Query 034185
Match_columns 102
No_of_seqs 100 out of 147
Neff 3.2
Searched_HMMs 46136
Date Fri Mar 29 10:43:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034185.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/034185hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4117 Heat shock factor bind 100.0 8.5E-32 1.8E-36 181.1 8.7 65 18-83 7-71 (73)
2 PF06825 HSBP1: Heat shock fac 100.0 1.7E-29 3.7E-34 161.6 5.4 54 26-79 1-54 (54)
3 COG3937 Uncharacterized conser 95.2 0.13 2.9E-06 37.3 7.2 53 23-75 38-105 (108)
4 PF10393 Matrilin_ccoil: Trime 93.9 0.19 4.1E-06 31.5 4.9 19 51-69 28-46 (47)
5 PF01601 Corona_S2: Coronaviru 91.4 0.25 5.4E-06 44.5 4.0 41 30-74 286-328 (610)
6 PF05597 Phasin: Poly(hydroxya 91.3 1.2 2.6E-05 32.7 6.8 48 27-74 75-130 (132)
7 PRK13729 conjugal transfer pil 90.9 0.63 1.4E-05 40.8 5.8 70 7-76 29-120 (475)
8 PF06705 SF-assemblin: SF-asse 90.6 1.6 3.5E-05 33.5 7.3 46 30-75 69-114 (247)
9 PF10046 BLOC1_2: Biogenesis o 90.3 2.3 4.9E-05 29.1 7.1 45 27-72 41-85 (99)
10 TIGR01834 PHA_synth_III_E poly 89.3 2.1 4.7E-05 35.7 7.5 43 35-77 263-313 (320)
11 PF07304 SRA1: Steroid recepto 88.5 0.9 2E-05 33.6 4.3 43 29-71 40-83 (157)
12 PF14261 DUF4351: Domain of un 87.8 0.56 1.2E-05 29.9 2.5 41 32-74 8-48 (59)
13 PF10779 XhlA: Haemolysin XhlA 86.8 1.5 3.2E-05 28.3 4.1 31 38-72 2-32 (71)
14 PRK13182 racA polar chromosome 86.2 5.7 0.00012 30.2 7.6 38 37-75 101-146 (175)
15 PF04513 Baculo_PEP_C: Baculov 85.6 5.7 0.00012 29.8 7.2 45 31-75 34-78 (140)
16 PF05377 FlaC_arch: Flagella a 85.5 3 6.5E-05 27.0 5.0 36 39-74 4-42 (55)
17 PF15070 GOLGA2L5: Putative go 85.5 6.3 0.00014 35.3 8.6 45 38-82 25-72 (617)
18 TIGR01837 PHA_granule_1 poly(h 85.1 4.9 0.00011 28.5 6.4 19 55-73 98-116 (118)
19 PF10158 LOH1CR12: Tumour supp 84.9 7.6 0.00017 28.4 7.5 49 26-75 58-109 (131)
20 PF01519 DUF16: Protein of unk 84.6 1.7 3.8E-05 31.2 3.9 21 46-66 81-101 (102)
21 PF04344 CheZ: Chemotaxis phos 83.6 1.4 3E-05 34.0 3.3 37 44-83 129-165 (214)
22 PF04380 BMFP: Membrane fusoge 82.6 8.1 0.00017 25.7 6.3 18 56-73 60-77 (79)
23 PF06008 Laminin_I: Laminin Do 81.9 9.5 0.00021 29.5 7.4 64 11-74 136-206 (264)
24 PF05531 NPV_P10: Nucleopolyhe 80.6 8.3 0.00018 26.3 5.9 47 33-80 23-69 (75)
25 PF00509 Hemagglutinin: Haemag 80.4 0.24 5.2E-06 44.1 -2.1 45 26-74 373-417 (550)
26 KOG3759 Uncharacterized RUN do 79.9 16 0.00035 33.1 8.9 56 21-80 199-254 (621)
27 PF07889 DUF1664: Protein of u 79.3 15 0.00032 27.0 7.2 52 23-74 38-89 (126)
28 TIGR02135 phoU_full phosphate 77.6 20 0.00044 25.1 7.3 50 25-74 117-166 (212)
29 PF09712 PHA_synth_III_E: Poly 77.5 13 0.00028 30.0 7.1 36 37-72 248-291 (293)
30 PF13747 DUF4164: Domain of un 76.3 11 0.00024 25.7 5.6 40 32-72 5-44 (89)
31 KOG0804 Cytoplasmic Zn-finger 76.2 12 0.00025 33.4 6.9 50 25-74 372-449 (493)
32 PF04513 Baculo_PEP_C: Baculov 76.0 21 0.00045 26.8 7.3 48 28-75 49-100 (140)
33 PF06705 SF-assemblin: SF-asse 76.0 13 0.00029 28.5 6.5 47 28-77 63-109 (247)
34 PRK00420 hypothetical protein; 75.8 2.2 4.7E-05 30.8 2.0 40 29-68 67-107 (112)
35 PF04508 Pox_A_type_inc: Viral 75.6 3.6 7.9E-05 22.6 2.4 19 55-73 3-21 (23)
36 PF10805 DUF2730: Protein of u 75.2 16 0.00034 25.4 6.1 41 35-75 49-94 (106)
37 PRK09841 cryptic autophosphory 73.8 15 0.00033 32.6 7.1 64 17-80 234-301 (726)
38 PHA03332 membrane glycoprotein 73.6 11 0.00023 37.0 6.4 49 26-74 900-951 (1328)
39 PF10158 LOH1CR12: Tumour supp 73.0 19 0.00041 26.3 6.4 48 30-77 26-73 (131)
40 PF09903 DUF2130: Uncharacteri 73.0 21 0.00045 28.7 7.2 48 26-73 186-236 (267)
41 PRK10884 SH3 domain-containing 72.7 22 0.00047 27.6 7.0 51 25-75 90-140 (206)
42 PRK14127 cell division protein 72.6 32 0.00069 24.7 7.3 42 33-78 28-69 (109)
43 PF06825 HSBP1: Heat shock fac 72.3 12 0.00027 23.9 4.7 35 39-73 7-41 (54)
44 PF00170 bZIP_1: bZIP transcri 72.1 21 0.00045 22.1 6.0 37 35-75 26-62 (64)
45 PF02994 Transposase_22: L1 tr 71.2 4.3 9.4E-05 33.6 3.0 24 50-73 141-164 (370)
46 PF05440 MtrB: Tetrahydrometha 71.1 6.4 0.00014 28.0 3.5 32 54-85 31-62 (97)
47 KOG4117 Heat shock factor bind 70.9 20 0.00044 24.5 5.7 39 28-66 23-61 (73)
48 KOG4559 Uncharacterized conser 70.8 25 0.00054 26.0 6.6 45 27-72 68-115 (120)
49 PF11074 DUF2779: Domain of un 70.4 15 0.00033 26.5 5.3 38 30-73 58-105 (130)
50 PF04102 SlyX: SlyX; InterPro 69.7 22 0.00047 22.9 5.5 21 57-77 29-49 (69)
51 PRK00965 tetrahydromethanopter 69.4 6.8 0.00015 27.9 3.3 31 55-85 33-63 (96)
52 PF07439 DUF1515: Protein of u 69.3 22 0.00048 26.1 6.0 27 49-75 36-62 (112)
53 PF05929 Phage_GPO: Phage caps 68.4 47 0.001 27.2 8.3 57 25-81 193-256 (276)
54 PF04546 Sigma70_ner: Sigma-70 67.0 5 0.00011 30.2 2.3 48 32-79 107-161 (211)
55 PF15207 TMEM240: TMEM240 fami 66.8 2.4 5.1E-05 33.0 0.6 12 5-16 98-109 (180)
56 PF12841 YvrJ: YvrJ protein fa 66.7 6.8 0.00015 23.5 2.4 17 58-74 20-36 (38)
57 PRK00286 xseA exodeoxyribonucl 66.1 40 0.00087 27.8 7.6 45 29-73 321-370 (438)
58 PF07889 DUF1664: Protein of u 66.0 33 0.00072 25.1 6.4 44 28-75 40-83 (126)
59 PRK11546 zraP zinc resistance 65.2 52 0.0011 24.7 7.4 51 26-76 45-105 (143)
60 PF11101 DUF2884: Protein of u 64.9 28 0.0006 27.0 6.1 50 25-74 168-217 (229)
61 TIGR03017 EpsF chain length de 64.3 44 0.00095 27.0 7.4 66 17-82 138-207 (444)
62 PF00103 Hormone_1: Somatotrop 63.8 21 0.00046 27.3 5.3 53 25-77 89-151 (214)
63 COG5570 Uncharacterized small 63.5 8.9 0.00019 25.2 2.7 30 51-80 3-32 (57)
64 PHA03386 P10 fibrous body prot 62.8 54 0.0012 23.5 7.9 32 52-83 35-66 (94)
65 PF14071 YlbD_coat: Putative c 62.6 14 0.0003 27.4 3.9 26 56-81 80-108 (124)
66 PF02646 RmuC: RmuC family; I 62.4 29 0.00063 27.8 6.0 41 32-76 237-277 (304)
67 PF04102 SlyX: SlyX; InterPro 61.9 40 0.00087 21.7 6.7 26 53-78 32-57 (69)
68 PF06937 EURL: EURL protein; 61.7 18 0.0004 30.2 4.8 38 24-62 219-256 (285)
69 PRK04406 hypothetical protein; 61.1 8.1 0.00017 25.8 2.3 17 60-76 39-55 (75)
70 PF13887 MRF_C1: Myelin gene r 60.2 6.3 0.00014 23.8 1.5 12 56-67 24-35 (36)
71 KOG0500 Cyclic nucleotide-gate 59.8 60 0.0013 29.4 8.0 56 18-73 451-506 (536)
72 PF01895 PhoU: PhoU domain; I 59.6 36 0.00078 20.4 6.5 45 28-72 3-47 (88)
73 cd00632 Prefoldin_beta Prefold 59.5 52 0.0011 22.2 6.1 20 53-72 77-96 (105)
74 PF01920 Prefoldin_2: Prefoldi 59.3 32 0.00069 22.2 4.9 36 38-73 1-39 (106)
75 TIGR00414 serS seryl-tRNA synt 59.1 82 0.0018 26.5 8.4 56 37-92 46-120 (418)
76 PRK11166 chemotaxis regulator 59.1 43 0.00093 26.6 6.4 32 44-78 141-172 (214)
77 PRK00846 hypothetical protein; 59.1 20 0.00044 24.3 4.0 20 58-77 39-58 (77)
78 PRK06771 hypothetical protein; 59.0 24 0.00053 25.0 4.5 25 58-82 28-52 (93)
79 PF07400 IL11: Interleukin 11; 58.8 24 0.00051 28.2 4.8 37 53-89 124-162 (199)
80 TIGR02135 phoU_full phosphate 58.5 53 0.0012 22.9 6.2 47 26-72 14-60 (212)
81 smart00338 BRLZ basic region l 58.2 42 0.00091 20.7 5.3 36 36-75 27-62 (65)
82 PF15136 UPF0449: Uncharacteri 57.7 22 0.00048 25.3 4.1 32 40-71 65-96 (97)
83 KOG0810 SNARE protein Syntaxin 57.6 19 0.00041 29.6 4.3 11 62-72 208-218 (297)
84 PRK11115 transcriptional regul 57.5 55 0.0012 24.1 6.4 51 26-76 25-75 (236)
85 PF03670 UPF0184: Uncharacteri 57.4 20 0.00043 24.9 3.8 30 45-74 32-61 (83)
86 PF03500 Cellsynth_D: Cellulos 56.1 61 0.0013 24.5 6.5 45 30-77 2-59 (144)
87 PLN02678 seryl-tRNA synthetase 56.0 96 0.0021 26.8 8.4 54 37-92 49-122 (448)
88 TIGR03007 pepcterm_ChnLen poly 55.9 31 0.00067 28.5 5.3 63 17-79 128-194 (498)
89 PF10975 DUF2802: Protein of u 55.7 12 0.00025 24.7 2.3 19 58-76 3-21 (70)
90 PF03105 SPX: SPX domain; Int 55.6 77 0.0017 22.9 7.4 50 28-77 88-137 (275)
91 cd00890 Prefoldin Prefoldin is 55.4 38 0.00082 22.6 4.9 16 26-41 85-100 (129)
92 PF10393 Matrilin_ccoil: Trime 55.2 48 0.001 20.7 4.9 31 28-62 16-46 (47)
93 PHA03395 p10 fibrous body prot 54.8 72 0.0016 22.4 6.8 57 33-90 23-79 (87)
94 PF12462 Helicase_IV_N: DNA he 54.3 55 0.0012 24.2 5.9 42 26-67 75-116 (166)
95 PF15134 DUF4570: Domain of un 53.5 78 0.0017 23.0 6.4 44 27-70 16-69 (109)
96 COG2960 Uncharacterized protei 53.5 84 0.0018 22.8 6.7 39 39-77 37-90 (103)
97 PF00517 GP41: Retroviral enve 53.4 65 0.0014 24.7 6.4 38 37-74 30-67 (204)
98 TIGR02976 phageshock_pspB phag 53.2 21 0.00045 24.1 3.2 21 50-70 46-66 (75)
99 PF04799 Fzo_mitofusin: fzo-li 52.8 33 0.00072 26.5 4.7 13 54-66 128-140 (171)
100 PF03980 Nnf1: Nnf1 ; InterPr 52.4 70 0.0015 21.6 7.6 20 56-75 30-49 (109)
101 COG4575 ElaB Uncharacterized c 52.3 59 0.0013 23.5 5.6 44 22-65 35-78 (104)
102 PRK09706 transcriptional repre 52.2 30 0.00064 24.0 4.0 40 38-77 90-130 (135)
103 TIGR02338 gimC_beta prefoldin, 52.0 74 0.0016 21.7 6.6 22 53-74 88-109 (110)
104 PF03310 Cauli_DNA-bind: Cauli 51.0 48 0.001 24.5 5.1 32 44-75 35-69 (121)
105 PF05565 Sipho_Gp157: Siphovir 50.9 97 0.0021 22.7 7.3 26 57-82 72-97 (162)
106 COG1322 Predicted nuclease of 50.7 38 0.00083 29.4 5.2 46 26-71 104-150 (448)
107 PRK03100 sec-independent trans 50.6 75 0.0016 23.6 6.1 46 26-72 23-69 (136)
108 PRK11519 tyrosine kinase; Prov 50.5 84 0.0018 28.0 7.4 64 17-80 234-301 (719)
109 PF08776 VASP_tetra: VASP tetr 50.1 59 0.0013 20.0 5.7 30 26-55 2-31 (40)
110 PF05537 DUF759: Borrelia burg 48.8 51 0.0011 29.0 5.7 30 62-92 398-427 (431)
111 PF11855 DUF3375: Protein of u 48.2 63 0.0014 27.6 6.1 70 5-74 71-165 (478)
112 PF02524 KID: KID repeat; Int 48.0 5.8 0.00013 18.6 -0.0 10 61-70 1-10 (11)
113 PF10267 Tmemb_cc2: Predicted 47.9 1.1E+02 0.0025 26.2 7.6 38 37-74 235-272 (395)
114 cd00632 Prefoldin_beta Prefold 47.8 84 0.0018 21.1 6.7 20 53-72 84-103 (105)
115 PF02865 STAT_int: STAT protei 47.7 45 0.00097 23.9 4.4 31 25-55 52-84 (124)
116 PF13864 Enkurin: Calmodulin-b 47.6 85 0.0018 21.1 5.9 46 27-72 40-93 (98)
117 TIGR02338 gimC_beta prefoldin, 47.1 55 0.0012 22.4 4.7 28 48-75 69-96 (110)
118 TIGR00237 xseA exodeoxyribonuc 47.0 99 0.0021 26.1 7.0 20 53-72 300-319 (432)
119 PLN02320 seryl-tRNA synthetase 47.0 1.5E+02 0.0033 26.2 8.4 57 35-91 107-180 (502)
120 COG0783 Dps DNA-binding ferrit 46.8 37 0.00079 25.5 4.0 47 37-83 46-96 (156)
121 PF07544 Med9: RNA polymerase 46.8 84 0.0018 20.8 5.4 49 22-75 19-67 (83)
122 TIGR01005 eps_transp_fam exopo 46.8 1.1E+02 0.0024 27.0 7.5 64 17-80 161-228 (754)
123 PF06342 DUF1057: Alpha/beta h 46.7 14 0.00031 30.8 2.0 37 4-41 65-101 (297)
124 PF08826 DMPK_coil: DMPK coile 46.7 80 0.0017 20.5 6.5 41 35-76 15-55 (61)
125 PF05791 Bacillus_HBL: Bacillu 46.1 1.1E+02 0.0025 22.8 6.6 34 42-75 145-178 (184)
126 PF05546 She9_MDM33: She9 / Md 46.1 1.3E+02 0.0029 24.0 7.2 47 29-75 3-54 (207)
127 PF12896 Apc4: Anaphase-promot 46.0 1.2E+02 0.0025 22.2 7.1 44 29-72 25-68 (210)
128 PRK06665 flgK flagellar hook-a 45.8 1.3E+02 0.0029 26.7 7.9 41 37-77 155-195 (627)
129 PF05531 NPV_P10: Nucleopolyhe 45.8 75 0.0016 21.6 5.1 36 39-75 22-57 (75)
130 COG4062 MtrB Tetrahydromethano 45.6 34 0.00074 25.0 3.6 33 50-82 28-60 (108)
131 PF09304 Cortex-I_coil: Cortex 45.2 1E+02 0.0022 22.4 5.9 22 50-71 55-76 (107)
132 PHA03385 IX capsid protein IX, 44.9 32 0.00069 26.0 3.4 28 49-76 103-130 (135)
133 PF02601 Exonuc_VII_L: Exonucl 44.4 1.5E+02 0.0032 23.2 7.3 17 55-71 193-209 (319)
134 PRK00286 xseA exodeoxyribonucl 43.9 1.3E+02 0.0028 24.9 7.1 16 55-70 307-322 (438)
135 PRK15374 pathogenicity island 43.7 1.2E+02 0.0027 27.8 7.4 56 28-84 124-179 (593)
136 PF02185 HR1: Hr1 repeat; Int 43.2 45 0.00098 21.0 3.5 46 32-77 19-64 (70)
137 PF10152 DUF2360: Predicted co 43.0 83 0.0018 23.0 5.3 28 42-72 13-40 (148)
138 PRK11637 AmiB activator; Provi 42.3 1.4E+02 0.003 24.7 7.1 9 4-12 28-36 (428)
139 cd00584 Prefoldin_alpha Prefol 42.0 79 0.0017 21.6 4.9 21 53-73 94-114 (129)
140 PF06875 PRF: Plethodontid rec 41.6 87 0.0019 25.2 5.6 34 49-82 130-163 (214)
141 PF09731 Mitofilin: Mitochondr 41.5 1.7E+02 0.0037 25.0 7.6 47 28-74 345-399 (582)
142 PF06667 PspB: Phage shock pro 41.1 45 0.00098 22.5 3.4 18 52-69 48-65 (75)
143 KOG3681 Alpha-catenin [Extrace 41.0 88 0.0019 29.7 6.3 50 26-75 320-371 (835)
144 PRK09458 pspB phage shock prot 40.8 46 0.00099 22.8 3.4 17 53-69 49-65 (75)
145 PF11945 WASH_WAHD: WAHD domai 40.8 1.5E+02 0.0032 24.4 7.0 33 42-74 36-71 (297)
146 PF10960 DUF2762: Protein of u 40.7 56 0.0012 21.7 3.8 11 5-15 17-27 (71)
147 KOG2802 Membrane protein HUEL 40.1 75 0.0016 28.4 5.4 21 53-73 472-492 (503)
148 PRK07521 flgK flagellar hook-a 40.1 2E+02 0.0043 24.5 7.8 40 37-76 138-177 (483)
149 COG5460 Uncharacterized conser 40.0 28 0.00061 24.4 2.3 22 48-69 59-80 (82)
150 PF00210 Ferritin: Ferritin-li 39.9 52 0.0011 21.4 3.5 29 39-67 32-60 (142)
151 PF05164 ZapA: Cell division p 39.8 76 0.0016 20.0 4.2 11 39-49 63-73 (89)
152 PRK05431 seryl-tRNA synthetase 39.6 2.3E+02 0.005 23.9 8.4 57 36-92 43-117 (425)
153 cd01043 DPS DPS protein, ferri 39.6 60 0.0013 22.2 3.9 30 37-66 29-58 (139)
154 TIGR02492 flgK_ends flagellar 39.6 2E+02 0.0043 23.0 7.8 41 37-77 143-183 (322)
155 PRK13922 rod shape-determining 39.5 1.5E+02 0.0034 22.8 6.6 23 27-49 44-66 (276)
156 KOG1106 Uncharacterized conser 39.4 1.4E+02 0.003 23.5 6.2 57 5-70 98-160 (177)
157 PF10152 DUF2360: Predicted co 39.3 1.5E+02 0.0033 21.6 7.2 39 30-72 9-47 (148)
158 cd01111 HTH_MerD Helix-Turn-He 39.2 1.2E+02 0.0026 20.8 5.4 29 44-72 78-106 (107)
159 PRK08471 flgK flagellar hook-a 39.1 1.9E+02 0.0042 25.7 7.9 41 37-77 148-188 (613)
160 smart00503 SynN Syntaxin N-ter 39.0 1.1E+02 0.0024 19.9 6.5 29 40-68 44-72 (117)
161 PF08946 Osmo_CC: Osmosensory 38.9 64 0.0014 20.4 3.6 27 49-75 15-41 (46)
162 KOG1656 Protein involved in gl 38.8 1.9E+02 0.0042 23.5 7.2 17 56-72 160-176 (221)
163 PRK06765 homoserine O-acetyltr 38.5 31 0.00067 28.5 2.8 39 2-40 100-157 (389)
164 KOG1511 Mevalonate kinase MVK/ 38.4 1.7E+02 0.0037 25.6 7.2 39 17-60 235-273 (397)
165 PF15469 Sec5: Exocyst complex 38.0 1.4E+02 0.003 21.6 5.8 49 31-80 124-172 (182)
166 TIGR03185 DNA_S_dndD DNA sulfu 38.0 1.2E+02 0.0026 26.6 6.3 39 32-70 377-415 (650)
167 PRK10947 global DNA-binding tr 37.6 1.7E+02 0.0036 21.6 6.7 43 36-78 25-70 (135)
168 PF04678 DUF607: Protein of un 37.6 1.7E+02 0.0037 21.7 6.4 51 26-76 35-87 (180)
169 TIGR02132 phaR_Bmeg polyhydrox 37.6 1.9E+02 0.0041 23.1 6.8 18 60-77 86-103 (189)
170 COG4582 Uncharacterized protei 37.4 1.8E+02 0.0038 24.0 6.8 48 33-80 18-79 (244)
171 COG4499 Predicted membrane pro 37.4 26 0.00057 30.8 2.2 9 8-16 316-324 (434)
172 PF07586 HXXSHH: Protein of un 37.4 1.5E+02 0.0033 23.3 6.4 47 31-77 162-208 (302)
173 cd00890 Prefoldin Prefoldin is 37.4 70 0.0015 21.4 3.9 35 40-74 88-122 (129)
174 cd00584 Prefoldin_alpha Prefol 37.3 1.3E+02 0.0029 20.5 5.6 37 34-74 5-41 (129)
175 KOG1760 Molecular chaperone Pr 37.0 1.4E+02 0.003 22.6 5.7 37 33-69 82-118 (131)
176 PF01920 Prefoldin_2: Prefoldi 36.8 1.2E+02 0.0025 19.6 4.8 17 55-71 78-94 (106)
177 PF03802 CitX: Apo-citrate lya 36.8 49 0.0011 24.7 3.4 34 3-41 135-168 (170)
178 COG0172 SerS Seryl-tRNA synthe 36.7 2E+02 0.0044 25.1 7.5 59 35-93 43-120 (429)
179 PF05873 Mt_ATP-synt_D: ATP sy 36.7 46 0.001 24.8 3.2 42 34-75 84-125 (161)
180 PF00957 Synaptobrevin: Synapt 36.4 1.2E+02 0.0026 19.6 6.4 23 55-77 26-48 (89)
181 PF06013 WXG100: Proteins of 1 36.2 94 0.002 18.4 5.5 8 54-61 66-73 (86)
182 PF09580 Spore_YhcN_YlaJ: Spor 36.1 72 0.0016 22.8 4.1 30 48-77 141-176 (177)
183 COG1777 Predicted transcriptio 36.1 1.2E+02 0.0025 24.6 5.6 13 10-22 89-101 (217)
184 PF08581 Tup_N: Tup N-terminal 35.9 1.4E+02 0.003 20.2 6.8 40 33-72 2-58 (79)
185 PF11740 KfrA_N: Plasmid repli 35.8 1.3E+02 0.0029 20.0 8.4 64 9-73 40-115 (120)
186 KOG3684 Ca2+-activated K+ chan 35.7 1.2E+02 0.0025 27.3 5.9 35 52-88 440-474 (489)
187 KOG4460 Nuclear pore complex, 35.7 1.2E+02 0.0026 28.4 6.1 40 44-83 614-653 (741)
188 PF13990 YjcZ: YjcZ-like prote 35.7 98 0.0021 25.6 5.2 69 9-78 52-128 (270)
189 PF07195 FliD_C: Flagellar hoo 35.3 97 0.0021 23.6 4.9 11 57-67 204-214 (239)
190 PF02646 RmuC: RmuC family; I 35.3 2E+02 0.0044 23.0 6.9 38 28-65 17-60 (304)
191 PF10805 DUF2730: Protein of u 35.0 1.5E+02 0.0033 20.4 6.2 26 50-75 76-101 (106)
192 PF05008 V-SNARE: Vesicle tran 35.0 1.2E+02 0.0025 19.1 4.6 36 34-69 38-77 (79)
193 PF06120 Phage_HK97_TLTM: Tail 34.6 95 0.0021 25.8 5.0 63 6-75 33-103 (301)
194 TIGR02026 BchE magnesium-proto 34.4 52 0.0011 27.8 3.5 72 2-79 206-299 (497)
195 PF06657 Cep57_MT_bd: Centroso 34.2 1.4E+02 0.0031 19.8 5.9 44 33-76 15-66 (79)
196 COG3143 CheZ Chemotaxis protei 34.2 2.4E+02 0.0053 22.8 7.1 32 40-74 140-171 (217)
197 PRK09448 DNA starvation/statio 34.1 74 0.0016 23.3 3.9 29 38-66 54-82 (162)
198 cd00082 HisKA Histidine Kinase 34.1 77 0.0017 16.7 4.8 25 50-74 38-62 (65)
199 PF14931 IFT20: Intraflagellar 34.0 1.8E+02 0.0039 20.9 5.9 39 25-64 21-59 (120)
200 PRK05658 RNA polymerase sigma 33.9 1.9E+02 0.0042 25.4 7.0 32 48-79 273-304 (619)
201 TIGR00996 Mtu_fam_mce virulenc 33.8 1.5E+02 0.0032 22.8 5.6 16 25-40 131-146 (291)
202 PRK00182 tatB sec-independent 33.8 1.4E+02 0.003 23.0 5.4 45 27-72 24-69 (160)
203 PF12128 DUF3584: Protein of u 33.8 2.2E+02 0.0047 27.2 7.7 53 28-80 718-770 (1201)
204 COG3206 GumC Uncharacterized p 33.7 2.2E+02 0.0047 23.7 7.0 48 33-80 182-229 (458)
205 PF01297 TroA: Periplasmic sol 33.6 2E+02 0.0044 21.5 6.7 52 25-76 97-148 (256)
206 cd01052 DPSL DPS-like protein, 33.6 95 0.0021 21.1 4.2 30 37-66 37-66 (148)
207 PF15027 DUF4525: Domain of un 33.5 1.1E+02 0.0024 23.2 4.8 30 45-74 78-107 (138)
208 PHA02604 rI.-1 hypothetical pr 33.5 1.4E+02 0.003 22.4 5.2 36 28-63 82-117 (126)
209 PF03148 Tektin: Tektin family 33.5 2.8E+02 0.006 23.1 7.5 47 27-73 221-271 (384)
210 PF08653 DASH_Dam1: DASH compl 33.4 63 0.0014 20.9 3.1 10 42-51 5-14 (58)
211 PF02108 FliH: Flagellar assem 33.2 1.4E+02 0.0031 19.5 5.2 37 26-62 4-40 (128)
212 PRK05563 DNA polymerase III su 33.0 58 0.0013 28.4 3.7 21 55-75 371-391 (559)
213 TIGR00237 xseA exodeoxyribonuc 33.0 2.5E+02 0.0054 23.7 7.3 44 30-73 317-365 (432)
214 PF09277 Erythro-docking: Eryt 32.9 25 0.00054 23.2 1.1 20 58-77 8-27 (58)
215 KOG2336 Molybdopterin biosynth 32.9 70 0.0015 27.8 4.0 29 55-83 5-33 (422)
216 PF05010 TACC: Transforming ac 32.9 2.4E+02 0.0053 22.1 7.4 27 51-77 35-61 (207)
217 KOG0796 Spliceosome subunit [R 32.8 2.2E+02 0.0047 24.2 6.9 25 53-77 112-139 (319)
218 PF09551 Spore_II_R: Stage II 32.3 1.9E+02 0.004 21.4 5.7 56 26-82 18-74 (130)
219 PLN02554 UDP-glycosyltransfera 32.3 1.7E+02 0.0038 24.7 6.3 50 25-74 426-478 (481)
220 PF09177 Syntaxin-6_N: Syntaxi 31.8 1.6E+02 0.0034 19.6 7.2 24 47-70 40-63 (97)
221 PF03670 UPF0184: Uncharacteri 31.7 1.5E+02 0.0032 20.7 4.8 27 49-75 29-55 (83)
222 PHA01750 hypothetical protein 31.7 1.7E+02 0.0038 20.1 6.0 25 51-75 47-71 (75)
223 PRK10170 hydrogenase 1 large s 31.7 3.6E+02 0.0079 24.4 8.4 51 28-79 426-480 (597)
224 PF10046 BLOC1_2: Biogenesis o 31.6 1.7E+02 0.0036 19.9 7.5 28 46-73 28-55 (99)
225 PHA02335 hypothetical protein 31.6 93 0.002 23.1 4.0 41 4-45 6-48 (118)
226 PF10280 Med11: Mediator compl 31.5 41 0.00088 23.6 2.1 18 61-78 7-24 (117)
227 COG4467 Regulator of replicati 31.5 84 0.0018 23.2 3.8 28 50-77 5-32 (114)
228 COG0598 CorA Mg2+ and Co2+ tra 31.5 73 0.0016 25.4 3.8 38 37-74 156-194 (322)
229 PF12296 HsbA: Hydrophobic sur 31.4 1.1E+02 0.0025 20.3 4.2 43 27-69 74-121 (124)
230 COG3609 Predicted transcriptio 31.4 91 0.002 20.9 3.7 47 26-74 10-56 (89)
231 PF12792 CSS-motif: CSS motif 31.1 1.3E+02 0.0029 20.8 4.6 29 26-55 4-32 (208)
232 TIGR01010 BexC_CtrB_KpsE polys 31.0 2.8E+02 0.006 22.2 8.0 34 47-80 171-204 (362)
233 PF03233 Cauli_AT: Aphid trans 30.7 2.6E+02 0.0055 21.7 6.6 60 12-75 68-133 (163)
234 COG4839 FtsL Protein required 30.5 1.7E+02 0.0036 21.7 5.2 22 52-73 73-94 (120)
235 cd01145 TroA_c Periplasmic bin 30.4 2.2E+02 0.0048 20.9 6.0 51 25-75 113-163 (203)
236 PF15249 GLTSCR1: Glioma tumor 30.4 93 0.002 21.5 3.7 26 40-65 53-78 (109)
237 KOG3313 Molecular chaperone Pr 30.4 1.4E+02 0.003 23.8 5.0 29 42-70 47-75 (187)
238 PRK09343 prefoldin subunit bet 30.3 2E+02 0.0043 20.3 7.9 43 36-78 72-117 (121)
239 smart00709 Zpr1 Duplicated dom 30.2 1.1E+02 0.0023 22.9 4.2 42 33-74 98-140 (160)
240 KOG0933 Structural maintenance 30.1 1.2E+02 0.0025 30.0 5.4 54 11-75 945-1002(1174)
241 PRK07737 fliD flagellar cappin 30.1 2.6E+02 0.0056 24.2 7.1 21 52-72 447-467 (501)
242 PF01420 Methylase_S: Type I r 30.0 1.2E+02 0.0026 19.8 4.1 25 49-74 142-166 (167)
243 PF04906 Tweety: Tweety; Inte 29.9 3.4E+02 0.0074 22.9 8.1 54 19-75 277-337 (406)
244 PF11328 DUF3130: Protein of u 29.7 1.9E+02 0.0042 20.5 5.2 39 25-64 42-80 (90)
245 COG3599 DivIVA Cell division i 29.6 1.8E+02 0.0038 23.0 5.5 37 32-72 27-63 (212)
246 PRK12714 flgK flagellar hook-a 29.6 3.4E+02 0.0073 24.2 7.8 41 37-77 143-183 (624)
247 TIGR02132 phaR_Bmeg polyhydrox 29.4 2.9E+02 0.0063 22.0 6.7 15 60-74 121-135 (189)
248 PRK05683 flgK flagellar hook-a 29.3 3.3E+02 0.0071 24.8 7.8 40 37-76 143-182 (676)
249 KOG4302 Microtubule-associated 29.3 1.6E+02 0.0035 27.1 6.0 44 34-81 159-202 (660)
250 KOG3335 Predicted coiled-coil 29.1 2.1E+02 0.0045 22.6 5.8 22 54-75 114-135 (181)
251 cd07626 BAR_SNX9_like The Bin/ 28.9 2.3E+02 0.0049 22.0 6.0 39 37-75 141-180 (199)
252 PRK07191 flgK flagellar hook-a 28.7 3.6E+02 0.0078 22.8 7.8 41 37-77 143-183 (456)
253 KOG2196 Nuclear porin [Nuclear 28.6 1.7E+02 0.0038 24.2 5.5 26 46-71 178-203 (254)
254 KOG3614 Ca2+/Mg2+-permeable ca 28.5 1.5E+02 0.0033 29.8 5.9 49 26-74 1116-1176(1381)
255 cd01040 globin Globins are hem 28.5 1E+02 0.0022 20.0 3.5 36 43-79 56-91 (140)
256 PF00804 Syntaxin: Syntaxin; 28.3 1.5E+02 0.0033 18.4 5.2 29 42-70 45-73 (103)
257 TIGR01803 CM-like chorismate m 28.3 68 0.0015 20.9 2.6 21 55-75 1-21 (82)
258 PLN02677 mevalonate kinase 28.3 2.9E+02 0.0064 23.2 7.0 21 19-40 237-257 (387)
259 PF12205 GIT1_C: G protein-cou 28.3 2.4E+02 0.0052 20.6 7.8 48 27-74 19-76 (123)
260 PF05130 FlgN: FlgN protein; 28.2 1.8E+02 0.0038 19.0 8.0 52 28-79 12-70 (143)
261 PF14282 FlxA: FlxA-like prote 28.2 2E+02 0.0044 19.8 7.8 54 27-80 18-78 (106)
262 TIGR00293 prefoldin, archaeal 27.9 2E+02 0.0043 19.5 5.6 28 45-72 12-39 (126)
263 cd07307 BAR The Bin/Amphiphysi 27.9 1.9E+02 0.0041 19.3 7.2 41 27-67 64-105 (194)
264 TIGR01013 2a58 Phosphate:Na+ S 27.9 1.7E+02 0.0036 24.5 5.4 47 26-72 380-426 (456)
265 PLN02867 Probable galacturonos 27.8 2.3E+02 0.0049 25.6 6.5 74 4-82 77-173 (535)
266 PRK08147 flgK flagellar hook-a 27.7 4E+02 0.0086 23.0 7.8 41 37-77 144-184 (547)
267 PF04568 IATP: Mitochondrial A 27.5 1.7E+02 0.0037 20.7 4.7 30 41-70 71-100 (100)
268 PF00489 IL6: Interleukin-6/G- 27.5 61 0.0013 23.8 2.5 47 35-85 68-114 (154)
269 PF11172 DUF2959: Protein of u 27.4 1.8E+02 0.0039 23.2 5.3 36 37-72 165-200 (201)
270 cd07623 BAR_SNX1_2 The Bin/Amp 27.3 2.8E+02 0.0061 21.1 6.7 50 26-75 151-204 (224)
271 PF04912 Dynamitin: Dynamitin 27.2 1.1E+02 0.0024 25.1 4.2 8 37-44 359-366 (388)
272 PRK10361 DNA recombination pro 27.1 3.8E+02 0.0082 23.8 7.6 23 30-52 101-123 (475)
273 COG3416 Uncharacterized protei 27.1 2E+02 0.0042 23.6 5.5 22 54-75 56-77 (233)
274 PRK14952 DNA polymerase III su 27.0 2.2E+02 0.0049 25.3 6.3 24 56-79 370-393 (584)
275 PF14005 YpjP: YpjP-like prote 26.9 2.8E+02 0.0061 20.9 8.3 42 44-85 21-64 (136)
276 COG2021 MET2 Homoserine acetyl 26.9 58 0.0013 28.0 2.6 39 2-40 93-143 (368)
277 PF04888 SseC: Secretion syste 26.8 2.8E+02 0.0061 21.7 6.2 40 37-76 256-295 (306)
278 PRK06285 chorismate mutase; Pr 26.7 94 0.002 20.9 3.1 24 52-75 6-29 (96)
279 PF11101 DUF2884: Protein of u 26.5 3.1E+02 0.0067 21.3 8.3 48 27-74 135-188 (229)
280 smart00190 IL4_13 Interleukins 26.5 96 0.0021 23.4 3.4 18 28-45 117-134 (138)
281 cd07666 BAR_SNX7 The Bin/Amphi 26.2 1.2E+02 0.0027 24.2 4.2 38 35-72 30-73 (243)
282 PRK04654 sec-independent trans 26.1 3.5E+02 0.0076 21.8 7.3 42 29-70 28-71 (214)
283 PHA03332 membrane glycoprotein 26.1 1.5E+02 0.0032 29.6 5.3 39 26-64 939-977 (1328)
284 PRK06975 bifunctional uroporph 26.1 3.5E+02 0.0076 24.2 7.3 19 53-71 378-396 (656)
285 PF02996 Prefoldin: Prefoldin 26.1 2E+02 0.0044 19.0 6.2 46 25-74 74-119 (120)
286 PRK08032 fliD flagellar cappin 25.9 3.3E+02 0.0071 23.2 6.9 20 49-68 416-435 (462)
287 PF01402 RHH_1: Ribbon-helix-h 25.8 31 0.00067 19.0 0.6 26 47-75 6-31 (39)
288 PRK13936 phosphoheptose isomer 25.7 2.6E+02 0.0057 20.7 5.6 42 36-77 3-44 (197)
289 PRK06945 flgK flagellar hook-a 25.6 4.3E+02 0.0093 23.8 7.8 40 37-76 144-183 (651)
290 PRK11115 transcriptional regul 25.5 2.8E+02 0.006 20.4 6.0 46 25-70 127-172 (236)
291 KOG4496 Predicted coiled-coil 25.5 3.2E+02 0.007 21.6 6.3 45 25-73 24-68 (194)
292 PF04899 MbeD_MobD: MbeD/MobD 25.2 2.1E+02 0.0046 19.0 5.7 12 37-48 30-41 (70)
293 PF11460 DUF3007: Protein of u 25.2 92 0.002 22.5 3.0 48 2-50 42-93 (104)
294 PF04380 BMFP: Membrane fusoge 25.1 2.1E+02 0.0045 18.8 5.9 42 26-67 26-78 (79)
295 PF14372 DUF4413: Domain of un 25.1 2.2E+02 0.0048 19.1 6.6 45 31-75 31-99 (101)
296 KOG3650 Predicted coiled-coil 25.0 1.6E+02 0.0036 21.7 4.3 34 54-87 71-118 (120)
297 PF06698 DUF1192: Protein of u 24.9 1.1E+02 0.0024 19.9 3.1 21 55-75 23-43 (59)
298 PRK15364 pathogenicity island 24.9 3.1E+02 0.0066 22.0 6.1 35 35-69 51-88 (196)
299 PF04157 EAP30: EAP30/Vps36 fa 24.7 1.5E+02 0.0033 22.5 4.3 47 35-82 30-76 (223)
300 PF11225 DUF3024: Protein of u 24.7 45 0.00098 20.8 1.2 10 7-16 16-25 (57)
301 COG4570 Rus Holliday junction 24.7 61 0.0013 24.3 2.1 17 62-78 84-100 (132)
302 PF02388 FemAB: FemAB family; 24.6 4.1E+02 0.0089 22.0 7.5 48 27-74 241-294 (406)
303 COG5158 SEC1 Proteins involved 24.6 2.9E+02 0.0063 25.1 6.6 32 12-48 278-309 (582)
304 PF04163 Tht1: Tht1-like nucle 24.4 3.1E+02 0.0067 24.6 6.7 35 25-59 383-424 (544)
305 PF14301 DUF4376: Domain of un 24.4 2.1E+02 0.0045 18.6 5.2 37 9-46 55-91 (111)
306 PF08020 DUF1706: Protein of u 24.4 76 0.0017 23.8 2.6 46 25-74 6-51 (166)
307 PF02601 Exonuc_VII_L: Exonucl 24.4 2.2E+02 0.0047 22.3 5.2 45 28-72 140-184 (319)
308 COG4976 Predicted methyltransf 24.4 1.1E+02 0.0025 25.6 3.8 19 30-48 84-102 (287)
309 PF05565 Sipho_Gp157: Siphovir 24.4 2.9E+02 0.0063 20.2 7.3 39 33-71 27-65 (162)
310 PF07047 OPA3: Optic atrophy 3 24.3 1.1E+02 0.0024 21.9 3.3 23 53-75 105-127 (134)
311 PF13851 GAS: Growth-arrest sp 24.2 3.3E+02 0.0071 20.8 7.8 29 53-81 150-178 (201)
312 PF09789 DUF2353: Uncharacteri 24.2 2.3E+02 0.0049 23.9 5.5 47 23-71 271-318 (319)
313 PF06840 DUF1241: Protein of u 24.1 1.7E+02 0.0037 22.2 4.4 30 46-75 99-135 (154)
314 PF03273 Baculo_gp64: Baculovi 24.0 4.3E+02 0.0093 23.9 7.4 53 17-71 276-328 (498)
315 PF07195 FliD_C: Flagellar hoo 24.0 1.9E+02 0.0041 22.0 4.7 22 51-72 191-212 (239)
316 PF12732 YtxH: YtxH-like prote 23.9 2E+02 0.0043 18.2 7.5 46 25-73 27-72 (74)
317 COG3159 Uncharacterized protei 23.9 87 0.0019 25.3 3.0 24 55-78 47-70 (218)
318 PF01346 FKBP_N: Domain amino 23.8 2.3E+02 0.0051 18.9 5.6 63 16-84 57-119 (124)
319 PHA03191 UL14 tegument protein 23.6 2.3E+02 0.005 23.3 5.3 53 39-91 102-166 (238)
320 PRK06798 fliD flagellar cappin 23.6 1.4E+02 0.0031 25.4 4.3 20 49-68 382-401 (440)
321 PRK00892 lpxD UDP-3-O-[3-hydro 23.6 56 0.0012 26.1 1.8 20 50-69 321-340 (343)
322 PF14335 DUF4391: Domain of un 23.5 2.7E+02 0.0058 21.2 5.4 54 25-80 142-202 (221)
323 COG0598 CorA Mg2+ and Co2+ tra 23.5 3.3E+02 0.0072 21.7 6.2 34 30-70 138-171 (322)
324 PF02932 Neur_chan_memb: Neuro 23.2 56 0.0012 21.3 1.5 29 4-38 8-36 (237)
325 PRK10626 hypothetical protein; 23.1 4.1E+02 0.0089 21.5 6.7 37 38-74 200-236 (239)
326 COG0783 Dps DNA-binding ferrit 23.0 3.2E+02 0.0069 20.5 5.7 36 34-69 101-148 (156)
327 PF11382 DUF3186: Protein of u 22.8 1.9E+02 0.0042 23.4 4.8 32 34-69 31-62 (308)
328 COG1394 NtpD Archaeal/vacuolar 22.8 2.3E+02 0.005 22.5 5.1 38 28-69 132-171 (211)
329 PRK11637 AmiB activator; Provi 22.8 3.9E+02 0.0084 22.1 6.6 9 7-15 27-35 (428)
330 PF00509 Hemagglutinin: Haemag 22.7 16 0.00035 32.9 -1.5 44 33-76 369-412 (550)
331 PF00561 Abhydrolase_1: alpha/ 22.6 77 0.0017 21.4 2.1 39 2-40 1-41 (230)
332 PF03401 TctC: Tripartite tric 22.6 2.8E+02 0.0061 21.5 5.5 57 22-78 211-274 (274)
333 PRK07857 hypothetical protein; 22.5 1.3E+02 0.0027 21.6 3.3 21 55-75 30-50 (106)
334 PF05842 Euplotes_phero: Euplo 22.5 67 0.0014 24.3 1.9 18 29-46 3-21 (134)
335 COG2047 Uncharacterized protei 22.4 2E+02 0.0042 23.9 4.7 37 20-58 196-238 (258)
336 PRK12718 flgL flagellar hook-a 22.4 3.5E+02 0.0075 23.9 6.5 51 12-67 402-452 (510)
337 TIGR01834 PHA_synth_III_E poly 22.3 1.2E+02 0.0027 25.5 3.7 27 49-75 292-318 (320)
338 COG4942 Membrane-bound metallo 22.3 5.4E+02 0.012 22.6 7.6 24 53-76 87-110 (420)
339 PRK07739 flgK flagellar hook-a 22.2 5.1E+02 0.011 22.3 7.8 40 37-76 155-194 (507)
340 PF05121 GvpK: Gas vesicle pro 22.2 2.9E+02 0.0063 19.4 6.2 57 21-80 6-72 (88)
341 cd01107 HTH_BmrR Helix-Turn-He 22.1 2.5E+02 0.0055 18.8 4.6 28 47-74 76-103 (108)
342 PF04582 Reo_sigmaC: Reovirus 22.1 2.1E+02 0.0046 24.2 5.0 43 33-75 110-155 (326)
343 PF15145 DUF4577: Domain of un 22.0 46 0.001 24.9 1.0 11 53-63 90-100 (128)
344 PF11464 Rbsn: Rabenosyn Rab b 22.0 96 0.0021 19.0 2.2 19 53-75 19-37 (42)
345 cd00907 Bacterioferritin Bacte 22.0 1.9E+02 0.0041 19.7 4.0 26 39-64 38-63 (153)
346 KOG4057 Uncharacterized conser 21.8 72 0.0016 25.1 2.1 17 61-77 13-29 (180)
347 PF04344 CheZ: Chemotaxis phos 21.8 3.8E+02 0.0082 20.6 7.9 31 44-74 95-125 (214)
348 smart00808 FABD F-actin bindin 21.8 1.2E+02 0.0026 22.6 3.1 14 65-78 87-100 (126)
349 PRK09966 putative inner membra 21.7 4E+02 0.0086 20.9 6.5 29 38-66 217-245 (407)
350 PF05816 TelA: Toxic anion res 21.7 3.3E+02 0.0072 22.0 5.9 34 35-68 84-117 (333)
351 TIGR02054 MerD mercuric resist 21.7 3E+02 0.0065 19.5 6.0 32 49-80 86-117 (120)
352 COG2919 Septum formation initi 21.6 2.9E+02 0.0063 19.3 5.1 26 50-75 61-86 (117)
353 PF12805 FUSC-like: FUSC-like 21.5 3.9E+02 0.0085 20.7 6.4 49 27-75 205-258 (284)
354 PRK06799 flgK flagellar hook-a 21.5 5E+02 0.011 21.9 7.8 39 38-76 149-187 (431)
355 COG0013 AlaS Alanyl-tRNA synth 21.5 1.8E+02 0.0038 27.8 4.8 46 29-75 709-754 (879)
356 PHA02557 22 prohead core prote 21.3 3.5E+02 0.0075 22.6 6.0 41 34-74 118-162 (271)
357 cd00592 HTH_MerR-like Helix-Tu 21.3 1.8E+02 0.0039 18.8 3.6 15 52-66 83-97 (100)
358 PF04124 Dor1: Dor1-like famil 21.2 4.4E+02 0.0096 21.2 7.7 50 26-75 16-75 (338)
359 TIGR01795 CM_mono_cladeE monof 21.2 1.3E+02 0.0029 20.4 3.1 23 53-75 3-25 (94)
360 PF12153 CAP18_C: LPS binding 21.1 1.8E+02 0.0039 16.7 3.7 23 43-65 3-25 (28)
361 PF12999 PRKCSH-like: Glucosid 21.1 4E+02 0.0087 20.6 7.0 48 27-74 120-174 (176)
362 PF06037 DUF922: Bacterial pro 21.0 1.6E+02 0.0034 21.9 3.7 31 37-67 120-150 (161)
363 PRK08871 flgK flagellar hook-a 20.9 6.1E+02 0.013 22.9 7.8 40 37-76 146-185 (626)
364 PRK10935 nitrate/nitrite senso 20.9 4.6E+02 0.0099 21.3 6.9 50 22-72 201-250 (565)
365 PRK13169 DNA replication intia 20.8 2E+02 0.0042 20.6 4.0 10 43-52 23-32 (110)
366 PF10241 KxDL: Uncharacterized 20.7 2.7E+02 0.0059 18.6 6.8 44 30-77 38-81 (88)
367 COG1729 Uncharacterized protei 20.6 2.1E+02 0.0046 23.3 4.6 12 37-48 65-76 (262)
368 PRK14127 cell division protein 20.6 3.3E+02 0.0071 19.5 6.6 49 25-74 24-72 (109)
369 TIGR02231 conserved hypothetic 20.6 5.3E+02 0.011 21.9 7.1 47 25-72 125-171 (525)
370 PRK08032 fliD flagellar cappin 20.6 1.9E+02 0.0041 24.6 4.5 21 51-71 411-431 (462)
371 PRK10361 DNA recombination pro 20.4 3.3E+02 0.0072 24.1 6.0 36 37-76 375-410 (475)
372 PRK07075 isochorismate-pyruvat 20.2 1.5E+02 0.0033 20.3 3.3 23 53-75 8-30 (101)
373 PF04091 Sec15: Exocyst comple 20.2 1.1E+02 0.0024 24.7 2.9 43 13-55 168-223 (311)
374 PHA00442 host recBCD nuclease 20.2 1.5E+02 0.0032 19.6 3.0 26 55-80 15-42 (59)
375 PTZ00464 SNF-7-like protein; P 20.1 4.3E+02 0.0093 20.6 7.7 19 63-81 160-178 (211)
376 PRK03947 prefoldin subunit alp 20.1 3.1E+02 0.0068 19.0 7.2 49 25-77 91-139 (140)
377 PHA02675 ORF104 fusion protein 20.1 3.3E+02 0.0072 19.4 6.0 38 33-74 35-72 (90)
378 PF10559 Plug_translocon: Plug 20.0 44 0.00096 19.3 0.4 19 4-22 4-22 (35)
No 1
>KOG4117 consensus Heat shock factor binding protein [Transcription; Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=8.5e-32 Score=181.05 Aligned_cols=65 Identities=51% Similarity=0.756 Sum_probs=62.4
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHhhCCCCCCC
Q 034185 18 DSEDPKQSTADMTVFVQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDLRAEMGVEGSPS 83 (102)
Q Consensus 18 ~s~dpkqs~~dLT~~Vq~LLqQMQ~kFqtMS~~I~~RiDeMg~RIDdLEksI~dLm~qaG~e~~p~ 83 (102)
+..||| +++|||.+||+||||.|+|||+||++|++||||||+|||||||||+|||+|+|||++++
T Consensus 7 a~aDpk-Nmq~LTs~vQ~lLQq~QDkFQtMSDQII~RiDDM~~riDDLEKnIaDLm~qagvE~~~s 71 (73)
T KOG4117|consen 7 AEADPK-NMQDLTSVVQGLLQQTQDKFQTMSDQIIGRIDDMSSRIDDLEKNIADLMTQAGVEELES 71 (73)
T ss_pred CCCCcc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHccccCCCC
Confidence 457899 99999999999999999999999999999999999999999999999999999999874
No 2
>PF06825 HSBP1: Heat shock factor binding protein 1; InterPro: IPR009643 Heat shock factor binding protein 1 (HSBP1) appears to be a negative regulator of the heat shock response [].; PDB: 3CI9_A.
