BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 034185
(102 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O75506|HSBP1_HUMAN Heat shock factor-binding protein 1 OS=Homo sapiens GN=HSBP1 PE=1
SV=1
Length = 76
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 33/59 (55%), Positives = 45/59 (76%), Gaps = 1/59 (1%)
Query: 21 DPKQSTADMTVFVQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDLRAEMGVE 79
DPK + D+T VQ LLQQMQ +FQTMSD I+ +ID+M +RI++LE++I DL + GVE
Sbjct: 5 DPK-TVQDLTSVVQTLLQQMQDKFQTMSDQIIGRIDDMSSRIDDLEKNIADLMTQAGVE 62
>sp|Q3ZC22|HSBP1_BOVIN Heat shock factor-binding protein 1 OS=Bos taurus GN=HSBP1 PE=3
SV=1
Length = 76
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 33/59 (55%), Positives = 45/59 (76%), Gaps = 1/59 (1%)
Query: 21 DPKQSTADMTVFVQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDLRAEMGVE 79
DPK + D+T VQ LLQQMQ +FQTMSD I+ +ID+M +RI++LE++I DL + GVE
Sbjct: 5 DPK-TVQDLTSVVQTLLQQMQDKFQTMSDQIIGRIDDMSSRIDDLEKNIADLMTQAGVE 62
>sp|Q5RDI2|HSBP1_PONAB Heat shock factor-binding protein 1 OS=Pongo abelii GN=HSBP1 PE=3
SV=1
Length = 76
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 33/59 (55%), Positives = 45/59 (76%), Gaps = 1/59 (1%)
Query: 21 DPKQSTADMTVFVQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDLRAEMGVE 79
DPK + D+T VQ LLQQMQ +FQTMSD I+ +ID+M +RI++LE++I DL + GVE
Sbjct: 5 DPK-TVQDLTSVVQTLLQQMQDKFQTMSDQIIGRIDDMSSRIDDLEKNIADLMTQAGVE 62
>sp|Q8K3X8|HSBP1_RAT Heat shock factor-binding protein 1 OS=Rattus norvegicus GN=Hsbp1
PE=3 SV=1
Length = 76
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 31/59 (52%), Positives = 45/59 (76%), Gaps = 1/59 (1%)
Query: 21 DPKQSTADMTVFVQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDLRAEMGVE 79
DPK + D+T+ V+ LLQQMQ +FQ MSD I+ +ID+M +RI++LE++I DL + GVE
Sbjct: 5 DPK-TMQDITLVVETLLQQMQDKFQIMSDQIIGRIDDMSSRIDDLEKNIADLMTQAGVE 62
>sp|Q9CQZ1|HSBP1_MOUSE Heat shock factor-binding protein 1 OS=Mus musculus GN=Hsbp1 PE=2
SV=1
Length = 76
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 31/59 (52%), Positives = 45/59 (76%), Gaps = 1/59 (1%)
Query: 21 DPKQSTADMTVFVQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDLRAEMGVE 79
DPK + D+T+ V+ LLQQMQ +FQ MSD I+ +ID+M +RI++LE++I DL + GVE
Sbjct: 5 DPK-TMQDITLVVETLLQQMQDKFQIMSDQIIGRIDDMSSRIDDLEKNIADLMTQAGVE 62
>sp|D4A9E1|HSBPL_RAT Heat shock factor-binding protein 1-like protein 1 OS=Rattus
norvegicus GN=Hsbp1l1 PE=3 SV=1
Length = 72
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 38/49 (77%)
Query: 33 VQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDLRAEMGVEGS 81
+NLLQ+++ FQ ++ ++ +++EMGNRI +L+++++DL A+ G+E S
Sbjct: 18 AENLLQEVEEHFQALTATLNLRMEEMGNRIEDLQRNVDDLMAQAGIENS 66
>sp|C9JCN9|HSBPL_HUMAN Heat shock factor-binding protein 1-like protein 1 OS=Homo
sapiens GN=HSBP1L1 PE=3 SV=2
Length = 74
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 35/49 (71%)
Query: 33 VQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDLRAEMGVEGS 81
+NL Q++Q FQ ++ ++ +++EMGNRI +L++++ DL + G+E S
Sbjct: 18 AENLFQELQEHFQALTATLNLRMEEMGNRIEDLQKNVKDLMVQAGIENS 66
>sp|B2RXB2|HSBPL_MOUSE Heat shock factor-binding protein 1-like protein 1 OS=Mus
musculus GN=Hsbp1l1 PE=3 SV=1
Length = 72
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 36/49 (73%)
Query: 33 VQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDLRAEMGVEGS 81
+NLL +++ FQ ++ ++ +++EMG+RI +L+++++DL + G+E S
Sbjct: 18 AENLLLEVEEHFQALTTTLNLRMEEMGSRIEDLQRNVDDLMTQAGIENS 66
>sp|O14330|YB7F_SCHPO Uncharacterized protein C16E9.15 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPBC16E9.15 PE=3 SV=1
Length = 75
Score = 37.4 bits (85), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 40/69 (57%), Gaps = 4/69 (5%)
Query: 18 DSEDPKQSTADMTVFVQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDLRAEMG 77
+S++P QST+ +T LL+ + F+T+ K++ M R+++LE+S +R M
Sbjct: 8 NSKNP-QSTSAITTLTDKLLEDISGDFETLQKQFSEKLETMSTRLDQLEES---MREAMN 63
Query: 78 VEGSPSPLT 86
+ S SP+T
Sbjct: 64 KKSSVSPVT 72
>sp|Q7PC83|AB41G_ARATH ABC transporter G family member 41 OS=Arabidopsis thaliana
GN=ABCG41 PE=2 SV=1
Length = 1397
Score = 32.3 bits (72), Expect = 0.98, Method: Composition-based stats.
Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 7/76 (9%)
Query: 16 GHDSED----PKQSTADMTVFVQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSIND 71
G DS D K A+ + ++ L++Q+++ + I +IDE+G + +E ND
Sbjct: 54 GDDSSDIIDVTKLEDAERRLLIEKLVKQIEADNLRLLRKIRKRIDEVGIELPTVEVRFND 113
Query: 72 LRAEMG---VEGSPSP 84
L E V G P P
Sbjct: 114 LSVEAECQVVHGKPIP 129
>sp|Q2TFN9|HSP74_CANFA Heat shock 70 kDa protein 4 OS=Canis familiaris GN=HSPA4 PE=1 SV=1
Length = 840
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 35/66 (53%), Gaps = 5/66 (7%)
Query: 8 NWLLFWQDGHDSEDPKQSTADMTVFVQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQ 67
NWL ++DG D PKQ D ++NL Q ++ RFQ S+ +E+G +I + +
Sbjct: 657 NWL--YEDGEDQ--PKQVYVDKLAELKNLGQPIKMRFQE-SEERPKLFEELGKQIQQYMK 711
Query: 68 SINDLR 73
I+ +
Sbjct: 712 VISSFK 717
>sp|Q5RDM4|HSP74_PONAB Heat shock 70 kDa protein 4 OS=Pongo abelii GN=HSPA4 PE=2 SV=1
Length = 840
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 35/66 (53%), Gaps = 5/66 (7%)
Query: 8 NWLLFWQDGHDSEDPKQSTADMTVFVQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQ 67
NWL ++DG D PKQ D ++NL Q ++ RFQ S+ +E+G +I + +
Sbjct: 657 NWL--YEDGEDQ--PKQVYVDKLAELKNLGQPIKIRFQE-SEERPKLFEELGKQIQQYMK 711
Query: 68 SINDLR 73
I+ +
Sbjct: 712 IISSFK 717
>sp|P34932|HSP74_HUMAN Heat shock 70 kDa protein 4 OS=Homo sapiens GN=HSPA4 PE=1 SV=4
Length = 840
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 35/66 (53%), Gaps = 5/66 (7%)
Query: 8 NWLLFWQDGHDSEDPKQSTADMTVFVQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQ 67
NWL ++DG D PKQ D ++NL Q ++ RFQ S+ +E+G +I + +
Sbjct: 657 NWL--YEDGEDQ--PKQVYVDKLAELKNLGQPIKIRFQE-SEERPKLFEELGKQIQQYMK 711
Query: 68 SINDLR 73
I+ +
Sbjct: 712 IISSFK 717
>sp|Q61316|HSP74_MOUSE Heat shock 70 kDa protein 4 OS=Mus musculus GN=Hspa4 PE=1 SV=1
Length = 841
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 36/66 (54%), Gaps = 5/66 (7%)
Query: 8 NWLLFWQDGHDSEDPKQSTADMTVFVQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQ 67
NWL ++DG D PKQ D +++L Q +++RFQ S+ +E+G +I + +
Sbjct: 658 NWL--YEDGEDQ--PKQVYVDKLAELKSLGQPIKTRFQE-SEERPKLFEELGKQIQQYMK 712
Query: 68 SINDLR 73
I+ +
Sbjct: 713 VISSFK 718
>sp|O88600|HSP74_RAT Heat shock 70 kDa protein 4 OS=Rattus norvegicus GN=Hspa4 PE=1 SV=1
Length = 840
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 5/66 (7%)
Query: 8 NWLLFWQDGHDSEDPKQSTADMTVFVQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQ 67
NWL ++DG D PKQ D ++ L Q +++RFQ S+ +E+G +I + +
Sbjct: 657 NWL--YEDGEDQ--PKQVYVDKLAELRTLGQPIKTRFQE-SEERPKLFEELGKQIQQYMK 711
Query: 68 SINDLR 73
I+ +
Sbjct: 712 VISSFK 717
>sp|Q7SEQ9|COQ4_NEUCR Ubiquinone biosynthesis protein coq-4, mitochondrial OS=Neurospora
crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 /
DSM 1257 / FGSC 987) GN=coq-4 PE=2 SV=1
Length = 347
Score = 30.4 bits (67), Expect = 3.7, Method: Composition-based stats.
