of_seqs 15 out of 17
Neff 1.9
Searched_HMMs 13730
Date Mon Mar 25 18:18:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034184.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/034184hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1eg2a_ c.66.1.11 (A:) m.RsrI 12.1 21 0.0015 22.4 -0.1 27 64-90 9-35 (279)
2 d1q40b_ d.17.4.2 (B:) NTF2-lik 9.6 27 0.0019 24.0 -0.3 12 3-15 93-104 (205)
3 d1jkgb_ d.17.4.2 (B:) NTF2-lik 8.5 39 0.0028 22.6 0.2 16 3-19 98-113 (186)
4 d1vcfa1 c.1.4.1 (A:23-332) Iso 7.2 49 0.0035 21.4 0.2 23 66-88 20-44 (310)
5 d1p0ka_ c.1.4.1 (A:) Isopenten 6.3 46 0.0033 22.2 -0.3 24 65-88 18-43 (329)
6 d1kzyc2 c.15.1.4 (C:1867-1972) 4.7 60 0.0044 20.7 -0.5 10 77-86 69-78 (106)
7 d2gycg1 a.4.7.1 (G:73-140) Rib 4.1 1.2E+02 0.0085 17.5 0.5 20 8-27 39-58 (68)
8 d1g60a_ c.66.1.11 (A:) Methylt 4.0 74 0.0054 19.3 -0.5 25 66-90 11-35 (256)
9 d1jr1a1 c.1.5.1 (A:17-112,A:23 3.9 1.3E+02 0.0095 21.6 0.8 14 75-88 41-54 (378)
10 d1w7ca2 d.17.2.1 (A:43-169) Ly 3.5 2.1E+02 0.015 18.5 1.4 20 50-71 15-34 (127)
No 1
>d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=12.12 E-value=21 Score=22.41 Aligned_cols=27 Identities=19% Similarity=0.393 Sum_probs=22.5
Q ss_pred hhhccccccCCCCCcccccccCCCCCC
Q 034184 64 IADVREVAPETEGSSLDIPVVSPPVNN 90 (102)
Q Consensus 64 isDVREv~~E~e~sSLDIpVvs~P~~~ 90 (102)
++|..|+-.+-+.+|+|+=+.+||-+.
T Consensus 9 ~~D~le~l~~l~d~SIDliitDPPYn~ 35 (279)
T d1eg2a_ 9 VCDCLDTLAKLPDDSVQLIICDPPYNI 35 (279)
T ss_dssp ECCHHHHHHTSCTTCEEEEEECCCSBC
T ss_pred echHHHHHhhCcCCCccEEEECCCCCC
Confidence 478888887888899999999999653
No 2
>d1q40b_ d.17.4.2 (B:) NTF2-like domain of mRNA export factor MEX67 {Yeast (Candida albicans) [TaxId: 5476]}
Probab=9.63 E-value=27 Score=24.02 Aligned_cols=12 Identities=33% Similarity=0.695 Sum_probs=9.9
Q ss_pred CCCCCCCCcCCCc
Q 034184 3 NSLPQTKDVDLSD 15 (102)
Q Consensus 3 ~s~p~tKhvD~sd 15 (102)
+.||.||| ||.+
T Consensus 93 ~~LPkT~H-dl~s 104 (205)
T d1q40b_ 93 QQLPKTRH-DIIA 104 (205)
T ss_dssp HTSCEEEC-CTTT
T ss_pred HHCCCCcc-cccC
Confidence 47899999 8875
No 3
>d1jkgb_ d.17.4.2 (B:) NTF2-like domain of Tip associating protein, TAP {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.52 E-value=39 Score=22.57 Aligned_cols=16 Identities=44% Similarity=0.654 Sum_probs=12.1
Q ss_pred CCCCCCCCcCCCccccc
Q 034184 3 NSLPQTKDVDLSDENVD 19 (102)
Q Consensus 3 ~s~p~tKhvD~sd~nVD 19 (102)
+.||.||| |++.--||
T Consensus 98 ~~LP~T~H-d~~sf~vD 113 (186)
T d1jkgb_ 98 NELPKTQH-DVNSFVVD 113 (186)
T ss_dssp TTSCCEEE-CGGGCEEE
T ss_pred HHCCCcee-ccccccee
Confidence 57999999 77755555
No 4
>d1vcfa1 c.1.4.1 (A:23-332) Isopentenyl-diphosphate delta-isomerase {Thermus thermophilus [TaxId: 274]}
Probab=7.20 E-value=49 Score=21.38 Aligned_cols=23 Identities=26% Similarity=0.400 Sum_probs=17.8
Q ss_pred hccccccCCC--CCcccccccCCCC
Q 034184 66 DVREVAPETE--GSSLDIPVVSPPV 88 (102)
Q Consensus 66 DVREv~~E~e--~sSLDIpVvs~P~ 88 (102)
||.||...++ |-.|.+|++..|.