Probab=99.96 E-value=1.7e-29 Score=161.57 Aligned_cols=54 Identities=61% Similarity=0.923 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHhhCCC
Q 034185 26 TADMTVFVQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDLRAEMGVE 79 (102)
Q Consensus 26 ~~dLT~~Vq~LLqQMQ~kFqtMS~~I~~RiDeMg~RIDdLEksI~dLm~qaG~e 79 (102)
.+|||+||++||+|||+||++||++|++||||||+|||+||+||++||+|+|+|
T Consensus 1 s~elt~~v~~lL~qmq~kFq~mS~~I~~riDeM~~RIDdLE~si~dl~~qag~~ 54 (54)
T PF06825_consen 1 SQELTAFVQNLLQQMQDKFQTMSDQILGRIDEMSSRIDDLEKSIADLMTQAGVE 54 (54)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH----------
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC
Confidence 479999999999999999999999999999999999999999999999999986
No 3
>COG3937 Uncharacterized conserved protein [Function unknown]
Probab=95.18 E-value=0.13 Score=37.32 Aligned_cols=53 Identities=28% Similarity=0.514 Sum_probs=40.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH---------------HHHhhhHHHHHHHHHHHHHh
Q 034185 23 KQSTADMTVFVQNLLQQMQSRFQTMSDSIVTKI---------------DEMGNRINELEQSINDLRAE 75 (102)
Q Consensus 23 kqs~~dLT~~Vq~LLqQMQ~kFqtMS~~I~~Ri---------------DeMg~RIDdLEksI~dLm~q 75 (102)
+-|.++=..||+.|++|.+..=...-..|-.|| ++.-.|||.||+.|++|=++
T Consensus 38 eln~eEak~~vddl~~q~k~~~~e~e~K~~r~i~~ml~~~~~~r~~~~~~l~~rvd~Lerqv~~Lenk 105 (108)
T COG3937 38 ELNAEEAKRFVDDLLRQAKEAQGELEEKIPRKIEEMLSDLEVARQSEMDELTERVDALERQVADLENK 105 (108)
T ss_pred CCCHHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHHHH
Confidence 457889999999999999866555544444444 34458999999999999765
No 4
>PF10393 Matrilin_ccoil: Trimeric coiled-coil oligomerisation domain of matrilin; InterPro: IPR019466 This entry represents a short domain found the matrilin (cartilage matrix) proteins. It forms a coiled coil structure and contains a single cysteine residue at its start which is likely to form a di-sulphide bridge with a corresponding cysteine in an upstream EGF domain (IPR006209 from INTERPRO), thereby spanning the VWA domain of the protein (IPR002035 from INTERPRO).This domain is likely to be responsible for protein trimerisation []. ; PDB: 1AQ5_C.
Probab=93.95 E-value=0.19 Score=31.53 Aligned_cols=19 Identities=26% Similarity=0.625 Sum_probs=15.7
Q ss_pred HHHhHHHHhhhHHHHHHHH
Q 034185 51 IVTKIDEMGNRINELEQSI 69 (102)
Q Consensus 51 I~~RiDeMg~RIDdLEksI 69 (102)
+..|+|+|+.||..||..+
T Consensus 28 Lt~kL~~vs~RLe~LEn~~ 46 (47)
T PF10393_consen 28 LTQKLDAVSKRLEALENRL 46 (47)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcc
Confidence 3456899999999999875
No 5
>PF01601 Corona_S2: Coronavirus S2 glycoprotein; InterPro: IPR002552 The type I glycoprotein S of Coronavirus, trimers of which constitute the typical viral spikes, is assembled into virions through noncovalent interactions with the M protein. The spike glycoprotein is translated as a large polypeptide that is subsequently cleaved to S1 IPR002551 from INTERPRO and S2 []. Both chimeric S proteins appeared to cause cell fusion when expressed individually, suggesting that they were biologically fully active []. The spike is a type I membrane glycoprotein that possesses a conserved transmembrane anchor and an unusual cysteine-rich (cys) domain that bridges the putative junction of the anchor and the cytoplasmic tail [].; GO: 0006944 cellular membrane fusion, 0046813 virion attachment, binding of host cell surface receptor, 0016021 integral to membrane, 0019031 viral envelope; PDB: 2BEQ_B 2FXP_A 1ZVB_A 1WNC_D 1ZV8_H 1ZV7_B 1WYY_B 1ZVA_A 2BEZ_F 1WDG_A ....
Probab=91.45 E-value=0.25 Score=44.46 Aligned_cols=41 Identities=24% Similarity=0.468 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHH--HHHHHH
Q 034185 30 TVFVQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQS--INDLRA 74 (102)
Q Consensus 30 T~~Vq~LLqQMQ~kFqtMS~~I~~RiDeMg~RIDdLEks--I~dLm~ 74 (102)
.+.++.|..||+++|+.+| +-|.|.-+|+|.||+. |..|++
T Consensus 286 ~~aL~~L~~qL~nnF~AIS----ssI~dIy~RLd~leAdaQVDRLIt 328 (610)
T PF01601_consen 286 GQALNQLTSQLSNNFGAIS----SSIQDIYNRLDQLEADAQVDRLIT 328 (610)
T ss_dssp HHHHHHHHHHHHHHCCHHH----HHHHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHHhhhhhhH----HHHHHHHHHHHHHhhccccccccc
Confidence 4577889999999999988 5567999999999975 334443
No 6
>PF05597 Phasin: Poly(hydroxyalcanoate) granule associated protein (phasin); InterPro: IPR008769 Polyhydroxyalkanoates (PHAs) are storage polyesters synthesised by various bacteria as intracellular carbon and energy reserve material. PHAs are accumulated as water-insoluble inclusions within the cells. This family consists of the phasins PhaF and PhaI which act as a transcriptional regulator of PHA biosynthesis genes. PhaF has been proposed to repress expression of the phaC1 gene and the phaIF operon.
Probab=91.35 E-value=1.2 Score=32.69 Aligned_cols=48 Identities=13% Similarity=0.324 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh--------HHHHhhhHHHHHHHHHHHHH
Q 034185 27 ADMTVFVQNLLQQMQSRFQTMSDSIVTK--------IDEMGNRINELEQSINDLRA 74 (102)
Q Consensus 27 ~dLT~~Vq~LLqQMQ~kFqtMS~~I~~R--------iDeMg~RIDdLEksI~dLm~ 74 (102)
.+++.-+..-+..+...|+.=-..++.| ||.++.|||.|++.|..|..
T Consensus 75 ~~~~~~~~~~~dklE~~fd~rV~~aL~rLgvPs~~dv~~L~~rId~L~~~v~~l~~ 130 (132)
T PF05597_consen 75 DDVKERATGQWDKLEQAFDERVARALNRLGVPSRKDVEALSARIDQLTAQVERLAN 130 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3444555555555666666544455555 48889999999999988864
No 7
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=90.86 E-value=0.63 Score=40.79 Aligned_cols=70 Identities=19% Similarity=0.234 Sum_probs=41.9
Q ss_pred hhhhHHhhcCCCCC-CC--CCCHHHHHHHHHHHHHH----------------HHHHHHHHHHHHH---HhHHHHhhhHHH
Q 034185 7 SNWLLFWQDGHDSE-DP--KQSTADMTVFVQNLLQQ----------------MQSRFQTMSDSIV---TKIDEMGNRINE 64 (102)
Q Consensus 7 ~~~~~~~~~~~~s~-dp--kqs~~dLT~~Vq~LLqQ----------------MQ~kFqtMS~~I~---~RiDeMg~RIDd 64 (102)
..|++|-++..... .+ +-.+-++|.+|..++.+ ++.+|..+-.+.= .+..++.+||++
T Consensus 29 g~~~~~~~~~~~~~~~~~~~~~~~~~~~vV~~~FddkVnqSALteqQ~kasELEKqLaaLrqElq~~saq~~dle~KIke 108 (475)
T PRK13729 29 GALYLSDVDMSGNGEAVAEQEPVPDMTGVVDTTFDDKVRQHATTEMQVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEK 108 (475)
T ss_pred ceEEEeccccccccccccccCCCCCccceecchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHH
Confidence 45666666533222 11 11245777777665433 3444555433322 455778889999
Q ss_pred HHHHHHHHHHhh
Q 034185 65 LEQSINDLRAEM 76 (102)
Q Consensus 65 LEksI~dLm~qa 76 (102)
||..+..|-.|.
T Consensus 109 LEaE~~~Lk~Ql 120 (475)
T PRK13729 109 LGQDNAALAEQV 120 (475)
T ss_pred HHHHHHHHHHHH
Confidence 999999998885
No 8
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=90.57 E-value=1.6 Score=33.52 Aligned_cols=46 Identities=17% Similarity=0.468 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHh
Q 034185 30 TVFVQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDLRAE 75 (102)
Q Consensus 30 T~~Vq~LLqQMQ~kFqtMS~~I~~RiDeMg~RIDdLEksI~dLm~q 75 (102)
..-+.++.+.++..|.+..+++-.++|.+..||..|++.|.+-..+
T Consensus 69 e~~i~~~~~~v~~~~~~~~~~~~~~l~~L~~ri~~L~~~i~ee~~~ 114 (247)
T PF06705_consen 69 EEQINNMQERVENQISEKQEQLQSRLDSLNDRIEALEEEIQEEKEE 114 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555556666777888888888888888888888876654
No 9
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=90.31 E-value=2.3 Score=29.11 Aligned_cols=45 Identities=20% Similarity=0.533 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHH
Q 034185 27 ADMTVFVQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDL 72 (102)
Q Consensus 27 ~dLT~~Vq~LLqQMQ~kFqtMS~~I~~RiDeMg~RIDdLEksI~dL 72 (102)
.++++-+..-++++..++..+ ..-+.+||+.-.+|..||+.+..|
T Consensus 41 ~~~~~~l~~~~~~l~~k~~~l-~~~l~~Id~Ie~~V~~LE~~v~~L 85 (99)
T PF10046_consen 41 KDIAAGLEKNLEDLNQKYEEL-QPYLQQIDQIEEQVTELEQTVYEL 85 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555566677777787776 445678888888888888877765
No 10
>TIGR01834 PHA_synth_III_E poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit. This model represents the PhaE subunit of the heterodimeric class (class III) of polymerase for poly(R)-hydroxyalkanoic acids (PHAs), carbon and energy storage polymers of many bacteria. The most common PHA is polyhydroxybutyrate but about 150 different constituent hydroxyalkanoic acids (HAs) have been identified in various species. This model must be designated subfamily to indicate the heterogeneity of PHAs.
Probab=89.26 E-value=2.1 Score=35.70 Aligned_cols=43 Identities=23% Similarity=0.541 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHH--------hHHHHhhhHHHHHHHHHHHHHhhC
Q 034185 35 NLLQQMQSRFQTMSDSIVT--------KIDEMGNRINELEQSINDLRAEMG 77 (102)
Q Consensus 35 ~LLqQMQ~kFqtMS~~I~~--------RiDeMg~RIDdLEksI~dLm~qaG 77 (102)
+-+-+++-.|+.+.+.++. -|||++.||.+||+.+..|-.+.+
T Consensus 263 na~m~lr~~~qe~~e~~L~~LnlPTRsElDe~~krL~ELrR~vr~L~k~l~ 313 (320)
T TIGR01834 263 NALMRLRIQQQEIVEALLKMLNLPTRSELDEAHQRIQQLRREVKSLKKRLG 313 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3355678888888888884 479999999999999999998865
No 11
>PF07304 SRA1: Steroid receptor RNA activator (SRA1); InterPro: IPR009917 This entry consists of several hypothetical mammalian steroid receptor RNA activator proteins. The SRA-RNAs encode stable proteins that are widely expressed and upregulated in breast cancer cell lines. SRA-RNA is a steroid receptor co-activator which acts as a functional RNA. This domain is also found at the C terminus of Sec31, a component of the coat protein complex II (COPII, which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). COPII has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules. ; PDB: 2YRU_A.
Probab=88.45 E-value=0.9 Score=33.63 Aligned_cols=43 Identities=21% Similarity=0.398 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh-HHHHhhhHHHHHHHHHH
Q 034185 29 MTVFVQNLLQQMQSRFQTMSDSIVTK-IDEMGNRINELEQSIND 71 (102)
Q Consensus 29 LT~~Vq~LLqQMQ~kFqtMS~~I~~R-iDeMg~RIDdLEksI~d 71 (102)
....+..++..|+..+......+-.| +||+.+||+-|+..++.
T Consensus 40 ~~~~i~~~~~~L~~v~~~~~~~~~kr~~~D~~KRL~iLfd~ln~ 83 (157)
T PF07304_consen 40 DEQPIEEVLRELQRVLEACPPSIKKRVVDDIEKRLNILFDHLNN 83 (157)
T ss_dssp ----HHHHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHcccccchhHHHHHHHHHHHHHHHHhc
Confidence 33345555666666666666677777 49999999999988863
No 12
>PF14261 DUF4351: Domain of unknown function (DUF4351)
Probab=87.79 E-value=0.56 Score=29.92 Aligned_cols=41 Identities=20% Similarity=0.361 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHH
Q 034185 32 FVQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDLRA 74 (102)
Q Consensus 32 ~Vq~LLqQMQ~kFqtMS~~I~~RiDeMg~RIDdLEksI~dLm~ 74 (102)
...-++.+++.||-.++..+..||...+ ++.||.=...+..
T Consensus 8 ~~~lllRlL~rrFG~lp~~~~~~I~~l~--~eqLE~l~e~ild 48 (59)
T PF14261_consen 8 EARLLLRLLTRRFGELPPEIQERIQQLS--LEQLEALAEAILD 48 (59)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHcCC--HHHHHHHHHHHhC
Confidence 4567889999999999999999999997 7888876555543
No 13
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=86.85 E-value=1.5 Score=28.35 Aligned_cols=31 Identities=29% Similarity=0.448 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHH
Q 034185 38 QQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDL 72 (102)
Q Consensus 38 qQMQ~kFqtMS~~I~~RiDeMg~RIDdLEksI~dL 72 (102)
+.++.|+.. +=.|+|+...|++.||+..+.+
T Consensus 2 ~~i~e~l~~----ie~~l~~~~~~i~~lE~~~~~~ 32 (71)
T PF10779_consen 2 QDIKEKLNR----IETKLDNHEERIDKLEKRDAAN 32 (71)
T ss_pred HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Confidence 556666644 5578888888888888876544
No 14
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=86.15 E-value=5.7 Score=30.17 Aligned_cols=38 Identities=24% Similarity=0.502 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHH--------HhHHHHhhhHHHHHHHHHHHHHh
Q 034185 37 LQQMQSRFQTMSDSIV--------TKIDEMGNRINELEQSINDLRAE 75 (102)
Q Consensus 37 LqQMQ~kFqtMS~~I~--------~RiDeMg~RIDdLEksI~dLm~q 75 (102)
+++|+...+...+.|+ .-||||-+||-.||..|.. +.+
T Consensus 101 i~eLe~~l~~kad~vvsYqll~hr~e~ee~~~~l~~le~~~~~-~e~ 146 (175)
T PRK13182 101 LDELERQLQQKADDVVSYQLLQHRREMEEMLERLQKLEARLKK-LEP 146 (175)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHH-HHh
Confidence 3444444444444444 4699999999999999999 444
No 15
>PF04513 Baculo_PEP_C: Baculovirus polyhedron envelope protein, PEP, C terminus ; InterPro: IPR007601 Polyhedra are large crystalline occlusion bodies containing nucleopolyhedrovirus virions, and surrounded by an electron-dense structure called the polyhedron envelope or polyhedron calyx. The polyhedron envelope (associated) protein PEP is thought to be an integral part of the polyhedron envelope. PEP is concentrated at the surface of polyhedra, and is thought to be important for the proper formation of the periphery of polyhedra. It is thought that PEP may stabilise polyhedra and protect them from fusion or aggregation [].; GO: 0005198 structural molecule activity, 0019028 viral capsid, 0019031 viral envelope
Probab=85.62 E-value=5.7 Score=29.82 Aligned_cols=45 Identities=16% Similarity=0.409 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHh
Q 034185 31 VFVQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDLRAE 75 (102)
Q Consensus 31 ~~Vq~LLqQMQ~kFqtMS~~I~~RiDeMg~RIDdLEksI~dLm~q 75 (102)
+.+.+++.-++.++..++..|-..+.++..|+|.+..++.+-+++
T Consensus 34 aql~~~~d~i~~~L~~l~~~l~~ll~~l~~~l~~l~~~L~~aln~ 78 (140)
T PF04513_consen 34 AQLTTILDAIQTQLNALSTDLTNLLADLDTRLDTLLTNLNDALNQ 78 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566666666666666666666666777766666665544
No 16
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=85.55 E-value=3 Score=27.03 Aligned_cols=36 Identities=11% Similarity=0.455 Sum_probs=26.3
Q ss_pred HHHHHHHHH---HHHHHHhHHHHhhhHHHHHHHHHHHHH
Q 034185 39 QMQSRFQTM---SDSIVTKIDEMGNRINELEQSINDLRA 74 (102)
Q Consensus 39 QMQ~kFqtM---S~~I~~RiDeMg~RIDdLEksI~dLm~ 74 (102)
.+.+++..+ -..+-.-+.+++..|+.|+++|.+||.
T Consensus 4 elEn~~~~~~~~i~tvk~en~~i~~~ve~i~envk~ll~ 42 (55)
T PF05377_consen 4 ELENELPRIESSINTVKKENEEISESVEKIEENVKDLLS 42 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444433 344456789999999999999999986
No 17
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=85.53 E-value=6.3 Score=35.27 Aligned_cols=45 Identities=31% Similarity=0.491 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHH---HhHHHHhhhHHHHHHHHHHHHHhhCCCCCC
Q 034185 38 QQMQSRFQTMSDSIV---TKIDEMGNRINELEQSINDLRAEMGVEGSP 82 (102)
Q Consensus 38 qQMQ~kFqtMS~~I~---~RiDeMg~RIDdLEksI~dLm~qaG~e~~p 82 (102)
..+|.|++.||.++- .+.+..-+||-+||.+|.+|-++.....+|
T Consensus 25 a~~qqr~~qmseev~~L~eEk~~~~~~V~eLE~sL~eLk~q~~~~~~~ 72 (617)
T PF15070_consen 25 AQWQQRMQQMSEEVRTLKEEKEHDISRVQELERSLSELKNQMAEPPPP 72 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCc
Confidence 346889999998875 455788899999999999999987654433
No 18
>TIGR01837 PHA_granule_1 poly(hydroxyalkanoate) granule-associated protein. This model describes a domain found in some proteins associated with polyhydroxyalkanoate (PHA) granules in a subset of species that have PHA inclusion granules. Included are two tandem proteins of Pseudomonas oleovorans, PhaI and PhaF, and their homologs in related species. PhaF proteins have a low-complexity C-terminal region with repeats similar to AAAKP.
Probab=85.06 E-value=4.9 Score=28.45 Aligned_cols=19 Identities=26% Similarity=0.650 Sum_probs=15.6
Q ss_pred HHHHhhhHHHHHHHHHHHH
Q 034185 55 IDEMGNRINELEQSINDLR 73 (102)
Q Consensus 55 iDeMg~RIDdLEksI~dLm 73 (102)
|+.+..|||.||+.|..|-
T Consensus 98 v~~L~~RI~~Le~~l~~l~ 116 (118)
T TIGR01837 98 IEALSAKIEQLAVQVEELR 116 (118)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 4778889999999988874
No 19
>PF10158 LOH1CR12: Tumour suppressor protein; InterPro: IPR018780 This entry represents a region of 130 amino acids that is the most conserved part of some hypothetical proteins involved in loss of heterozygosity, and thus, tumour suppression []. The exact function of these proteins is not known.
Probab=84.94 E-value=7.6 Score=28.36 Aligned_cols=49 Identities=20% Similarity=0.405 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHh
Q 034185 26 TADMTVFVQNLLQQMQ---SRFQTMSDSIVTKIDEMGNRINELEQSINDLRAE 75 (102)
Q Consensus 26 ~~dLT~~Vq~LLqQMQ---~kFqtMS~~I~~RiDeMg~RIDdLEksI~dLm~q 75 (102)
..++-..+..++++|. .+|..... .+.||++|+..|..+-..+.+++.-
T Consensus 58 iKevd~~~~~l~~~~~erqk~~~k~ae-~L~kv~els~~L~~~~~lL~~~v~~ 109 (131)
T PF10158_consen 58 IKEVDQEIAKLLQQMVERQKRFAKFAE-QLEKVNELSQQLSRCQSLLNQTVPS 109 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555556666664 44555544 6788999999999988888887764
No 20
>PF01519 DUF16: Protein of unknown function DUF16; InterPro: IPR002862 Proteins that contain this domain are of unknown function. It appears to be confined to proteins from Mycoplasma pneumoniae [].; PDB: 2BA2_C.
Probab=84.60 E-value=1.7 Score=31.23 Aligned_cols=21 Identities=14% Similarity=0.431 Sum_probs=17.7
Q ss_pred HHHHHHHHhHHHHhhhHHHHH
Q 034185 46 TMSDSIVTKIDEMGNRINELE 66 (102)
Q Consensus 46 tMS~~I~~RiDeMg~RIDdLE 66 (102)
..-+.|..+|..|+.|||.||
T Consensus 81 ktL~~I~~~L~~inkRLD~~E 101 (102)
T PF01519_consen 81 KTLQLILKTLQSINKRLDKME 101 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHhhcc
Confidence 444778899999999999987
No 21
>PF04344 CheZ: Chemotaxis phosphatase, CheZ; InterPro: IPR007439 This family represents the bacterial chemotaxis phosphatase, CheZ. This protein forms a dimer characterised by a long four-helix bundle, composed of two helices from each monomer. CheZ dephosphorylates CheY in a reaction that is essential to maintain a continuous chemotactic response to environmental changes. It is thought that CheZ's conserved residue Gln 147 orientates a water molecule for nucleophilic attack at the CheY active site. ; GO: 0003824 catalytic activity, 0050920 regulation of chemotaxis, 0009288 bacterial-type flagellum; PDB: 1KMI_Z 2FMK_B 2PMC_F.
Probab=83.61 E-value=1.4 Score=34.04 Aligned_cols=37 Identities=22% Similarity=0.431 Sum_probs=24.1
Q ss_pred HHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHhhCCCCCCC
Q 034185 44 FQTMSDSIVTKIDEMGNRINELEQSINDLRAEMGVEGSPS 83 (102)
Q Consensus 44 FqtMS~~I~~RiDeMg~RIDdLEksI~dLm~qaG~e~~p~ 83 (102)
||.+..|+|.|+=.+ |.++|+.|..|+...|......
T Consensus 129 FQDLTGQ~IkKVv~~---l~~vE~~L~~ll~~~g~~~~~~ 165 (214)
T PF04344_consen 129 FQDLTGQRIKKVVNL---LQEVEERLVQLLVIFGPEEEAA 165 (214)
T ss_dssp HHHHHHHHHHHHHHH---HHHHHHTTTTTT----------
T ss_pred hhHHHHHHHHHHHHH---HHHHHHHHHHHHHHhCcccccc
Confidence 999999999988655 8899999999999999776654
No 22
>PF04380 BMFP: Membrane fusogenic activity; InterPro: IPR007475 BMFP consists of two structural domains, a coiled-coil C-terminal domain via which the protein self-associates as a trimer, and an N-terminal domain disordered at neutral pH but adopting an amphipathic alpha-helical structure in the presence of phospholipid vesicles, high ionic strength, acidic pH or SDS. BMFP interacts with phospholipid vesicles though the predicted amphipathic alpha-helix induced in the N-terminal half of the protein and promotes aggregation and fusion of vesicles in vitro.
Probab=82.59 E-value=8.1 Score=25.65 Aligned_cols=18 Identities=17% Similarity=0.364 Sum_probs=13.3
Q ss_pred HHHhhhHHHHHHHHHHHH
Q 034185 56 DEMGNRINELEQSINDLR 73 (102)
Q Consensus 56 DeMg~RIDdLEksI~dLm 73 (102)
...-.||+.||+.|++|=
T Consensus 60 ~~~r~kl~~LEarl~~LE 77 (79)
T PF04380_consen 60 ARTREKLEALEARLAALE 77 (79)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 344678888888888874
No 23
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=81.90 E-value=9.5 Score=29.47 Aligned_cols=64 Identities=19% Similarity=0.337 Sum_probs=43.1
Q ss_pred HHhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHhHHHHhhhHHHHHHHHHHHHH
Q 034185 11 LFWQDGHDSEDPKQSTADMTVFVQNLLQQMQSRFQ-------TMSDSIVTKIDEMGNRINELEQSINDLRA 74 (102)
Q Consensus 11 ~~~~~~~~s~dpkqs~~dLT~~Vq~LLqQMQ~kFq-------tMS~~I~~RiDeMg~RIDdLEksI~dLm~ 74 (102)
|=+|..++=+..++...+=-...+.||+.++.-|+ .+...|-.+|.+-..+++||...+.+...
T Consensus 136 L~emr~r~f~~~~~~Ae~El~~A~~LL~~v~~~~~~~~~~~~~l~~~i~~~L~~~~~kL~Dl~~~l~eA~~ 206 (264)
T PF06008_consen 136 LEEMRKRDFTPQRQNAEDELKEAEDLLSRVQKWFQKPQQENESLAEAIRDDLNDYNAKLQDLRDLLNEAQN 206 (264)
T ss_pred HHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666555555555555667788888888883 55566777777777888888777776544
No 24
>PF05531 NPV_P10: Nucleopolyhedrovirus P10 protein; InterPro: IPR008702 This family consists of several nucleopolyhedrovirus P10 proteins which are thought to be involved in the morphogenesis of the polyhedra [].; GO: 0019028 viral capsid
Probab=80.65 E-value=8.3 Score=26.30 Aligned_cols=47 Identities=13% Similarity=0.344 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHhhCCCC
Q 034185 33 VQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDLRAEMGVEG 80 (102)
Q Consensus 33 Vq~LLqQMQ~kFqtMS~~I~~RiDeMg~RIDdLEksI~dLm~qaG~e~ 80 (102)
+|+-+++++.++..+ .++-.|+|.++.|+++|+..++++-.=...+.
T Consensus 23 Lq~~V~~l~~~~~~v-~~l~~klDa~~~~l~~l~~~V~~I~~iL~~~~ 69 (75)
T PF05531_consen 23 LQTQVDDLESNLPDV-TELNKKLDAQSAQLTTLNTKVNEIQDILNPDI 69 (75)
T ss_pred HHHHHHHHHhcCCch-HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence 334445555555443 35778999999999999998887766555444
No 25
>PF00509 Hemagglutinin: Haemagglutinin; InterPro: IPR001364 Haemagglutinin (HA) is one of two main surface fusion glycoproteins embedded in the envelope of influenza viruses, the other being neuraminidase (NA). There are sixteen known HA subtypes (H1-H16) and nine NA subtypes (N1-N9), which together are used to classify influenza viruses (e.g. H5N1). The antigenic variations in HA and NA enable the virus to evade host antibodies made to previous influenza strains, accounting for recurrent influenza epidemics []. The HA glycoprotein is present in the viral membrane as a single polypeptide (HA0), which must be cleaved by the host's trypsin-like proteases to produce two peptides (HA1 and HA2) in order for the virus to be infectious. Once HA0 is cleaved, the newly exposed N-terminal of the HA2 peptide then acts to fuse the viral envelope to the cellular membrane of the host cell, which allows the viral negative-stranded RNA to infect the host cell. The type of host protease can influence the infectivity and pathogenicity of the virus. The haemagglutinin glycoprotein is a trimer containing three structurally distinct regions: a globular head consisting of anti-parallel beta-sheets that form a beta-sandwich with a jelly-roll fold (contains the receptor binding site and the HA1/HA2 cleavage site); a triple-stranded, coiled-coil, alpha-helical stalk; and a globular foot composed of anti-parallel beta-sheets [, ]. Each monomer consists of an intact HA0 polypeptide with the HA1 and HA2 regions linked by disulphide bonds. The N terminus of HA1 provides the central strand in the 5-stranded globular foot, while the rest of the HA1 chain makes its way to the 8-stranded globular head. HA2 provides two alpha helices, which form part of the triple-stranded coiled-coil that stabilises the trimer, its C terminus providing the remaining strands of the 5-stranded globular foot. This entry represents the entire haemagglutinin protein (HA0) consisting of both the HA1 and HA2 regions, as found in influenza A and B viruses.; GO: 0046789 host cell surface receptor binding, 0019064 viral envelope fusion with host membrane, 0019031 viral envelope; PDB: 2WR5_A 2IBX_A 2WR0_B 2WR1_C 2XN9_F 2WRF_I 3S11_E 3BT6_A 3SM5_E 2FK0_H ....
Probab=80.36 E-value=0.24 Score=44.09 Aligned_cols=45 Identities=24% Similarity=0.524 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHH
Q 034185 26 TADMTVFVQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDLRA 74 (102)
Q Consensus 26 ~~dLT~~Vq~LLqQMQ~kFqtMS~~I~~RiDeMg~RIDdLEksI~dLm~ 74 (102)
.+++|.-|++|.+.|-.+|+.+. .++++.-+||++||+.+.|...
T Consensus 373 id~it~kvN~iiek~n~~fe~i~----~ef~~ve~Ri~~l~~~v~d~~~ 417 (550)
T PF00509_consen 373 IDQITKKVNSIIEKMNKQFEQID----KEFNEVEKRIDNLEKKVDDKIA 417 (550)
T ss_dssp HHHHHHHHHHHHHTTTCEEEECS----CSSSTTGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccchhhHH----HHHHHHHHHHHHHHHhhhccch
Confidence 45677777777777777775544 6678888889988888888765
No 26
>KOG3759 consensus Uncharacterized RUN domain protein [Signal transduction mechanisms]
Probab=79.90 E-value=16 Score=33.06 Aligned_cols=56 Identities=30% Similarity=0.467 Sum_probs=46.2
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHhhCCCC
Q 034185 21 DPKQSTADMTVFVQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDLRAEMGVEG 80 (102)
Q Consensus 21 dpkqs~~dLT~~Vq~LLqQMQ~kFqtMS~~I~~RiDeMg~RIDdLEksI~dLm~qaG~e~ 80 (102)
=|+-|+.+|..-|++-+.|+-+-|.. -.|++ |..-+.|-|||.-|+=|-.++|.-.