Identities = 12/19 (63%), Positives = 15/19 (78%)
Query: 64 ELEQSINDLRAEMGVEGSP 82
ELE+ +NDLR E+GVE P
Sbjct: 261 ELERDVNDLRRELGVEPPP 279
>sp|P02650|APOE_RAT Apolipoprotein E OS=Rattus norvegicus GN=Apoe PE=1 SV=2
Length = 312
Score = 29.6 bits (65), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 35/61 (57%), Gaps = 7/61 (11%)
Query: 20 EDPKQSTADMTVFVQNLLQQMQSRFQTMSDSIVTKIDEMGN----RINELEQSINDLRAE 75
E +Q TA++ Q ++ R Q +SD I +++E+GN R+ E+ + + ++R++
Sbjct: 196 EQGRQRTANLGA---GAAQPLRDRAQALSDRIRGRLEEVGNQARDRLEEVREQMEEVRSK 252
Query: 76 M 76
M
Sbjct: 253 M 253
>sp|Q7PC82|AB42G_ARATH ABC transporter G family member 42 OS=Arabidopsis thaliana
GN=ABCG42 PE=2 SV=1
Length = 1392
Score = 29.6 bits (65), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Query: 28 DMTVFVQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDLRAEM---GVEGSPSP 84
D +F+ +L++ +++ + I +IDE+G + ++E +DL E V G P P
Sbjct: 72 DRRLFIDDLIRHVENDNHVLLQKIRKRIDEVGIDLPKIEARFSDLFVEAECEVVYGKPIP 131
>sp|Q80SU4|IFNAD_MOUSE Interferon alpha-13 OS=Mus musculus GN=Ifna13 PE=2 SV=1
Length = 189
Score = 29.6 bits (65), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 38/75 (50%), Gaps = 6/75 (8%)
Query: 12 FWQDGHDSEDPKQSTADMTVFVQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSIND 71
F Q+ D++ K++ A FV L QQ+ + F + S + + N+L Q +ND
Sbjct: 61 FPQEKVDAQQIKKAQA--IPFVHELTQQILTLFTSNDSSAAWNATLLDSFCNDLHQQLND 118
Query: 72 LRA----EMGVEGSP 82
L+A ++GV+ P
Sbjct: 119 LKACLMQQVGVQEFP 133
>sp|P04661|HEMA_I56A2 Hemagglutinin OS=Influenza A virus (strain A/Duck/England/1/1956
H11N6) GN=HA PE=3 SV=3
Length = 565
Score = 29.3 bits (64), Expect = 6.8, Method: Composition-based stats.
Identities = 14/54 (25%), Positives = 30/54 (55%), Gaps = 4/54 (7%)
Query: 18 DSEDPKQSTADMTVFVQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSIND 71
D E +++ +T V N++ +M + F+ S+ + E+ RIN+L + ++D
Sbjct: 379 DKESTQKAIDQITSKVNNIVDRMNTNFE----SVQHEFSEIEERINQLSKHVDD 428
>sp|Q6BPZ9|NDC80_DEBHA Probable kinetochore protein NDC80 OS=Debaryomyces hansenii (strain
ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968)
GN=NDC80 PE=3 SV=2
Length = 650
Score = 29.3 bits (64), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 25/40 (62%)
Query: 39 QMQSRFQTMSDSIVTKIDEMGNRINELEQSINDLRAEMGV 78
+M+SRF ++++I+ I+ + N NEL N+L ++ +
Sbjct: 276 EMKSRFDELNNNIIQDIENISNENNELLNQYNELNGQLDI 315
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.312 0.128 0.373
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,127,661
Number of Sequences: 539616
Number of extensions: 1332743
Number of successful extensions: 5020
Number of sequences better than 100.0: 42
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 4976
Number of HSP's gapped (non-prelim): 63
length of query: 102
length of database: 191,569,459
effective HSP length: 71
effective length of query: 31
effective length of database: 153,256,723
effective search space: 4750958413
effective search space used: 4750958413
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.8 bits)