T Consensus 20 d~~~vDlst~~~G~~l~~Pi~iapm 44 (310)
T d1vcfa1 20 ALSEVDLTTPFLGKTLKAPFLIGAM 44 (310)
T ss_dssp CGGGCCCCEEETTEEESSSEEECCC
T ss_pred CcccCcCCeEECCEEcCCCEEEcCh
Confidence 6777766666 8899999987774
No 5
>d1p0ka_ c.1.4.1 (A:) Isopentenyl-diphosphate delta-isomerase {Bacillus subtilis [TaxId: 1423]}
Probab=6.34 E-value=46 Score=22.18 Aligned_cols=24 Identities=17% Similarity=0.178 Sum_probs=18.1
Q ss_pred hhccccccCCC--CCcccccccCCCC
Q 034184 65 ADVREVAPETE--GSSLDIPVVSPPV 88 (102)
Q Consensus 65 sDVREv~~E~e--~sSLDIpVvs~P~ 88 (102)
-|+++|.+.++ |-.|++|+...|.
T Consensus 18 ~d~~~vdlst~i~G~~l~~Pi~is~M 43 (329)
T d1p0ka_ 18 LALEQVDISTKIGELSSSSPIFINAM 43 (329)
T ss_dssp CCGGGCBCCEEETTEEESCSEEEECC
T ss_pred CChhhCCCCEEECCEEcCCceEECCH
Confidence 37788877665 8899999976653
No 6
>d1kzyc2 c.15.1.4 (C:1867-1972) 53BP1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.74 E-value=60 Score=20.73 Aligned_cols=10 Identities=50% Similarity=0.846 Sum_probs=7.5
Q ss_pred CcccccccCC
Q 034184 77 SSLDIPVVSP 86 (102)
Q Consensus 77 sSLDIpVvs~ 86 (102)
++|+|||||+
T Consensus 69 ~~~~ipvVS~ 78 (106)
T d1kzyc2 69 EALQLPVVSQ 78 (106)
T ss_dssp HHHTCCEECH
T ss_pred HHcCCcEeeH
Confidence 4689999873
No 7
>d2gycg1 a.4.7.1 (G:73-140) Ribosomal protein L11, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=4.07 E-value=1.2e+02 Score=17.47 Aligned_cols=20 Identities=20% Similarity=0.390 Sum_probs=16.3
Q ss_pred CCCcCCCccccccccccccc
Q 034184 8 TKDVDLSDENVDKACLSVSR 27 (102)
Q Consensus 8 tKhvD~sd~nVDKAClS~sr 27 (102)
.|.-||.-.+++.||-++--
T Consensus 39 ~K~~dl~~~~l~~a~k~V~G 58 (68)
T d2gycg1 39 TKAADMTGADIEAMTRSIEG 58 (68)
T ss_dssp TTTTTCCCSSSHHHHTTTTT
T ss_pred HHhcccCCCCHHHHHHHHHh
Confidence 57889999999999987643
No 8
>d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]}
Probab=3.97 E-value=74 Score=19.35 Aligned_cols=25 Identities=24% Similarity=0.476 Sum_probs=18.5
Q ss_pred hccccccCCCCCcccccccCCCCCC
Q 034184 66 DVREVAPETEGSSLDIPVVSPPVNN 90 (102)
Q Consensus 66 DVREv~~E~e~sSLDIpVvs~P~~~ 90 (102)
|-.|+-.+-+.+|+|.=+.+||-+.
T Consensus 11 Dcle~l~~lpd~sVdliitdPPY~~ 35 (256)
T d1g60a_ 11 NCFDFLDQVENKSVQLAVIDPPYNL 35 (256)
T ss_dssp CHHHHHHHSCTTCEEEEEECCCCSS
T ss_pred cHHHHHhhCcCCCcCEEEECCCCCC
Confidence 4556555566789999999999654
No 9
>d1jr1a1 c.1.5.1 (A:17-112,A:233-514) Inosine monophosphate dehydrogenase (IMPDH) {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}
Probab=3.90 E-value=1.3e+02 Score=21.61 Aligned_cols=14 Identities=36% Similarity=0.674 Sum_probs=11.6
Q ss_pred CCCcccccccCCCC
Q 034184 75 EGSSLDIPVVSPPV 88 (102)
Q Consensus 75 e~sSLDIpVvs~P~ 88 (102)
+.-+|+||+++.|-
T Consensus 41 ~~~~l~iPIIsApM 54 (378)
T d1jr1a1 41 KKITLKTPLVSSPM 54 (378)
T ss_dssp SSCEESSCEEECCC
T ss_pred CCccCCCCEEECCC
Confidence 66799999998774
No 10
>d1w7ca2 d.17.2.1 (A:43-169) Lysyl oxidase PplO, domains 1 and 2 {Yeast (Pichia pastoris) [TaxId: 4922]}
Probab=3.52 E-value=2.1e+02 Score=18.46 Aligned_cols=20 Identities=15% Similarity=0.478 Sum_probs=16.6
Q ss_pred CCCCCCcchhhhhhhhhccccc
Q 034184 50 GDGEWSDIQATEARIADVREVA 71 (102)
Q Consensus 50 gd~EW~d~q~tEa~isDVREv~ 71 (102)
-.+-|.++..-| +++||+.-
T Consensus 15 k~nv~adLt~~E--~~aV~~~L 34 (127)
T d1w7ca2 15 KTNIWTSLAKEE--VQEVLDLL 34 (127)
T ss_dssp SCCTTCCCCHHH--HHHHHHHH
T ss_pred cccccccCCHHH--HHHHHHHH
Confidence 347899999999 99998764
Done!