T Consensus 199 i~~lsteelr~qVD~A~~q~VnP~k~-KeQLV---~QLkTQItDLErFInFlQ~e~~e~s 254 (621)
T KOG3759|consen 199 IDKLSTEELRRQVDDALKQLVNPFKE-KEQLV---DQLKTQITDLERFINFLQDEVGENS 254 (621)
T ss_pred cccccHHHHHHHHHHHHHHHhChHHH-HHHHH---HHHHHHHHHHHHHHHHHHHhhhcCC
Confidence 56779999999999999999999853 44444 7788999999999999888887543
No 27
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=79.26 E-value=15 Score=26.96 Aligned_cols=52 Identities=15% Similarity=0.374 Sum_probs=35.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHH
Q 034185 23 KQSTADMTVFVQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDLRA 74 (102)
Q Consensus 23 kqs~~dLT~~Vq~LLqQMQ~kFqtMS~~I~~RiDeMg~RIDdLEksI~dLm~ 74 (102)
+.+..+-.+.|-.=|+|+.+.....=..+..|||.+..+||+..+-.....+
T Consensus 38 rr~m~~A~~~v~kql~~vs~~l~~tKkhLsqRId~vd~klDe~~ei~~~i~~ 89 (126)
T PF07889_consen 38 RRSMSDAVASVSKQLEQVSESLSSTKKHLSQRIDRVDDKLDEQKEISKQIKD 89 (126)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 3345555555555577777777777778888888888888876654444433
No 28
>TIGR02135 phoU_full phosphate transport system regulatory protein PhoU. This model describes PhoU, a regulatory protein of unknown mechanism for high-affinity phosphate ABC transporter systems. The protein consists of two copies of the domain described by Pfam model pfam01895. Deletion of PhoU activates constitutive expression of the phosphate ABC transporter and allows phosphate transport, but causes a growth defect and so likely has some second function.
Probab=77.55 E-value=20 Score=25.05 Aligned_cols=50 Identities=18% Similarity=0.282 Sum_probs=37.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHH
Q 034185 25 STADMTVFVQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDLRA 74 (102)
Q Consensus 25 s~~dLT~~Vq~LLqQMQ~kFqtMS~~I~~RiDeMg~RIDdLEksI~dLm~ 74 (102)
....|...|...+.....=|.+-......++.++..+||.|++.+..-..
T Consensus 117 el~~m~~~v~~~l~~a~~al~~~d~~~~~~i~~~e~~id~l~~~i~~~~~ 166 (212)
T TIGR02135 117 ELEKMGKLALKMLKDALDAFLNKDAELARQVAEMDERVDELYRQIFRELV 166 (212)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666667777777777777888999999999999987765544
No 29
>PF09712 PHA_synth_III_E: Poly(R)-hydroxyalkanoic acid synthase subunit (PHA_synth_III_E)
Probab=77.46 E-value=13 Score=30.03 Aligned_cols=36 Identities=22% Similarity=0.497 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHH--------HhHHHHhhhHHHHHHHHHHH
Q 034185 37 LQQMQSRFQTMSDSIV--------TKIDEMGNRINELEQSINDL 72 (102)
Q Consensus 37 LqQMQ~kFqtMS~~I~--------~RiDeMg~RIDdLEksI~dL 72 (102)
+-.++.+++.+.+.++ +-||++.+||.+||+.+..|
T Consensus 248 ~m~~r~~~~~~~e~~L~~l~lPTr~evd~l~k~l~eLrre~r~L 291 (293)
T PF09712_consen 248 LMDLRKQQQEVVEEYLRSLNLPTRSEVDELYKRLHELRREVRAL 291 (293)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 3456778888888888 45799999999999999877
No 30
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=76.30 E-value=11 Score=25.67 Aligned_cols=40 Identities=18% Similarity=0.416 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHH
Q 034185 32 FVQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDL 72 (102)
Q Consensus 32 ~Vq~LLqQMQ~kFqtMS~~I~~RiDeMg~RIDdLEksI~dL 72 (102)
-++..|+.+..+|..+...|-.|++-...+ ++||..|..|
T Consensus 5 ~le~al~rL~~aid~LE~~v~~r~~~~~~~-~~~e~ei~~l 44 (89)
T PF13747_consen 5 SLEAALTRLEAAIDRLEKAVDRRLERDRKR-DELEEEIQRL 44 (89)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-hhHHHHHHHH
Confidence 355667778888888888888888777665 7777777554
No 31
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=76.25 E-value=12 Score=33.38 Aligned_cols=50 Identities=20% Similarity=0.358 Sum_probs=36.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------Hh-----------HHHHhhhHHHHHHHHHHHHH
Q 034185 25 STADMTVFVQNLLQQMQSRFQTMSDSIV-----------------TK-----------IDEMGNRINELEQSINDLRA 74 (102)
Q Consensus 25 s~~dLT~~Vq~LLqQMQ~kFqtMS~~I~-----------------~R-----------iDeMg~RIDdLEksI~dLm~ 74 (102)
...-....|+..|+|+|+||.....+.- ++ +..+-..|.||+..|.|||-
T Consensus 372 ~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~E~n~~l~knq~vw~~kl~~~~e~~~~~~~s~d~~I~dLqEQlrDlmf 449 (493)
T KOG0804|consen 372 DLEAEKKIVERKLQQLQTKLKKCQKELKEEREENKKLIKNQDVWRGKLKELEEREKEALGSKDEKITDLQEQLRDLMF 449 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhe
Confidence 3455567889999999999987776543 22 23445568899999999984
No 32
>PF04513 Baculo_PEP_C: Baculovirus polyhedron envelope protein, PEP, C terminus ; InterPro: IPR007601 Polyhedra are large crystalline occlusion bodies containing nucleopolyhedrovirus virions, and surrounded by an electron-dense structure called the polyhedron envelope or polyhedron calyx. The polyhedron envelope (associated) protein PEP is thought to be an integral part of the polyhedron envelope. PEP is concentrated at the surface of polyhedra, and is thought to be important for the proper formation of the periphery of polyhedra. It is thought that PEP may stabilise polyhedra and protect them from fusion or aggregation [].; GO: 0005198 structural molecule activity, 0019028 viral capsid, 0019031 viral envelope
Probab=76.05 E-value=21 Score=26.85 Aligned_cols=48 Identities=21% Similarity=0.457 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhH----HHHhhhHHHHHHHHHHHHHh
Q 034185 28 DMTVFVQNLLQQMQSRFQTMSDSIVTKI----DEMGNRINELEQSINDLRAE 75 (102)
Q Consensus 28 dLT~~Vq~LLqQMQ~kFqtMS~~I~~Ri----DeMg~RIDdLEksI~dLm~q 75 (102)
++..-+..|+..++.||++....+..+| |.+-.+|+.|+.-++.|-..
T Consensus 49 ~l~~~l~~ll~~l~~~l~~l~~~L~~aln~Lq~~~rneLtnlnsil~nL~ss 100 (140)
T PF04513_consen 49 ALSTDLTNLLADLDTRLDTLLTNLNDALNQLQDTLRNELTNLNSILNNLTSS 100 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566677778888888888888888 66668999998888888754
No 33
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=75.99 E-value=13 Score=28.55 Aligned_cols=47 Identities=21% Similarity=0.436 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHhhC
Q 034185 28 DMTVFVQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDLRAEMG 77 (102)
Q Consensus 28 dLT~~Vq~LLqQMQ~kFqtMS~~I~~RiDeMg~RIDdLEksI~dLm~qaG 77 (102)
.|...++.-++.|+++++ ..+..|.+.+..++|.|...|..|-....
T Consensus 63 ~lq~~~e~~i~~~~~~v~---~~~~~~~~~~~~~l~~L~~ri~~L~~~i~ 109 (247)
T PF06705_consen 63 KLQSKFEEQINNMQERVE---NQISEKQEQLQSRLDSLNDRIEALEEEIQ 109 (247)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555665554 45677888888999999998888876543
No 34
>PRK00420 hypothetical protein; Validated
Probab=75.82 E-value=2.2 Score=30.80 Aligned_cols=40 Identities=13% Similarity=0.238 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHhHHHHhhhHHHHHHH
Q 034185 29 MTVFVQNLLQQMQSRFQTMSDS-IVTKIDEMGNRINELEQS 68 (102)
Q Consensus 29 LT~~Vq~LLqQMQ~kFqtMS~~-I~~RiDeMg~RIDdLEks 68 (102)
+..+.+-|.+.+..-|..+.+. -++||.|+..-|+-||+=
T Consensus 67 ~~~~~~il~~ki~~L~~kL~~e~~~~ri~Ei~~~l~~l~ki 107 (112)
T PRK00420 67 LKEVEEVLIEKINYLAKKLKEDEDIERITEIIRYLEVLERI 107 (112)
T ss_pred HHHHHHHHHHHHHHHHHhCccccchhHHHHHHHHHHHHHHH
Confidence 3333444445555555555444 667788888888887764
No 35
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=75.59 E-value=3.6 Score=22.60 Aligned_cols=19 Identities=32% Similarity=0.735 Sum_probs=15.4
Q ss_pred HHHHhhhHHHHHHHHHHHH
Q 034185 55 IDEMGNRINELEQSINDLR 73 (102)
Q Consensus 55 iDeMg~RIDdLEksI~dLm 73 (102)
|+..-+||-|||+.+++-.
T Consensus 3 ~~rlr~rI~dLer~L~~C~ 21 (23)
T PF04508_consen 3 MNRLRNRISDLERQLSECR 21 (23)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 5667789999999998743
No 36
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=75.22 E-value=16 Score=25.37 Aligned_cols=41 Identities=12% Similarity=0.385 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHH--H---HHHHHhHHHHhhhHHHHHHHHHHHHHh
Q 034185 35 NLLQQMQSRFQTM--S---DSIVTKIDEMGNRINELEQSINDLRAE 75 (102)
Q Consensus 35 ~LLqQMQ~kFqtM--S---~~I~~RiDeMg~RIDdLEksI~dLm~q 75 (102)
.=|+++..+++.| . ..+-.+|-+|..+++.|+.+|..+-.+
T Consensus 49 ~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~~~ 94 (106)
T PF10805_consen 49 RRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGVSHQ 94 (106)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 3366666666666 2 233455666666666666666554433
No 37
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=73.76 E-value=15 Score=32.59 Aligned_cols=64 Identities=16% Similarity=0.261 Sum_probs=49.4
Q ss_pred CCCCCCCCCHHHHHHHHHHHH-HHHHHHHH---HHHHHHHHhHHHHhhhHHHHHHHHHHHHHhhCCCC
Q 034185 17 HDSEDPKQSTADMTVFVQNLL-QQMQSRFQ---TMSDSIVTKIDEMGNRINELEQSINDLRAEMGVEG 80 (102)
Q Consensus 17 ~~s~dpkqs~~dLT~~Vq~LL-qQMQ~kFq---tMS~~I~~RiDeMg~RIDdLEksI~dLm~qaG~e~ 80 (102)
..+.||.....=+.++++..+ +++..|.+ ...+.|-.|+.+...++++.|+.+++..++.|+-.
T Consensus 234 ~~~~dP~~Aa~ilN~la~~Yi~~~l~~k~~~a~~a~~fL~~qL~~l~~~L~~aE~~l~~fr~~~~~~d 301 (726)
T PRK09841 234 MTGDDPQLITRILNSIANNYLQQNIARQAAQDSQSLEFLQRQLPEVRSELDQAEEKLNVYRQQRDSVD 301 (726)
T ss_pred EeCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 456777755555566666666 56777775 44677889999999999999999999999987643
No 38
>PHA03332 membrane glycoprotein; Provisional
Probab=73.65 E-value=11 Score=36.96 Aligned_cols=49 Identities=14% Similarity=0.280 Sum_probs=35.5
Q ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHH
Q 034185 26 TADMTVFVQNL---LQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDLRA 74 (102)
Q Consensus 26 ~~dLT~~Vq~L---LqQMQ~kFqtMS~~I~~RiDeMg~RIDdLEksI~dLm~ 74 (102)
.+++.+.|+.+ ..+|-++...+|..+-.+||+--.|||+||.+|++=+.
T Consensus 900 Ig~tNaAV~~lsDai~klGnti~kisatl~~nI~avNgRIs~Led~VN~r~~ 951 (1328)
T PHA03332 900 IGGLNARVDKTSDVITKLGDTIAKISATLDNNIRAVNGRVSDLEDQVNLRFL 951 (1328)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHHhcccHHHHHHHHHHHHH
Confidence 34444555444 34666777777778889999999999999998876543
No 39
>PF10158 LOH1CR12: Tumour suppressor protein; InterPro: IPR018780 This entry represents a region of 130 amino acids that is the most conserved part of some hypothetical proteins involved in loss of heterozygosity, and thus, tumour suppression []. The exact function of these proteins is not known.
Probab=73.00 E-value=19 Score=26.29 Aligned_cols=48 Identities=21% Similarity=0.327 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHhhC
Q 034185 30 TVFVQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDLRAEMG 77 (102)
Q Consensus 30 T~~Vq~LLqQMQ~kFqtMS~~I~~RiDeMg~RIDdLEksI~dLm~qaG 77 (102)
..-|-+|-..+|++|..-++.|...=....+||.+.|..+..++++.+
T Consensus 26 s~~~l~Lc~R~Q~HL~~cA~~Va~~Q~~L~~riKevd~~~~~l~~~~~ 73 (131)
T PF10158_consen 26 SRPVLRLCSRYQEHLNQCAEAVAFDQNALAKRIKEVDQEIAKLLQQMV 73 (131)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667888999999999999999999999999999999999988764
No 40
>PF09903 DUF2130: Uncharacterized protein conserved in bacteria (DUF2130); InterPro: IPR019219 This entry, found in various hypothetical bacterial proteins, has no known function.
Probab=72.95 E-value=21 Score=28.71 Aligned_cols=48 Identities=19% Similarity=0.384 Sum_probs=38.5
Q ss_pred HHHHHHH---HHHHHHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHH
Q 034185 26 TADMTVF---VQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDLR 73 (102)
Q Consensus 26 ~~dLT~~---Vq~LLqQMQ~kFqtMS~~I~~RiDeMg~RIDdLEksI~dLm 73 (102)
..+|+.| ....++-.-.+|..|+..+..-+++|-+.+..+|+.+..|+
T Consensus 186 ~~~l~~fe~~~~~~~~~~~~~~~~~~~~l~ke~~~i~k~~~k~ek~~e~l~ 236 (267)
T PF09903_consen 186 MEDLYNFEEEFRQFIEAIVENFEDMSKDLDKEIKAIDKAWKKREKQIEKLL 236 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455655 22345555677899999999999999999999999999998
No 41
>PRK10884 SH3 domain-containing protein; Provisional
Probab=72.66 E-value=22 Score=27.64 Aligned_cols=51 Identities=16% Similarity=0.314 Sum_probs=36.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHh
Q 034185 25 STADMTVFVQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDLRAE 75 (102)
Q Consensus 25 s~~dLT~~Vq~LLqQMQ~kFqtMS~~I~~RiDeMg~RIDdLEksI~dLm~q 75 (102)
+..+.-.-++.=|++++.+...+-.+.-.+-.+|..+++++++.|.+|.++
T Consensus 90 ~~~~rlp~le~el~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~L~~~ 140 (206)
T PRK10884 90 SLRTRVPDLENQVKTLTDKLNNIDNTWNQRTAEMQQKVAQSDSVINGLKEE 140 (206)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666667777777777777777777777777777777777777766554
No 42
>PRK14127 cell division protein GpsB; Provisional
Probab=72.63 E-value=32 Score=24.66 Aligned_cols=42 Identities=17% Similarity=0.454 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHhhCC
Q 034185 33 VQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDLRAEMGV 78 (102)
Q Consensus 33 Vq~LLqQMQ~kFqtMS~~I~~RiDeMg~RIDdLEksI~dLm~qaG~ 78 (102)
|+..|+++-.-++.+. ..+.++-.++..|++.|.++-.+...
T Consensus 28 VD~FLd~V~~dye~l~----~e~~~Lk~e~~~l~~~l~e~~~~~~~ 69 (109)
T PRK14127 28 VDKFLDDVIKDYEAFQ----KEIEELQQENARLKAQVDELTKQVSV 69 (109)
T ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 4445555555565543 45678888888888888888887663
No 43
>PF06825 HSBP1: Heat shock factor binding protein 1; InterPro: IPR009643 Heat shock factor binding protein 1 (HSBP1) appears to be a negative regulator of the heat shock response [].; PDB: 3CI9_A.
Probab=72.32 E-value=12 Score=23.89 Aligned_cols=35 Identities=34% Similarity=0.486 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHH
Q 034185 39 QMQSRFQTMSDSIVTKIDEMGNRINELEQSINDLR 73 (102)
Q Consensus 39 QMQ~kFqtMS~~I~~RiDeMg~RIDdLEksI~dLm 73 (102)
-+|+=++.|.+.+-+-=+.+-.|||+.-+.|.+|=
T Consensus 7 ~v~~lL~qmq~kFq~mS~~I~~riDeM~~RIDdLE 41 (54)
T PF06825_consen 7 FVQNLLQQMQDKFQTMSDQILGRIDEMSSRIDDLE 41 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 34444444444433333444567777777777663
No 44
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=72.13 E-value=21 Score=22.14 Aligned_cols=37 Identities=14% Similarity=0.514 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHh
Q 034185 35 NLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDLRAE 75 (102)
Q Consensus 35 ~LLqQMQ~kFqtMS~~I~~RiDeMg~RIDdLEksI~dLm~q 75 (102)
..+++|+.++..++ ...+.+..+++.|++.+..|-.+
T Consensus 26 ~~~~~Le~~~~~L~----~en~~L~~~~~~L~~~~~~L~~e 62 (64)
T PF00170_consen 26 QYIEELEEKVEELE----SENEELKKELEQLKKEIQSLKSE 62 (64)
T ss_dssp HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhh
Confidence 45677777776655 56677888888888888887654
No 45
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=71.25 E-value=4.3 Score=33.61 Aligned_cols=24 Identities=42% Similarity=0.757 Sum_probs=15.2
Q ss_pred HHHHhHHHHhhhHHHHHHHHHHHH
Q 034185 50 SIVTKIDEMGNRINELEQSINDLR 73 (102)
Q Consensus 50 ~I~~RiDeMg~RIDdLEksI~dLm 73 (102)
.|-.|||++..||.+||..+.++-
T Consensus 141 ~l~~Ri~e~Eeris~lEd~~~~i~ 164 (370)
T PF02994_consen 141 SLNSRIDELEERISELEDRIEEIE 164 (370)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHh
Confidence 455777777777777777776643
No 46
>PF05440 MtrB: Tetrahydromethanopterin S-methyltransferase subunit B; InterPro: IPR008690 The N5-methyltetrahydromethanopterin: coenzyme M (2.1.1.86 from EC) of Methanosarcina mazei Go1 is a membrane-associated, corrinoid-containing protein that uses a transmethylation reaction to drive an energy-conserving sodium ion pump [].; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0015948 methanogenesis, 0016021 integral to membrane
Probab=71.09 E-value=6.4 Score=28.03 Aligned_cols=32 Identities=22% Similarity=0.428 Sum_probs=26.1
Q ss_pred hHHHHhhhHHHHHHHHHHHHHhhCCCCCCCCC
Q 034185 54 KIDEMGNRINELEQSINDLRAEMGVEGSPSPL 85 (102)
Q Consensus 54 RiDeMg~RIDdLEksI~dLm~qaG~e~~p~~s 85 (102)
-+|..-.|||.||+-..||++....++++-.|
T Consensus 31 s~~pi~eqi~kLe~~addl~nsLdP~~~~l~S 62 (97)
T PF05440_consen 31 SMDPINEQIDKLEKAADDLVNSLDPRTPPLNS 62 (97)
T ss_pred echHHHHHHHHHHHHHHHHHhccCCCCCcccc
Confidence 36778889999999999999998766665444
No 47
>KOG4117 consensus Heat shock factor binding protein [Transcription; Posttranslational modification, protein turnover, chaperones]
Probab=70.86 E-value=20 Score=24.50 Aligned_cols=39 Identities=21% Similarity=0.342 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhHHHHH
Q 034185 28 DMTVFVQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELE 66 (102)
Q Consensus 28 dLT~~Vq~LLqQMQ~kFqtMS~~I~~RiDeMg~RIDdLE 66 (102)
-|-+-+|.-+|.|.+..=+=.+.+-+||||.-.-|.||=
T Consensus 23 ~lLQq~QDkFQtMSDQII~RiDDM~~riDDLEKnIaDLm 61 (73)
T KOG4117|consen 23 GLLQQTQDKFQTMSDQIIGRIDDMSSRIDDLEKNIADLM 61 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHH
Confidence 344444444554444333333333366666666666663
No 48
>KOG4559 consensus Uncharacterized conserved protein [Function unknown]
Probab=70.79 E-value=25 Score=25.98 Aligned_cols=45 Identities=22% Similarity=0.532 Sum_probs=33.3
Q ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHH
Q 034185 27 ADMTVFVQNL---LQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDL 72 (102)
Q Consensus 27 ~dLT~~Vq~L---LqQMQ~kFqtMS~~I~~RiDeMg~RIDdLEksI~dL 72 (102)
.|+.++.++| |..+.-||+.+.. .+..||+|+.-.|.||..-.-|
T Consensus 68 ~DMk~iAEkla~k~deLn~KfenL~P-~lqQIDaiddst~kLEaAa~~L 115 (120)
T KOG4559|consen 68 KDMKQIAEKLAGKLDELNLKFENLAP-MLQQIDAIDDSTDKLEAAAAKL 115 (120)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHH-HHHHHHHHhhHHHHHHHHHHHH
Confidence 3555555555 7888889998754 5678999999999999865544
No 49
>PF11074 DUF2779: Domain of unknown function(DUF2779); InterPro: IPR021301 This domain is conserved in bacteria. The function is not known.
Probab=70.35 E-value=15 Score=26.47 Aligned_cols=38 Identities=16% Similarity=0.429 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHH----------HHHHHHHHHHhHHHHhhhHHHHHHHHHHHH
Q 034185 30 TVFVQNLLQQMQSR----------FQTMSDSIVTKIDEMGNRINELEQSINDLR 73 (102)
Q Consensus 30 T~~Vq~LLqQMQ~k----------FqtMS~~I~~RiDeMg~RIDdLEksI~dLm 73 (102)
..++++|++.+..+ |+. +||.||+.+..++++.|..+.
T Consensus 58 ~~~~~~L~~~i~~~~g~ivvyN~sfE~------~rL~ela~~~p~~~~~l~~I~ 105 (130)
T PF11074_consen 58 RELIEALIKAIGSIYGSIVVYNKSFEK------TRLKELAELFPDYAEKLNSII 105 (130)
T ss_pred HHHHHHHHHHhhhhcCeEEEechHHHH------HHHHHHHHHhHHHHHHHHHHH
Confidence 56899999999998 875 577777776666666665554
No 50
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=69.75 E-value=22 Score=22.89 Aligned_cols=21 Identities=24% Similarity=0.436 Sum_probs=11.1
Q ss_pred HHhhhHHHHHHHHHHHHHhhC
Q 034185 57 EMGNRINELEQSINDLRAEMG 77 (102)
Q Consensus 57 eMg~RIDdLEksI~dLm~qaG 77 (102)
+-..+||.|++.+..|..+..
T Consensus 29 ~Qq~~I~~L~~~l~~L~~rl~ 49 (69)
T PF04102_consen 29 EQQRQIDRLQRQLRLLRERLR 49 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHT--
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666666655543
No 51
>PRK00965 tetrahydromethanopterin S-methyltransferase subunit B; Provisional
Probab=69.38 E-value=6.8 Score=27.87 Aligned_cols=31 Identities=26% Similarity=0.423 Sum_probs=25.1
Q ss_pred HHHHhhhHHHHHHHHHHHHHhhCCCCCCCCC
Q 034185 55 IDEMGNRINELEQSINDLRAEMGVEGSPSPL 85 (102)
Q Consensus 55 iDeMg~RIDdLEksI~dLm~qaG~e~~p~~s 85 (102)
+|..-.|||.||+-..||++.....+++-.|
T Consensus 33 ~~pi~E~i~kLe~~addL~nsLdP~~~~l~S 63 (96)
T PRK00965 33 MDPIEEEINKLEALADDLENSLDPRNPPLNS 63 (96)
T ss_pred chHHHHHHHHHHHHHHHHHhccCCCCChhhc
Confidence 5777889999999999999988766655444
No 52
>PF07439 DUF1515: Protein of unknown function (DUF1515); InterPro: IPR010889 This family consists of several hypothetical bacterial proteins of around 130 residues in length. Members of this family seem to be found exclusively in Rhizobium species. The function of this family is unknown.
Probab=69.29 E-value=22 Score=26.11 Aligned_cols=27 Identities=33% Similarity=0.623 Sum_probs=22.2
Q ss_pred HHHHHhHHHHhhhHHHHHHHHHHHHHh
Q 034185 49 DSIVTKIDEMGNRINELEQSINDLRAE 75 (102)
Q Consensus 49 ~~I~~RiDeMg~RIDdLEksI~dLm~q 75 (102)
..+-.||||+-.|+-.||.++..|-+.
T Consensus 36 a~mhrRlDElV~Rv~~lEs~~~~lk~d 62 (112)
T PF07439_consen 36 ASMHRRLDELVERVTTLESSVSTLKAD 62 (112)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHhh
Confidence 346789999999999999998877553
No 53
>PF05929 Phage_GPO: Phage capsid scaffolding protein (GPO) serine peptidase; InterPro: IPR009228 This entry is represented by Bacteriophage P2, GpO. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several bacteriophage capsid scaffolding protein (GpO) and some related bacterial sequences. GpO is thought to function in both the assembly of proheads and the cleavage of GpN [].; GO: 0019069 viral capsid assembly
Probab=68.36 E-value=47 Score=27.24 Aligned_cols=57 Identities=14% Similarity=0.236 Sum_probs=40.5
Q ss_pred CHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHhhCCCCC
Q 034185 25 STADMTVFVQNLLQQMQSR-------FQTMSDSIVTKIDEMGNRINELEQSINDLRAEMGVEGS 81 (102)
Q Consensus 25 s~~dLT~~Vq~LLqQMQ~k-------FqtMS~~I~~RiDeMg~RIDdLEksI~dLm~qaG~e~~ 81 (102)
...+|...|+.+-++.++. |.....++-..-.++..+++.|.+.+++|.++......
T Consensus 193 ~~~~~~~ave~ia~~~~~~~~~~~~~ls~~~~~~~~~~~~l~~~~~~~~~~f~~L~~~L~~~~~ 256 (276)
T PF05929_consen 193 QFADLQQAVEAIAEQQQELEEAFEEQLSEQETQVAELKQELKEQHEALTEDFAALKEKLSSTDA 256 (276)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhCCCC
Confidence 4567777777777776653 43444555555677888889999999999998665444
No 54
>PF04546 Sigma70_ner: Sigma-70, non-essential region; InterPro: IPR007631 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. This domain is found in the primary vegetative sigma factor. Its function is unclear, and it can be removed without apparent loss of function [, ].; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 1SIG_A 3IYD_F.
Probab=67.00 E-value=5 Score=30.24 Aligned_cols=48 Identities=25% Similarity=0.371 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHH------HHHHHHHHhHHHHhhhHHHHHHHHHHHH-HhhCCC
Q 034185 32 FVQNLLQQMQSRFQ------TMSDSIVTKIDEMGNRINELEQSINDLR-AEMGVE 79 (102)
Q Consensus 32 ~Vq~LLqQMQ~kFq------tMS~~I~~RiDeMg~RIDdLEksI~dLm-~qaG~e 79 (102)
-.+.++++|..-|. ..-+.++..|-++-.||..+|+.|-+|. .++|+.
T Consensus 107 ~~~~~~~~l~~~~~~ikl~~k~id~L~~~lr~~~~~Ir~~Er~i~~l~v~~~gmp 161 (211)
T PF04546_consen 107 KYQKLREELAEEFMEIKLSPKQIDRLVEQLREIVERIRQQERRIMRLCVRRAGMP 161 (211)
T ss_dssp HHHHHHHHHHHHHTTCEE-HHHHHHHCHHHHCCCHHHHHHHHHHHHCCCTTTT--
T ss_pred HHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 46778888888876 4567777888888999999999999998 888864
No 55
>PF15207 TMEM240: TMEM240 family
Probab=66.81 E-value=2.4 Score=33.02 Aligned_cols=12 Identities=50% Similarity=1.564 Sum_probs=11.2
Q ss_pred hchhhhHHhhcC
Q 034185 5 ICSNWLLFWQDG 16 (102)
Q Consensus 5 ~~~~~~~~~~~~ 16 (102)
+|..|+|.||||
T Consensus 98 fcisw~l~wmdg 109 (180)
T PF15207_consen 98 FCISWFLVWMDG 109 (180)
T ss_pred HHHHHHHHHHhh
Confidence 689999999998
No 56
>PF12841 YvrJ: YvrJ protein family; InterPro: IPR024419 This entry is represents a family of uncharacterised protein. The function of the Bacillus subtilis YvrJ protein is not known, but its expression is regulated by the cell envelope stress-inducible sigma factor YvrI [].
Probab=66.66 E-value=6.8 Score=23.49 Aligned_cols=17 Identities=35% Similarity=0.704 Sum_probs=12.9
Q ss_pred HhhhHHHHHHHHHHHHH
Q 034185 58 MGNRINELEQSINDLRA 74 (102)
Q Consensus 58 Mg~RIDdLEksI~dLm~ 74 (102)
|-+|||+|.++|.+|.+
T Consensus 20 ~E~kld~L~~~i~~L~~ 36 (38)
T PF12841_consen 20 IEKKLDELTESINELSE 36 (38)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 45788888888888765
No 57
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=66.06 E-value=40 Score=27.84 Aligned_cols=45 Identities=18% Similarity=0.364 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----HHhHHHHhhhHHHHHHHHHHHH
Q 034185 29 MTVFVQNLLQQMQSRFQTMSDSI-----VTKIDEMGNRINELEQSINDLR 73 (102)
Q Consensus 29 LT~~Vq~LLqQMQ~kFqtMS~~I-----~~RiDeMg~RIDdLEksI~dLm 73 (102)
|...++..|++-+.+|+.+...+ ..+|.....|+|+|++.+...+
T Consensus 321 L~~a~~~~L~~~~~~L~~l~~rL~~lsP~~~L~r~~qrL~~L~~rL~~a~ 370 (438)
T PRK00286 321 LQRALERRLRLAKQRLERLSQRLQQQNPQRRIERAQQRLEQLEQRLRRAM 370 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555565555444 2455666677777776655444
No 58
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=66.00 E-value=33 Score=25.09 Aligned_cols=44 Identities=16% Similarity=0.390 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHh
Q 034185 28 DMTVFVQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDLRAE 75 (102)
Q Consensus 28 dLT~~Vq~LLqQMQ~kFqtMS~~I~~RiDeMg~RIDdLEksI~dLm~q 75 (102)
-|+.+|..+=+|| +.+|+.|-.-=+.++.|||.|..++.+.++-
T Consensus 40 ~m~~A~~~v~kql----~~vs~~l~~tKkhLsqRId~vd~klDe~~ei 83 (126)
T PF07889_consen 40 SMSDAVASVSKQL----EQVSESLSSTKKHLSQRIDRVDDKLDEQKEI 83 (126)
T ss_pred hHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 3555565555554 4566666666788888888888888877653
No 59
>PRK11546 zraP zinc resistance protein; Provisional
Probab=65.16 E-value=52 Score=24.70 Aligned_cols=51 Identities=18% Similarity=0.343 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH----------hhhHHHHHHHHHHHHHhh
Q 034185 26 TADMTVFVQNLLQQMQSRFQTMSDSIVTKIDEM----------GNRINELEQSINDLRAEM 76 (102)
Q Consensus 26 ~~dLT~~Vq~LLqQMQ~kFqtMS~~I~~RiDeM----------g~RIDdLEksI~dLm~qa 76 (102)
++|=-+.+|.+.+.-+.+...+=++|..|=.|+ ..+|..|-+.|.+|..+.
T Consensus 45 T~EQQa~~q~I~~~f~~~t~~LRqqL~aKr~ELnALl~~~~pD~~kI~aL~kEI~~Lr~kL 105 (143)
T PRK11546 45 TTEQQAAWQKIHNDFYAQTSALRQQLVSKRYEYNALLTANPPDSSKINAVAKEMENLRQSL 105 (143)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 344455666777777777778888888887777 457888888888877554
No 60
>PF11101 DUF2884: Protein of unknown function (DUF2884); InterPro: IPR021307 Some members in this bacterial family of proteins are annotated as YggN which currently has no known function.
Probab=64.85 E-value=28 Score=27.04 Aligned_cols=50 Identities=14% Similarity=0.290 Sum_probs=28.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHH
Q 034185 25 STADMTVFVQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDLRA 74 (102)
Q Consensus 25 s~~dLT~~Vq~LLqQMQ~kFqtMS~~I~~RiDeMg~RIDdLEksI~dLm~ 74 (102)
..++|..=+.+|=++++.+++.=+..+-.|=+++..|+..|++.=..|..
T Consensus 168 ~l~~~~~~m~~l~~~ie~~~~~q~~~le~~a~~lC~~l~~L~~~E~~L~~ 217 (229)
T PF11101_consen 168 NLQAFEQRMEGLQQQIEQEMEAQAQELEQKAQALCDSLQQLDQQEQQLQQ 217 (229)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555556555555555556666666555555444444
No 61
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=64.32 E-value=44 Score=27.04 Aligned_cols=66 Identities=15% Similarity=0.231 Sum_probs=46.1
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHhhCCCCCC
Q 034185 17 HDSEDPKQSTADMTVFVQNLLQQM----QSRFQTMSDSIVTKIDEMGNRINELEQSINDLRAEMGVEGSP 82 (102)
Q Consensus 17 ~~s~dpkqs~~dLT~~Vq~LLqQM----Q~kFqtMS~~I~~RiDeMg~RIDdLEksI~dLm~qaG~e~~p 82 (102)
..+.||.....=+.++++..++.- ...-......+-.++.+...++++.|+.+.+...+.|+-.+.
T Consensus 138 ~~~~dp~~A~~i~n~~~~~y~~~~~~~~~~~~~~~~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~i~~~~ 207 (444)
T TIGR03017 138 FSGVDPRFAATVANAFAQAYIDTNIELKVEPAQKAALWFVQQIAALREDLARAQSKLSAYQQEKGIVSSD 207 (444)
T ss_pred EeCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccC
Confidence 456677743333344444444322 223345677888999999999999999999999999987543
No 62
>PF00103 Hormone_1: Somatotropin hormone family; InterPro: IPR001400 Somatotropin is a hormone that plays an important role in growth control. It belongs to a family that includes choriomammotropin (lactogen), its placental analogue; prolactin, which promotes lactation in the mammary gland, and placental prolactin-related proteins; proliferin and proliferin related protein; and somatolactin from various fish [, , , ]. The 3D structure of bovine somatotropin has been predicted using a combination of heuristics and energy minimisation [].; GO: 0005179 hormone activity, 0005576 extracellular region; PDB: 3HHR_A 1HUW_A 1KF9_D 1HGU_A 1HWG_A 1AXI_A 1A22_A 1BP3_A 1HWH_A 1F6F_A ....
Probab=63.75 E-value=21 Score=27.27 Aligned_cols=53 Identities=26% Similarity=0.451 Sum_probs=41.4
Q ss_pred CHHHHHHHHHHHHH-------HHHHHH---HHHHHHHHHhHHHHhhhHHHHHHHHHHHHHhhC
Q 034185 25 STADMTVFVQNLLQ-------QMQSRF---QTMSDSIVTKIDEMGNRINELEQSINDLRAEMG 77 (102)
Q Consensus 25 s~~dLT~~Vq~LLq-------QMQ~kF---qtMS~~I~~RiDeMg~RIDdLEksI~dLm~qaG 77 (102)
+..+|..++-.||+ .+..-. ...++.|+.|.-++..++.+|++-|..++.+.+
T Consensus 89 s~~~LL~~~l~Ll~sW~~PL~~L~~~l~~~~~~~~~ilsk~~~i~~k~~~L~egi~~i~~~~~ 151 (214)
T PF00103_consen 89 SDEDLLKLSLSLLQSWNEPLQHLVTELSSLPEAPDAILSKAKEIEEKIKELLEGIKKILSKMQ 151 (214)
T ss_dssp -HHHHHHHHHHHHHCTCCHHHHHHHHHHCCCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred cHHHHHHHHHHHHHHHHhHHHHHHHHHhccCCCcHHHhchHHHHHHHHHHHHHHHHHHHHhhc
Confidence 45677777777754 444332 345789999999999999999999999999988
No 63
>COG5570 Uncharacterized small protein [Function unknown]
Probab=63.52 E-value=8.9 Score=25.21 Aligned_cols=30 Identities=17% Similarity=0.317 Sum_probs=26.0
Q ss_pred HHHhHHHHhhhHHHHHHHHHHHHHhhCCCC
Q 034185 51 IVTKIDEMGNRINELEQSINDLRAEMGVEG 80 (102)
Q Consensus 51 I~~RiDeMg~RIDdLEksI~dLm~qaG~e~ 80 (102)
|-++|++.++|=-+||+.|.+-|+.-+++.
T Consensus 3 ieshl~eL~kkHg~le~ei~ea~n~Ps~dd 32 (57)
T COG5570 3 IESHLAELEKKHGNLEREIQEAMNSPSSDD 32 (57)
T ss_pred HHHHHHHHHHhhchHHHHHHHHhcCCCcch
Confidence 678999999999999999999998766554
No 64
>PHA03386 P10 fibrous body protein; Provisional
Probab=62.79 E-value=54 Score=23.45 Aligned_cols=32 Identities=16% Similarity=0.418 Sum_probs=19.3
Q ss_pred HHhHHHHhhhHHHHHHHHHHHHHhhCCCCCCC
Q 034185 52 VTKIDEMGNRINELEQSINDLRAEMGVEGSPS 83 (102)
Q Consensus 52 ~~RiDeMg~RIDdLEksI~dLm~qaG~e~~p~ 83 (102)
..++|..+..+++|...|+++-.=.+.+..|.
T Consensus 35 ~~~LDa~~~qL~~l~tkV~~Iq~iLn~d~iPd 66 (94)
T PHA03386 35 SQPLDGLPAQLTELDTKVSDIQSILTGDEVPD 66 (94)
T ss_pred chhhhhHHHHHHHHHHHHHHHHHhcCcccCCC
Confidence 34577777777777776665555544453333
No 65
>PF14071 YlbD_coat: Putative coat protein
Probab=62.63 E-value=14 Score=27.36 Aligned_cols=26 Identities=19% Similarity=0.451 Sum_probs=14.3
Q ss_pred HHHhhhHHHHHH---HHHHHHHhhCCCCC
Q 034185 56 DEMGNRINELEQ---SINDLRAEMGVEGS 81 (102)
Q Consensus 56 DeMg~RIDdLEk---sI~dLm~qaG~e~~ 81 (102)
++|..-|+.+.+ +|+.++.|......
T Consensus 80 nq~q~hl~~~sqai~~vQ~~l~qFq~~~~ 108 (124)
T PF14071_consen 80 NQMQKHLNNVSQAIGSVQQVLSQFQGNGQ 108 (124)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 444555555544 45667777664433
No 66
>PF02646 RmuC: RmuC family; InterPro: IPR003798 This protein contains several bacterial RmuC DNA recombination proteins. The function of the RMUC protein is unknown but it is suspected that it is either a structural protein that protects DNA against nuclease action, or is itself involved in DNA cleavage at the regions of DNA secondary structures []. Proteins in this family are predicted to contain a central endonuclease-like fold domain, surrounded by coiled coils, consistent with a direct role in DNA cleavage [, ].
Probab=62.44 E-value=29 Score=27.80 Aligned_cols=41 Identities=17% Similarity=0.395 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHhh
Q 034185 32 FVQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDLRAEM 76 (102)
Q Consensus 32 ~Vq~LLqQMQ~kFqtMS~~I~~RiDeMg~RIDdLEksI~dLm~qa 76 (102)
-|..++..|.++|..+ ..+++.+|+.|+.+-+++++++...
T Consensus 237 ~I~~~~~~l~~~~~~~----~~~~~~l~k~l~~a~~~~~~~~~~~ 277 (304)
T PF02646_consen 237 EIAELAGKLYDRFGKF----VEHLEKLGKSLDKAVKSYNKAVGSL 277 (304)
T ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566677777554 4777888888888888888887653
No 67
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=61.86 E-value=40 Score=21.66 Aligned_cols=26 Identities=19% Similarity=0.434 Sum_probs=13.7
Q ss_pred HhHHHHhhhHHHHHHHHHHHHHhhCC
Q 034185 53 TKIDEMGNRINELEQSINDLRAEMGV 78 (102)
Q Consensus 53 ~RiDeMg~RIDdLEksI~dLm~qaG~ 78 (102)
..||.+-.+|..|...|.++-...+.
