BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 034185
(102 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3CI9|A Chain A, Crystal Structure Of The Human Hsbp1
pdb|3CI9|B Chain B, Crystal Structure Of The Human Hsbp1
Length = 48
Score = 54.7 bits (130), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 26/48 (54%), Positives = 38/48 (79%), Gaps = 1/48 (2%)
Query: 22 PKQSTADMTVFVQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSI 69
PK + D+T VQ LLQQMQ +FQT+SD I+ +ID+M +RI++LE++I
Sbjct: 1 PK-TVQDLTSVVQTLLQQMQDKFQTISDQIIGRIDDMSSRIDDLEKNI 47
>pdb|2WZ1|A Chain A, Structure Of The Catalytic Domain Of Human Soluble
Guanylate Cyclase 1 Beta 3.
pdb|2WZ1|B Chain B, Structure Of The Catalytic Domain Of Human Soluble
Guanylate Cyclase 1 Beta 3
Length = 219
Score = 27.7 bits (60), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 31/66 (46%), Gaps = 17/66 (25%)
Query: 23 KQSTADMTVFVQNLLQQMQSRFQTMSDS----IVTKIDEMGNRINELEQSINDLRAEMGV 78
K ++ + + + NLL + +RF T++DS V K++ +G++ M V
Sbjct: 29 KHASGEGAMKIVNLLNDLYTRFDTLTDSRKNPFVYKVETVGDKY-------------MTV 75
Query: 79 EGSPSP 84
G P P
Sbjct: 76 SGLPEP 81
>pdb|1WGF|A Chain A, Solution Structure Of The 4th Hmg-Box Of Mouse Ubf1
Length = 90
Score = 26.2 bits (56), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 19 SEDPKQSTADMTVFVQNLLQQMQSRFQTMSDSIVTK-IDEMGNRINELEQSINDLR 73
SE PK+ + M +F + +Q+Q +S+S +T+ + M N ++E +++ R
Sbjct: 18 SEKPKRPVSAMFIFSEEKRRQLQEERPELSESELTRLLARMWNDLSEKKKAKYKAR 73
>pdb|4FQK|B Chain B, Influenza BBRISBANE602008 HEMAGGLUTININ FAB CR8059
COMPLEX
pdb|4FQK|D Chain D, Influenza BBRISBANE602008 HEMAGGLUTININ FAB CR8059
COMPLEX
pdb|4FQM|B Chain B, Structure Of BBRISBANE602008 INFLUENZA HEMAGGLUTININ
pdb|4FQM|D Chain D, Structure Of BBRISBANE602008 INFLUENZA HEMAGGLUTININ
pdb|4FQM|F Chain F, Structure Of BBRISBANE602008 INFLUENZA HEMAGGLUTININ
pdb|4FQM|H Chain H, Structure Of BBRISBANE602008 INFLUENZA HEMAGGLUTININ
pdb|4FQM|J Chain J, Structure Of BBRISBANE602008 INFLUENZA HEMAGGLUTININ
pdb|4FQM|L Chain L, Structure Of BBRISBANE602008 INFLUENZA HEMAGGLUTININ
Length = 179
Score = 25.8 bits (55), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 10/21 (47%), Positives = 17/21 (80%)
Query: 55 IDEMGNRINELEQSINDLRAE 75
+DE+ N I EL++ ++DLRA+
Sbjct: 70 MDELHNEILELDEKVDDLRAD 90
>pdb|2RFT|B Chain B, Crystal Structure Of Influenza B Virus Hemagglutinin In
Complex With Lsta Receptor Analog
pdb|2RFU|B Chain B, Crystal Structure Of Influenza B Virus Hemagglutinin In
Complex With Lstc Receptor Analog
Length = 176
Score = 25.8 bits (55), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 10/21 (47%), Positives = 17/21 (80%)
Query: 55 IDEMGNRINELEQSINDLRAE 75
+DE+ N I EL++ ++DLRA+
Sbjct: 70 MDELHNEILELDEKVDDLRAD 90
>pdb|3BT6|B Chain B, Crystal Structure Of Influenza B Virus Hemagglutinin
Length = 169
Score = 25.8 bits (55), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 10/21 (47%), Positives = 17/21 (80%)
Query: 55 IDEMGNRINELEQSINDLRAE 75
+DE+ N I EL++ ++DLRA+
Sbjct: 70 MDELHNEILELDEKVDDLRAD 90
>pdb|2L7B|A Chain A, Nmr Structure Of Full Length Apoe3
Length = 307
Score = 25.4 bits (54), Expect = 7.9, Method: Composition-based stats.
Identities = 11/43 (25%), Positives = 28/43 (65%), Gaps = 4/43 (9%)
Query: 38 QQMQSRFQTMSDSIVTKIDEMG----NRINELEQSINDLRAEM 76
Q +Q R Q + + +++EMG +R++E+++ + ++RA++
Sbjct: 209 QPLQERAQAWGERLRARMEEMGSRTRDRLDEVKEQVAEVRAKL 251
>pdb|2C9I|A Chain A, Structure Of The Fluorescent Protein Asfp499 From Anemonia
Sulcata
pdb|2C9I|B Chain B, Structure Of The Fluorescent Protein Asfp499 From Anemonia
Sulcata
pdb|2C9I|C Chain C, Structure Of The Fluorescent Protein Asfp499 From Anemonia
Sulcata
pdb|2C9I|D Chain D, Structure Of The Fluorescent Protein Asfp499 From Anemonia
Sulcata
pdb|2C9I|E Chain E, Structure Of The Fluorescent Protein Asfp499 From Anemonia
Sulcata
pdb|2C9I|F Chain F, Structure Of The Fluorescent Protein Asfp499 From Anemonia
Sulcata
pdb|2C9I|G Chain G, Structure Of The Fluorescent Protein Asfp499 From Anemonia
Sulcata
pdb|2C9I|H Chain H, Structure Of The Fluorescent Protein Asfp499 From Anemonia
Sulcata
Length = 226
Score = 25.4 bits (54), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 72 LRAEMGVEGSPSPLTPSKTNSGEGKPEEGS 101
+R ++ +EGS + T GEGKP EG+
Sbjct: 9 MRVQLSMEGSVNYHAFKCTGKGEGKPYEGT 38
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.312 0.128 0.373
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,120,912
Number of Sequences: 62578
Number of extensions: 101438
Number of successful extensions: 302
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 291
Number of HSP's gapped (non-prelim): 16
length of query: 102
length of database: 14,973,337
effective HSP length: 67
effective length of query: 35
effective length of database: 10,780,611
effective search space: 377321385
effective search space used: 377321385
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 45 (21.9 bits)