T Consensus 32 ~~I~~L~~~l~~L~~rl~~~~~~~~~ 57 (69)
T PF04102_consen 32 RQIDRLQRQLRLLRERLRELEDPSGS 57 (69)
T ss_dssp HHHHHHHHHHHHHHHT----------
T ss_pred HHHHHHHHHHHHHHHHHHHhccccCC
Confidence 56888888899999988888755443
No 68
>PF06937 EURL: EURL protein; InterPro: IPR009704 This family consists of several animal EURL proteins. EURL is preferentially expressed in chick retinal precursor cells as well as in the anterior epithelial cells of the lens at early stages of development. EURL transcripts are found primarily in the peripheral dorsal retina, i.e., the most undifferentiated part of the dorsal retina. EURL transcripts are also detected in the lens at stage 18 and remain abundant in the proliferating epithelial cells of the lens until at least day 11. The distribution pattern of EURL in the developing retina and lens suggest a role before the events leading to cell determination and differentiation [].
Probab=61.65 E-value=18 Score=30.19 Aligned_cols=38 Identities=21% Similarity=0.469 Sum_probs=30.3
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhH
Q 034185 24 QSTADMTVFVQNLLQQMQSRFQTMSDSIVTKIDEMGNRI 62 (102)
Q Consensus 24 qs~~dLT~~Vq~LLqQMQ~kFqtMS~~I~~RiDeMg~RI 62 (102)
.+..||-+++..|++|+|+.|..+..++-.| |-.++.|
T Consensus 219 Mt~~EL~qL~~~L~~qIq~vfeeLt~~vQEK-DsLaSEl 256 (285)
T PF06937_consen 219 MTLDELKQLNEKLLQQIQDVFEELTQQVQEK-DSLASEL 256 (285)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 4678999999999999999999998887655 4444433
No 69
>PRK04406 hypothetical protein; Provisional
Probab=61.15 E-value=8.1 Score=25.75 Aligned_cols=17 Identities=6% Similarity=0.192 Sum_probs=9.9
Q ss_pred hhHHHHHHHHHHHHHhh
Q 034185 60 NRINELEQSINDLRAEM 76 (102)
Q Consensus 60 ~RIDdLEksI~dLm~qa 76 (102)
..||.|++.+..|..+.
T Consensus 39 ~~I~~L~~ql~~L~~rl 55 (75)
T PRK04406 39 LLITKMQDQMKYVVGKV 55 (75)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34566666666665554
No 70
>PF13887 MRF_C1: Myelin gene regulatory factor -C-terminal domain 1
Probab=60.21 E-value=6.3 Score=23.85 Aligned_cols=12 Identities=50% Similarity=0.880 Sum_probs=9.3
Q ss_pred HHHhhhHHHHHH
Q 034185 56 DEMGNRINELEQ 67 (102)
Q Consensus 56 DeMg~RIDdLEk 67 (102)
|...+|||+||+
T Consensus 24 ~~Le~rI~ele~ 35 (36)
T PF13887_consen 24 DNLETRIDELER 35 (36)
T ss_pred ccHHHHHHHHhh
Confidence 777788888875
No 71
>KOG0500 consensus Cyclic nucleotide-gated cation channel CNGA1-3 and related proteins [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=59.83 E-value=60 Score=29.36 Aligned_cols=56 Identities=18% Similarity=0.245 Sum_probs=48.6
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHH
Q 034185 18 DSEDPKQSTADMTVFVQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDLR 73 (102)
Q Consensus 18 ~s~dpkqs~~dLT~~Vq~LLqQMQ~kFqtMS~~I~~RiDeMg~RIDdLEksI~dLm 73 (102)
+..+|+.+.++.....++.+..+|.||..+-+++-+..-.|..|+-.||..+.-..
T Consensus 451 ~~~~~~d~~E~~~~~Le~~~~~l~~Rl~~i~~e~~~~~~km~qr~~~le~~~~~~~ 506 (536)
T KOG0500|consen 451 AMQDPSDDEEKRDESLENEVVLLQLRLARILDEYHSSQQKMKQRLSVLEKQLKPGI 506 (536)
T ss_pred hccCcccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHhhhhc
Confidence 34466656778888889999999999999999999999999999999999998883
No 72
>PF01895 PhoU: PhoU domain; InterPro: IPR008170 This family contains phosphate regulatory proteins including PhoU. PhoU proteins are known to play a role in the regulation of phosphate uptake. The PhoU domain is composed of a three helix bundle []. The PhoU protein contains two copies of this domain. The domain binds to an iron cluster via its conserved E/DXXXD motif. Deletion of PhoU activates constitutive expression of the phosphate ABC transporter and allows phosphate transport, but causes a growth defect; suggesting that the protein has some secondary function []. ; PDB: 2I0M_A 1T72_B 1T8B_A 1SUM_B 1VCT_A 2BKN_A 2BKP_A 2BKO_A.
Probab=59.61 E-value=36 Score=20.40 Aligned_cols=45 Identities=20% Similarity=0.373 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHH
Q 034185 28 DMTVFVQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDL 72 (102)
Q Consensus 28 dLT~~Vq~LLqQMQ~kFqtMS~~I~~RiDeMg~RIDdLEksI~dL 72 (102)
+|...|..+|...-.=|.+-......++-++-.+||+|...+.+-
T Consensus 3 ~m~~~~~~~l~~~~~~~~~~d~~~a~~i~~~e~~id~~~~~~~~~ 47 (88)
T PF01895_consen 3 EMGELVEEMLDDAIEAFEERDSELAQEIIQLEEEIDELYREIRRQ 47 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 456667777777777777666666677777777777777776443
No 73
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=59.54 E-value=52 Score=22.19 Aligned_cols=20 Identities=15% Similarity=0.481 Sum_probs=8.4
Q ss_pred HhHHHHhhhHHHHHHHHHHH
Q 034185 53 TKIDEMGNRINELEQSINDL 72 (102)
Q Consensus 53 ~RiDeMg~RIDdLEksI~dL 72 (102)
.+|+.+...+++|++.+.++
T Consensus 77 ~~i~~l~~~~~~l~~~~~el 96 (105)
T cd00632 77 LRIKRLERQEEDLQEKLKEL 96 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444443
No 74
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=59.31 E-value=32 Score=22.23 Aligned_cols=36 Identities=25% Similarity=0.609 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHH---HHhHHHHhhhHHHHHHHHHHHH
Q 034185 38 QQMQSRFQTMSDSI---VTKIDEMGNRINELEQSINDLR 73 (102)
Q Consensus 38 qQMQ~kFqtMS~~I---~~RiDeMg~RIDdLEksI~dLm 73 (102)
|+++.+|+.+-.++ ..+|..+.+.+++++-.+.+|.
T Consensus 1 Qe~~~~~~~l~~~l~~~~~q~~~l~~~~~~~~~~~~eL~ 39 (106)
T PF01920_consen 1 QELQNKFQELNQQLQQLEQQIQQLERQLRELELTLEELE 39 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777776655332 2333444444444444444443
No 75
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=59.13 E-value=82 Score=26.49 Aligned_cols=56 Identities=20% Similarity=0.438 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHH--------------hHHHHhhhHHHHHHHHHHHHHh-----hCCCCCCCCCCCCCCCC
Q 034185 37 LQQMQSRFQTMSDSIVT--------------KIDEMGNRINELEQSINDLRAE-----MGVEGSPSPLTPSKTNS 92 (102)
Q Consensus 37 LqQMQ~kFqtMS~~I~~--------------RiDeMg~RIDdLEksI~dLm~q-----aG~e~~p~~s~~~~~~~ 92 (102)
+++++.+....|.+|-. ++.++..+|..||+.+.++-.+ ..+.+.+.+++|.-..+
T Consensus 46 ~~~l~~erN~~sk~i~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~lPN~~~~~vP~g~~~ 120 (418)
T TIGR00414 46 IEELQAKRNELSKQIGKAKGQKKDKIEEIKKELKELKEELTELSAALKALEAELQDKLLSIPNIPHESVPVGKDE 120 (418)
T ss_pred HHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccCCCCCCc
Confidence 66777777777766633 3455666777776666554432 24788888888765433
No 76
>PRK11166 chemotaxis regulator CheZ; Provisional
Probab=59.09 E-value=43 Score=26.55 Aligned_cols=32 Identities=19% Similarity=0.353 Sum_probs=27.7
Q ss_pred HHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHhhCC
Q 034185 44 FQTMSDSIVTKIDEMGNRINELEQSINDLRAEMGV 78 (102)
Q Consensus 44 FqtMS~~I~~RiDeMg~RIDdLEksI~dLm~qaG~ 78 (102)
||.+..|+|.|+=++ |.++|+++..|+...+.
T Consensus 141 FQDLTGQvI~kVi~~---v~~vE~~L~~ll~~~~~ 172 (214)
T PRK11166 141 FQDLTGQVIKRMMDV---IQEIERQLLMVLLENIP 172 (214)
T ss_pred chHhHhHHHHHHHHH---HHHHHHHHHHHHHHhCc
Confidence 999999999998665 77899999999987764
No 77
>PRK00846 hypothetical protein; Provisional
Probab=59.07 E-value=20 Score=24.32 Aligned_cols=20 Identities=15% Similarity=0.101 Sum_probs=11.1
Q ss_pred HhhhHHHHHHHHHHHHHhhC
Q 034185 58 MGNRINELEQSINDLRAEMG 77 (102)
Q Consensus 58 Mg~RIDdLEksI~dLm~qaG 77 (102)
....||.|.+.|.-|..+..
T Consensus 39 qq~~I~~L~~ql~~L~~rL~ 58 (77)
T PRK00846 39 ARLTGARNAELIRHLLEDLG 58 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44456666666665555543
No 78
>PRK06771 hypothetical protein; Provisional
Probab=59.02 E-value=24 Score=25.00 Aligned_cols=25 Identities=20% Similarity=0.425 Sum_probs=22.2
Q ss_pred HhhhHHHHHHHHHHHHHhhCCCCCC
Q 034185 58 MGNRINELEQSINDLRAEMGVEGSP 82 (102)
Q Consensus 58 Mg~RIDdLEksI~dLm~qaG~e~~p 82 (102)
|-+|+..+|..++-++.+.|+.++.
T Consensus 28 ~~~~~k~ie~~L~~I~~~~Gi~~~~ 52 (93)
T PRK06771 28 TDARLKRMEDRLQLITKEMGIVDRE 52 (93)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCc
Confidence 4459999999999999999998875
No 79
>PF07400 IL11: Interleukin 11; InterPro: IPR020438 Interleukins (IL) are a group of cytokines that play an important role in the immune system. They modulate inflammation and immunity by regulating growth, mobility and differentiation of lymphoid and other cells. Interleukin-11 (IL-11) is a pleiotropic cytokine that stimulates megakaryocytopoiesis, resulting in increased production of platelets, as well as activating osteoclasts, inhibiting epithelial cell proliferation and apoptosis, and inhibiting macrophage mediator production. These functions may be particularly important in mediating the hematopoietic, osseous and mucosal protective effects of IL-11 []. The cytokine also possesses anti-inflammatory activity, and has been proposed as a therapeutic agent in the treatment of chronic inflammatory diseases, such as Crohn's disease and rheumatoid arthritis [].
Probab=58.83 E-value=24 Score=28.20 Aligned_cols=37 Identities=22% Similarity=0.402 Sum_probs=27.5
Q ss_pred HhHHHHhhhHHHHHHHHHHHHHhhCCC--CCCCCCCCCC
Q 034185 53 TKIDEMGNRINELEQSINDLRAEMGVE--GSPSPLTPSK 89 (102)
Q Consensus 53 ~RiDeMg~RIDdLEksI~dLm~qaG~e--~~p~~s~~~~ 89 (102)
-++-+|.+||+.|=+.|.-+|...... .+++|++|..
T Consensus 124 p~lg~~~s~l~~Ll~~lq~lM~rl~~pq~~p~~PspP~~ 162 (199)
T PF07400_consen 124 PELGTMHSRLKRLLNRLQLLMSRLELPQLTPPSPSPPLP 162 (199)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCCC
Confidence 356689999999999999999877655 4445665553
No 80
>TIGR02135 phoU_full phosphate transport system regulatory protein PhoU. This model describes PhoU, a regulatory protein of unknown mechanism for high-affinity phosphate ABC transporter systems. The protein consists of two copies of the domain described by Pfam model pfam01895. Deletion of PhoU activates constitutive expression of the phosphate ABC transporter and allows phosphate transport, but causes a growth defect and so likely has some second function.
Probab=58.48 E-value=53 Score=22.92 Aligned_cols=47 Identities=21% Similarity=0.286 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHH
Q 034185 26 TADMTVFVQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDL 72 (102)
Q Consensus 26 ~~dLT~~Vq~LLqQMQ~kFqtMS~~I~~RiDeMg~RIDdLEksI~dL 72 (102)
...|...|...|...-.=|.+-......+|-++-.+||.|+..|...
T Consensus 14 l~~m~~~~~~ml~~~~~~~~~~d~~~~~~i~~~e~~id~l~~~i~~~ 60 (212)
T TIGR02135 14 LLEMGGLVEEQLEDAVRALTEKDRELARKVIEDDDQINALEVKIEEK 60 (212)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHChHHHHHHHHHHHHH
Confidence 34556666777777777777666678888989999999999998763
No 81
>smart00338 BRLZ basic region leucin zipper.
Probab=58.18 E-value=42 Score=20.73 Aligned_cols=36 Identities=11% Similarity=0.438 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHh
Q 034185 36 LLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDLRAE 75 (102)
Q Consensus 36 LLqQMQ~kFqtMS~~I~~RiDeMg~RIDdLEksI~dLm~q 75 (102)
-+++|+.+.+.+. ....++..+++.|+..+..|..+
T Consensus 27 ~~~~Le~~~~~L~----~en~~L~~~~~~l~~e~~~lk~~ 62 (65)
T smart00338 27 EIEELERKVEQLE----AENERLKKEIERLRRELEKLKSE 62 (65)
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777776655 45678888888888888888765
No 82
>PF15136 UPF0449: Uncharacterised protein family UPF0449
Probab=57.66 E-value=22 Score=25.32 Aligned_cols=32 Identities=31% Similarity=0.475 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHH
Q 034185 40 MQSRFQTMSDSIVTKIDEMGNRINELEQSIND 71 (102)
Q Consensus 40 MQ~kFqtMS~~I~~RiDeMg~RIDdLEksI~d 71 (102)
|..|.+...+.+-.|.++|-..-++||+.|.+
T Consensus 65 ~NerLqqa~~~Lkkk~e~L~~age~Le~~i~~ 96 (97)
T PF15136_consen 65 MNERLQQARDQLKKKCEELRQAGEELERDIEQ 96 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 67888888899999999999999999999975
No 83
>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=57.56 E-value=19 Score=29.60 Aligned_cols=11 Identities=55% Similarity=0.857 Sum_probs=6.4
Q ss_pred HHHHHHHHHHH
Q 034185 62 INELEQSINDL 72 (102)
Q Consensus 62 IDdLEksI~dL 72 (102)
|-+||+||.+|
T Consensus 208 ik~LEksi~EL 218 (297)
T KOG0810|consen 208 IKKLEKSIREL 218 (297)
T ss_pred HHHHHHHHHHH
Confidence 44566666655
No 84
>PRK11115 transcriptional regulator PhoU; Provisional
Probab=57.51 E-value=55 Score=24.10 Aligned_cols=51 Identities=14% Similarity=0.260 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHhh
Q 034185 26 TADMTVFVQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDLRAEM 76 (102)
Q Consensus 26 ~~dLT~~Vq~LLqQMQ~kFqtMS~~I~~RiDeMg~RIDdLEksI~dLm~qa 76 (102)
...|...|...|...-+-|.+-......++-++-..||.|+..|.+.....
T Consensus 25 l~~M~~~v~~ml~~~~~al~~~d~~~~~~i~~~e~~id~l~~~I~~~l~~~ 75 (236)
T PRK11115 25 VLTMGGLVEQQLSDAITAMHNQDAELAKRVIEGDHKVNMMEVAIDEACVRI 75 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHChHHHHHHHHHHHHHHHHH
Confidence 345556666666666666666666778888899999999999988655554
No 85
>PF03670 UPF0184: Uncharacterised protein family (UPF0184); InterPro: IPR022788 This family of proteins has no known function.
Probab=57.43 E-value=20 Score=24.94 Aligned_cols=30 Identities=20% Similarity=0.402 Sum_probs=18.5
Q ss_pred HHHHHHHHHhHHHHhhhHHHHHHHHHHHHH
Q 034185 45 QTMSDSIVTKIDEMGNRINELEQSINDLRA 74 (102)
Q Consensus 45 qtMS~~I~~RiDeMg~RIDdLEksI~dLm~ 74 (102)
..+-++|-+.||-+=.|-|+|...+..|+.
T Consensus 32 ns~LD~Lns~LD~LE~rnD~l~~~L~~LLe 61 (83)
T PF03670_consen 32 NSMLDQLNSCLDHLEQRNDHLHAQLQELLE 61 (83)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 344455666666666666666666666654
No 86
>PF03500 Cellsynth_D: Cellulose synthase subunit D; InterPro: IPR022798 Cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues, is the major component of wood and thus paper, and is synthesized by plants, most algae, some bacteria and fungi, and even some animals. The genes that synthesize cellulose in higher plants differ greatly from the well-characterised genes found in Acetobacter and Agrobacterium spp. More correctly designated as "cellulose synthase catalytic subunits", plant cellulose synthase (CesA) proteins are integral membrane proteins, approximately 1,000 amino acids in length. There are a number of highly conserved residues, including several motifs shown to be necessary for processive glycosyltransferase activity []. An operon encoding 4 proteins required for bacterial cellulose biosynthesis (bcs) in Acetobacter xylinus (Gluconacetobacter xylinus) has been isolated via genetic complementation with strains lacking cellulose synthase activity []. Nucleotide sequence analysis showed the cellulose synthase operon to consist of 4 genes, designated bcsA, bcsB, bcsC and bcsD, all of which are required for maximal bacterial cellulose synthesis in A. xylinum. The calculated molecular mass of the protein encoded by bcsD is 17.3kDa []. The function of BcsD is unknown. This entry represents the D subunit from bacterial cellulose synthase.; PDB: 3AJ1_B 3AJ2_A 3A8E_A.
Probab=56.10 E-value=61 Score=24.51 Aligned_cols=45 Identities=22% Similarity=0.488 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHhHHHHhhh------------HHHHHHHHHHHHHhhC
Q 034185 30 TVFVQNLLQQMQSRFQT-MSDSIVTKIDEMGNR------------INELEQSINDLRAEMG 77 (102)
Q Consensus 30 T~~Vq~LLqQMQ~kFqt-MS~~I~~RiDeMg~R------------IDdLEksI~dLm~qaG 77 (102)
+-|++.|.++|.+.-.. =+... |-.||.| +++||++||.+....+
T Consensus 2 ~lFl~aLa~E~~~q~g~~e~~~f---Lr~mG~rlA~r~PLp~~~Tv~~LE~~iN~~la~~~ 59 (144)
T PF03500_consen 2 SLFLRALAEEFEDQAGEEELRAF---LRRMGERLAARHPLPACETVADLERAINAVLARFD 59 (144)
T ss_dssp HHHHHHHHHHHHHHSHHHHHHHH---HHHHHHHHCTTB-----SSHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHhcCHHHHHHH---HHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHhCC
Confidence 45677777766655432 12333 3444444 7999999999988764
No 87
>PLN02678 seryl-tRNA synthetase
Probab=55.97 E-value=96 Score=26.83 Aligned_cols=54 Identities=11% Similarity=0.287 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHH-------------hHHHHhhhHH-------HHHHHHHHHHHhhCCCCCCCCCCCCCCCC
Q 034185 37 LQQMQSRFQTMSDSIVT-------------KIDEMGNRIN-------ELEQSINDLRAEMGVEGSPSPLTPSKTNS 92 (102)
Q Consensus 37 LqQMQ~kFqtMS~~I~~-------------RiDeMg~RID-------dLEksI~dLm~qaG~e~~p~~s~~~~~~~ 92 (102)
+++++.+-..+|.+|-. ++.++..+|. .||..|.+++. .+.+.|.|.+|.-..+
T Consensus 49 ~e~lr~erN~~sk~I~~~k~~~~~~~~l~~~~~~Lk~ei~~le~~~~~~~~~l~~~~~--~iPNi~~~~VP~G~de 122 (448)
T PLN02678 49 LDSLRKEFNKLNKEVAKLKIAKEDATELIAETKELKKEITEKEAEVQEAKAALDAKLK--TIGNLVHDSVPVSNDE 122 (448)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCCCCCccCCCCCCc
Confidence 66777777777777742 2344444444 44555555555 4788999998865433
No 88
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=55.90 E-value=31 Score=28.48 Aligned_cols=63 Identities=11% Similarity=0.237 Sum_probs=43.2
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHhhCCC
Q 034185 17 HDSEDPKQSTADMTVFVQNLLQQM----QSRFQTMSDSIVTKIDEMGNRINELEQSINDLRAEMGVE 79 (102)
Q Consensus 17 ~~s~dpkqs~~dLT~~Vq~LLqQM----Q~kFqtMS~~I~~RiDeMg~RIDdLEksI~dLm~qaG~e 79 (102)
..+.||.....=+.++++..++.. +..-....+.+-.++++...++++.|+.+.+...+.|+.
T Consensus 128 ~~~~dP~~Aa~i~n~l~~~yi~~~~~~~~~~~~~~~~fl~~ql~~~~~~L~~ae~~l~~f~~~~~~~ 194 (498)
T TIGR03007 128 YEDKDPELAKDVVQTLLTIFVEETLGSKRQDSDSAQRFIDEQIKTYEKKLEAAENRLKAFKQENGGI 194 (498)
T ss_pred eeCCCHHHHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccc
Confidence 456677743333344444444432 233345667777899999999999999999999988864
No 89
>PF10975 DUF2802: Protein of unknown function (DUF2802); InterPro: IPR021244 This bacterial family of proteins has no known function.
Probab=55.71 E-value=12 Score=24.65 Aligned_cols=19 Identities=42% Similarity=0.740 Sum_probs=11.9
Q ss_pred HhhhHHHHHHHHHHHHHhh
Q 034185 58 MGNRINELEQSINDLRAEM 76 (102)
Q Consensus 58 Mg~RIDdLEksI~dLm~qa 76 (102)
||.||.+||+.+..|..+-
T Consensus 3 ~g~~l~~l~~~l~~l~~~~ 21 (70)
T PF10975_consen 3 MGQRLAELEQQLKQLEDQQ 21 (70)
T ss_pred HhHHHHHHHHHHHHHHHHH
Confidence 5666666666666665543
No 90
>PF03105 SPX: SPX domain; InterPro: IPR004331 The SPX domain is named after SYG1/Pho81/XPR1 proteins. This 180 residue length domain is found at the amino terminus of a variety of proteins. In the yeast protein SYG1, the N terminus directly binds to the G- protein beta subunit and inhibits transduction of the mating pheromone signal [] suggesting that all the members of this family are involved in G-protein associated signal transduction. The C-terminal of these proteins often have an EXS domain (IPR004342 from INTERPRO) []. The N-termini of several proteins involved in the regulation of phosphate transport, including the putative phosphate level sensors PHO81 from Saccharomyces cerevisiae and NUC-2 from Neurospora crassa, are also members of this family [, ]. NUC-2 contains several ankyrin repeats (IPR002110 from INTERPRO). Several members of this family are the XPR1 proteins: the xenotropic and polytropic retrovirus receptor confers susceptibility to infection with Murine leukemia virus (MLV) []. The similarity between SYG1, phosphate regulators and XPR1 sequences has been previously noted, as has the additional similarity to several predicted proteins, of unknown function, from Drosophila melanogaster, Arabidopsis thaliana, Caenorhabditis elegans, Schizosaccharomyces pombe, and Saccharomyces cerevisiae [, ]. In addition, given the similarities between XPR1 and SYG1 and phosphate regulatory proteins, it has been proposed that XPR1 might be involved in G-protein associated signal transduction [, , ] and may itself function as a phosphate sensor [].
Probab=55.55 E-value=77 Score=22.94 Aligned_cols=50 Identities=18% Similarity=0.366 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHhhC
Q 034185 28 DMTVFVQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDLRAEMG 77 (102)
Q Consensus 28 dLT~~Vq~LLqQMQ~kFqtMS~~I~~RiDeMg~RIDdLEksI~dLm~qaG 77 (102)
+....-...+..+..-++.+.+-...+..++..|++.|++.|..+..+..
T Consensus 88 ~~~~~~~~F~~~L~~El~KVn~Fy~~k~~el~~~~~~L~~ql~~l~~~~~ 137 (275)
T PF03105_consen 88 DNEESEEEFFELLDEELEKVNDFYKEKEKELRERLEELQKQLEELREQRS 137 (275)
T ss_pred hhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 33345556666677777777777888999999999999999998876544
No 91
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=55.39 E-value=38 Score=22.65 Aligned_cols=16 Identities=13% Similarity=0.362 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHHH
Q 034185 26 TADMTVFVQNLLQQMQ 41 (102)
Q Consensus 26 ~~dLT~~Vq~LLqQMQ 41 (102)
..+...+++.=+..++
T Consensus 85 ~~eA~~~l~~r~~~l~ 100 (129)
T cd00890 85 LEEAIEFLKKRLETLE 100 (129)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444443333333
No 92
>PF10393 Matrilin_ccoil: Trimeric coiled-coil oligomerisation domain of matrilin; InterPro: IPR019466 This entry represents a short domain found the matrilin (cartilage matrix) proteins. It forms a coiled coil structure and contains a single cysteine residue at its start which is likely to form a di-sulphide bridge with a corresponding cysteine in an upstream EGF domain (IPR006209 from INTERPRO), thereby spanning the VWA domain of the protein (IPR002035 from INTERPRO).This domain is likely to be responsible for protein trimerisation []. ; PDB: 1AQ5_C.
Probab=55.19 E-value=48 Score=20.69 Aligned_cols=31 Identities=19% Similarity=0.435 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhH
Q 034185 28 DMTVFVQNLLQQMQSRFQTMSDSIVTKIDEMGNRI 62 (102)
Q Consensus 28 dLT~~Vq~LLqQMQ~kFqtMS~~I~~RiDeMg~RI 62 (102)
.+-..|.+.||.+..|+..|| .||..+-.||
T Consensus 16 ~FQ~~v~~~lq~Lt~kL~~vs----~RLe~LEn~~ 46 (47)
T PF10393_consen 16 AFQNKVTSALQSLTQKLDAVS----KRLEALENRL 46 (47)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHhcc
Confidence 344556666666666665544 5565555543
No 93
>PHA03395 p10 fibrous body protein; Provisional
Probab=54.81 E-value=72 Score=22.42 Aligned_cols=57 Identities=12% Similarity=0.318 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHhhCCCCCCCCCCCCCC
Q 034185 33 VQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDLRAEMGVEGSPSPLTPSKT 90 (102)
Q Consensus 33 Vq~LLqQMQ~kFqtMS~~I~~RiDeMg~RIDdLEksI~dLm~qaG~e~~p~~s~~~~~ 90 (102)
+|+-+.+++..+..+ ++|-+++|.-+..++++...++++-.=...+-|.-|-.|.++
T Consensus 23 lQ~~V~~l~~nlpdv-~~l~~kLdaq~~~Ltti~tkv~~I~diLnpdiPdlP~~~~~~ 79 (87)
T PHA03395 23 LQAAVDDVRANLPDV-TEINEKLDAQSASLDTISSAVDNITDILNPDIPDVPDVPVKP 79 (87)
T ss_pred HHHHHHHHHhcCCcH-HHHHHHHHhHHHHHHHHHHHHHHHHHccCCCCCCCCCCCCcc
Confidence 344455566666654 367788888888888888766665554444433334333333
No 94
>PF12462 Helicase_IV_N: DNA helicase IV / RNA helicase N terminal; InterPro: IPR022161 This domain family is found in bacteria and eukaryotes, and is approximately 170 amino acids in length. The family is found in association with PF00580 from PFAM. Nucleolin unwinds nucleic acid strands in the 5' to 3' direction with respect to the bound strand. It can unwind RNA-RNA duplexes, as well as DNA-DNA and DNA-RNA duplexes. Nucleolin is modulated by phosphorylation of serine and threonine residues in its N-terminal region.
Probab=54.34 E-value=55 Score=24.17 Aligned_cols=42 Identities=19% Similarity=0.189 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhHHHHHH
Q 034185 26 TADMTVFVQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQ 67 (102)
Q Consensus 26 ~~dLT~~Vq~LLqQMQ~kFqtMS~~I~~RiDeMg~RIDdLEk 67 (102)
-+|-..|...+.+.-|.-|++|++.+...++.+-..|+.++.
T Consensus 75 w~e~~~Fa~~l~~~wq~w~~~~~~~~~~~L~~~~~~i~~~~~ 116 (166)
T PF12462_consen 75 WSEAQRFAHHLNQAWQQWSQEQSEQLAEVLPQWLQAIQRLSA 116 (166)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 357788999999999999999999999999999988888774
No 95
>PF15134 DUF4570: Domain of unknown function (DUF4570)
Probab=53.52 E-value=78 Score=23.03 Aligned_cols=44 Identities=23% Similarity=0.343 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH----------HHHHHHHhHHHHhhhHHHHHHHHH
Q 034185 27 ADMTVFVQNLLQQMQSRFQT----------MSDSIVTKIDEMGNRINELEQSIN 70 (102)
Q Consensus 27 ~dLT~~Vq~LLqQMQ~kFqt----------MS~~I~~RiDeMg~RIDdLEksI~ 70 (102)
+|+-+--.-|||||+++|.. .+.....|=...=.-|+..|+++.
T Consensus 16 eEIlsqR~~LLq~mE~~~~~q~~~kk~~~~a~~~A~kRN~~LLqDie~~eksLq 69 (109)
T PF15134_consen 16 EEILSQREMLLQQMENKFGDQNTEKKSQQQASEAAKKRNKQLLQDIEAAEKSLQ 69 (109)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 47777788899999999962 334444555555555666666653
No 96
>COG2960 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=53.51 E-value=84 Score=22.80 Aligned_cols=39 Identities=21% Similarity=0.453 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHhHHHHh---------------hhHHHHHHHHHHHHHhhC
Q 034185 39 QMQSRFQTMSDSIVTKIDEMG---------------NRINELEQSINDLRAEMG 77 (102)
Q Consensus 39 QMQ~kFqtMS~~I~~RiDeMg---------------~RIDdLEksI~dLm~qaG 77 (102)
.++.+|-.+-...+.|||=.+ .|++.||+-|..|=....
T Consensus 37 evE~~~r~~~q~~lnkLDlVsREEFdvq~qvl~rtR~kl~~Leari~~LEarl~ 90 (103)
T COG2960 37 EVEKAFRAQLQRQLNKLDLVSREEFDVQRQVLLRTREKLAALEARIEELEARLA 90 (103)
T ss_pred HHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 445555555555555555443 256666776666655543
No 97
>PF00517 GP41: Retroviral envelope protein; InterPro: IPR000328 This entry represents envelope proteins from a variety of retroviruses. It includes the GP41 subunit of the envelope protein complex from Human immunodeficiency virus (HIV) and Simian-Human immunodeficiency virus (SIV), which mediate membrane fusion during viral entry []. It has a core composed of a six-helix bundle and is folded by its trimeric N- and C-terminal heptad-repeats (NHR and CHR) []. Derivatives of this protein prevent HIV-1 from entering cell lines and primary human CD4+ cells in vitro [], making it an attractive subject of gene therapy studies against HIV and related retroviruses. The entry also represents envelop proteins from Bovine immunodeficiency virus, Feline immunodeficiency virus and Equine infectious anemia virus (EIAV) [, ], as well as the Gp36 protein from Mouse mammary tumor virus (MMTV) and Human endogenous retrovirus (HERV).; GO: 0005198 structural molecule activity, 0019031 viral envelope; PDB: 2EZO_B 2EZQ_B 2EZR_A 2JNR_B 1F23_D 2EZP_A 1JEK_A 2Q7C_A 2Q5U_A 2Q3I_A ....
Probab=53.40 E-value=65 Score=24.68 Aligned_cols=38 Identities=18% Similarity=0.205 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHH
Q 034185 37 LQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDLRA 74 (102)
Q Consensus 37 LqQMQ~kFqtMS~~I~~RiDeMg~RIDdLEksI~dLm~ 74 (102)
.++.|..++..-..|-..|.-++.|+..||+-+.|-.-
T Consensus 30 ~e~~~~lL~l~v~gik~~V~~L~aRV~alE~~l~dq~l 67 (204)
T PF00517_consen 30 QEAQQHLLQLTVWGIKQGVKQLQARVLALERYLKDQQL 67 (204)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhhhhhhhhhhhhhhHHHHHHHhhhHHH
Confidence 45556777766667777888899999999998887554
No 98
>TIGR02976 phageshock_pspB phage shock protein B. This model describes the PspB protein of the psp (phage shock protein) operon, as found in Escherichia coli and many related species. Expression of a phage protein called secretin protein IV, and a number of other stresses including ethanol, heat shock, and defects in protein secretion trigger sigma-54-dependent expression of the phage shock regulon. PspB is both a regulator and an effector protein of the phage shock response.
Probab=53.20 E-value=21 Score=24.08 Aligned_cols=21 Identities=29% Similarity=0.572 Sum_probs=15.5
Q ss_pred HHHHhHHHHhhhHHHHHHHHH
Q 034185 50 SIVTKIDEMGNRINELEQSIN 70 (102)
Q Consensus 50 ~I~~RiDeMg~RIDdLEksI~ 70 (102)
++..+.+-|-.||+-||+=+.
T Consensus 46 ~L~~~a~rm~eRI~tLE~ILd 66 (75)
T TIGR02976 46 ELYAKADRLEERIDTLERILD 66 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHc
Confidence 344667788889999998553
No 99
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=52.76 E-value=33 Score=26.53 Aligned_cols=13 Identities=31% Similarity=0.598 Sum_probs=5.2
Q ss_pred hHHHHhhhHHHHH
Q 034185 54 KIDEMGNRINELE 66 (102)
Q Consensus 54 RiDeMg~RIDdLE 66 (102)
.|+++..+|+.||
T Consensus 128 eI~~L~~~i~~le 140 (171)
T PF04799_consen 128 EIKQLEKEIQRLE 140 (171)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3344444444433
No 100
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=52.43 E-value=70 Score=21.56 Aligned_cols=20 Identities=20% Similarity=0.503 Sum_probs=13.6
Q ss_pred HHHhhhHHHHHHHHHHHHHh
Q 034185 56 DEMGNRINELEQSINDLRAE 75 (102)
Q Consensus 56 DeMg~RIDdLEksI~dLm~q 75 (102)
-+.-.++|+|++=|.+-...
T Consensus 30 r~v~~kLneLd~Li~eA~~r 49 (109)
T PF03980_consen 30 RDVVEKLNELDKLIEEAKER 49 (109)
T ss_pred hhHHHHHHHHHHHHHHHHHh
Confidence 45677788888777665443
No 101
>COG4575 ElaB Uncharacterized conserved protein [Function unknown]
Probab=52.29 E-value=59 Score=23.50 Aligned_cols=44 Identities=9% Similarity=0.280 Sum_probs=35.1
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhHHHH
Q 034185 22 PKQSTADMTVFVQNLLQQMQSRFQTMSDSIVTKIDEMGNRINEL 65 (102)
Q Consensus 22 pkqs~~dLT~~Vq~LLqQMQ~kFqtMS~~I~~RiDeMg~RIDdL 65 (102)
+++..++|-+=.+.+|.+.++||+..++.+..|.-++-.+=|+.
T Consensus 35 a~~e~~~lR~r~~~~Lk~~r~rl~~~~d~v~~~sk~a~~~tD~y 78 (104)
T COG4575 35 AGDEAEELRSKAESALKEARDRLGDTGDAVVQRSKAAADATDDY 78 (104)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 34456788888888899999999988888888888887776664
No 102
>PRK09706 transcriptional repressor DicA; Reviewed
Probab=52.21 E-value=30 Score=24.01 Aligned_cols=40 Identities=15% Similarity=0.291 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHhH-HHHhhhHHHHHHHHHHHHHhhC
Q 034185 38 QQMQSRFQTMSDSIVTKI-DEMGNRINELEQSINDLRAEMG 77 (102)
Q Consensus 38 qQMQ~kFqtMS~~I~~Ri-DeMg~RIDdLEksI~dLm~qaG 77 (102)
..|...|..+++.--.++ +.|..+++.+|+-+++++..-+
T Consensus 90 ~~ll~~~~~L~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~ 130 (135)
T PRK09706 90 KELLELFDALPESEQDAQLSEMRARVENFNKLFEELLKARK 130 (135)
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445566777777655554 8888999999999999998765
No 103
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=51.97 E-value=74 Score=21.71 Aligned_cols=22 Identities=18% Similarity=0.410 Sum_probs=11.6
Q ss_pred HhHHHHhhhHHHHHHHHHHHHH
Q 034185 53 TKIDEMGNRINELEQSINDLRA 74 (102)
Q Consensus 53 ~RiDeMg~RIDdLEksI~dLm~ 74 (102)
.+++..-+.|.+++++|.++++
T Consensus 88 k~~~~l~~~l~e~q~~l~~~~~ 109 (110)
T TIGR02338 88 RQEERLREQLKELQEKIQEALA 109 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 4445555555555555555543
No 104
>PF03310 Cauli_DNA-bind: Caulimovirus DNA-binding protein; InterPro: IPR004986 The gene III product (P15) of cauliflower mosaic virus (CaMV) is a DNA binding protein in which the DNA binding activity is located on its C-terminal part. A family of related proteins is expressed by other members of the Caulimoviridae.; GO: 0003677 DNA binding; PDB: 3F6N_A 3K4T_D.
Probab=51.01 E-value=48 Score=24.53 Aligned_cols=32 Identities=22% Similarity=0.342 Sum_probs=21.7
Q ss_pred HHHHHHHHHHhH-HHHhhhHHHHH--HHHHHHHHh
Q 034185 44 FQTMSDSIVTKI-DEMGNRINELE--QSINDLRAE 75 (102)
Q Consensus 44 FqtMS~~I~~Ri-DeMg~RIDdLE--ksI~dLm~q 75 (102)
|++--+.|-+|| -||+.+||+-| +.|-|.+..
T Consensus 35 ~~e~lEsiAAKIIkDisdkIdkCeC~Kelle~Lk~ 69 (121)
T PF03310_consen 35 DQENLESIAAKIIKDISDKIDKCECNKELLEALKK 69 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT-TTHHHHHHHHT-
T ss_pred hHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHhc
Confidence 344555666776 77999999997 777776654
No 105
>PF05565 Sipho_Gp157: Siphovirus Gp157; InterPro: IPR008840 This family contains both viral and bacterial proteins which are related to the Gp157 protein of the Streptococcus thermophilus SFi bacteriophage. It is thought that bacteria possessing the gene coding for this protein have an increased resistance to the bacteriophage [].
Probab=50.85 E-value=97 Score=22.72 Aligned_cols=26 Identities=23% Similarity=0.390 Sum_probs=20.3
Q ss_pred HHhhhHHHHHHHHHHHHHhhCCCCCC
Q 034185 57 EMGNRINELEQSINDLRAEMGVEGSP 82 (102)
Q Consensus 57 eMg~RIDdLEksI~dLm~qaG~e~~p 82 (102)
-.-+|++.|...+.+.|..+|.....
T Consensus 72 ~~e~~~~~Lk~yL~~~m~~~g~~ki~ 97 (162)
T PF05565_consen 72 SIENRIDRLKEYLLDAMEAAGIKKIK 97 (162)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCceee
Confidence 34677888888899999999987543
No 106
>COG1322 Predicted nuclease of restriction endonuclease-like fold, RmuC family [General function prediction only]
Probab=50.70 E-value=38 Score=29.44 Aligned_cols=46 Identities=2% Similarity=0.263 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhHH-HHHHHHHH
Q 034185 26 TADMTVFVQNLLQQMQSRFQTMSDSIVTKIDEMGNRIN-ELEQSIND 71 (102)
Q Consensus 26 ~~dLT~~Vq~LLqQMQ~kFqtMS~~I~~RiDeMg~RID-dLEksI~d 71 (102)
..++........+....+|..++.+.+.||+.|-.+++ .+++.+.+
T Consensus 104 ~~~~~~~~~~i~e~~~~~~~el~~~~~~~Ll~~~~~~~e~f~e~l~~ 150 (448)
T COG1322 104 SSEFQELANEIFEELNRRLAELNQQNLKQLLKPLREVLEKFREQLEQ 150 (448)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566666666677888899999999999866544 45555554
No 107
>PRK03100 sec-independent translocase; Provisional
Probab=50.58 E-value=75 Score=23.65 Aligned_cols=46 Identities=9% Similarity=0.273 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH-HHhhhHHHHHHHHHHH
Q 034185 26 TADMTVFVQNLLQQMQSRFQTMSDSIVTKID-EMGNRINELEQSINDL 72 (102)
Q Consensus 26 ~~dLT~~Vq~LLqQMQ~kFqtMS~~I~~RiD-eMg~RIDdLEksI~dL 72 (102)
+..|-.++..+ -+.-.+|..+...+-..++ ||+..+|||.+.+.+|
T Consensus 23 PkrLP~~~r~l-G~~vr~~R~~~~~~~~~~~~elg~e~~dlrk~l~el 69 (136)
T PRK03100 23 PERLPGAIRWT-ARALRQARDYASGATSQLREELGPEFDDLRKPLGEL 69 (136)
T ss_pred chHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 34555555543 3344557777777777774 7888899998866554
No 108
>PRK11519 tyrosine kinase; Provisional
Probab=50.46 E-value=84 Score=27.97 Aligned_cols=64 Identities=17% Similarity=0.248 Sum_probs=46.2
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHH-HHHH---HHHHHHHHHhHHHHhhhHHHHHHHHHHHHHhhCCCC
Q 034185 17 HDSEDPKQSTADMTVFVQNLLQQM-QSRF---QTMSDSIVTKIDEMGNRINELEQSINDLRAEMGVEG 80 (102)
Q Consensus 17 ~~s~dpkqs~~dLT~~Vq~LLqQM-Q~kF---qtMS~~I~~RiDeMg~RIDdLEksI~dLm~qaG~e~ 80 (102)
..+.||.....=+.++++..+++. ..|+ +...+.|-.|+.+...++++.|+.+.+...+.|+-.
T Consensus 234 ~~~~dP~~Aa~iaN~l~~~Yi~~~~~~k~~~a~~a~~fL~~ql~~l~~~L~~aE~~l~~fr~~~~~vd 301 (719)
T PRK11519 234 YTGEDREQIRDILNSITRNYLEQNIERKSEEASKSLAFLAQQLPEVRSRLDVAENKLNAFRQDKDSVD 301 (719)
T ss_pred EEcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 345677744445556666555443 3343 356677889999999999999999999999988743
No 109
>PF08776 VASP_tetra: VASP tetramerisation domain; InterPro: IPR014885 Vasodilator-stimulated phosphoprotein (VASP) is an actin cytoskeletal regulatory protein. This region corresponds to the tetramerisation domain which forms a right handed alpha helical coiled coil structure []. ; PDB: 1USE_A 1USD_A.
Probab=50.11 E-value=59 Score=20.02 Aligned_cols=30 Identities=20% Similarity=0.509 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 034185 26 TADMTVFVQNLLQQMQSRFQTMSDSIVTKI 55 (102)
Q Consensus 26 ~~dLT~~Vq~LLqQMQ~kFqtMS~~I~~Ri 55 (102)
..||-.+=|.+|+.|-.-++.|=+.|+.-|
T Consensus 2 ~~dle~~KqEIL~EvrkEl~K~K~EIIeA~ 31 (40)
T PF08776_consen 2 SSDLERLKQEILEEVRKELQKVKEEIIEAI 31 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468899999999999999999999998776
No 110
>PF05537 DUF759: Borrelia burgdorferi protein of unknown function (DUF759); InterPro: IPR008478 This entry consists of several uncharacterised proteins from Borrelia species including Borrelia burgdorferi and Borrelia garinii.
Probab=48.82 E-value=51 Score=29.05 Aligned_cols=30 Identities=17% Similarity=0.372 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHhhCCCCCCCCCCCCCCCC
Q 034185 62 INELEQSINDLRAEMGVEGSPSPLTPSKTNS 92 (102)
Q Consensus 62 IDdLEksI~dLm~qaG~e~~p~~s~~~~~~~ 92 (102)
.+.|=..+...|-..|-++ |++-+|+++++
T Consensus 398 F~kLk~~lp~wm~~~~~~~-~~~~~~~~~~~ 427 (431)
T PF05537_consen 398 FDKLKSMLPKWMGGTGNDN-PKPQEEPKNQD 427 (431)
T ss_pred HHHHHHHhHHhhCCCCcCC-CCCCCCCCCCC
Confidence 6789999999999999887 44554555544
No 111
>PF11855 DUF3375: Protein of unknown function (DUF3375); InterPro: IPR021804 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 479 to 499 amino acids in length.
Probab=48.17 E-value=63 Score=27.64 Aligned_cols=70 Identities=23% Similarity=0.431 Sum_probs=39.1
Q ss_pred hchhhhH---HhhcCCCCCCCCCCHHHHHHHHHHHHHHH-----------HHHHHHHHHHH-----------HHhHHHHh
Q 034185 5 ICSNWLL---FWQDGHDSEDPKQSTADMTVFVQNLLQQM-----------QSRFQTMSDSI-----------VTKIDEMG 59 (102)
Q Consensus 5 ~~~~~~~---~~~~~~~s~dpkqs~~dLT~~Vq~LLqQM-----------Q~kFqtMS~~I-----------~~RiDeMg 59 (102)
+|.+|.- =|+-...........=+||...+..|.-+ .+||.++.+.| -.||.+.-
T Consensus 71 yl~~W~~~~~GwL~r~~~~~~~e~~y~lT~~a~~Al~~l~~L~~~~~~~TeSRl~tv~~~l~~la~~~~~Dp~~Ri~~Le 150 (478)
T PF11855_consen 71 YLRDWVRADKGWLRRRYDEGSDEEHYELTPAAEKALRFLERLEERRFVGTESRLNTVFDALRQLAEGTDPDPERRIAELE 150 (478)
T ss_pred HHHHHHHHhhhHHHhccCCCCCCeeEEeCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 4666766 45543222221123445665555554443 23444444433 36788888
Q ss_pred hhHHHHHHHHHHHHH
Q 034185 60 NRINELEQSINDLRA 74 (102)
Q Consensus 60 ~RIDdLEksI~dLm~ 74 (102)
+||++|++.|..|-.
T Consensus 151 ~e~~~i~~EI~~l~a 165 (478)
T PF11855_consen 151 REIAEIDAEIDRLEA 165 (478)
T ss_pred HHHHHHHHHHHHHHC
Confidence 888888888888754
No 112
>PF02524 KID: KID repeat; InterPro: IPR003900 This group of proteins contains the KID repeat as found in Borrelia and spirochete Repeat motif-containing proteins including RepA/Rep+, RepU and various Bdr proteins. RepA and related Borrelia proteins have been suggested to play an important genus-wide role in the biology of the Borrelia []. Bdr proteins are polymorphic inner membrane proteins produced by most Borrelia species []. The bdr genes of encode proteins that form three distinct subfamilies: BdrD, BdrE, and BdrF. bdr orthologues have been appear to be present in all Borrelia species that have been analysed []. It is thought that BdrF2 and the other proteins encoded by the operon form an inner-membrane-associated protein complex that may interact with DNA and which may act during transmission or in the early stages of infection [].
Probab=48.04 E-value=5.8 Score=18.59 Aligned_cols=10 Identities=30% Similarity=0.783 Sum_probs=7.7
Q ss_pred hHHHHHHHHH
Q 034185 61 RINELEQSIN 70 (102)
Q Consensus 61 RIDdLEksI~ 70 (102)
+||..|||++
T Consensus 1 KID~VEknL~ 10 (11)
T PF02524_consen 1 KIDSVEKNLN 10 (11)
T ss_pred CcchHhhhcc
Confidence 5888888874
No 113
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=47.91 E-value=1.1e+02 Score=26.23 Aligned_cols=38 Identities=24% Similarity=0.456 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHH
Q 034185 37 LQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDLRA 74 (102)
Q Consensus 37 LqQMQ~kFqtMS~~I~~RiDeMg~RIDdLEksI~dLm~ 74 (102)
++.|++.|++--..+...+.|=-.|..-||..|+|++.
T Consensus 235 ~e~Lk~~~~~e~~~~~~~LqEEr~R~erLEeqlNd~~e 272 (395)
T PF10267_consen 235 IEKLKEQYQREYQFILEALQEERYRYERLEEQLNDLTE 272 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 45556666666667778888999999999999999986
No 114
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=47.77 E-value=84 Score=21.14 Aligned_cols=20 Identities=15% Similarity=0.476 Sum_probs=9.9
Q ss_pred HhHHHHhhhHHHHHHHHHHH
Q 034185 53 TKIDEMGNRINELEQSINDL 72 (102)
Q Consensus 53 ~RiDeMg~RIDdLEksI~dL 72 (102)
.++++....+.+|+++|.++
T Consensus 84 ~~~~~l~~~~~elk~~l~~~ 103 (105)
T cd00632 84 RQEEDLQEKLKELQEKIQQA 103 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555443
No 115
>PF02865 STAT_int: STAT protein, protein interaction domain; InterPro: IPR013799 The STAT protein (Signal Transducers and Activators of Transcription) family contains transcription factors that are specifically activated to regulate gene transcription when cells encounter cytokines and growth factors, hence they act as signal transducers in the cytoplasm and transcription activators in the nucleus []. Binding of these factors to cell-surface receptors leads to receptor autophosphorylation at a tyrosine, the phosphotyrosine being recognised by the STAT SH2 domain, which mediates the recruitment of STAT proteins from the cytosol and their association with the activated receptor. The STAT proteins are then activated by phosphorylation via members of the JAK family of protein kinases, causing them to dimerise and translocated to the nucleus, where they bind to specific promoter sequences in target genes. In mammals, STATs comprise a family of seven structurally and functionally related proteins: Stat1, Stat2, Stat3, Stat4, Stat5a and Stat5b, Stat6. STAT proteins play a critical role in regulating innate and acquired host immune responses. Dysregulation of at least two STAT signalling cascades (i.e. Stat3 and Stat5) is associated with cellular transformation. Signalling through the JAK/STAT pathway is initiated when a cytokine binds to its corresponding receptor. This leads to conformational changes in the cytoplasmic portion of the receptor, initiating activation of receptor associated members of the JAK family of kinases. The JAKs, in turn, mediate phosphorylation at the specific receptor tyrosine residues, which then serve as docking sites for STATs and other signalling molecules. Once recruited to the receptor, STATs also become phosphorylated by JAKs, on a single tyrosine residue. Activated STATs dissociate from the receptor, dimerise, translocate to the nucleus and bind to members of the GAS (gamma activated site) family of enhancers. The seven STAT proteins identified in mammals range in size from 750 and 850 amino acids. The chromosomal distribution of these STATs, as well as the identification of STATs in more primitive eukaryotes, suggest that this family arose from a single primordial gene. STATs share structurally and functionally conserved domains including: an N-terminal domain that strengthens interactions between STAT dimers on adjacent DNA-binding sites; a coiled-coil STAT domain that is implicated in protein-protein interactions; a DNA-binding domain with an immunoglobulin-like fold similar to p53 tumour suppressor protein; an EF-hand-like linker domain connecting the DNA-binding and SH2 domains; an SH2 domain (IPR000980 from INTERPRO) that acts as a phosphorylation-dependent switch to control receptor recognition and DNA-binding; and a C-terminal transactivation domain []. The crystal structure of the N terminus of Stat4 reveals a dimer. The interface of this dimer is formed by a ring-shaped element consisting of five short helices. Several studies suggest that this N-terminal dimerisation promotes cooperativity of binding to tandem GAS elements and with the transcriptional coactivator CBP/p300. This entry represents the N-terminal domain, which is responsible for protein interactions. This domain has a multi-helical structure that can be subdivided into two structural sub-domains.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0004871 signal transducer activity, 0006355 regulation of transcription, DNA-dependent, 0007165 signal transduction; PDB: 1BGF_A 1YVL_A.
Probab=47.67 E-value=45 Score=23.94 Aligned_cols=31 Identities=29% Similarity=0.432 Sum_probs=23.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhH
Q 034185 25 STADMTVFVQNLLQQMQSRFQTMS--DSIVTKI 55 (102)
Q Consensus 25 s~~dLT~~Vq~LLqQMQ~kFqtMS--~~I~~Ri 55 (102)
.....+.++++||++||.+-...+ +.++.|+
T Consensus 52 ~~~~A~~l~~~ll~~Lq~~~~~~~~~~~fl~~~ 84 (124)
T PF02865_consen 52 DESQASVLFQNLLQELQQQASRQSQEDNFLLQH 84 (124)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHT-HHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhcCcchhHHHH
Confidence 677889999999999999987765 4666665
No 116
>PF13864 Enkurin: Calmodulin-binding
Probab=47.56 E-value=85 Score=21.10 Aligned_cols=46 Identities=15% Similarity=0.379 Sum_probs=27.5
Q ss_pred HHHHHHHHHH---HHHHHHHHHHHH-----HHHHHhHHHHhhhHHHHHHHHHHH
Q 034185 27 ADMTVFVQNL---LQQMQSRFQTMS-----DSIVTKIDEMGNRINELEQSINDL 72 (102)
Q Consensus 27 ~dLT~~Vq~L---LqQMQ~kFqtMS-----~~I~~RiDeMg~RIDdLEksI~dL 72 (102)
+|-...+++| .+++...|+.|+ -.+..|=.+|-.+|++||+.|.-|
T Consensus 40 eER~~lL~~Lk~~~~el~~ey~~lp~~~DT~~~~~rK~~lE~~L~qlE~dI~~l 93 (98)
T PF13864_consen 40 EERQELLEGLKKNWDELNKEYQKLPFSIDTLRKKRRKEELEKELKQLEKDIKKL 93 (98)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCcccCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444 445555666544 223345578888999999988644
No 117
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=47.09 E-value=55 Score=22.36 Aligned_cols=28 Identities=18% Similarity=0.325 Sum_probs=16.8
Q ss_pred HHHHHHhHHHHhhhHHHHHHHHHHHHHh
Q 034185 48 SDSIVTKIDEMGNRINELEQSINDLRAE 75 (102)
Q Consensus 48 S~~I~~RiDeMg~RIDdLEksI~dLm~q 75 (102)
-..+-.|++.+-.+|+.||+.+..|-.+
T Consensus 69 ~~~l~~r~e~ie~~i~~lek~~~~l~~~ 96 (110)
T TIGR02338 69 IQELKEKKETLELRVKTLQRQEERLREQ 96 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444566666666666666666665443
No 118
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=47.02 E-value=99 Score=26.08 Aligned_cols=20 Identities=15% Similarity=0.152 Sum_probs=10.7
Q ss_pred HhHHHHhhhHHHHHHHHHHH
Q 034185 53 TKIDEMGNRINELEQSINDL 72 (102)
Q Consensus 53 ~RiDeMg~RIDdLEksI~dL 72 (102)
.+++..-.|+|.|++.+...
T Consensus 300 ~~L~~~~qrLd~L~~RL~~a 319 (432)
T TIGR00237 300 NKLALQQLQFEKLEKRKQAA 319 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34555555666665555443
No 119
>PLN02320 seryl-tRNA synthetase
Probab=47.02 E-value=1.5e+02 Score=26.20 Aligned_cols=57 Identities=11% Similarity=0.233 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHHH------------hHHHHhhhHHHHHHHHHHHHHh-----hCCCCCCCCCCCCCCC
Q 034185 35 NLLQQMQSRFQTMSDSIVT------------KIDEMGNRINELEQSINDLRAE-----MGVEGSPSPLTPSKTN 91 (102)
Q Consensus 35 ~LLqQMQ~kFqtMS~~I~~------------RiDeMg~RIDdLEksI~dLm~q-----aG~e~~p~~s~~~~~~ 91 (102)
.-+++++.+...+|.+|-. ++.++..+|.+||+.+..+-.+ ..+.+.|.+++|.-+.
T Consensus 107 ~~~~~lr~ern~~sk~i~~~~~~~~~~~l~~~~k~lk~~i~~le~~~~~~~~~l~~~~l~iPN~~h~~VP~G~d 180 (502)
T PLN02320 107 KEVERLRAERNAVANKMKGKLEPSERQALVEEGKNLKEGLVTLEEDLVKLTDELQLEAQSIPNMTHPDVPVGGE 180 (502)
T ss_pred HHHHHHHHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccCCCCCC
Confidence 3467777777787777643 4566677777777776555332 2488888888876543
No 120
>COG0783 Dps DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]
Probab=46.82 E-value=37 Score=25.50 Aligned_cols=47 Identities=13% Similarity=0.403 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHhhhHHHHH----HHHHHHHHhhCCCCCCC
Q 034185 37 LQQMQSRFQTMSDSIVTKIDEMGNRINELE----QSINDLRAEMGVEGSPS 83 (102)
Q Consensus 37 LqQMQ~kFqtMS~~I~~RiDeMg~RIDdLE----ksI~dLm~qaG~e~~p~ 83 (102)
+-++..+|+..=+++...+||++.||-.|= .+..+++.-+-+++.+.
T Consensus 46 F~~lHe~~ee~y~el~~~~DeiAERi~~LGg~p~~t~~~~~~~s~ike~~~ 96 (156)
T COG0783 46 FFALHEKLEELYEELAEHVDEIAERIRALGGVPLGTLSEYLKLSSIKEEPG 96 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcccHHHHHHhCCCcccCC
Confidence 445678899999999999999999998773 35566666655555443
No 121
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=46.77 E-value=84 Score=20.84 Aligned_cols=49 Identities=16% Similarity=0.396 Sum_probs=30.9
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHh
Q 034185 22 PKQSTADMTVFVQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDLRAE 75 (102)
Q Consensus 22 pkqs~~dLT~~Vq~LLqQMQ~kFqtMS~~I~~RiDeMg~RIDdLEksI~dLm~q 75 (102)
+..++.|+.+.+.. +..||+.+ .+.+..+.+|++=+.+-|..|..|-.+
T Consensus 19 ~~~~~kd~~~~~~~----lk~Klq~a-r~~i~~lpgi~~s~eeq~~~i~~Le~~ 67 (83)
T PF07544_consen 19 PPLSSKDLDTATGS----LKHKLQKA-RAAIRELPGIDRSVEEQEEEIEELEEQ 67 (83)
T ss_pred CCCCHHHHHHHHHH----HHHHHHHH-HHHHHhCCCccCCHHHHHHHHHHHHHH
Confidence 55578887766665 67777774 444556666666666666666655443
No 122
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=46.76 E-value=1.1e+02 Score=26.97 Aligned_cols=64 Identities=19% Similarity=0.264 Sum_probs=47.2
Q ss_pred CCCCCCCCCHHHHHHHHHHHHH-HHHHHHH---HHHHHHHHhHHHHhhhHHHHHHHHHHHHHhhCCCC
Q 034185 17 HDSEDPKQSTADMTVFVQNLLQ-QMQSRFQ---TMSDSIVTKIDEMGNRINELEQSINDLRAEMGVEG 80 (102)
Q Consensus 17 ~~s~dpkqs~~dLT~~Vq~LLq-QMQ~kFq---tMS~~I~~RiDeMg~RIDdLEksI~dLm~qaG~e~ 80 (102)
..+.||.....=+.++++..++ ++..|++ ...+.+-.||++...++.+.|+.+.+...+.|+-.
T Consensus 161 ~~~~dP~~Aa~iaN~la~~Y~~~~~~~k~~~~~~a~~~L~~ql~~l~~~l~~aE~~l~~fk~~~~l~~ 228 (754)
T TIGR01005 161 FRSEDPKLAAAIPDAIAAAYIAGQGAAKSESNTAAADFLAPEIADLSKQSRDAEAEVAAYRAQSDLLM 228 (754)
T ss_pred EecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcc
Confidence 4567777444444555555553 3455554 45788889999999999999999999999988754
No 123
>PF06342 DUF1057: Alpha/beta hydrolase of unknown function (DUF1057); InterPro: IPR010463 This entry consists of proteins of unknown function which have an alpha/beta hydrolase fold.
Probab=46.74 E-value=14 Score=30.83 Aligned_cols=37 Identities=19% Similarity=0.215 Sum_probs=30.8
Q ss_pred hhchhhhHHhhcCCCCCCCCCCHHHHHHHHHHHHHHHH
Q 034185 4 LICSNWLLFWQDGHDSEDPKQSTADMTVFVQNLLQQMQ 41 (102)
Q Consensus 4 ~~~~~~~~~~~~~~~s~dpkqs~~dLT~~Vq~LLqQMQ 41 (102)
+||.||=-|..........- +..|...||++||++|.
T Consensus 65 ~I~iN~PGf~~t~~~~~~~~-~n~er~~~~~~ll~~l~ 101 (297)
T PF06342_consen 65 FIGINYPGFGFTPGYPDQQY-TNEERQNFVNALLDELG 101 (297)
T ss_pred EEEeCCCCCCCCCCCccccc-ChHHHHHHHHHHHHHcC
Confidence 58999999988866555555 88999999999999874
No 124
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=46.70 E-value=80 Score=20.53 Aligned_cols=41 Identities=27% Similarity=0.466 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHhh
Q 034185 35 NLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDLRAEM 76 (102)
Q Consensus 35 ~LLqQMQ~kFqtMS~~I~~RiDeMg~RIDdLEksI~dLm~qa 76 (102)
.+-.+| .|+..-.-..-.|+.|.-.|..+|+..|..|-.+.
T Consensus 15 ~~~eEL-~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ 55 (61)
T PF08826_consen 15 AIQEEL-TKVKSANLAFESKLQEAEKRNRELEQEIERLKKEM 55 (61)
T ss_dssp HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444 35666666667888888888888888888886653
No 125
>PF05791 Bacillus_HBL: Bacillus haemolytic enterotoxin (HBL); InterPro: IPR008414 This family consists of several Bacillus haemolytic enterotoxins (HblC, HblD, HblA, NheA, and NheB), which can cause food poisoning in humans []. Haemolysin BL (encoded by HBL) and non-haemolytic enterotoxin (encoded by NHE), represent the major enterotoxins produced by Bacillus cereus. Most of the cytotoxic activity of B. cereus isolates has been attributed to the level of Nhe, which may indicate a highly diarrheic potential []. The exact mechanism by which B. cereus causes diarrhoea is unknown. Hbl, cytotoxin K (CytK) and Nhe are all putative causes. Both Hbl and Nhe are three-component cytotoxins and maximal cytotoxicity of Nhe against epithelia is dependent on all three components. Nhe has haemolytic activity against erythrocytes from a variety of species. It is possible that the common structural and functional properties of these toxins indicate that the Hbl/Nhe and ClyA families of toxins constitute a superfamily of pore-forming cytotoxins []. The high virulence of some strains is thought to be due to the greater cytotoxic activity of CytK-1 compared to CytK-2, and to a high level of cytK expression []. Haemolysin BL and non-haemolytic enterotoxin production are both influenced by pH and micro []. This entry is found in cytotoxic proteins that form part of the enterotoxin complex and bind to erythrocytes. HblA is composed of a binding component, B, and two lytic components, L1 and L2. All three subunits act synergically to cause hemolysis.; GO: 0009405 pathogenesis, 0016020 membrane; PDB: 2NRJ_A.
Probab=46.13 E-value=1.1e+02 Score=22.77 Aligned_cols=34 Identities=21% Similarity=0.346 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHh
Q 034185 42 SRFQTMSDSIVTKIDEMGNRINELEQSINDLRAE 75 (102)
Q Consensus 42 ~kFqtMS~~I~~RiDeMg~RIDdLEksI~dLm~q 75 (102)
..|.+-...+...+..-+..|++|++.|.++-.+
T Consensus 145 ~~l~~~~~~l~~~l~~~~g~I~~L~~~I~~~~~~ 178 (184)
T PF05791_consen 145 RNLKTDVDELQSILAGENGDIPQLQKQIENLNEE 178 (184)
T ss_dssp HHHHHHHHHHHHHHHHTT--HHHHHHHHHHHTGG
T ss_pred HHHHHhHHHHHHHHhcccCCHHHHHHHHHHHHHH
Confidence 3477777777778877788888888888877554
No 126
>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []. The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].
Probab=46.05 E-value=1.3e+02 Score=23.96 Aligned_cols=47 Identities=21% Similarity=0.377 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----HhHHHHhhhHHHHHHHHHHHHHh
Q 034185 29 MTVFVQNLLQQMQSRFQTMSDSIV-----TKIDEMGNRINELEQSINDLRAE 75 (102)
Q Consensus 29 LT~~Vq~LLqQMQ~kFqtMS~~I~-----~RiDeMg~RIDdLEksI~dLm~q 75 (102)
++.-...+++.+|.++-+.|..+- +.|+.+-..|..+|..+.+....
T Consensus 3 ~~~~~~~~~d~lq~~i~~as~~lNd~TGYs~Ie~LK~~i~~~E~~l~~~r~~ 54 (207)
T PF05546_consen 3 LSKKLSFYMDSLQETIFTASQALNDVTGYSEIEKLKKSIEELEDELEAARQE 54 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455567788888999888887764 67888888899999888776543
No 127
>PF12896 Apc4: Anaphase-promoting complex, cyclosome, subunit 4; InterPro: IPR024790 Apc4 is one of the larger of the subunits of the anaphase-promoting complex (APC) or cyclosome. The anaphase-promoting complex is a multiprotein subunit E3 ubiquitin ligase complex that controls segregation of chromosomes and exit from mitosis in eukaryotes [, ]. Results in Caenorhabditis elegans show that the primary essential role of the spindle assembly checkpoint is not in the chromosome segregation process itself but rather in delaying anaphase onset until all chromosomes are properly attached to the spindle. The APC is likely to be required for all metaphase-to-anaphase transitions in a multicellular organism []. This entry represents the long domain downstream of the WD40 repeat/s that are present on the Apc4 subunits.
Probab=46.04 E-value=1.2e+02 Score=22.23 Aligned_cols=44 Identities=11% Similarity=0.347 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHH
Q 034185 29 MTVFVQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDL 72 (102)
Q Consensus 29 LT~~Vq~LLqQMQ~kFqtMS~~I~~RiDeMg~RIDdLEksI~dL 72 (102)
....+++|+.-+..-++.|....-.-..+|.++++++++.+.+-
T Consensus 25 ~~~~i~~ll~yi~~~l~~i~~~w~~~~~~~~~~l~~~~~~l~~~ 68 (210)
T PF12896_consen 25 KSSQIQSLLRYIKDTLDAIQEEWEEALQEFDRKLTNLADELQEK 68 (210)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34567788888888888888888888899999999998765543
No 128
>PRK06665 flgK flagellar hook-associated protein FlgK; Validated
Probab=45.81 E-value=1.3e+02 Score=26.72 Aligned_cols=41 Identities=17% Similarity=0.282 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHhhC
Q 034185 37 LQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDLRAEMG 77 (102)
Q Consensus 37 LqQMQ~kFqtMS~~I~~RiDeMg~RIDdLEksI~dLm~qaG 77 (102)
++++...++.+-.++-.+|+..-.+|+.|=++|++|-.|..
T Consensus 155 ~n~~~~~L~~~~~~~~~~i~~~V~~iN~ll~qIa~LN~qI~ 195 (627)
T PRK06665 155 IHDRYRSLERIRDMANDEIEITVEEINNILRNIADLNEQIV 195 (627)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666777777788888888888888888888888887754
No 129
>PF05531 NPV_P10: Nucleopolyhedrovirus P10 protein; InterPro: IPR008702 This family consists of several nucleopolyhedrovirus P10 proteins which are thought to be involved in the morphogenesis of the polyhedra [].; GO: 0019028 viral capsid
Probab=45.81 E-value=75 Score=21.64 Aligned_cols=36 Identities=8% Similarity=0.404 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHh
Q 034185 39 QMQSRFQTMSDSIVTKIDEMGNRINELEQSINDLRAE 75 (102)
Q Consensus 39 QMQ~kFqtMS~~I~~RiDeMg~RIDdLEksI~dLm~q 75 (102)
.+|.+-..+...+ .++.++..|||.+.+.+.+|-++
T Consensus 22 aLq~~V~~l~~~~-~~v~~l~~klDa~~~~l~~l~~~ 57 (75)
T PF05531_consen 22 ALQTQVDDLESNL-PDVTELNKKLDAQSAQLTTLNTK 57 (75)
T ss_pred HHHHHHHHHHhcC-CchHHHHHHHHHHHHHHHHHHHH
Confidence 3444444443333 45667888888888888887664
No 130
>COG4062 MtrB Tetrahydromethanopterin S-methyltransferase, subunit B [Coenzyme metabolism]
Probab=45.59 E-value=34 Score=25.01 Aligned_cols=33 Identities=24% Similarity=0.483 Sum_probs=25.1
Q ss_pred HHHHhHHHHhhhHHHHHHHHHHHHHhhCCCCCC
Q 034185 50 SIVTKIDEMGNRINELEQSINDLRAEMGVEGSP 82 (102)
Q Consensus 50 ~I~~RiDeMg~RIDdLEksI~dLm~qaG~e~~p 82 (102)
-|+--+|..-.||++||.-++|+++......+|
T Consensus 28 vi~ldv~pi~Eqi~kLe~~vddl~~sldPstp~ 60 (108)
T COG4062 28 VIFLDVDPIEEQIKKLETLVDDLENSLDPSTPP 60 (108)
T ss_pred eEEEeccHHHHHHHHHHHHHHHHHhccCCCCCC
Confidence 345557888899999999999999976543333
No 131
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=45.17 E-value=1e+02 Score=22.44 Aligned_cols=22 Identities=27% Similarity=0.480 Sum_probs=14.4
Q ss_pred HHHHhHHHHhhhHHHHHHHHHH
Q 034185 50 SIVTKIDEMGNRINELEQSIND 71 (102)
Q Consensus 50 ~I~~RiDeMg~RIDdLEksI~d 71 (102)
....|++|.-.+|+++.+++.+
T Consensus 55 s~~qr~~eLqaki~ea~~~le~ 76 (107)
T PF09304_consen 55 SRNQRIAELQAKIDEARRNLED 76 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3446677777777777777665
No 132
>PHA03385 IX capsid protein IX,hexon associated protein IX; Provisional
Probab=44.87 E-value=32 Score=26.03 Aligned_cols=28 Identities=18% Similarity=0.481 Sum_probs=22.6
Q ss_pred HHHHHhHHHHhhhHHHHHHHHHHHHHhh
Q 034185 49 DSIVTKIDEMGNRINELEQSINDLRAEM 76 (102)
Q Consensus 49 ~~I~~RiDeMg~RIDdLEksI~dLm~qa 76 (102)
-.++.+++.++.|+.+|-+.+.+|..|.
T Consensus 103 ~~llaqLealsqqL~~ls~qv~~L~~~~ 130 (135)
T PHA03385 103 LVLLAQLEALSQQLQELSQQVAQLREQT 130 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhch
Confidence 3467888888999999999998887763
No 133
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=44.42 E-value=1.5e+02 Score=23.23 Aligned_cols=17 Identities=24% Similarity=0.616 Sum_probs=8.2
Q ss_pred HHHHhhhHHHHHHHHHH
Q 034185 55 IDEMGNRINELEQSIND 71 (102)
Q Consensus 55 iDeMg~RIDdLEksI~d 71 (102)
|+....|+|+|+..+..
T Consensus 193 l~~~~~~Ld~l~~rL~~ 209 (319)
T PF02601_consen 193 LEQQQQRLDELKQRLKQ 209 (319)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44444555555544443
No 134
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=43.90 E-value=1.3e+02 Score=24.89 Aligned_cols=16 Identities=19% Similarity=0.515 Sum_probs=6.9
Q ss_pred HHHHhhhHHHHHHHHH
Q 034185 55 IDEMGNRINELEQSIN 70 (102)
Q Consensus 55 iDeMg~RIDdLEksI~ 70 (102)
++..-.++|.|++.+.
T Consensus 307 l~~~~q~L~~l~~rL~ 322 (438)
T PRK00286 307 LAQQQQRLDRLQQRLQ 322 (438)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444443
No 135
>PRK15374 pathogenicity island 1 effector protein SipB; Provisional
Probab=43.69 E-value=1.2e+02 Score=27.77 Aligned_cols=56 Identities=13% Similarity=0.165 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHhhCCCCCCCC
Q 034185 28 DMTVFVQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDLRAEMGVEGSPSP 84 (102)
Q Consensus 28 dLT~~Vq~LLqQMQ~kFqtMS~~I~~RiDeMg~RIDdLEksI~dLm~qaG~e~~p~~ 84 (102)
+|....++.|..-|..=+.+.. -+++.|.--+++|++|+.+..|-.++.-..|.+|
T Consensus 124 ~lS~~ledaL~aaq~~ad~l~q-~~~~~~~Aq~~l~~aq~~l~~lq~~a~~~~P~sp 179 (593)
T PRK15374 124 QVSKEFQTALGEAQEATDLYEA-SIKKTDTAKSVYDAAEKKLTQAQNKLQSLDPADP 179 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCh
Confidence 3333334444443333333322 2456777788999999999999888766655544
No 136
>PF02185 HR1: Hr1 repeat; InterPro: IPR000861 The HR1 repeat was first described as a three times repeated homology region of the N-terminal non-catalytic part of protein kinase PRK1(PKN) []. The first two of these repeats were later shown to bind the small G protein rho [, ] known to activate PKN in its GTP-bound form. Similar rho-binding domains also occur in a number of other protein kinases and in the rho-binding proteins rhophilin and rhotekin. Recently, the structure of the N-terminal HR1 repeat complexed with RhoA has been determined by X-ray crystallography []. It forms an antiparallel coiled-coil fold termed an ACC finger. This entry includes domains found within rho-associated protein kinases.; GO: 0007165 signal transduction, 0005622 intracellular; PDB: 1CXZ_B 3O0Z_C 2RMK_B 1URF_A.
Probab=43.23 E-value=45 Score=21.00 Aligned_cols=46 Identities=15% Similarity=0.249 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHhhC
Q 034185 32 FVQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDLRAEMG 77 (102)
Q Consensus 32 ~Vq~LLqQMQ~kFqtMS~~I~~RiDeMg~RIDdLEksI~dLm~qaG 77 (102)
=.+++++.+...-..+-.++-.+|.+=.++|+-|+..|..+.....
T Consensus 19 Gae~m~~~~~t~~~~~~~~~~~~l~~s~~kI~~L~~~L~~l~~~~~ 64 (70)
T PF02185_consen 19 GAENMLQAYSTDKKKVLSEAESQLRESNQKIELLREQLEKLQQRSQ 64 (70)
T ss_dssp HHHHHHHHHCCHHCH-HHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
T ss_pred HHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 3455565542222224567778899999999999999999876544
No 137
>PF10152 DUF2360: Predicted coiled-coil domain-containing protein (DUF2360); InterPro: IPR019309 This entry represents a component of the WASH complex. The WASH complex is present at the surface of endosomes and recruits and activates the Arp2/3 complex to induce actin polymerisation. The WASH complex plays a key role in the fission of tubules that serve as transport intermediates during endosome sorting []. The WASH complex's subunit structure: F-actin-capping protein subunit alpha (CAPZA1, CAPZA2 or CAPZA3), F-actin-capping protein subunit beta (CAPZB), WASH (WASH1, WASH2P, WASH3P, WASH4P, WASH5P or WASH6P), FAM21 (FAM21A, FAM21B or FAM21C), KIAA1033, KIAA0196 (strumpellin) and CCDC53.
Probab=42.98 E-value=83 Score=22.95 Aligned_cols=28 Identities=32% Similarity=0.566 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHhHHHHhhhHHHHHHHHHHH
Q 034185 42 SRFQTMSDSIVTKIDEMGNRINELEQSINDL 72 (102)
Q Consensus 42 ~kFqtMS~~I~~RiDeMg~RIDdLEksI~dL 72 (102)
+||.. ..-.|+-+|+.||+.||..+.=|
T Consensus 13 N~F~~---~cE~kL~~~e~~Lq~~E~~l~iL 40 (148)
T PF10152_consen 13 NRFAS---VCEEKLSDMEQRLQRLEATLNIL 40 (148)
T ss_pred HHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45643 33467777788888888777533
No 138
>PRK11637 AmiB activator; Provisional
Probab=42.31 E-value=1.4e+02 Score=24.70 Aligned_cols=9 Identities=22% Similarity=0.401 Sum_probs=4.0
Q ss_pred hhchhhhHH
Q 034185 4 LICSNWLLF 12 (102)
Q Consensus 4 ~~~~~~~~~ 12 (102)
++|..+++.
T Consensus 28 ll~~~~~~~ 36 (428)
T PRK11637 28 VLSAGVLLC 36 (428)
T ss_pred HHHHHHHHh
Confidence 444444443
No 139
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=41.95 E-value=79 Score=21.61 Aligned_cols=21 Identities=29% Similarity=0.648 Sum_probs=9.3
Q ss_pred HhHHHHhhhHHHHHHHHHHHH
Q 034185 53 TKIDEMGNRINELEQSINDLR 73 (102)
Q Consensus 53 ~RiDeMg~RIDdLEksI~dLm 73 (102)
.|++.+..++++|+++|..+-
T Consensus 94 ~r~~~l~~~~~~l~~~l~~l~ 114 (129)
T cd00584 94 KKIEELTKQIEKLQKELAKLK 114 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444443
No 140
>PF06875 PRF: Plethodontid receptivity factor PRF; InterPro: IPR010681 This family consists of several plethodontid receptivity factor (PRF) proteins which seem to be specific to Plethodon jordani (Jordan's salamander). PRF is a courtship pheromone produced by males increase female receptivity [].
Probab=41.63 E-value=87 Score=25.20 Aligned_cols=34 Identities=15% Similarity=0.320 Sum_probs=30.0
Q ss_pred HHHHHhHHHHhhhHHHHHHHHHHHHHhhCCCCCC
Q 034185 49 DSIVTKIDEMGNRINELEQSINDLRAEMGVEGSP 82 (102)
Q Consensus 49 ~~I~~RiDeMg~RIDdLEksI~dLm~qaG~e~~p 82 (102)
..+..++++-..++.-|=-||..+|++.|...++
T Consensus 130 ~~L~~~Le~a~~~~qgL~sniaaIMtaLG~~~~~ 163 (214)
T PF06875_consen 130 PELLRQLEEARASAQGLLSNIAAIMTALGFPVPP 163 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCC
Confidence 3678899999999999999999999999987543
No 141
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=41.49 E-value=1.7e+02 Score=25.00 Aligned_cols=47 Identities=15% Similarity=0.330 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HH-------HHHhHHHHhhhHHHHHHHHHHHHH
Q 034185 28 DMTVFVQNLLQQMQSRFQTMS-DS-------IVTKIDEMGNRINELEQSINDLRA 74 (102)
Q Consensus 28 dLT~~Vq~LLqQMQ~kFqtMS-~~-------I~~RiDeMg~RIDdLEksI~dLm~ 74 (102)
.|...|...-..|+.+|...- .. -+++|++|..||..||+.+.+.-.
T Consensus 345 ~l~~~l~~~~~e~~~~~~~~i~~~v~~Er~~~~~~l~~~~~~~~~le~~~~~~~~ 399 (582)
T PF09731_consen 345 HLKNELREQAIELQREFEKEIKEKVEQERNGRLAKLAELNSRLKALEEALDARSE 399 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555666665432 22 247889999999999988877654
No 142
>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock
Probab=41.15 E-value=45 Score=22.50 Aligned_cols=18 Identities=28% Similarity=0.494 Sum_probs=13.6
Q ss_pred HHhHHHHhhhHHHHHHHH
Q 034185 52 VTKIDEMGNRINELEQSI 69 (102)
Q Consensus 52 ~~RiDeMg~RIDdLEksI 69 (102)
..+.+-|..||+.||+=+
T Consensus 48 ~~~a~rm~eRI~tLE~IL 65 (75)
T PF06667_consen 48 YEQAERMEERIETLERIL 65 (75)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 355677888999999755
No 143
>KOG3681 consensus Alpha-catenin [Extracellular structures]
Probab=41.02 E-value=88 Score=29.73 Aligned_cols=50 Identities=18% Similarity=0.327 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHHHhHHHHhhhHHHHHHHHHHHHHh
Q 034185 26 TADMTVFVQNLLQQMQSRFQ--TMSDSIVTKIDEMGNRINELEQSINDLRAE 75 (102)
Q Consensus 26 ~~dLT~~Vq~LLqQMQ~kFq--tMS~~I~~RiDeMg~RIDdLEksI~dLm~q 75 (102)
.+-+.++++++|.++++.+. .-++.+-.-||.|..|+.||.+.+...+.+
T Consensus 320 ~~al~q~l~d~l~E~~~~~~~k~~~~~l~~ai~~l~kkl~dLrrqLr~a~~d 371 (835)
T KOG3681|consen 320 CNALRQALQDLLSEYQSNAGRKGRSPALELAIDQLTKKLKDLKRQLRKAATD 371 (835)
T ss_pred hHHHHHHHHHHHHHHHHHhhccccChhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34677788888888888553 456778888999999999999998876654
No 144
>PRK09458 pspB phage shock protein B; Provisional
Probab=40.82 E-value=46 Score=22.79 Aligned_cols=17 Identities=35% Similarity=0.538 Sum_probs=12.4
Q ss_pred HhHHHHhhhHHHHHHHH
Q 034185 53 TKIDEMGNRINELEQSI 69 (102)
Q Consensus 53 ~RiDeMg~RIDdLEksI 69 (102)
.+-+-|..||+.||+=+
T Consensus 49 ~~A~rm~~RI~tLE~IL 65 (75)
T PRK09458 49 EKAERMRERIQALEAIL 65 (75)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44566778999998754
No 145
>PF11945 WASH_WAHD: WAHD domain of WASH complex; InterPro: IPR021854 This entry represents a component of the WASH complex. The WASH complex is present at the surface of endosomes and recruits and activates the Arp2/3 complex to induce actin polymerisation. The WASH complex plays a key role in the fission of tubules that serve as transport intermediates during endosome sorting []. The WASH complex's subunit structure: F-actin-capping protein subunit alpha (CAPZA1, CAPZA2 or CAPZA3), F-actin-capping protein subunit beta (CAPZB), WASH (WASH1, WASH2P, WASH3P, WASH4P, WASH5P or WASH6P), FAM21 (FAM21A, FAM21B or FAM21C), KIAA1033, KIAA0196 (strumpellin) and CCDC53. This entry represents the WASH subunit of the WASH complex. WASH genes duplicated to multiple chromosomal ends during primate evolution, with highest copy number reached in humans, whose WASH repertoires probably vary extensively among individuals []. It is therefore difficult to determine which gene is functional or not. The telomeric region of chromosome 9p is paralogous to the pericentromeric regions of chromosome 9 as well as to 2q. Paralogous regions contain 7 transcriptional units. Duplicated WASH genes are also present in the Xq/Yq pseudoautosomal region, as well as on chromosome 1 and 15. The chromosome 16 copy seems to be a pseudogene.
Probab=40.78 E-value=1.5e+02 Score=24.42 Aligned_cols=33 Identities=18% Similarity=0.389 Sum_probs=23.3
Q ss_pred HHHHHHHHHH---HHhHHHHhhhHHHHHHHHHHHHH
Q 034185 42 SRFQTMSDSI---VTKIDEMGNRINELEQSINDLRA 74 (102)
Q Consensus 42 ~kFqtMS~~I---~~RiDeMg~RIDdLEksI~dLm~ 74 (102)
+=|..++..| -.||.....||..+++.|..|..
T Consensus 36 diF~rI~~Rv~~~~~~l~~i~~Ri~~~qaKi~~l~g 71 (297)
T PF11945_consen 36 DIFSRISARVERNRERLQAIQQRIEVAQAKIEKLQG 71 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3344444433 36778889999999999998854
No 146
>PF10960 DUF2762: Protein of unknown function (DUF2762); InterPro: IPR024405 BhlA is a SP-beta prophage-derived protein found in Bacillus subtilis [, ] and other Bacilli. A related protein, UviB, has also been described in Clostridia, where it is believed to be involved in bacteriocin secretion or immunity [, ].
Probab=40.68 E-value=56 Score=21.74 Aligned_cols=11 Identities=36% Similarity=0.739 Sum_probs=7.8
Q ss_pred hchhhhHHhhc
Q 034185 5 ICSNWLLFWQD 15 (102)
Q Consensus 5 ~~~~~~~~~~~ 15 (102)
++..|||||.-
T Consensus 17 ~LFv~Ll~yvl 27 (71)
T PF10960_consen 17 VLFVWLLFYVL 27 (71)
T ss_pred HHHHHHHHHHH
Confidence 35679998864
No 147
>KOG2802 consensus Membrane protein HUEL (cation efflux superfamily) [General function prediction only]
Probab=40.07 E-value=75 Score=28.36 Aligned_cols=21 Identities=19% Similarity=0.521 Sum_probs=18.0
Q ss_pred HhHHHHhhhHHHHHHHHHHHH
Q 034185 53 TKIDEMGNRINELEQSINDLR 73 (102)
Q Consensus 53 ~RiDeMg~RIDdLEksI~dLm 73 (102)
.-+|-||..||.|||+|..+.
T Consensus 472 nivd~lG~EvDRlEkel~~~~ 492 (503)
T KOG2802|consen 472 NIVDTLGAEVDRLEKELKKRN 492 (503)
T ss_pred HHHHHhhhHHHHHHHHHHHhC
Confidence 446999999999999998764
No 148
>PRK07521 flgK flagellar hook-associated protein FlgK; Validated
Probab=40.06 E-value=2e+02 Score=24.51 Aligned_cols=40 Identities=15% Similarity=0.234 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHhh
Q 034185 37 LQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDLRAEM 76 (102)
Q Consensus 37 LqQMQ~kFqtMS~~I~~RiDeMg~RIDdLEksI~dLm~qa 76 (102)
++++...++.+...+-..|...-.+|+.|=++|++|-.+.
T Consensus 138 ~n~~~~~L~~~~~~~~~~i~~~V~~iN~l~~~Ia~LN~~I 177 (483)
T PRK07521 138 LNDASDAVQSARADADAEIADSVDTLNDLLAQFEDANNAV 177 (483)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566666677777788888888888888888887765
No 149
>COG5460 Uncharacterized conserved protein [Function unknown]
Probab=40.03 E-value=28 Score=24.38 Aligned_cols=22 Identities=23% Similarity=0.391 Sum_probs=18.5
Q ss_pred HHHHHHhHHHHhhhHHHHHHHH
Q 034185 48 SDSIVTKIDEMGNRINELEQSI 69 (102)
Q Consensus 48 S~~I~~RiDeMg~RIDdLEksI 69 (102)
-..|..|+++|..-|+.|||-+
T Consensus 59 ~a~i~ekl~d~te~l~~LEkpv 80 (82)
T COG5460 59 RAVIEEKLADMTEELFALEKPV 80 (82)
T ss_pred HHHHHHHHHHHHHHHHHHhccc
Confidence 3467899999999999999854
No 150
>PF00210 Ferritin: Ferritin-like domain; InterPro: IPR008331 Ferritin is one of the major non-haem iron storage proteins in animals, plants, and microorganisms []. It consists of a mineral core of hydrated ferric oxide, and a multi-subunit protein shell that encloses the former and assures its solubility in an aqueous environment. In animals the protein is mainly cytoplasmic and there are generally two or more genes that encode closely related subunits - in mammals there are two subunits which are known as H(eavy) and L(ight). In plants ferritin is found in the chloroplast []. This entry represents the main structural domain of ferritin. The domain is also found in other ferritin-like proteins such as members of the DNA protection during starvation (DPS) family and bacterioferritins.; GO: 0008199 ferric iron binding, 0006879 cellular iron ion homeostasis; PDB: 1N1Q_C 4DYU_E 2YJJ_D 2YJK_B 2VXX_B 3FVB_A 2WLU_A 2XGW_A 2WLA_A 1Z4A_D ....
Probab=39.86 E-value=52 Score=21.38 Aligned_cols=29 Identities=24% Similarity=0.284 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHhHHHHhhhHHHHHH
Q 034185 39 QMQSRFQTMSDSIVTKIDEMGNRINELEQ 67 (102)
Q Consensus 39 QMQ~kFqtMS~~I~~RiDeMg~RIDdLEk 67 (102)
-+...|+.+++......|.++.||-.|.-
T Consensus 32 ~l~~~~~~~a~e~~~h~~~l~e~i~~lgg 60 (142)
T PF00210_consen 32 GLAKFFQDQAEEEREHADELAERILMLGG 60 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred hhHHHhHHHHHHHHHHHHHHHHHHhcCCC
Confidence 35566777777777777777777776654
No 151
>PF05164 ZapA: Cell division protein ZapA; InterPro: IPR007838 This entry a structural domain found in the cell division protein ZapA, as well as in related proteins. This domain has a core structure consisting of two layers alpha/beta, and has a long C-terminal helix that forms dimeric parallel and tetrameric antiparallel coiled coils []. ZapA interacts with FtsZ, where FtsZ is part of a mid-cell cytokinetic structure termed the Z-ring that recruits a hierarchy of fission related proteins early in the bacterial cell cycle. ZapA drives the polymerisation and filament bundling of FtsZ, thereby contributing to the spatio-temporal tuning of the Z-ring.; PDB: 1T3U_B 1W2E_B 3HNW_A.
Probab=39.81 E-value=76 Score=19.98 Aligned_cols=11 Identities=0% Similarity=0.440 Sum_probs=4.9
Q ss_pred HHHHHHHHHHH
Q 034185 39 QMQSRFQTMSD 49 (102)
Q Consensus 39 QMQ~kFqtMS~ 49 (102)
+++.++.....
T Consensus 63 ~~~~~~~~~~~ 73 (89)
T PF05164_consen 63 KLKRELDELEE 73 (89)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 34444444444
No 152
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=39.62 E-value=2.3e+02 Score=23.88 Aligned_cols=57 Identities=23% Similarity=0.430 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHH-------------hHHHHhhhHHHHHHHHHHHHHh-----hCCCCCCCCCCCCCCCC
Q 034185 36 LLQQMQSRFQTMSDSIVT-------------KIDEMGNRINELEQSINDLRAE-----MGVEGSPSPLTPSKTNS 92 (102)
Q Consensus 36 LLqQMQ~kFqtMS~~I~~-------------RiDeMg~RIDdLEksI~dLm~q-----aG~e~~p~~s~~~~~~~ 92 (102)
-+++++.+...+|.+|-. ++.++..+|.+||+.+..+-.+ ..+.+.+.+++|.-+.+
T Consensus 43 ~~~~lr~~rn~~sk~i~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~iPN~~~~~vP~g~~~ 117 (425)
T PRK05431 43 ELEELQAERNALSKEIGQAKRKGEDAEALIAEVKELKEEIKALEAELDELEAELEELLLRIPNLPHDSVPVGKDE 117 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccCCCCCCC
Confidence 366677777777766643 3344555666665555544333 24778888887765433
No 153
>cd01043 DPS DPS protein, ferritin-like diiron-binding domain. DPS (DNA Protecting protein under Starved conditions) domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. Some DPS proteins nonspecifically bind DNA, protecting it from cleavage caused by reactive oxygen species such as the hydroxyl radicals produced during oxidation of Fe(II) by hydrogen peroxide. These proteins assemble into dodecameric structures, some form DPS-DNA co-crystalline complexes, and possess iron and H2O2 detoxification capabilities. Expression of DPS is induced by oxidative or nutritional stress, including metal ion starvation. Members of the DPS family are homopolymers formed by 12 four-helix bundle subunits that assemble with 23 symmetry into a hollow shell. The DPS ferroxidase site is unusual in that it is not located in a four-helix bundle as in ferritin, but is shared by 2-fold symmetry-related subunits providing the iron ligands. Many DPS sequences (e.g., E. coli) disp
Probab=39.57 E-value=60 Score=22.18 Aligned_cols=30 Identities=27% Similarity=0.493 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHhhhHHHHH
Q 034185 37 LQQMQSRFQTMSDSIVTKIDEMGNRINELE 66 (102)
Q Consensus 37 LqQMQ~kFqtMS~~I~~RiDeMg~RIDdLE 66 (102)
+..+...|+....++..-+|+++.||-.|.
T Consensus 29 f~~lh~~l~e~~~~~~~~~D~lAERi~~lg 58 (139)
T cd01043 29 FFALHELFEELYDELREAIDEIAERIRALG 58 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 445677788888888888999999988775
No 154
>TIGR02492 flgK_ends flagellar hook-associated protein FlgK. The flagellar hook-associated protein FlgK of bacterial flagella has conserved N- and C-terminal domains. The central region is highly variable in length and sequence, and often contains substantial runs of low-complexity sequence. This model is built from an alignment of FlgK sequences with the central region excised. Note that several other proteins of the flagellar apparatus also are homologous in the N- and C-terminal regions to FlgK, but are excluded from this model.
Probab=39.56 E-value=2e+02 Score=23.05 Aligned_cols=41 Identities=24% Similarity=0.357 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHhhC
Q 034185 37 LQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDLRAEMG 77 (102)
Q Consensus 37 LqQMQ~kFqtMS~~I~~RiDeMg~RIDdLEksI~dLm~qaG 77 (102)
|+++...++.+-..+-..|...=.+|+.|=++|++|-.+..
T Consensus 143 ~n~~~~~L~~~~~~~~~~i~~~V~~iN~ll~~Ia~lN~~I~ 183 (322)
T TIGR02492 143 FNQTSNELQDLRKGINAEIKSAVTEINSLLKQIASLNKEIQ 183 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55556666666667777777777778888888887766643
No 155
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=39.53 E-value=1.5e+02 Score=22.77 Aligned_cols=23 Identities=13% Similarity=0.137 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 034185 27 ADMTVFVQNLLQQMQSRFQTMSD 49 (102)
Q Consensus 27 ~dLT~~Vq~LLqQMQ~kFqtMS~ 49 (102)
.++...++.+....-+.+....+
T Consensus 44 ~~~~~p~~~~~~~~~~~~~~~~~ 66 (276)
T PRK13922 44 GDVVSPVQRVVNAPREFVSGVFE 66 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555544444444444333
No 156
>KOG1106 consensus Uncharacterized conserved protein [Function unknown]
Probab=39.43 E-value=1.4e+02 Score=23.47 Aligned_cols=57 Identities=21% Similarity=0.369 Sum_probs=30.0
Q ss_pred hchhhhHHhhc--CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hH--HHHhhhHHHHHHHHH
Q 034185 5 ICSNWLLFWQD--GHDSEDPKQSTADMTVFVQNLLQQMQSRFQTMSDSIVT--KI--DEMGNRINELEQSIN 70 (102)
Q Consensus 5 ~~~~~~~~~~~--~~~s~dpkqs~~dLT~~Vq~LLqQMQ~kFqtMS~~I~~--Ri--DeMg~RIDdLEksI~ 70 (102)
+|.-+.-|++. .-.+..+- . .-+.+-+-.|++...+.+.+ .+ -.-..|+|++|++|-
T Consensus 98 ~~phFY~fg~kl~~l~s~~~l------~---~~~se~l~~R~~~~l~~~~s~~~~~~s~~~~rLD~~E~~l~ 160 (177)
T KOG1106|consen 98 LCPHFYEFGMKLLPLDSGENL------G---IILSETLRSRVREILDSSLSATNTQTSKFVERLDEMERKLF 160 (177)
T ss_pred cccHHHHHHHHHhhcccCcch------h---HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Confidence 56666667665 33333322 1 11123344455555555554 22 455678888888764
No 157
>PF10152 DUF2360: Predicted coiled-coil domain-containing protein (DUF2360); InterPro: IPR019309 This entry represents a component of the WASH complex. The WASH complex is present at the surface of endosomes and recruits and activates the Arp2/3 complex to induce actin polymerisation. The WASH complex plays a key role in the fission of tubules that serve as transport intermediates during endosome sorting []. The WASH complex's subunit structure: F-actin-capping protein subunit alpha (CAPZA1, CAPZA2 or CAPZA3), F-actin-capping protein subunit beta (CAPZB), WASH (WASH1, WASH2P, WASH3P, WASH4P, WASH5P or WASH6P), FAM21 (FAM21A, FAM21B or FAM21C), KIAA1033, KIAA0196 (strumpellin) and CCDC53.
Probab=39.33 E-value=1.5e+02 Score=21.61 Aligned_cols=39 Identities=13% Similarity=0.385 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHH
Q 034185 30 TVFVQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDL 72 (102)
Q Consensus 30 T~~Vq~LLqQMQ~kFqtMS~~I~~RiDeMg~RIDdLEksI~dL 72 (102)
+.|+..+=....+||..++ .||+..-.++.=||.-++.+
T Consensus 9 v~fLN~F~~~cE~kL~~~e----~~Lq~~E~~l~iLEaKL~SI 47 (148)
T PF10152_consen 9 VQFLNRFASVCEEKLSDME----QRLQRLEATLNILEAKLSSI 47 (148)
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhcc
Confidence 4566666667788887776 67788888888899887654
No 158
>cd01111 HTH_MerD Helix-Turn-Helix DNA binding domain of the MerD transcription regulator. Helix-turn-helix (HTH) transcription regulator MerD. The putative secondary regulator of mercury resistance (mer) operons, MerD, has been shown to down-regulate the expression of this operon in gram-negative bacteria. It binds to the same operator DNA as MerR that activates transcription of the operon in the presence of mercury ions. The MerD protein shares the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily, which promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are conserved and contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules such as metal ions, drugs,
Probab=39.24 E-value=1.2e+02 Score=20.76 Aligned_cols=29 Identities=14% Similarity=0.224 Sum_probs=19.2
Q ss_pred HHHHHHHHHHhHHHHhhhHHHHHHHHHHH
Q 034185 44 FQTMSDSIVTKIDEMGNRINELEQSINDL 72 (102)
Q Consensus 44 FqtMS~~I~~RiDeMg~RIDdLEksI~dL 72 (102)
.+.....+..+|++...+++.|+..+.+|
T Consensus 78 ~~~~~~~~~~~l~~~~~~L~~l~~~L~~~ 106 (107)
T cd01111 78 PEACLAQLRQKIEVRRAALNALTTQLAEM 106 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44455566667777777777777776654
No 159
>PRK08471 flgK flagellar hook-associated protein FlgK; Validated
Probab=39.13 E-value=1.9e+02 Score=25.72 Aligned_cols=41 Identities=15% Similarity=0.385 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHhhC
Q 034185 37 LQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDLRAEMG 77 (102)
Q Consensus 37 LqQMQ~kFqtMS~~I~~RiDeMg~RIDdLEksI~dLm~qaG 77 (102)
++++...++.+-..+-..|...-.+|+.|=++|++|-.+.-
T Consensus 148 ~n~~~~~L~~~~~~~~~~i~~~V~~iN~ll~~Ia~LN~qI~ 188 (613)
T PRK08471 148 IKDTRERLDTLQKKVNEELKVTVDEINSLGKQIAEINKQIK 188 (613)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566667777788888899999999999999999987753
No 160
>smart00503 SynN Syntaxin N-terminal domain. Three-helix domain that (in Sso1p) slows the rate of its reaction with the SNAP-25 homologue Sec9p
Probab=38.97 E-value=1.1e+02 Score=19.90 Aligned_cols=29 Identities=21% Similarity=0.468 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHhHHHHhhhHHHHHHH
Q 034185 40 MQSRFQTMSDSIVTKIDEMGNRINELEQS 68 (102)
Q Consensus 40 MQ~kFqtMS~~I~~RiDeMg~RIDdLEks 68 (102)
+..+...+.++|..+.-+...+|..|++.
T Consensus 44 ~~~~l~~~~~~~~~~~~~i~~~lk~l~~~ 72 (117)
T smart00503 44 LREKLERLIDDIKRLAKEIRAKLKELEKE 72 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444455555555555555555544
No 161
>PF08946 Osmo_CC: Osmosensory transporter coiled coil; InterPro: IPR015041 The osmosensory transporter coiled coil is a C-terminal domain found in various bacterial osmoprotective transporters, such as ProP, Proline/betaine transporter, Proline permease 2 and the citrate proton symporters. It adopts an antiparallel coiled-coil structure, and is essential for osmosensory and osmoprotectant transporter function []. ; PDB: 1R48_B.
Probab=38.92 E-value=64 Score=20.42 Aligned_cols=27 Identities=33% Similarity=0.513 Sum_probs=22.8
Q ss_pred HHHHHhHHHHhhhHHHHHHHHHHHHHh
Q 034185 49 DSIVTKIDEMGNRINELEQSINDLRAE 75 (102)
Q Consensus 49 ~~I~~RiDeMg~RIDdLEksI~dLm~q 75 (102)
+.|-.||++.-..|-+||+.=..|..|
T Consensus 15 d~IEqkiedid~qIaeLe~KR~~Lv~q 41 (46)
T PF08946_consen 15 DNIEQKIEDIDEQIAELEAKRQRLVDQ 41 (46)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHhHHHHHHHHHHHHHHHHHHHHh
Confidence 456788999999999999998888876
No 162
>KOG1656 consensus Protein involved in glucose derepression and pre-vacuolar endosome protein sorting [Intracellular trafficking, secretion, and vesicular transport]
Probab=38.82 E-value=1.9e+02 Score=23.50 Aligned_cols=17 Identities=41% Similarity=0.466 Sum_probs=12.8
Q ss_pred HHHhhhHHHHHHHHHHH
Q 034185 56 DEMGNRINELEQSINDL 72 (102)
Q Consensus 56 DeMg~RIDdLEksI~dL 72 (102)
||.-..+|+||+.-.|.
T Consensus 160 DEL~~ELdeLeqeeld~ 176 (221)
T KOG1656|consen 160 DELMAELDELEQEELDK 176 (221)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 78888899998765543
No 163
>PRK06765 homoserine O-acetyltransferase; Provisional
Probab=38.54 E-value=31 Score=28.47 Aligned_cols=39 Identities=18% Similarity=0.333 Sum_probs=27.3
Q ss_pred eehhchhhhH--------HhhcCCCCCCC-----------CCCHHHHHHHHHHHHHHH
Q 034185 2 FCLICSNWLL--------FWQDGHDSEDP-----------KQSTADMTVFVQNLLQQM 40 (102)
Q Consensus 2 ~~~~~~~~~~--------~~~~~~~s~dp-----------kqs~~dLT~~Vq~LLqQM 40 (102)
||.||.|-|- |+=.|..|.+| .-+..|+...+..+|+++
T Consensus 100 yfvi~~n~lG~~~~~~p~~g~tgp~s~~p~tg~~~~~~fP~~t~~d~~~~~~~ll~~l 157 (389)
T PRK06765 100 YFVISTDTLCNVQVKDPNVITTGPASINPKTGKPYGMDFPVVTILDFVRVQKELIKSL 157 (389)
T ss_pred eEEEEecccCCCcCCCCCCCCCCCCCCCcCCCCccCCCCCcCcHHHHHHHHHHHHHHc
Confidence 7899999884 34445444444 346788888888888775
No 164
>KOG1511 consensus Mevalonate kinase MVK/ERG12 [Lipid transport and metabolism]
Probab=38.41 E-value=1.7e+02 Score=25.64 Aligned_cols=39 Identities=26% Similarity=0.448 Sum_probs=32.4
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhh
Q 034185 17 HDSEDPKQSTADMTVFVQNLLQQMQSRFQTMSDSIVTKIDEMGN 60 (102)
Q Consensus 17 ~~s~dpkqs~~dLT~~Vq~LLqQMQ~kFqtMS~~I~~RiDeMg~ 60 (102)
.++.-|+ |+.+|-+-|..++ .||-++-+.|+..||+.+.
T Consensus 235 tnTrv~R-nTk~lVa~Vr~~~----~kfPevi~~i~~aid~is~ 273 (397)
T KOG1511|consen 235 TNTRVPR-NTKALVAGVRELL----EKFPEVIKAIFDAIDEISL 273 (397)
T ss_pred EccccCc-cHHHHHHHHHHHH----HhhhHHHHHHHHHHHHHHH
Confidence 4667777 9999988888876 8999999999999888764
No 165
>PF15469 Sec5: Exocyst complex component Sec5
Probab=37.97 E-value=1.4e+02 Score=21.58 Aligned_cols=49 Identities=14% Similarity=0.199 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHhhCCCC
Q 034185 31 VFVQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDLRAEMGVEG 80 (102)
Q Consensus 31 ~~Vq~LLqQMQ~kFqtMS~~I~~RiDeMg~RIDdLEksI~dLm~qaG~e~ 80 (102)
.+++.++.+.+..-+.+-..+..||.++..-.++.++-|.-|+. .|+++
T Consensus 124 ~vf~~v~~eve~ii~~~r~~l~~~L~~~~~s~~~~~~~i~~Ll~-L~~~~ 172 (182)
T PF15469_consen 124 PVFQKVWSEVEKIIEEFREKLWEKLLSPPSSQEEFLKLIRKLLE-LNVEE 172 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHh-CCCCC
Confidence 45677788888888888889999999999999999999966554 55544
No 166
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=37.96 E-value=1.2e+02 Score=26.58 Aligned_cols=39 Identities=18% Similarity=0.440 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHH
Q 034185 32 FVQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSIN 70 (102)
Q Consensus 32 ~Vq~LLqQMQ~kFqtMS~~I~~RiDeMg~RIDdLEksI~ 70 (102)
.+.++++++-.+++.--.+.+.++.++-.+||+|++.|.
T Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~el~~l~~~l~ 415 (650)
T TIGR03185 377 QLEVLIQQVKRELQDAKSQLLKELRELEEELAEVDKKIS 415 (650)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444444444443334445555555555555555554
No 167
>PRK10947 global DNA-binding transcriptional dual regulator H-NS; Provisional
Probab=37.64 E-value=1.7e+02 Score=21.59 Aligned_cols=43 Identities=9% Similarity=0.253 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHH---HHHHhhCC
Q 034185 36 LLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSIN---DLRAEMGV 78 (102)
Q Consensus 36 LLqQMQ~kFqtMS~~I~~RiDeMg~RIDdLEksI~---dLm~qaG~ 78 (102)
.|+.|++||..+-.+--..-..+-..+-+-+.-|. ++|.+.|+
T Consensus 25 ~Lee~~ekl~~vv~er~ee~~~~~~~~~er~~kl~~~r~~m~~~Gi 70 (135)
T PRK10947 25 TLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQYREMLIADGI 70 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 37788888876655444333333333333333333 33555554
No 168
>PF04678 DUF607: Protein of unknown function, DUF607; InterPro: IPR006769 This entry represents the C-terminal domain of coiled-coil domain containing protein 109.
Probab=37.61 E-value=1.7e+02 Score=21.74 Aligned_cols=51 Identities=12% Similarity=0.244 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHH--HHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHhh
Q 034185 26 TADMTVFVQNLLQQMQS--RFQTMSDSIVTKIDEMGNRINELEQSINDLRAEM 76 (102)
Q Consensus 26 ~~dLT~~Vq~LLqQMQ~--kFqtMS~~I~~RiDeMg~RIDdLEksI~dLm~qa 76 (102)
|.++...|+.++..... ....-...+..+++....+|..||+.-.++...|
T Consensus 35 P~~v~~~v~~~~~~~~~~~~~~~~~~~l~~~l~~~~~el~~le~~k~~id~~A 87 (180)
T PF04678_consen 35 PKQVKEAVHRLLPLLNVEEYQNSRERQLRKRLEELRQELAPLEKIKQEIDEKA 87 (180)
T ss_pred HHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777777655521 1112233455678888888888887777766554
No 169
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=37.61 E-value=1.9e+02 Score=23.06 Aligned_cols=18 Identities=17% Similarity=0.359 Sum_probs=12.2
Q ss_pred hhHHHHHHHHHHHHHhhC
Q 034185 60 NRINELEQSINDLRAEMG 77 (102)
Q Consensus 60 ~RIDdLEksI~dLm~qaG 77 (102)
.|||+||.-+.|++...|
T Consensus 86 ~kvD~lee~fdd~~d~l~ 103 (189)
T TIGR02132 86 EKVDLIEEFFDDKFDELE 103 (189)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 466777777777766655
No 170
>COG4582 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=37.42 E-value=1.8e+02 Score=23.98 Aligned_cols=48 Identities=25% Similarity=0.470 Sum_probs=36.6
Q ss_pred HHHHHHHHH------------HHHHHHHH--HHHHhHHHHhhhHHHHHHHHHHHHHhhCCCC
Q 034185 33 VQNLLQQMQ------------SRFQTMSD--SIVTKIDEMGNRINELEQSINDLRAEMGVEG 80 (102)
Q Consensus 33 Vq~LLqQMQ------------~kFqtMS~--~I~~RiDeMg~RIDdLEksI~dLm~qaG~e~ 80 (102)
|+.|+|||. .-|.++++ .|++|++-=+.=+.+||+.=..|-...++++
T Consensus 18 ~E~L~~qle~~~t~~~~~q~~~ffrtl~dlldV~er~elkseLlKelerQ~q~l~~w~~vpg 79 (244)
T COG4582 18 IEFLIQQLEVNLTIVDHAQALHFFRTLSELLDVFERGEVRTELLKELDRQQQKLQTWIGVPG 79 (244)
T ss_pred HHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 567788874 34777776 5788998888889999998887777776654
No 171
>COG4499 Predicted membrane protein [Function unknown]
Probab=37.39 E-value=26 Score=30.80 Aligned_cols=9 Identities=44% Similarity=1.143 Sum_probs=7.5
Q ss_pred hhhHHhhcC
Q 034185 8 NWLLFWQDG 16 (102)
Q Consensus 8 ~~~~~~~~~ 16 (102)
+.|+|||..
T Consensus 316 ~~llYWi~~ 324 (434)
T COG4499 316 NYLLYWIYS 324 (434)
T ss_pred hHHHHHHHh
Confidence 679999984
No 172
>PF07586 HXXSHH: Protein of unknown function (DUF1552); InterPro: IPR011447 This is a family of proteins identified in Rhodopirellula baltica.
Probab=37.38 E-value=1.5e+02 Score=23.28 Aligned_cols=47 Identities=15% Similarity=0.170 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHhhC
Q 034185 31 VFVQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDLRAEMG 77 (102)
Q Consensus 31 ~~Vq~LLqQMQ~kFqtMS~~I~~RiDeMg~RIDdLEksI~dLm~qaG 77 (102)
.+++-++++.+.--..++..=-.|||+==+-|.+||+.|........
T Consensus 162 SvLD~v~~d~~~L~~~Lg~~Dr~kLd~yl~sireiE~rl~~~~~~~~ 208 (302)
T PF07586_consen 162 SVLDLVREDAKSLRRRLGAEDRQKLDQYLDSIREIEKRLQQAEAWAD 208 (302)
T ss_pred cHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHhhhhccc
Confidence 45555666666655566666678999999999999999966655543
No 173
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=37.37 E-value=70 Score=21.35 Aligned_cols=35 Identities=11% Similarity=0.359 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHH
Q 034185 40 MQSRFQTMSDSIVTKIDEMGNRINELEQSINDLRA 74 (102)
Q Consensus 40 MQ~kFqtMS~~I~~RiDeMg~RIDdLEksI~dLm~ 74 (102)
-...++.--+.+-.+++++-..|+.+++.++.+..
T Consensus 88 A~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~ 122 (129)
T cd00890 88 AIEFLKKRLETLEKQIEKLEKQLEKLQDQITELQE 122 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333444444444444444444444433
No 174
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=37.27 E-value=1.3e+02 Score=20.46 Aligned_cols=37 Identities=22% Similarity=0.355 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHH
Q 034185 34 QNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDLRA 74 (102)
Q Consensus 34 q~LLqQMQ~kFqtMS~~I~~RiDeMg~RIDdLEksI~dLm~ 74 (102)
+.++++++...+. +..+++.+...|.+++.++..|-+
T Consensus 5 ~~~~~~l~~~i~~----l~~~~~~l~~~~~e~~~~~~~l~~ 41 (129)
T cd00584 5 AAQLQVLQQEIEE----LQQELARLNEAIAEYEQAKETLET 41 (129)
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555444 445666777777777777766654
No 175
>KOG1760 consensus Molecular chaperone Prefoldin, subunit 4 [Posttranslational modification, protein turnover, chaperones]
Probab=36.97 E-value=1.4e+02 Score=22.56 Aligned_cols=37 Identities=14% Similarity=0.442 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHH
Q 034185 33 VQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSI 69 (102)
Q Consensus 33 Vq~LLqQMQ~kFqtMS~~I~~RiDeMg~RIDdLEksI 69 (102)
++.-|+++..+.+.--+.+-++++...+|+++|-+-+
T Consensus 82 ~~~~LEe~ke~l~k~i~~les~~e~I~~~m~~LK~~L 118 (131)
T KOG1760|consen 82 LQDQLEEKKETLEKEIEELESELESISARMDELKKVL 118 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555666677777777765543
No 176
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=36.80 E-value=1.2e+02 Score=19.56 Aligned_cols=17 Identities=18% Similarity=0.518 Sum_probs=6.6
Q ss_pred HHHHhhhHHHHHHHHHH
Q 034185 55 IDEMGNRINELEQSIND 71 (102)
Q Consensus 55 iDeMg~RIDdLEksI~d 71 (102)
|+.+..++..|++.+.+
T Consensus 78 i~~l~~~~~~l~~~l~~ 94 (106)
T PF01920_consen 78 IKKLEKQLKYLEKKLKE 94 (106)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 177
>PF03802 CitX: Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase; InterPro: IPR005551 Members of this protein family are annotated as CitX, containing the CitX domain, the domain is also found in the CitXG bifunctional protein, of the citrate lyase system. CitX transfers the prosthetic group 2'-(5''-triphosphoribosyl)-3'-dephospho-CoA to the citrate lyase gamma chain, an acyl carrier protein. This enzyme may be designated holo-ACP synthase, holo-citrate lyase synthase, or apo-citrate lyase phosphoribosyl-dephospho-CoA transferase. In a few genera, including Haemophilus, this protein occurs as a fusion protein with CitG (2.7.8.25 from EC), an enzyme involved in prosthetic group biosynthesis. This CitX family is easily separated from the holo-ACP synthases of other enzyme systems.; GO: 0051191 prosthetic group biosynthetic process
Probab=36.78 E-value=49 Score=24.75 Aligned_cols=34 Identities=18% Similarity=0.355 Sum_probs=23.1
Q ss_pred ehhchhhhHHhhcCCCCCCCCCCHHHHHHHHHHHHHHHH
Q 034185 3 CLICSNWLLFWQDGHDSEDPKQSTADMTVFVQNLLQQMQ 41 (102)
Q Consensus 3 ~~~~~~~~~~~~~~~~s~dpkqs~~dLT~~Vq~LLqQMQ 41 (102)
||||.+=...=.-+.. . |.+||.++|+.++++.-
T Consensus 135 CliC~~~Ak~CaRsr~----H-s~~El~~~i~~~~~~~~ 168 (170)
T PF03802_consen 135 CLICGRPAKECARSRR----H-SVEELQAKIEELIDEYF 168 (170)
T ss_pred ccCCChhHHHHHHcCC----C-CHHHHHHHHHHHHHHHH
Confidence 8888765433332221 2 78999999999988753
No 178
>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=36.74 E-value=2e+02 Score=25.08 Aligned_cols=59 Identities=22% Similarity=0.451 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHHH--------------HhHHHHhhhHHHHHHHHHHHHHhh-----CCCCCCCCCCCCCCCCC
Q 034185 35 NLLQQMQSRFQTMSDSIV--------------TKIDEMGNRINELEQSINDLRAEM-----GVEGSPSPLTPSKTNSG 93 (102)
Q Consensus 35 ~LLqQMQ~kFqtMS~~I~--------------~RiDeMg~RIDdLEksI~dLm~qa-----G~e~~p~~s~~~~~~~~ 93 (102)
.-++.||.+-..+|.+|- ..+.+++.+|.+||..+.++-.+. .+.+.|.+++|.-+.+.
T Consensus 43 ~~~e~l~~~rn~~sk~ig~~~~~~~~~~~~l~~e~~~l~~~l~~~e~~~~~~~~~l~~~ll~ipNi~~~~VPvg~de~ 120 (429)
T COG0172 43 RELEELQAERNELSKEIGRALKRGEDDAEELIAEVKELKEKLKELEAALDELEAELDTLLLTIPNIPHESVPVGKDED 120 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhCCCCCccccCcCCCcc
Confidence 345666777666666662 334566777777777766665554 58888888888776544
No 179
>PF05873 Mt_ATP-synt_D: ATP synthase D chain, mitochondrial (ATP5H); InterPro: IPR008689 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunit D from the F0 complex in F-ATPases found in mitochondria. The D subunit is part of the peripheral stalk that links the F1 and F0 complexes together, and which acts as a stator to prevent certain subunits from rotating with the central rotary element. The peripheral stalk differs in subunit composition between mitochondrial, chloroplast and bacterial F-ATPases. In mitochondria, the peripheral stalk is composed of one copy each of subunits OSCP (oligomycin sensitivity conferral protein), F6, B and D []. There is no homologue of subunit D in bacterial or chloroplast F-ATPase, whose peripheral stalks are composed of one copy of the delta subunit (homologous to OSCP), and two copies of subunit B in bacteria, or one copy each of subunits B and B' in chloroplasts and photosynthetic bacteria. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0000276 mitochondrial proton-transporting ATP synthase complex, coupling factor F(o); PDB: 2CLY_E 2WSS_U.
Probab=36.72 E-value=46 Score=24.78 Aligned_cols=42 Identities=14% Similarity=0.216 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHh
Q 034185 34 QNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDLRAE 75 (102)
Q Consensus 34 q~LLqQMQ~kFqtMS~~I~~RiDeMg~RIDdLEksI~dLm~q 75 (102)
++.+..++..+..+...+-.-+.+...||.+||+.|..+-+.
T Consensus 84 d~~~~~i~~~e~~~~~~~~~~~~~s~~~i~~l~keL~~i~~~ 125 (161)
T PF05873_consen 84 DKQTKEIDAQEKEAIKEAKEFEAESKKRIAELEKELANIESA 125 (161)
T ss_dssp -TTTTHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHT--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 445666666666666666666778888899999988877553
No 180
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=36.43 E-value=1.2e+02 Score=19.57 Aligned_cols=23 Identities=26% Similarity=0.471 Sum_probs=15.0
Q ss_pred HHHHhhhHHHHHHHHHHHHHhhC
Q 034185 55 IDEMGNRINELEQSINDLRAEMG 77 (102)
Q Consensus 55 iDeMg~RIDdLEksI~dLm~qaG 77 (102)
+=+=|.||++|+..-.+|-..++
T Consensus 26 ll~Rge~L~~L~~kt~~L~~~a~ 48 (89)
T PF00957_consen 26 LLERGEKLEELEDKTEELSDNAK 48 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCchHHHHHHHHHHHHHHhH
Confidence 33446777778777777766553
No 181
>PF06013 WXG100: Proteins of 100 residues with WXG; InterPro: IPR010310 ESAT-6 is a small protein appears to be of fundamental importance in virulence and protective immunity in Mycobacterium tuberculosis. Homologues have been detected in other Gram-positive bacterial species. It may represent a novel secretion system potentially driven by the PF01580 from PFAM domains in the YukA-like proteins []. Members of this protein family include secretion targets for type main variants of type VII secretion systems (T7SS), one found in the Actinobacteria, one found in the Firmicutes. This model was derived through iteration from PF06013 from PFAM. The best characterised member of this family is ESAT-6 from Mycobacterium tuberculosis. Members of this family usually are ~100 amino acids in length but occasionally have long C-terminal extension. ; PDB: 3FAV_A 1WA8_A 3Q4H_B 2KG7_A 2VRZ_B 2VS0_B 3OGI_A 3H6P_B 3GVM_B 3GWK_C ....
Probab=36.25 E-value=94 Score=18.35 Aligned_cols=8 Identities=13% Similarity=0.501 Sum_probs=2.9
Q ss_pred hHHHHhhh
Q 034185 54 KIDEMGNR 61 (102)
Q Consensus 54 RiDeMg~R 61 (102)
.+++|+..
T Consensus 66 ~L~~~~~~ 73 (86)
T PF06013_consen 66 ALEELSQA 73 (86)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 182
>PF09580 Spore_YhcN_YlaJ: Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ); InterPro: IPR019076 This entry contains YhcN and YlaJ, which are predicted lipoproteins that have been detected as spore proteins but not vegetative proteins in Bacillus subtilis. Both appear to be expressed under control of the RNA polymerase sigma-G factor. The YlaJ-like members of this family have a low-complexity, strongly acidic, 40-residue C-terminal domain.
Probab=36.14 E-value=72 Score=22.81 Aligned_cols=30 Identities=23% Similarity=0.432 Sum_probs=23.9
Q ss_pred HHHHHHhHHHHhhhH------HHHHHHHHHHHHhhC
Q 034185 48 SDSIVTKIDEMGNRI------NELEQSINDLRAEMG 77 (102)
Q Consensus 48 S~~I~~RiDeMg~RI------DdLEksI~dLm~qaG 77 (102)
-..|+.||.+|..+| +++++.|.+++...+
T Consensus 141 D~~~~~ri~~~~~~~~~g~~~~~~~~~~~~i~~r~~ 176 (177)
T PF09580_consen 141 DPDIFDRIRNLANRIRNGRPVSGFNDEIKEIVRRMF 176 (177)
T ss_pred CHHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhhC
Confidence 356788888888877 789999999988654
No 183
>COG1777 Predicted transcriptional regulators [Transcription]
Probab=36.10 E-value=1.2e+02 Score=24.58 Aligned_cols=13 Identities=23% Similarity=0.299 Sum_probs=10.2
Q ss_pred hHHhhcCCCCCCC
Q 034185 10 LLFWQDGHDSEDP 22 (102)
Q Consensus 10 ~~~~~~~~~s~dp 22 (102)
-.||+.+.+...+
T Consensus 89 ~~f~~~~~~~~~~ 101 (217)
T COG1777 89 NFFGAERFDLEED 101 (217)
T ss_pred cccceeccCcccc
Confidence 3689998888776
No 184
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=35.86 E-value=1.4e+02 Score=20.17 Aligned_cols=40 Identities=20% Similarity=0.522 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHH-----------------HHHhHHHHhhhHHHHHHHHHHH
Q 034185 33 VQNLLQQMQSRFQTMSDS-----------------IVTKIDEMGNRINELEQSINDL 72 (102)
Q Consensus 33 Vq~LLqQMQ~kFqtMS~~-----------------I~~RiDeMg~RIDdLEksI~dL 72 (102)
+..||+++..-|.+++.+ -+.-|+.+-..|-+||..-..+
T Consensus 2 l~elLd~ir~Ef~~~~~e~~~~k~~~~e~e~ki~~Qi~Em~~ir~~v~eLE~~h~km 58 (79)
T PF08581_consen 2 LNELLDAIRQEFENLSQEANSYKHQKDEYEHKINSQIQEMQQIRQKVYELEQAHRKM 58 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777777777777662 2344555666677776654433
No 185
>PF11740 KfrA_N: Plasmid replication region DNA-binding N-term; InterPro: IPR021104 The KfrA family of protiens are encoded on plasmids, generally in or near gene clusters invloved in stable inheritance functions. These proteins are thought to form an all-helical structure, consisting of an N-terminal helix-turn-helix DNA binding domain and an extended coiled-coil tail. The best-characterised KfrA protein, encoded on the broad host-range Plasmid RK2, is a site-specific DNA-binding protein whose operator overlaps its own promoter. The DNA-binding domain is essential for function, while the coiled-coil domain is probably responsible for formation of multimers, and may provide an example of a bridge to host structures required for plasmid partitioning []. This entry represents the N-terminal DNA-binding domain.
Probab=35.84 E-value=1.3e+02 Score=19.98 Aligned_cols=64 Identities=13% Similarity=0.238 Sum_probs=30.0
Q ss_pred hhHHhhcCCCCCC----CCCCHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHhHHHHhhhHHHHHHHHHHHH
Q 034185 9 WLLFWQDGHDSED----PKQSTADMTVFVQNLLQQMQSRFQ--------TMSDSIVTKIDEMGNRINELEQSINDLR 73 (102)
Q Consensus 9 ~~~~~~~~~~s~d----pkqs~~dLT~~Vq~LLqQMQ~kFq--------tMS~~I~~RiDeMg~RIDdLEksI~dLm 73 (102)
.|--|........ |. -|.+|...+..++.++-...+ ..-..+-.+++++-.++++++..+..|-
T Consensus 40 ~l~~w~~~~~~~~~~~~~~-lP~~l~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 115 (120)
T PF11740_consen 40 HLKEWREEREAQVSEAAPD-LPEALQDALAELMARLWEAAQEEAEEELEAARAELEQERAAAEAELAEAEAQAEELE 115 (120)
T ss_pred HHHHHHHhhhccccccccC-CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555433333 32 456675555555555544443 3333333444444444444444444443
No 186
>KOG3684 consensus Ca2+-activated K+ channel proteins (intermediate/small conductance classes) [Inorganic ion transport and metabolism]
Probab=35.71 E-value=1.2e+02 Score=27.32 Aligned_cols=35 Identities=23% Similarity=0.434 Sum_probs=22.8
Q ss_pred HHhHHHHhhhHHHHHHHHHHHHHhhCCCCCCCCCCCC
Q 034185 52 VTKIDEMGNRINELEQSINDLRAEMGVEGSPSPLTPS 88 (102)
Q Consensus 52 ~~RiDeMg~RIDdLEksI~dLm~qaG~e~~p~~s~~~ 88 (102)
-.|=|++..||+.||..+.+|-.. ++..|.+-+++
T Consensus 440 ~~~q~~le~qI~~Le~kl~~l~~~--l~s~~~~~~~~ 474 (489)
T KOG3684|consen 440 HSRQEELEKQIDTLESKLEALTAS--LSSLPGLLAQP 474 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HHhCchhhcCc
Confidence 356678888888888888877654 44455444333
No 187
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=35.71 E-value=1.2e+02 Score=28.35 Aligned_cols=40 Identities=13% Similarity=0.238 Sum_probs=33.6
Q ss_pred HHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHhhCCCCCCC
Q 034185 44 FQTMSDSIVTKIDEMGNRINELEQSINDLRAEMGVEGSPS 83 (102)
Q Consensus 44 FqtMS~~I~~RiDeMg~RIDdLEksI~dLm~qaG~e~~p~ 83 (102)
...|...+-.|+|+...|=|+|++-++.||.-+|.+-++.
T Consensus 614 i~e~a~~La~R~eea~e~qe~L~~~~~~L~~~~~~~lp~l 653 (741)
T KOG4460|consen 614 LREMAERLADRYEEAKEKQEDLMNRMKKLLHSFHSELPVL 653 (741)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcccccCCcc
Confidence 4456667788999999999999999999999988776553
No 188
>PF13990 YjcZ: YjcZ-like protein
Probab=35.70 E-value=98 Score=25.59 Aligned_cols=69 Identities=16% Similarity=0.195 Sum_probs=42.5
Q ss_pred hhHHhhcCCCCCCCCCCHHHHHHHHHHHHH--HHH----HHHHHHHHHHHHhHHHHhhhHHHHHHHHH--HHHHhhCC
Q 034185 9 WLLFWQDGHDSEDPKQSTADMTVFVQNLLQ--QMQ----SRFQTMSDSIVTKIDEMGNRINELEQSIN--DLRAEMGV 78 (102)
Q Consensus 9 ~~~~~~~~~~s~dpkqs~~dLT~~Vq~LLq--QMQ----~kFqtMS~~I~~RiDeMg~RIDdLEksI~--dLm~qaG~ 78 (102)
+.|-|+..-.+.-+. +.--||.+-|.|.. +.- ..|..+.+++..--+.+..|++.||+.|. +|+.++|.
T Consensus 52 ~~L~wleeLt~~l~p-ghlALT~vnq~L~~l~~~~~~~a~~s~~l~~qL~~l~~~f~qr~~~lE~~L~q~~l~~~a~~ 128 (270)
T PF13990_consen 52 ARLGWLEELTGSLDP-GHLALTRVNQRLTELQQDVARLAQYSPSLRQQLEALAEQFNQRAAHLEKALSQRGLTQQAGE 128 (270)
T ss_pred HHHHHHHHHHhccCc-chhHHHHHHHHHHHHHHhhhhhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 345566543332222 34456665555432 221 34567777777777899999999999885 67777663
No 189
>PF07195 FliD_C: Flagellar hook-associated protein 2 C-terminus; InterPro: IPR010809 The flagellar hook-associated protein 2 (HAP2 or FliD) forms the distal end of the flagella, and plays a role in mucin specific adhesion of the bacteria []. This alignment covers the C-terminal region of the flagellar hook-associated protein 2.; GO: 0007155 cell adhesion, 0009288 bacterial-type flagellum
Probab=35.30 E-value=97 Score=23.60 Aligned_cols=11 Identities=27% Similarity=0.676 Sum_probs=3.9
Q ss_pred HHhhhHHHHHH
Q 034185 57 EMGNRINELEQ 67 (102)
Q Consensus 57 eMg~RIDdLEk 67 (102)
..-.||++||+
T Consensus 204 ~~~~~i~~~~~ 214 (239)
T PF07195_consen 204 SLDKQIEDLEE 214 (239)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 190
>PF02646 RmuC: RmuC family; InterPro: IPR003798 This protein contains several bacterial RmuC DNA recombination proteins. The function of the RMUC protein is unknown but it is suspected that it is either a structural protein that protects DNA against nuclease action, or is itself involved in DNA cleavage at the regions of DNA secondary structures []. Proteins in this family are predicted to contain a central endonuclease-like fold domain, surrounded by coiled coils, consistent with a direct role in DNA cleavage [, ].
Probab=35.26 E-value=2e+02 Score=22.99 Aligned_cols=38 Identities=11% Similarity=0.311 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH------HhHHHHhhhHHHH
Q 034185 28 DMTVFVQNLLQQMQSRFQTMSDSIV------TKIDEMGNRINEL 65 (102)
Q Consensus 28 dLT~~Vq~LLqQMQ~kFqtMS~~I~------~RiDeMg~RIDdL 65 (102)
.+..-|+.+.++.+..|..+..+|- ++|.+|++.+.+|
T Consensus 17 ~~~~~l~~~~~~~~~~~~~L~~~l~~l~~~~~~~~~l~~~~~~L 60 (304)
T PF02646_consen 17 KFEKRLEESFEQRSEEFGSLKEQLKQLSEANGEIQQLSQEASNL 60 (304)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 4444555555555555656655541 3334455555554
No 191
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=34.98 E-value=1.5e+02 Score=20.40 Aligned_cols=26 Identities=12% Similarity=0.327 Sum_probs=18.3
Q ss_pred HHHHhHHHHhhhHHHHHHHHHHHHHh
Q 034185 50 SIVTKIDEMGNRINELEQSINDLRAE 75 (102)
Q Consensus 50 ~I~~RiDeMg~RIDdLEksI~dLm~q 75 (102)
++-|+++.|+.+|+.++....=|+.+
T Consensus 76 el~G~~~~l~~~l~~v~~~~~lLlE~ 101 (106)
T PF10805_consen 76 ELRGELKELSARLQGVSHQLDLLLEN 101 (106)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34478888888888887766665554
No 192
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=34.97 E-value=1.2e+02 Score=19.05 Aligned_cols=36 Identities=17% Similarity=0.440 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHH----HHHHHhHHHHhhhHHHHHHHH
Q 034185 34 QNLLQQMQSRFQTMS----DSIVTKIDEMGNRINELEQSI 69 (102)
Q Consensus 34 q~LLqQMQ~kFqtMS----~~I~~RiDeMg~RIDdLEksI 69 (102)
+++|+||.--.+.+. .++.+||-..-+.++.|++.+
T Consensus 38 ~~~l~qMe~E~~~~p~s~r~~~~~kl~~yr~~l~~lk~~l 77 (79)
T PF05008_consen 38 EELLKQMELEVRSLPPSERNQYKSKLRSYRSELKKLKKEL 77 (79)
T ss_dssp HHHHHHHHHHHCTS-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344566655554443 344555566666666665554
No 193
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=34.64 E-value=95 Score=25.78 Aligned_cols=63 Identities=21% Similarity=0.505 Sum_probs=36.1
Q ss_pred chhhhHHhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHhHHHHhhhHHHHHHHHHHHHHh
Q 034185 6 CSNWLLFWQDGHDSEDPKQSTADMTVFVQNLLQQMQSRFQTMSDS--------IVTKIDEMGNRINELEQSINDLRAE 75 (102)
Q Consensus 6 ~~~~~~~~~~~~~s~dpkqs~~dLT~~Vq~LLqQMQ~kFqtMS~~--------I~~RiDeMg~RIDdLEksI~dLm~q 75 (102)
-+.|+.||..- +|.-++-..|-. -|.++-+|++.||.. .-.-|++..+-|++|++.|.+|-.+
T Consensus 33 AgA~Y~~yQ~~------EQAr~~A~~fA~-~ld~~~~kl~~Ms~~ql~~~~~k~~~si~~q~~~i~~l~~~i~~l~~~ 103 (301)
T PF06120_consen 33 AGAWYYFYQNA------EQARQEAIEFAD-SLDELKEKLKEMSSTQLRANIAKAEESIAAQKRAIEDLQKKIDSLKDQ 103 (301)
T ss_pred HHHHHHHHHHH------HHHHHHHHHHHH-hhHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677776321 222333344443 367788888888753 2244566666666777776666544
No 194
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=34.44 E-value=52 Score=27.84 Aligned_cols=72 Identities=19% Similarity=0.515 Sum_probs=42.9
Q ss_pred eehhchhhhHHhhcCCCCCCCCCCHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHh--HH---HHhhh
Q 034185 2 FCLICSNWLLFWQDGHDSEDPKQSTADMTVFVQNLLQQM---------------QSRFQTMSDSIVTK--ID---EMGNR 61 (102)
Q Consensus 2 ~~~~~~~~~~~~~~~~~s~dpkqs~~dLT~~Vq~LLqQM---------------Q~kFqtMS~~I~~R--iD---eMg~R 61 (102)
-|-.|+.|-. | ...-.- +++.+.+-++.|.++. ..+|..+.+.|+.| ++ ...+|
T Consensus 206 ~C~FC~~~~~-~-~~~R~r----s~e~Vv~Ei~~l~~~~gv~~~~~~Dd~f~~~~~~~~~l~~~l~~~~~l~i~w~~~~r 279 (497)
T TIGR02026 206 TCNFCSQWKF-W-RRYRHR----DPKKFVDEIEWLVRTHGVGFFILADEEPTINRKKFQEFCEEIIARNPISVTWGINTR 279 (497)
T ss_pred CCCCCCCCCC-C-ceeecC----CHHHHHHHHHHHHHHcCCCEEEEEecccccCHHHHHHHHHHHHhcCCCCeEEEEecc
Confidence 4889998863 5 233332 4444444444444331 23566666777655 22 13578
Q ss_pred HHHH--HHHHHHHHHhhCCC
Q 034185 62 INEL--EQSINDLRAEMGVE 79 (102)
Q Consensus 62 IDdL--EksI~dLm~qaG~e 79 (102)
+|.+ ...+-++|.++|..
T Consensus 280 ~~~i~~d~ell~~l~~aG~~ 299 (497)
T TIGR02026 280 VTDIVRDADILHLYRRAGLV 299 (497)
T ss_pred cccccCCHHHHHHHHHhCCc
Confidence 8877 66788999999864
No 195
>PF06657 Cep57_MT_bd: Centrosome microtubule-binding domain of Cep57; InterPro: IPR010597 This entry is thought to represent a centrosomal protein of 57 kDa (Cep57-related protein). It is required for spindle microtubule attachment to both kinetochores and centrosomes and functions to tether minus-ends of spindle microtubules to centrosomes. It may act by forming ring-like structures around microtubules, or by serving as a cross-linker or scaffold at the attachment site [].
Probab=34.24 E-value=1.4e+02 Score=19.84 Aligned_cols=44 Identities=27% Similarity=0.505 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH------HhHHH-Hhhh-HHHHHHHHHHHHHhh
Q 034185 33 VQNLLQQMQSRFQTMSDSIV------TKIDE-MGNR-INELEQSINDLRAEM 76 (102)
Q Consensus 33 Vq~LLqQMQ~kFqtMS~~I~------~RiDe-Mg~R-IDdLEksI~dLm~qa 76 (102)
+..+|..||+-|..|+-+-. ..||. +|.| =.+|+..|..|+...
T Consensus 15 Ls~vl~~LqDE~~hm~~e~~~L~~~~~~~d~s~~~~~R~~L~~~l~~lv~~m 66 (79)
T PF06657_consen 15 LSEVLKALQDEFGHMKMEHQELQDEYKQMDPSLGRRKRRDLEQELEELVKRM 66 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHH
Confidence 34556666666666654322 23332 2322 357888888877664
No 196
>COG3143 CheZ Chemotaxis protein [Cell motility and secretion / Signal transduction mechanisms]
Probab=34.18 E-value=2.4e+02 Score=22.82 Aligned_cols=32 Identities=16% Similarity=0.448 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHH
Q 034185 40 MQSRFQTMSDSIVTKIDEMGNRINELEQSINDLRA 74 (102)
Q Consensus 40 MQ~kFqtMS~~I~~RiDeMg~RIDdLEksI~dLm~ 74 (102)
|-.-||.+..|||.|+=+. |.++|+++-.+..
T Consensus 140 mAQDfQDLTGQVIKrv~dl---VqeiE~~Lv~il~ 171 (217)
T COG3143 140 MAQDFQDLTGQVIKRVMDV---VQEIESQLVMILL 171 (217)
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence 4456999999999998665 7789999999883
No 197
>PRK09448 DNA starvation/stationary phase protection protein Dps; Provisional
Probab=34.14 E-value=74 Score=23.35 Aligned_cols=29 Identities=14% Similarity=0.286 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHhHHHHhhhHHHHH
Q 034185 38 QQMQSRFQTMSDSIVTKIDEMGNRINELE 66 (102)
Q Consensus 38 qQMQ~kFqtMS~~I~~RiDeMg~RIDdLE 66 (102)
.++...|+.+-+++..-+|+++.||-.|=
T Consensus 54 ~~lH~~lee~~~~~~~~~D~iAERi~~lG 82 (162)
T PRK09448 54 IAVHEMLDGFRTALEDHLDTMAERAVQLG 82 (162)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHcC
Confidence 34567788888888888899988887663
No 198
>cd00082 HisKA Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via trans-autophosphorylation by the catalytic domain of the histidine kinase. They subsequently transfer the phosphoryl group to the Asp acceptor residue of a response regulator protein. Two-component signalling systems, consisting of a histidine protein kinase that senses a signal input and a response regulator that mediates the output, are ancient and evolutionarily conserved signaling mechanisms in prokaryotes and eukaryotes.
Probab=34.06 E-value=77 Score=16.73 Aligned_cols=25 Identities=20% Similarity=0.240 Sum_probs=13.9
Q ss_pred HHHHhHHHHhhhHHHHHHHHHHHHH
Q 034185 50 SIVTKIDEMGNRINELEQSINDLRA 74 (102)
Q Consensus 50 ~I~~RiDeMg~RIDdLEksI~dLm~ 74 (102)
.+-..++.|...++.++.-+.++..
T Consensus 38 ~~~~~~~~~~~~~~~~~~l~~~l~~ 62 (65)
T cd00082 38 EQREYLERIREEAERLLRLINDLLD 62 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555556666666666553
No 199
>PF14931 IFT20: Intraflagellar transport complex B, subunit 20
Probab=33.97 E-value=1.8e+02 Score=20.94 Aligned_cols=39 Identities=15% Similarity=0.460 Sum_probs=28.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhHHH
Q 034185 25 STADMTVFVQNLLQQMQSRFQTMSDSIVTKIDEMGNRINE 64 (102)
Q Consensus 25 s~~dLT~~Vq~LLqQMQ~kFqtMS~~I~~RiDeMg~RIDd 64 (102)
.+++|..--......+. .|++++..++.-+|+.+.+|+.
T Consensus 21 ~t~~Lk~ec~~F~~ki~-~F~~iv~~~~~~~~~~A~~VE~ 59 (120)
T PF14931_consen 21 QTQELKEECKEFVEKIS-EFQKIVKGFIEILDELAKRVEN 59 (120)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 34555554445555554 5999999999999999988874
No 200
>PRK05658 RNA polymerase sigma factor RpoD; Validated
Probab=33.88 E-value=1.9e+02 Score=25.38 Aligned_cols=32 Identities=16% Similarity=0.369 Sum_probs=25.7
Q ss_pred HHHHHHhHHHHhhhHHHHHHHHHHHHHhhCCC
Q 034185 48 SDSIVTKIDEMGNRINELEQSINDLRAEMGVE 79 (102)
Q Consensus 48 S~~I~~RiDeMg~RIDdLEksI~dLm~qaG~e 79 (102)
-+.|+.+|-++..||..+|+.|..+...+|+.
T Consensus 273 id~Lv~~lr~~~~rIr~~Er~i~~~~~~~~m~ 304 (619)
T PRK05658 273 IDELVEQLRDINKRVRGQERELLRLVERLKMP 304 (619)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 34566777888999999999999977887764
No 201
>TIGR00996 Mtu_fam_mce virulence factor Mce family protein. Members of this paralogous family are found as six tandem homologous proteins in the same orientation per cassette, in four separate cassettes in Mycobacterium tuberculosis. The six members of each cassette represent six subfamilies. One subfamily includes the protein mce (mycobacterial cell entry), a virulence protein required for invasion of non-phagocytic cells.
Probab=33.79 E-value=1.5e+02 Score=22.77 Aligned_cols=16 Identities=19% Similarity=0.252 Sum_probs=9.1
Q ss_pred CHHHHHHHHHHHHHHH
Q 034185 25 STADMTVFVQNLLQQM 40 (102)
Q Consensus 25 s~~dLT~~Vq~LLqQM 40 (102)
+..+|.+-+..+++++
T Consensus 131 ~l~~ll~~~~~ll~~~ 146 (291)
T TIGR00996 131 EIDDLLGSLTRLLNGL 146 (291)
T ss_pred cHHHHHHHHHHHHhcC
Confidence 5566655555566543
No 202
>PRK00182 tatB sec-independent translocase; Provisional
Probab=33.78 E-value=1.4e+02 Score=22.97 Aligned_cols=45 Identities=9% Similarity=0.338 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhH-HHHhhhHHHHHHHHHHH
Q 034185 27 ADMTVFVQNLLQQMQSRFQTMSDSIVTKI-DEMGNRINELEQSINDL 72 (102)
Q Consensus 27 ~dLT~~Vq~LLqQMQ~kFqtMS~~I~~Ri-DeMg~RIDdLEksI~dL 72 (102)
..|-.++.. +-.+-.+|..+....-..+ +|+|..+++|.+.|.+|
T Consensus 24 erLP~~~r~-lg~~ir~~R~~~~~~k~el~~Elg~e~~elrk~l~~l 69 (160)
T PRK00182 24 ERLPRLIED-VRAALLAARTAINNAKQQLDGDFGEEFDEFRKPLNQI 69 (160)
T ss_pred hHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 344444443 3344456666666666666 67888899998877764
No 203
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=33.76 E-value=2.2e+02 Score=27.19 Aligned_cols=53 Identities=23% Similarity=0.340 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHhhCCCC
Q 034185 28 DMTVFVQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDLRAEMGVEG 80 (102)
Q Consensus 28 dLT~~Vq~LLqQMQ~kFqtMS~~I~~RiDeMg~RIDdLEksI~dLm~qaG~e~ 80 (102)
++.+..+.+..+++.+-..+..+|-.+-.+...++++||+....=+...||+.
T Consensus 718 e~~~~~~~~~~~~d~~i~~i~~~i~~~~~~~~~~~~~le~~~~~eL~~~GvD~ 770 (1201)
T PF12128_consen 718 ELKAQWQELEAELDEQIEQIKQEIAAAKQEAKEQLKELEQQYNQELAGKGVDP 770 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCH
Confidence 45566677777777777888888888888899999999999888888888875
No 204
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=33.73 E-value=2.2e+02 Score=23.66 Aligned_cols=48 Identities=27% Similarity=0.524 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHhhCCCC
Q 034185 33 VQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDLRAEMGVEG 80 (102)
Q Consensus 33 Vq~LLqQMQ~kFqtMS~~I~~RiDeMg~RIDdLEksI~dLm~qaG~e~ 80 (102)
+...++-=.+.|..-++.+..||.+...++.+-|+.+.+-..+.|...
T Consensus 182 ~~~~~~~~~~~~~~~~~~l~~~l~~lr~~~~~ae~~~~~~~~~~~l~~ 229 (458)
T COG3206 182 LADQLEAQLEAFRRASDSLDERLEELRARLQEAEAQVEDFRAQHGLTD 229 (458)
T ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc
Confidence 333444445678899999999999999999999999999999998766
No 205
>PF01297 TroA: Periplasmic solute binding protein family; InterPro: IPR006127 This is a family of ABC transporter metal-binding lipoproteins. An example is the periplasmic zinc-binding protein TroA P96116 from SWISSPROT that interacts with an ATP-binding cassette transport system in Treponema pallidum and plays a role in the transport of zinc across the cytoplasmic membrane. Related proteins are found in both Gram-positive and Gram-negative bacteria. ; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2PS9_A 2PS0_A 2OSV_A 2OGW_A 2PS3_A 2PRS_B 3MFQ_C 3GI1_B 2OV3_A 1PQ4_A ....
Probab=33.62 E-value=2e+02 Score=21.47 Aligned_cols=52 Identities=10% Similarity=0.171 Sum_probs=39.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHhh
Q 034185 25 STADMTVFVQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDLRAEM 76 (102)
Q Consensus 25 s~~dLT~~Vq~LLqQMQ~kFqtMS~~I~~RiDeMg~RIDdLEksI~dLm~qa 76 (102)
++.-+..+++++-+.|...+-.=.+.+-.+....-.||++|.+.+.+.....
T Consensus 97 dp~~~~~~~~~Ia~~L~~~~P~~~~~y~~N~~~~~~~L~~l~~~~~~~~~~~ 148 (256)
T PF01297_consen 97 DPENAKKMAEAIADALSELDPANKDYYEKNAEKYLKELDELDAEIKEKLAKL 148 (256)
T ss_dssp SHHHHHHHHHHHHHHHHHHTGGGHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 4566667777777777776666667778888888889999999888877754
No 206
>cd01052 DPSL DPS-like protein, ferritin-like diiron-binding domain. DPSL (DPS-like). DPSL is a phylogenetically distinct class within the ferritin-like superfamily, and similar in many ways to the DPS (DNA Protecting protein under Starved conditions) proteins. Like DPS, these proteins are expressed in response to oxidative stress, form dodecameric cage-like particles, preferentially utilize hydrogen peroxide in the controlled oxidation of iron, and possess a short N-terminal extension implicated in stabilizing cellular DNA. This domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. These proteins are distantly related to bacterial ferritins which assemble 24 monomers, each of which have a four-helix bundle with a fifth shorter helix at the C terminus and a diiron (ferroxidase) center. Ferritins contain a center where oxidation of ferrous iron by molecular oxygen occurs, facilitating the detoxification of iron, protection against dioxygen and radical
Probab=33.57 E-value=95 Score=21.05 Aligned_cols=30 Identities=13% Similarity=0.284 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHhhhHHHHH
Q 034185 37 LQQMQSRFQTMSDSIVTKIDEMGNRINELE 66 (102)
Q Consensus 37 LqQMQ~kFqtMS~~I~~RiDeMg~RIDdLE 66 (102)
+..+...|+..+.+...-+|.++.||-.|.
T Consensus 37 f~~l~~~~~~~~~ee~~Had~laEri~~lG 66 (148)
T cd01052 37 GEGIKEELEEAAEEELNHAELLAERIYELG 66 (148)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 445777888888888888888888887764
No 207
>PF15027 DUF4525: Domain of unknown function (DUF4525)
Probab=33.54 E-value=1.1e+02 Score=23.22 Aligned_cols=30 Identities=20% Similarity=0.442 Sum_probs=23.7
Q ss_pred HHHHHHHHHhHHHHhhhHHHHHHHHHHHHH
Q 034185 45 QTMSDSIVTKIDEMGNRINELEQSINDLRA 74 (102)
Q Consensus 45 qtMS~~I~~RiDeMg~RIDdLEksI~dLm~ 74 (102)
..+-..|---+|+|=.||+.||..+.-++.
T Consensus 78 aDLKktiAVLLddiLqRl~kLE~kvd~lvv 107 (138)
T PF15027_consen 78 ADLKKTIAVLLDDILQRLVKLESKVDNLVV 107 (138)
T ss_pred HHHhhhhhhhhhHHHHHHHHHHHHHHHHee
Confidence 345555666689999999999999998654
No 208
>PHA02604 rI.-1 hypothetical protein; Provisional
Probab=33.53 E-value=1.4e+02 Score=22.36 Aligned_cols=36 Identities=17% Similarity=0.435 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhHH
Q 034185 28 DMTVFVQNLLQQMQSRFQTMSDSIVTKIDEMGNRIN 63 (102)
Q Consensus 28 dLT~~Vq~LLqQMQ~kFqtMS~~I~~RiDeMg~RID 63 (102)
+-+.+|++||+.-+.-|..+-..+..-+||+-.-++
T Consensus 82 d~~~~l~~~l~~a~~i~~~l~s~L~N~~DdI~~~~~ 117 (126)
T PHA02604 82 DTIAFLDELLQEAEEIYKELPSALQSTLDDITGLCY 117 (126)
T ss_pred CHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 889999999999999999998888888888766544
No 209
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=33.46 E-value=2.8e+02 Score=23.07 Aligned_cols=47 Identities=17% Similarity=0.310 Sum_probs=23.7
Q ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHH
Q 034185 27 ADMTVFVQNLL----QQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDLR 73 (102)
Q Consensus 27 ~dLT~~Vq~LL----qQMQ~kFqtMS~~I~~RiDeMg~RIDdLEksI~dLm 73 (102)
..|-..|..+| ++|+.-++.+-..+-.||.|+-.--++||-.+...+
T Consensus 221 ~~LR~~i~~~l~~~~~dl~~Q~~~vn~al~~Ri~et~~ak~~Le~ql~~~~ 271 (384)
T PF03148_consen 221 AQLREDIDSILEQTANDLRAQADAVNAALRKRIHETQEAKNELEWQLKKTL 271 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 34444444444 445555566666666666655554444444444333
No 210
>PF08653 DASH_Dam1: DASH complex subunit Dam1; InterPro: IPR013962 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=33.39 E-value=63 Score=20.91 Aligned_cols=10 Identities=40% Similarity=0.767 Sum_probs=4.2
Q ss_pred HHHHHHHHHH
Q 034185 42 SRFQTMSDSI 51 (102)
Q Consensus 42 ~kFqtMS~~I 51 (102)
.+|..++|.+
T Consensus 5 ~~f~eL~D~~ 14 (58)
T PF08653_consen 5 PQFAELSDSM 14 (58)
T ss_pred HHHHHHHHHH
Confidence 3444444433
No 211
>PF02108 FliH: Flagellar assembly protein FliH; InterPro: IPR018035 This entry represents a region found in the flagellar assembly protein FliH, as well as in type III secretion system protein HrpE. Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export []. The sequence of fliH has been deduced and shown to encode a protein of molecular mass of 25,782 Da. Bacterial HrpE proteins are belived to function on the type III secretion system, specifically the secretion of HrpZ (harpinPss) [].
Probab=33.17 E-value=1.4e+02 Score=19.53 Aligned_cols=37 Identities=11% Similarity=0.321 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhH
Q 034185 26 TADMTVFVQNLLQQMQSRFQTMSDSIVTKIDEMGNRI 62 (102)
Q Consensus 26 ~~dLT~~Vq~LLqQMQ~kFqtMS~~I~~RiDeMg~RI 62 (102)
.++|.++++++-++.+..++.+...|+.-.=.+.+||
T Consensus 4 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~iae~v 40 (128)
T PF02108_consen 4 QAELEQLLEELEEALQELLEELEQELVELALAIAEKV 40 (128)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666555555555555555554444444433
No 212
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=33.01 E-value=58 Score=28.38 Aligned_cols=21 Identities=29% Similarity=0.618 Sum_probs=17.2
Q ss_pred HHHHhhhHHHHHHHHHHHHHh
Q 034185 55 IDEMGNRINELEQSINDLRAE 75 (102)
Q Consensus 55 iDeMg~RIDdLEksI~dLm~q 75 (102)
++.+..||..||+.+..+...
T Consensus 371 ~~~~~~~~~~l~~~~~~~~~~ 391 (559)
T PRK05563 371 LEVLLQRVEQLEQELKQLKAQ 391 (559)
T ss_pred HHHHHHHHHHHHHHHHhcccC
Confidence 567788999999999887653
No 213
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=32.97 E-value=2.5e+02 Score=23.72 Aligned_cols=44 Identities=14% Similarity=0.305 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-----HHhHHHHhhhHHHHHHHHHHHH
Q 034185 30 TVFVQNLLQQMQSRFQTMSDSI-----VTKIDEMGNRINELEQSINDLR 73 (102)
Q Consensus 30 T~~Vq~LLqQMQ~kFqtMS~~I-----~~RiDeMg~RIDdLEksI~dLm 73 (102)
...+++.|++-+.+|+.+...+ ..+|.....|++.|.+.+...|
T Consensus 317 ~~a~~~~L~~k~~rL~~L~~rL~aLSPl~~~~~~~~~l~~~~~~l~~~~ 365 (432)
T TIGR00237 317 QAALNKQLERTRQKKTRLTKRLTQTNPSPQILRAQTRTEQLNRRLNALK 365 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444445455555444333 2345555556666655544433
No 214
>PF09277 Erythro-docking: Erythronolide synthase, docking; InterPro: IPR015357 Docking domains are found in prokaryotic erythronolide synthase. They adopt a structure consisting of a bundle of four alpha-helices, and mediate homodimerisation of the protein, stabilising the resulting complex []. ; PDB: 1PZQ_A.
Probab=32.90 E-value=25 Score=23.22 Aligned_cols=20 Identities=30% Similarity=0.529 Sum_probs=16.1
Q ss_pred HhhhHHHHHHHHHHHHHhhC
Q 034185 58 MGNRINELEQSINDLRAEMG 77 (102)
Q Consensus 58 Mg~RIDdLEksI~dLm~qaG 77 (102)
.|.|+|.||+-+..|=.+.|
T Consensus 8 v~a~lDrLE~aL~aLpd~dG 27 (58)
T PF09277_consen 8 VGAELDRLEAALLALPDEDG 27 (58)
T ss_dssp THHHHHHHHHHHHHHTTSS-
T ss_pred hhHHHHHHHHHHhcCCcccc
Confidence 57899999999988877766
No 215
>KOG2336 consensus Molybdopterin biosynthesis-related protein [Coenzyme transport and metabolism]
Probab=32.89 E-value=70 Score=27.81 Aligned_cols=29 Identities=21% Similarity=0.457 Sum_probs=23.6
Q ss_pred HHHHhhhHHHHHHHHHHHHHhhCCCCCCC
Q 034185 55 IDEMGNRINELEQSINDLRAEMGVEGSPS 83 (102)
Q Consensus 55 iDeMg~RIDdLEksI~dLm~qaG~e~~p~ 83 (102)
++-|..+||.|++.|.||-.+.-.+....
T Consensus 5 ~~~l~~~ld~l~~~l~d~~~~~~~e~~~~ 33 (422)
T KOG2336|consen 5 FKALLDDLDVLQKRLSDLKLELKLESSSE 33 (422)
T ss_pred HHHHHHHHHHHHHHhhhhhhhcccccccc
Confidence 67788999999999999988877665443
No 216
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=32.85 E-value=2.4e+02 Score=22.09 Aligned_cols=27 Identities=22% Similarity=0.314 Sum_probs=21.9
Q ss_pred HHHhHHHHhhhHHHHHHHHHHHHHhhC
Q 034185 51 IVTKIDEMGNRINELEQSINDLRAEMG 77 (102)
Q Consensus 51 I~~RiDeMg~RIDdLEksI~dLm~qaG 77 (102)
.....-+|+.=|+++|+.|+.+|.+..
T Consensus 35 ~~~~~~~m~~i~~e~Ek~i~~~i~e~~ 61 (207)
T PF05010_consen 35 LHKENQEMRKIMEEYEKTIAQMIEEKQ 61 (207)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667899999999999999998753
No 217
>KOG0796 consensus Spliceosome subunit [RNA processing and modification]
Probab=32.84 E-value=2.2e+02 Score=24.21 Aligned_cols=25 Identities=24% Similarity=0.449 Sum_probs=19.8
Q ss_pred HhHHHHhhh---HHHHHHHHHHHHHhhC
Q 034185 53 TKIDEMGNR---INELEQSINDLRAEMG 77 (102)
Q Consensus 53 ~RiDeMg~R---IDdLEksI~dLm~qaG 77 (102)
.+++++... |..||..|+.++.+++
T Consensus 112 e~~~e~~~k~~~v~~l~e~I~~~l~~~E 139 (319)
T KOG0796|consen 112 ERSEEAARKAEKVHELEEKIGKLLEKAE 139 (319)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666655 9999999999998865
No 218
>PF09551 Spore_II_R: Stage II sporulation protein R (spore_II_R); InterPro: IPR014202 This entry is designated stage II sporulation protein R. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species. SpoIIR is a signalling protein that links the activation of sigma E to the transcriptional activity of sigma F during sporulation [, ].
Probab=32.34 E-value=1.9e+02 Score=21.43 Aligned_cols=56 Identities=14% Similarity=0.203 Sum_probs=40.5
Q ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHhhCCCCCC
Q 034185 26 TADMTVFVQ-NLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDLRAEMGVEGSP 82 (102)
Q Consensus 26 ~~dLT~~Vq-~LLqQMQ~kFqtMS~~I~~RiDeMg~RIDdLEksI~dLm~qaG~e~~p 82 (102)
-|.|---|. .+|..|+.+|....+ +-.-..-..+.+++||+-..+.+.+.|..-+.
T Consensus 18 DQ~lKl~VRD~Vl~~l~~~~~~~~~-~~ea~~~i~~~~~~Ie~~A~~~l~~~G~~y~v 74 (130)
T PF09551_consen 18 DQALKLKVRDAVLEYLSPWLSQAKS-KEEAREVIRENLPEIEQIAEEVLAEEGYDYPV 74 (130)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCC-HHHHHHHHHHhHHHHHHHHHHHHHHhCCCCcE
Confidence 567755554 789999999975432 33334455677899999999999999976543
No 219
>PLN02554 UDP-glycosyltransferase family protein
Probab=32.27 E-value=1.7e+02 Score=24.67 Aligned_cols=50 Identities=16% Similarity=0.302 Sum_probs=43.7
Q ss_pred CHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHH
Q 034185 25 STADMTVFVQNLL---QQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDLRA 74 (102)
Q Consensus 25 s~~dLT~~Vq~LL---qQMQ~kFqtMS~~I~~RiDeMg~RIDdLEksI~dLm~ 74 (102)
+.++|...|..+| ..++.|=..+++.+-..+.+-|+--.+|++=|.++..
T Consensus 426 ~~e~l~~av~~vm~~~~~~r~~a~~l~~~~~~av~~gGss~~~l~~lv~~~~~ 478 (481)
T PLN02554 426 TAEEIERGIRCLMEQDSDVRKRVKEMSEKCHVALMDGGSSHTALKKFIQDVTK 478 (481)
T ss_pred cHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHh
Confidence 6889999999999 4788899999999999999999888888888887765
No 220
>PF09177 Syntaxin-6_N: Syntaxin 6, N-terminal; InterPro: IPR015260 Members of this entry, which are found in the amino terminus of various SNARE proteins, adopt a structure consisting of an antiparallel three-helix bundle. Their exact function has not been determined, though it is known that they regulate the SNARE motif, as well as mediate various protein-protein interactions involved in membrane-transport []. ; GO: 0048193 Golgi vesicle transport, 0016020 membrane; PDB: 1LVF_B 2C5I_T 2C5J_A 2C5K_T 4DND_A.
Probab=31.80 E-value=1.6e+02 Score=19.59 Aligned_cols=24 Identities=8% Similarity=0.357 Sum_probs=13.2
Q ss_pred HHHHHHHhHHHHhhhHHHHHHHHH
Q 034185 47 MSDSIVTKIDEMGNRINELEQSIN 70 (102)
Q Consensus 47 MS~~I~~RiDeMg~RIDdLEksI~ 70 (102)
...++...|.+.-.-|+|||++|.
T Consensus 40 ~~~eL~~~l~~ie~~L~DL~~aV~ 63 (97)
T PF09177_consen 40 LKRELRNALQSIEWDLEDLEEAVR 63 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555566665554
No 221
>PF03670 UPF0184: Uncharacterised protein family (UPF0184); InterPro: IPR022788 This family of proteins has no known function.
Probab=31.72 E-value=1.5e+02 Score=20.66 Aligned_cols=27 Identities=26% Similarity=0.468 Sum_probs=15.0
Q ss_pred HHHHHhHHHHhhhHHHHHHHHHHHHHh
Q 034185 49 DSIVTKIDEMGNRINELEQSINDLRAE 75 (102)
Q Consensus 49 ~~I~~RiDeMg~RIDdLEksI~dLm~q 75 (102)
..|-..||...+.+|.||+.-.+|..+
T Consensus 29 ~~ins~LD~Lns~LD~LE~rnD~l~~~ 55 (83)
T PF03670_consen 29 AAINSMLDQLNSCLDHLEQRNDHLHAQ 55 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 345555566666666666555555544
No 222
>PHA01750 hypothetical protein
Probab=31.70 E-value=1.7e+02 Score=20.08 Aligned_cols=25 Identities=20% Similarity=0.525 Sum_probs=17.5
Q ss_pred HHHhHHHHhhhHHHHHHHHHHHHHh
Q 034185 51 IVTKIDEMGNRINELEQSINDLRAE 75 (102)
Q Consensus 51 I~~RiDeMg~RIDdLEksI~dLm~q 75 (102)
+...|.+.--|+|+||+.|.|+-..
T Consensus 47 L~~ei~~~kikqDnl~~qv~eik~k 71 (75)
T PHA01750 47 LKTEIEELKIKQDELSRQVEEIKRK 71 (75)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 3445666778888888888887653
No 223
>PRK10170 hydrogenase 1 large subunit; Provisional
Probab=31.70 E-value=3.6e+02 Score=24.40 Aligned_cols=51 Identities=12% Similarity=0.147 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHhhCCC
Q 034185 28 DMTVFVQNLLQQ----MQSRFQTMSDSIVTKIDEMGNRINELEQSINDLRAEMGVE 79 (102)
Q Consensus 28 dLT~~Vq~LLqQ----MQ~kFqtMS~~I~~RiDeMg~RIDdLEksI~dLm~qaG~e 79 (102)
.+...|+.++.. ...-|.+|. .+++|+-|.--.++.+...+.+++.....-
T Consensus 426 ~~~~~~~~~~~~~~~~~~~l~st~g-R~~AR~~e~~~~~~~~~~~~~~~l~~i~~g 480 (597)
T PRK10170 426 ATVESVDRMMSALNLPLSGIQSTLG-RILCRAHEAQWAAGKLQYFFDKLMTNLKNG 480 (597)
T ss_pred hHHHHHHHHHHhcCCcHHHhhhHHh-HHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 345556666655 233477777 899999999999999999999999887643
No 224
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=31.60 E-value=1.7e+02 Score=19.85 Aligned_cols=28 Identities=25% Similarity=0.387 Sum_probs=13.3
Q ss_pred HHHHHHHHhHHHHhhhHHHHHHHHHHHH
Q 034185 46 TMSDSIVTKIDEMGNRINELEQSINDLR 73 (102)
Q Consensus 46 tMS~~I~~RiDeMg~RIDdLEksI~dLm 73 (102)
.|-.....|..+|.....+|++++.+|-
T Consensus 28 ~mN~~~~~kY~~~~~~~~~l~~~~~~l~ 55 (99)
T PF10046_consen 28 NMNKATSLKYKKMKDIAAGLEKNLEDLN 55 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444455555555555554444443
No 225
>PHA02335 hypothetical protein
Probab=31.56 E-value=93 Score=23.07 Aligned_cols=41 Identities=15% Similarity=0.272 Sum_probs=28.7
Q ss_pred hhchhhhHHhhcCCCCCCCCCCHHHHHHHHH--HHHHHHHHHHH
Q 034185 4 LICSNWLLFWQDGHDSEDPKQSTADMTVFVQ--NLLQQMQSRFQ 45 (102)
Q Consensus 4 ~~~~~~~~~~~~~~~s~dpkqs~~dLT~~Vq--~LLqQMQ~kFq 45 (102)
|-|+||++|-....+..++- +-.|+-.-++ .++.++=.||.
T Consensus 6 l~~~n~m~fAi~~Y~np~sV-t~ddf~~DlkRi~yIkrllKRy~ 48 (118)
T PHA02335 6 LNEGNYMLFAIKNYNNPQSV-TYDDFEEDLKRFKYIKRLFKRYL 48 (118)
T ss_pred CCchhHHHHHHHhcCCcccc-cHHHHHHHHHHHHHHHHHHHhhc
Confidence 56999999999987766655 6677766665 34555555554
No 226
>PF10280 Med11: Mediator complex protein ; InterPro: IPR019404 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med11 of the Mediator complex []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex; PDB: 3R84_S 3RJ1_O.
Probab=31.51 E-value=41 Score=23.62 Aligned_cols=18 Identities=28% Similarity=0.510 Sum_probs=14.6
Q ss_pred hHHHHHHHHHHHHHhhCC
Q 034185 61 RINELEQSINDLRAEMGV 78 (102)
Q Consensus 61 RIDdLEksI~dLm~qaG~ 78 (102)
+|++.|+.|..||..||-
T Consensus 7 ~L~~Idk~I~~lL~~A~~ 24 (117)
T PF10280_consen 7 QLNEIDKKIVSLLQHAGQ 24 (117)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 467788899999988884
No 227
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=31.51 E-value=84 Score=23.22 Aligned_cols=28 Identities=18% Similarity=0.489 Sum_probs=14.2
Q ss_pred HHHHhHHHHhhhHHHHHHHHHHHHHhhC
Q 034185 50 SIVTKIDEMGNRINELEQSINDLRAEMG 77 (102)
Q Consensus 50 ~I~~RiDeMg~RIDdLEksI~dLm~qaG 77 (102)
.|+..+++|..+|..|=+.|.+|-+++|
T Consensus 5 eiFd~v~~le~~l~~l~~el~~lK~~l~ 32 (114)
T COG4467 5 EIFDQVDNLEEQLGVLLAELGGLKQHLG 32 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555555544444443
No 228
>COG0598 CorA Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]
Probab=31.49 E-value=73 Score=25.37 Aligned_cols=38 Identities=26% Similarity=0.472 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHhHH-HHhhhHHHHHHHHHHHHH
Q 034185 37 LQQMQSRFQTMSDSIVTKID-EMGNRINELEQSINDLRA 74 (102)
Q Consensus 37 LqQMQ~kFqtMS~~I~~RiD-eMg~RIDdLEksI~dLm~ 74 (102)
|+++.++-+.+.++|+..-. ++-.||-+|++.+..+..
T Consensus 156 le~i~~~~~~ie~~l~~~~~~~~l~~l~~l~~~l~~lr~ 194 (322)
T COG0598 156 LEQIEDELEAIEDQLLASTTNEELERLGELRRSLVYLRR 194 (322)
T ss_pred HHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444333221 244555566665554443
No 229
>PF12296 HsbA: Hydrophobic surface binding protein A; InterPro: IPR021054 Hydrophobic surface binding proteins are typically between 171 to 275 amino acids in length. Although the HsbA amino acid sequence suggests that HsbA may be hydrophilic, HsbA adsorbed to hydrophobic PBSA (Polybutylene succinate-co-adipate) surfaces in the presence of NaCl or CaCl2. When HsbA was adsorbed on the hydrophobic PBSA surfaces, it promoted PBSA degradation via the CutL1 polyesterase. CutL1 interacts directly with HsbA attached to the hydrophobic QCM electrode surface. These results suggest that when HsbA is adsorbed onto the PBSA surface, it recruits CutL1, and that when CutL1 is accumulated on the PBSA surface, it stimulates PBSA degradation []. This entry is also characterised by a antigenic cell wall galactomannoprotein in Aspergillus fumigatus, which is a protein of 284 amino acid residues. It contains a serine- and threonine-rich region for O glycosylation, a signal peptide, and a putative glycosylphosphatidyl inositol attachment signal sequence. Ultrastructural analysis showed that the protein is present in the cell walls of hyphae and conidia []. ; PDB: 3L1N_A.
Probab=31.41 E-value=1.1e+02 Score=20.29 Aligned_cols=43 Identities=9% Similarity=0.333 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHH---HHH--HHHHHHHhHHHHhhhHHHHHHHH
Q 034185 27 ADMTVFVQNLLQQMQSR---FQT--MSDSIVTKIDEMGNRINELEQSI 69 (102)
Q Consensus 27 ~dLT~~Vq~LLqQMQ~k---Fqt--MS~~I~~RiDeMg~RIDdLEksI 69 (102)
+.|...|+.+|..+..| |.. ....+...|..+-..-+.|...|
T Consensus 74 ~~l~~~i~~~l~~l~~Kk~~f~~~g~~~~v~~~L~~l~~~~~~l~~al 121 (124)
T PF12296_consen 74 QTLQPDIQDALNALIAKKPAFDAAGLCSVVRADLQDLKTASDALSDAL 121 (124)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHTT-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHhHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566666666554 553 55666666777666666665554
No 230
>COG3609 Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain [Transcription]
Probab=31.40 E-value=91 Score=20.93 Aligned_cols=47 Identities=17% Similarity=0.362 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHH
Q 034185 26 TADMTVFVQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDLRA 74 (102)
Q Consensus 26 ~~dLT~~Vq~LLqQMQ~kFqtMS~~I~~RiDeMg~RIDdLEksI~dLm~ 74 (102)
+..+..+|+.+.+. .+|.+.|+-|=.-+-.+-.+..+-+..+..+-.
T Consensus 10 p~~~~~~i~~lV~~--G~y~s~SeviR~alr~l~~~~~~~~~~~~~~~~ 56 (89)
T COG3609 10 PEQLVEFIDELVES--GRYKSRSEVIRAALRLLLEKRVDEEARLRALRE 56 (89)
T ss_pred CHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788888888887 999999999998888888877777666666654
No 231
>PF12792 CSS-motif: CSS motif domain associated with EAL ; InterPro: IPR024744 This domain, with its characteristic highly conserved CSS sequence motif, is found N-terminal to the EAL domain (PF00563 from PFAM), found in many putative cyclic diguanylate phosphodiesterases.
Probab=31.11 E-value=1.3e+02 Score=20.77 Aligned_cols=29 Identities=17% Similarity=0.369 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 034185 26 TADMTVFVQNLLQQMQSRFQTMSDSIVTKI 55 (102)
Q Consensus 26 ~~dLT~~Vq~LLqQMQ~kFqtMS~~I~~Ri 55 (102)
.+++..+.+.+++++..-|..+ .+++.++
T Consensus 4 ~~~~~~~a~~~~~~~e~~~~~~-~~~~~~~ 32 (208)
T PF12792_consen 4 QRDLDTYAQRALQRIESVLDQA-RQALDAL 32 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 3466666666666666666554 3444443
No 232
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=31.01 E-value=2.8e+02 Score=22.17 Aligned_cols=34 Identities=12% Similarity=0.096 Sum_probs=28.6
Q ss_pred HHHHHHHhHHHHhhhHHHHHHHHHHHHHhhCCCC
Q 034185 47 MSDSIVTKIDEMGNRINELEQSINDLRAEMGVEG 80 (102)
Q Consensus 47 MS~~I~~RiDeMg~RIDdLEksI~dLm~qaG~e~ 80 (102)
-...+-.++++...|+++.|+.+.+..++.|+-.
T Consensus 171 a~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~~~d 204 (362)
T TIGR01010 171 TIAFAENEVKEAEQRLNATKAELLKYQIKNKVFD 204 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcC
Confidence 3446678899999999999999999999988754
No 233
>PF03233 Cauli_AT: Aphid transmission protein; InterPro: IPR004917 This protein is found in various caulimoviruses. It codes for an 18 kDa protein (PII), which is dispensable for infection but which is required for aphid transmission of the virus []. This protein interacts with the PIII protein []. ; GO: 0019089 transmission of virus
Probab=30.68 E-value=2.6e+02 Score=21.69 Aligned_cols=60 Identities=18% Similarity=0.367 Sum_probs=34.2
Q ss_pred HhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH------HHHHHHhHHHHhhhHHHHHHHHHHHHHh
Q 034185 12 FWQDGHDSEDPKQSTADMTVFVQNLLQQMQSRFQTM------SDSIVTKIDEMGNRINELEQSINDLRAE 75 (102)
Q Consensus 12 ~~~~~~~s~dpkqs~~dLT~~Vq~LLqQMQ~kFqtM------S~~I~~RiDeMg~RIDdLEksI~dLm~q 75 (102)
|++.--.|+.-+.+...+.++. .++...|..- ....+..+-+|+.||+.||..+..|-.+
T Consensus 68 lGleKD~Se~~S~~K~Pf~~~~----k~~~~ifkegg~d~~k~~~~l~~L~e~snki~kLe~~~k~L~d~ 133 (163)
T PF03233_consen 68 LGLEKDPSEGLSKSKSPFESFF----KDLSKIFKEGGGDKQKQLKLLPTLEEISNKIRKLETEVKKLKDN 133 (163)
T ss_pred hccccCCccccccCCCcHHHHH----HHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhHhhh
Confidence 5554333332222444554444 3444555432 1124567788888999999888888766
No 234
>COG4839 FtsL Protein required for the initiation of cell division [Cell division and chromosome partitioning]
Probab=30.51 E-value=1.7e+02 Score=21.75 Aligned_cols=22 Identities=32% Similarity=0.490 Sum_probs=18.7
Q ss_pred HHhHHHHhhhHHHHHHHHHHHH
Q 034185 52 VTKIDEMGNRINELEQSINDLR 73 (102)
Q Consensus 52 ~~RiDeMg~RIDdLEksI~dLm 73 (102)
-.+|++=.+++|+|++.|.||-
T Consensus 73 e~kIs~q~~e~~dlkqeV~dLs 94 (120)
T COG4839 73 ESKISEQKTENDDLKQEVKDLS 94 (120)
T ss_pred HHHHHHHHhhhhhHHHHHHHhc
Confidence 3678888999999999999874
No 235
>cd01145 TroA_c Periplasmic binding protein TroA_c. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=30.44 E-value=2.2e+02 Score=20.92 Aligned_cols=51 Identities=6% Similarity=0.055 Sum_probs=33.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHh
Q 034185 25 STADMTVFVQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDLRAE 75 (102)
Q Consensus 25 s~~dLT~~Vq~LLqQMQ~kFqtMS~~I~~RiDeMg~RIDdLEksI~dLm~q 75 (102)
++.-+..+++++-+.|...+-.=.+.+..+.+..-.+|++|++.+.+.+..
T Consensus 113 dp~~~~~~a~~I~~~L~~~dP~~~~~y~~N~~~~~~~l~~l~~~~~~~l~~ 163 (203)
T cd01145 113 DPNNAPALAKALADALIELDPSEQEEYKENLRVFLAKLNKLLREWERQFEG 163 (203)
T ss_pred CHHHHHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 344555666666666655554445566677777777788888777777664
No 236
>PF15249 GLTSCR1: Glioma tumor suppressor candidate region
Probab=30.43 E-value=93 Score=21.47 Aligned_cols=26 Identities=19% Similarity=0.475 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHhHHHHhhhHHHH
Q 034185 40 MQSRFQTMSDSIVTKIDEMGNRINEL 65 (102)
Q Consensus 40 MQ~kFqtMS~~I~~RiDeMg~RIDdL 65 (102)
..+.|++.+.+++.|.+.|..|...|
T Consensus 53 ~d~~~e~~~~~~~~~~~~~~~k~~~l 78 (109)
T PF15249_consen 53 WDEEFETVAAELLKRFEKMLNKYRRL 78 (109)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56678888888888888888887765
No 237
>KOG3313 consensus Molecular chaperone Prefoldin, subunit 3 [Posttranslational modification, protein turnover, chaperones]
Probab=30.40 E-value=1.4e+02 Score=23.77 Aligned_cols=29 Identities=14% Similarity=0.479 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHhHHHHhhhHHHHHHHHH
Q 034185 42 SRFQTMSDSIVTKIDEMGNRINELEQSIN 70 (102)
Q Consensus 42 ~kFqtMS~~I~~RiDeMg~RIDdLEksI~ 70 (102)
.|+.-|-..++.++-.|.+||-|+|+++.
T Consensus 47 ~kYkfme~~l~a~~~~l~~kIPd~entLe 75 (187)
T KOG3313|consen 47 GKYKFMEASLLAQKRRLKTKIPDIENTLE 75 (187)
T ss_pred HHHHHHHHHHHHHHHHHHhhchHHHHHHH
Confidence 44568899999999999999999999865
No 238
>PRK09343 prefoldin subunit beta; Provisional
Probab=30.35 E-value=2e+02 Score=20.26 Aligned_cols=43 Identities=12% Similarity=0.281 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHH---HHHHhHHHHhhhHHHHHHHHHHHHHhhCC
Q 034185 36 LLQQMQSRFQTMSD---SIVTKIDEMGNRINELEQSINDLRAEMGV 78 (102)
Q Consensus 36 LLqQMQ~kFqtMS~---~I~~RiDeMg~RIDdLEksI~dLm~qaG~ 78 (102)
+...+..|.+.... .+-.+.+.+-.++.++|.+|..++.+.+.
T Consensus 72 ~~~~l~~r~E~ie~~ik~lekq~~~l~~~l~e~q~~l~~ll~~~~~ 117 (121)
T PRK09343 72 VEKELKERKELLELRSRTLEKQEKKLREKLKELQAKINEMLSKYYP 117 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 33444444443332 22345667777888888888888887653
No 239
>smart00709 Zpr1 Duplicated domain in the epidermal growth factor- and elongation factor-1alpha-binding protein Zpr1. Also present in archaeal proteins.
Probab=30.22 E-value=1.1e+02 Score=22.92 Aligned_cols=42 Identities=17% Similarity=0.294 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhH-HHHhhhHHHHHHHHHHHHH
Q 034185 33 VQNLLQQMQSRFQTMSDSIVTKI-DEMGNRINELEQSINDLRA 74 (102)
Q Consensus 33 Vq~LLqQMQ~kFqtMS~~I~~Ri-DeMg~RIDdLEksI~dLm~ 74 (102)
|+++|+++.+..........+-. ++-..|++++=+.|.++++
T Consensus 98 VEGlL~~i~~~L~~~~~~~~~~~~~e~~~k~~~~~~~L~~~~~ 140 (160)
T smart00709 98 VEGLLSRVREVLSQAIQETRDDSDPETKEKIDEFLEKLKELIE 140 (160)
T ss_pred hHHHHHHHHHHHHhhhhhhcccCCHHHHHHHHHHHHHHHHHHc
Confidence 57788877777766532211111 2333455555555555553
No 240
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=30.14 E-value=1.2e+02 Score=29.96 Aligned_cols=54 Identities=22% Similarity=0.438 Sum_probs=34.9
Q ss_pred HHhhcC----CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHh
Q 034185 11 LFWQDG----HDSEDPKQSTADMTVFVQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDLRAE 75 (102)
Q Consensus 11 ~~~~~~----~~s~dpkqs~~dLT~~Vq~LLqQMQ~kFqtMS~~I~~RiDeMg~RIDdLEksI~dLm~q 75 (102)
+|++.| ..+.||.+. .+=|++||+||+.|-..+--+.=+| ||.-|+.+++|++-
T Consensus 945 ~fgk~gt~yDf~~~~p~~a--------re~l~~Lq~k~~~l~k~vn~~~m~m---le~~E~~~~~lk~k 1002 (1174)
T KOG0933|consen 945 LFGKKGTDYDFESYDPHEA--------REELKKLQEKKEKLEKTVNPKNMDM---LERAEEKEAALKTK 1002 (1174)
T ss_pred hhcCCCCccccccCCHhHH--------HHHHHHhhHHHHHHHhhcCHHHHHH---HHHHHHHHHHHHHH
Confidence 477776 345555532 3457889999998887776555555 55566666666653
No 241
>PRK07737 fliD flagellar capping protein; Validated
Probab=30.06 E-value=2.6e+02 Score=24.20 Aligned_cols=21 Identities=5% Similarity=0.414 Sum_probs=11.8
Q ss_pred HHhHHHHhhhHHHHHHHHHHH
Q 034185 52 VTKIDEMGNRINELEQSINDL 72 (102)
Q Consensus 52 ~~RiDeMg~RIDdLEksI~dL 72 (102)
-.+|+.+-+||++||..|.++
T Consensus 447 ~~~i~~l~~~i~~~~~rl~~~ 467 (501)
T PRK07737 447 GKDLNQIETQIDRFQDRLKQI 467 (501)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666666655543
No 242
>PF01420 Methylase_S: Type I restriction modification DNA specificity domain; InterPro: IPR000055 There are four classes of restriction endonucleases: types I, II,III and IV. All types of enzymes recognise specific short DNA sequences and carry out the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. They differ in their recognition sequence, subunit composition, cleavage position, and cofactor requirements [, ], as summarised below: Type I enzymes (3.1.21.3 from EC) cleave at sites remote from recognition site; require both ATP and S-adenosyl-L-methionine to function; multifunctional protein with both restriction and methylase (2.1.1.72 from EC) activities. Type II enzymes (3.1.21.4 from EC) cleave within or at short specific distances from recognition site; most require magnesium; single function (restriction) enzymes independent of methylase. Type III enzymes (3.1.21.5 from EC) cleave at sites a short distance from recognition site; require ATP (but doesn't hydrolyse it); S-adenosyl-L-methionine stimulates reaction but is not required; exists as part of a complex with a modification methylase methylase (2.1.1.72 from EC). Type IV enzymes target methylated DNA. Type I restriction endonucleases are components of prokaryotic DNA restriction-modification mechanisms that protects the organism against invading foreign DNA. Type I enzymes have three different subunits subunits - M (modification), S (specificity) and R (restriction) - that form multifunctional enzymes with restriction (3.1.21.3 from EC), methylase (2.1.1.72 from EC) and ATPase activities [, ]. The S subunit is required for both restriction and modification and is responsible for recognition of the DNA sequence specific for the system. The M subunit is necessary for modification, and the R subunit is required for restriction. These enzymes use S-Adenosyl-L-methionine (AdoMet) as the methyl group donor in the methylation reaction, and have a requirement for ATP. They recognise asymmetric DNA sequences split into two domains of specific sequence, one 3-4 bp long and another 4-5 bp long, separated by a nonspecific spacer 6-8 bp in length. Cleavage occurs a considerable distance from the recognition sites, rarely less than 400 bp away and up to 7000 bp away. Adenosyl residues are methylated, one on each strand of the recognition sequence. These enzymes are widespread in eubacteria and archaea. In enteric bacteria they have been subdivide into four families: types IA, IB, IC and ID. This entry represents the S subunit of type I restriction endonucleases (3.1.21.3 from EC). The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence: when the target site is unmodified, the DNA is cut; when the target site is hemi-methylated, the complex acts as a maintenance methyltransferase to modify the DNA, methylating both strands []. Most of the proteins in this family have two copies of the domain.; GO: 0003677 DNA binding, 0006304 DNA modification; PDB: 1YF2_B 2Y7H_A 2Y7C_A 3OKG_A 1YDX_A.
Probab=29.99 E-value=1.2e+02 Score=19.81 Aligned_cols=25 Identities=24% Similarity=0.259 Sum_probs=16.6
Q ss_pred HHHHHhHHHHhhhHHHHHHHHHHHHH
Q 034185 49 DSIVTKIDEMGNRINELEQSINDLRA 74 (102)
Q Consensus 49 ~~I~~RiDeMg~RIDdLEksI~dLm~ 74 (102)
..|+..++.+-+ .++|++.+.+.+.
T Consensus 142 ~~i~~~l~~~~~-~~~l~~~~~~~l~ 166 (167)
T PF01420_consen 142 QKIVEILDQLDK-KIALEKKIIAELE 166 (167)
T ss_dssp HHHHHHHHHHHH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHhC
Confidence 455666777767 7777777666554
No 243
>PF04906 Tweety: Tweety; InterPro: IPR006990 None of the members of the tweety (tty) family have been functionally characterised. However, they are considered to be transmembrane proteins with five potential membrane-spanning regions. A number of potential functions have been suggested on the basis of homology to the yeast FTR1 and FTH1 iron transporter proteins and the mammalian neurotensin receptors 1 and 2 in that they have a similar hydrophobicity profiles although there is no detectable sequence homology to the tweety-related proteins. It has been proposed that the tweety-related proteins could be involved in transport of iron or other divalent cations or alternatively that they may be membrane-bound receptors [].
Probab=29.90 E-value=3.4e+02 Score=22.87 Aligned_cols=54 Identities=26% Similarity=0.323 Sum_probs=38.3
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HhHHHHhhhHHHHHHHHHHHHHh
Q 034185 19 SEDPKQSTADMTVFVQNLLQQMQSRFQTMSDSIV-------TKIDEMGNRINELEQSINDLRAE 75 (102)
Q Consensus 19 s~dpkqs~~dLT~~Vq~LLqQMQ~kFqtMS~~I~-------~RiDeMg~RIDdLEksI~dLm~q 75 (102)
.++|= .+.|+. .|..|++||..-+.+...+. ..+..+...|+..|+++..|-+-
T Consensus 277 ~~nPF--qq~l~~-~~~al~~~q~~~~~L~~~a~~~fp~~~~~l~~i~~~Ln~~e~~l~~l~al 337 (406)
T PF04906_consen 277 VSNPF--QQRLTS-SQRALSNMQSQVQGLLREAVPLFPTAQEPLLAIQEDLNSTERSLHQLTAL 337 (406)
T ss_pred CCCch--HHHHHH-HHHHHHHHHHHHHHHHHHHHhhCCCccchHHHHHHHHHHHHHHHHHHHhh
Confidence 33554 355554 56778888877776665443 45888999999999999988654
No 244
>PF11328 DUF3130: Protein of unknown function (DUF3130; InterPro: IPR021477 This bacterial family of proteins has no known function.
Probab=29.67 E-value=1.9e+02 Score=20.50 Aligned_cols=39 Identities=15% Similarity=0.370 Sum_probs=31.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhHHH
Q 034185 25 STADMTVFVQNLLQQMQSRFQTMSDSIVTKIDEMGNRINE 64 (102)
Q Consensus 25 s~~dLT~~Vq~LLqQMQ~kFqtMS~~I~~RiDeMg~RIDd 64 (102)
|...+...+..|.+-++ .||.+..+=.+||-.||.-.-.
T Consensus 42 sin~~r~Al~dLv~~Ve-~fq~v~~~DA~RlkkmG~a~~k 80 (90)
T PF11328_consen 42 SINQLRTALIDLVDVVE-NFQQVVKKDASRLKKMGKAFTK 80 (90)
T ss_pred hHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 57778788888777665 4999999999999999975543
No 245
>COG3599 DivIVA Cell division initiation protein [Cell division and chromosome partitioning]
Probab=29.62 E-value=1.8e+02 Score=22.96 Aligned_cols=37 Identities=14% Similarity=0.424 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHH
Q 034185 32 FVQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDL 72 (102)
Q Consensus 32 ~Vq~LLqQMQ~kFqtMS~~I~~RiDeMg~RIDdLEksI~dL 72 (102)
-|+.+|.++.+.+..+- ..+-+.-.||++|++.|...
T Consensus 27 EVdeFLD~V~~dye~~l----~e~~~l~~~i~~L~~~l~~~ 63 (212)
T COG3599 27 EVDEFLDDVIDDYEQLL----DENEDLEDEIDELKEELKEA 63 (212)
T ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHh
Confidence 47777888888886654 33445555666666666544
No 246
>PRK12714 flgK flagellar hook-associated protein FlgK; Provisional
Probab=29.60 E-value=3.4e+02 Score=24.19 Aligned_cols=41 Identities=17% Similarity=0.457 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHhhC
Q 034185 37 LQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDLRAEMG 77 (102)
Q Consensus 37 LqQMQ~kFqtMS~~I~~RiDeMg~RIDdLEksI~dLm~qaG 77 (102)
++.+..+.+.+-..|-..|...-.+|+.|=++|++|-.+..
T Consensus 143 f~~~~~~L~~~~~~~n~~i~~~V~~IN~l~~~IA~LN~~I~ 183 (624)
T PRK12714 143 FKQLNGQMDSLSNEVNSGLTSSVDEVNRLTQQIAKINGTIG 183 (624)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555556666667777777778888888888888877764
No 247
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=29.42 E-value=2.9e+02 Score=22.01 Aligned_cols=15 Identities=13% Similarity=0.441 Sum_probs=8.7
Q ss_pred hhHHHHHHHHHHHHH
Q 034185 60 NRINELEQSINDLRA 74 (102)
Q Consensus 60 ~RIDdLEksI~dLm~ 74 (102)
.||-.||+-+.-+..
T Consensus 121 q~~~~l~~K~D~~L~ 135 (189)
T TIGR02132 121 QDIKSLDKKLDKILE 135 (189)
T ss_pred HHHHHHHHHHHHHHH
Confidence 566666666555544
No 248
>PRK05683 flgK flagellar hook-associated protein FlgK; Validated
Probab=29.34 E-value=3.3e+02 Score=24.81 Aligned_cols=40 Identities=18% Similarity=0.424 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHhh
Q 034185 37 LQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDLRAEM 76 (102)
Q Consensus 37 LqQMQ~kFqtMS~~I~~RiDeMg~RIDdLEksI~dLm~qa 76 (102)
++++..+++.+-..|-..|...-.+|+.|=++|++|-.+.
T Consensus 143 fn~~~~~L~~l~~~vn~qI~~~V~~IN~l~~qIA~LN~qI 182 (676)
T PRK05683 143 FNSLSSQLNQQNSNINSQLSAMTDQVNNLTTSIASYNKQI 182 (676)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556666667777777888888888888888888887765
No 249
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=29.26 E-value=1.6e+02 Score=27.12 Aligned_cols=44 Identities=16% Similarity=0.382 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHhhCCCCC
Q 034185 34 QNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDLRAEMGVEGS 81 (102)
Q Consensus 34 q~LLqQMQ~kFqtMS~~I~~RiDeMg~RIDdLEksI~dLm~qaG~e~~ 81 (102)
..=|++++.+.+++-++...|+.+ ++++...|.+|+...|++-.
T Consensus 159 l~kLeelr~~L~~L~~ek~~Rlek----v~~~~~~I~~l~~~Lg~~~~ 202 (660)
T KOG4302|consen 159 LEKLEELREHLNELQKEKSDRLEK----VLELKEEIKSLCSVLGLDFS 202 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhCCCcc
Confidence 356788888888888888888865 68889999999999998754
No 250
>KOG3335 consensus Predicted coiled-coil protein [General function prediction only]
Probab=29.12 E-value=2.1e+02 Score=22.62 Aligned_cols=22 Identities=27% Similarity=0.531 Sum_probs=11.7
Q ss_pred hHHHHhhhHHHHHHHHHHHHHh
Q 034185 54 KIDEMGNRINELEQSINDLRAE 75 (102)
Q Consensus 54 RiDeMg~RIDdLEksI~dLm~q 75 (102)
++..|-..|+++++-+++|=..
T Consensus 114 ~~~~l~~~i~~~~~~~~~L~~~ 135 (181)
T KOG3335|consen 114 KVEKLENAIAELTKFFSQLHSK 135 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455566666666666433
No 251
>cd07626 BAR_SNX9_like The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 9 and Similar Proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX9, SNX18, SNX33, and similar proteins. SNX9 is localized to plasma membrane endocytic sites and acts primarily in clathrin-mediated endocytosis, while SNX18 is localized to peripheral endosomal structures, and acts in a trafficking pathway that is clathrin-independent but relies on AP-1 and PACS1. BAR domains for
Probab=28.90 E-value=2.3e+02 Score=21.96 Aligned_cols=39 Identities=13% Similarity=0.389 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHhHHH-HhhhHHHHHHHHHHHHHh
Q 034185 37 LQQMQSRFQTMSDSIVTKIDE-MGNRINELEQSINDLRAE 75 (102)
Q Consensus 37 LqQMQ~kFqtMS~~I~~RiDe-Mg~RIDdLEksI~dLm~q 75 (102)
+..++.||..||..|..-|.- ...|+.|+-..|.+.+.+
T Consensus 141 ~~ev~~r~d~IS~~~~aE~~~F~~eRv~Dfk~~m~~yLe~ 180 (199)
T cd07626 141 LEEVKRRTDVISYALLAEINHFHRERVRDFKSMMRNYLQQ 180 (199)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344889999999999877743 467888887777666553
No 252
>PRK07191 flgK flagellar hook-associated protein FlgK; Validated
Probab=28.70 E-value=3.6e+02 Score=22.79 Aligned_cols=41 Identities=22% Similarity=0.254 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHhhC
Q 034185 37 LQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDLRAEMG 77 (102)
Q Consensus 37 LqQMQ~kFqtMS~~I~~RiDeMg~RIDdLEksI~dLm~qaG 77 (102)
++++....+.+-..|-..|+..-.+|+.|=++|++|-.+.-
T Consensus 143 ~n~~~~~l~~~~~~~~~~i~~~V~~iN~ll~~Ia~LN~~I~ 183 (456)
T PRK07191 143 FNNVNNFIVQQKKSIGQQRDATVKQINSLTRSIADYNQKIL 183 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555666667767777777777777777777776653
No 253
>KOG2196 consensus Nuclear porin [Nuclear structure]
Probab=28.58 E-value=1.7e+02 Score=24.16 Aligned_cols=26 Identities=15% Similarity=0.468 Sum_probs=15.4
Q ss_pred HHHHHHHHhHHHHhhhHHHHHHHHHH
Q 034185 46 TMSDSIVTKIDEMGNRINELEQSIND 71 (102)
Q Consensus 46 tMS~~I~~RiDeMg~RIDdLEksI~d 71 (102)
.|...|-++|+-|+.-++++=++|++
T Consensus 178 ~~a~nidsqLk~l~~dL~~ii~~lN~ 203 (254)
T KOG2196|consen 178 KMAENIDSQLKRLSEDLKQIIKSLNT 203 (254)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 35566666666666666665555554
No 254
>KOG3614 consensus Ca2+/Mg2+-permeable cation channels (LTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=28.52 E-value=1.5e+02 Score=29.77 Aligned_cols=49 Identities=20% Similarity=0.334 Sum_probs=34.2
Q ss_pred HHHH-HHHHHHHHHHHHHHHHHH-----------HHHHHHhHHHHhhhHHHHHHHHHHHHH
Q 034185 26 TADM-TVFVQNLLQQMQSRFQTM-----------SDSIVTKIDEMGNRINELEQSINDLRA 74 (102)
Q Consensus 26 ~~dL-T~~Vq~LLqQMQ~kFqtM-----------S~~I~~RiDeMg~RIDdLEksI~dLm~ 74 (102)
.++. ...|++++.+++.+..+= .+.|..|+-||..|+--||.+|+++=.
T Consensus 1116 l~~fEe~~vE~~~r~~~~~~~~s~~Erir~t~~rvd~~~~~l~e~~~r~~~lk~~v~~~~~ 1176 (1381)
T KOG3614|consen 1116 LHTFEEVCVENFLRKREMEQNSSTEERIRRTANRVDLILNRLIELEQREKTLKDSVQNSET 1176 (1381)
T ss_pred hhHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555 678999999998887644 455666667777777777776665543
No 255
>cd01040 globin Globins are heme proteins, which bind and transport oxygen. This family summarizes a diverse set of homologous protein domains, including: (1) tetrameric vertebrate hemoglobins, which are the major protein component of erythrocytes and transport oxygen in the bloodstream, (2) microorganismal flavohemoglobins, which are linked to C-terminal FAD-dependend reductase domains, (3) homodimeric bacterial hemoglobins, such as from Vitreoscilla, (4) plant leghemoglobins (symbiotic hemoglobins, involved in nitrogen metabolism in plant rhizomes), (5) plant non-symbiotic hexacoordinate globins and hexacoordinate globins from bacteria and animals, such as neuroglobin, (6) invertebrate hemoglobins, which may occur in tandem-repeat arrangements, and (7) monomeric myoglobins found in animal muscle tissue.
Probab=28.48 E-value=1e+02 Score=20.00 Aligned_cols=36 Identities=22% Similarity=0.516 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHhhCCC
Q 034185 43 RFQTMSDSIVTKIDEMGNRINELEQSINDLRAEMGVE 79 (102)
Q Consensus 43 kFqtMS~~I~~RiDeMg~RIDdLEksI~dLm~qaG~e 79 (102)
+|..-+..|+..|+.+=..+|+.++ +..++.+.|..
T Consensus 56 ~~~~~~~~~~~~l~~~v~~l~~~~~-l~~~l~~lg~~ 91 (140)
T cd01040 56 KFKAHGKRVLNALDEAIKNLDDLEA-LKALLAKLGRK 91 (140)
T ss_pred HHHHHHHHHHHHHHHHHHhccChHH-HHHHHHHHHHH
Confidence 4555666777777777777777765 56666666543
No 256
>PF00804 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins A and B are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane. Syntaxins are a family of receptors for intracellular transport vesicles. Each target membrane may be identified by a specific member of the syntaxin family []. Members of the syntaxin family [, ] have a size ranging from 30 Kd to 40 Kd; a C-terminal extremity which is highly hydrophobic and anchors the protein on the cytoplasmic surface of cellular membranes; a central, well conserved region, which seems to be in a coiled-coil conformation. ; GO: 0016020 membrane; PDB: 1S94_B 1EZ3_A 3C98_B 1BR0_A 1FIO_A 2XHE_B.
Probab=28.35 E-value=1.5e+02 Score=18.39 Aligned_cols=29 Identities=14% Similarity=0.369 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHhHHHHhhhHHHHHHHHH
Q 034185 42 SRFQTMSDSIVTKIDEMGNRINELEQSIN 70 (102)
Q Consensus 42 ~kFqtMS~~I~~RiDeMg~RIDdLEksI~ 70 (102)
.+.+.+..+|...+-..-.||..|++.+.
T Consensus 45 ~el~~l~~~i~~~~~~~~~~lk~l~~~~~ 73 (103)
T PF00804_consen 45 RELDELTDEIKQLFQKIKKRLKQLSKDNE 73 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33444444444444444455555555433
No 257
>TIGR01803 CM-like chorismate mutase related enzymes. This subfamily includes two enzymes which are variants on the mechanism of chorismate mutase and are likely to have evolved from an ancestral chorismate mutase enzyme. 4-amino-4-deoxy-chorismate mutase produces amino-deoxy-prephenate which is subsequently converted to para-dimethylamino-phenylalanine, a component of the natural product pristinamycin. Isochorismate-pyruvate lyase presumably catalyzes the same type of 2+2+2 cyclo-rearrangement as chorismate mutase, but acting on isochorismate, this results in two broken bonds instead of one broken and one made. The product of this reaction is salicylate (2-hydroxy-benzoate) which is also incorporated into various natural products.
Probab=28.33 E-value=68 Score=20.85 Aligned_cols=21 Identities=5% Similarity=0.281 Sum_probs=15.9
Q ss_pred HHHHhhhHHHHHHHHHHHHHh
Q 034185 55 IDEMGNRINELEQSINDLRAE 75 (102)
Q Consensus 55 iDeMg~RIDdLEksI~dLm~q 75 (102)
++++=++||+|-..|-+|+.+
T Consensus 1 L~~lR~~ID~ID~~lv~Ll~~ 21 (82)
T TIGR01803 1 LADIREAIDRIDLALVQALGR 21 (82)
T ss_pred CHHHHHHHHHHHHHHHHHHHH
Confidence 356667888888888888765
No 258
>PLN02677 mevalonate kinase
Probab=28.30 E-value=2.9e+02 Score=23.22 Aligned_cols=21 Identities=10% Similarity=0.006 Sum_probs=14.6
Q ss_pred CCCCCCCHHHHHHHHHHHHHHH
Q 034185 19 SEDPKQSTADMTVFVQNLLQQM 40 (102)
Q Consensus 19 s~dpkqs~~dLT~~Vq~LLqQM 40 (102)
+..|. ++.++-+-|..+.++-
T Consensus 237 Tgv~~-sT~~lV~~V~~~~~~~ 257 (387)
T PLN02677 237 TRVGR-NTKALVAGVSERALRH 257 (387)
T ss_pred CCCCC-cHHHHHHHHHHHHHhC
Confidence 34445 8889988887776653
No 259
>PF12205 GIT1_C: G protein-coupled receptor kinase-interacting protein 1 C term; InterPro: IPR022018 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF01412 from PFAM, PF00023 from PFAM, PF08518 from PFAM. GIT1 plays an important role in cell adhesion, motility, cytoskeletal remodeling and membrane trafficking. To perform this function, it localises p21-activated kinase (PAK) and PAK-interactive exchange factor to focal adhesions. Its activation is regulated by interaction between its paxillin-binding C-terminal and the LD motifs of paxillin. The C-terminal folds into a four helix bundle. ; PDB: 2JX0_A.
Probab=28.27 E-value=2.4e+02 Score=20.56 Aligned_cols=48 Identities=25% Similarity=0.414 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHHHhHHHHhh------hHHHHHHHHHHHHH
Q 034185 27 ADMTVFVQNLLQQMQ----SRFQTMSDSIVTKIDEMGN------RINELEQSINDLRA 74 (102)
Q Consensus 27 ~dLT~~Vq~LLqQMQ----~kFqtMS~~I~~RiDeMg~------RIDdLEksI~dLm~ 74 (102)
+.+|.-++.||.-+| ++|-..++.|-.-+.+|.+ +-..+..+|..|..
T Consensus 19 E~vTk~IqeLl~aAQ~~~~~s~~pcae~I~~aV~~m~~LfP~~~~~e~vr~~L~~L~~ 76 (123)
T PF12205_consen 19 EQVTKRIQELLRAAQEGRHDSFAPCAERIRSAVTEMAALFPKDPRSETVRSSLRQLTS 76 (123)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHHTS-SSB--HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHhCCCccCChHHHHHHHHHHH
Confidence 445777788888887 5688888888888888853 33444444544443
No 260
>PF05130 FlgN: FlgN protein; InterPro: IPR007809 Flagella synthesis protein FlgN is an export chaperone involved in flagellar synthesis []. This entry represents a FlgN-like domain, consisting of a 4 long helices bundle, where the last helix is shorter than the three others.; GO: 0009296 flagellum assembly, 0019861 flagellum; PDB: 2FUP_A 3OPC_A.
Probab=28.19 E-value=1.8e+02 Score=19.00 Aligned_cols=52 Identities=23% Similarity=0.424 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHHHhHHHHhhhHHHHHHHHHHHHHhhCCC
Q 034185 28 DMTVFVQNLLQQMQSRFQTMS-------DSIVTKIDEMGNRINELEQSINDLRAEMGVE 79 (102)
Q Consensus 28 dLT~~Vq~LLqQMQ~kFqtMS-------~~I~~RiDeMg~RIDdLEksI~dLm~qaG~e 79 (102)
+.....+.|+.-++...+.+. ..++.+......+|..+|+....+....|..
T Consensus 12 ~~~~~~~~L~~ll~~e~~~l~~~d~~~l~~~~~~k~~l~~~l~~le~~r~~~~~~~~~~ 70 (143)
T PF05130_consen 12 EQIELLQELLELLEEEREALISGDIDELEELVEEKQELLEELRELEKQRQQLLAKLGAE 70 (143)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 344455556666666555333 4566777888899999999999999998876
No 261
>PF14282 FlxA: FlxA-like protein
Probab=28.18 E-value=2e+02 Score=19.76 Aligned_cols=54 Identities=19% Similarity=0.304 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------HHHHhHHHHhhhHHHHHHHHHHHHHhhCCCC
Q 034185 27 ADMTVFVQNLLQQMQSRFQTMSD-------SIVTKIDEMGNRINELEQSINDLRAEMGVEG 80 (102)
Q Consensus 27 ~dLT~~Vq~LLqQMQ~kFqtMS~-------~I~~RiDeMg~RIDdLEksI~dLm~qaG~e~ 80 (102)
...+.-++.=+..++.+.+.+.+ +--.++..+-..|..||..|..|..+..-..
T Consensus 18 ~~~I~~L~~Qi~~Lq~ql~~l~~~~~~~~e~k~~q~q~Lq~QI~~LqaQI~qlq~q~~~~~ 78 (106)
T PF14282_consen 18 DSQIEQLQKQIKQLQEQLQELSQDSDLDAEQKQQQIQLLQAQIQQLQAQIAQLQSQQAEQQ 78 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444445555554444 4456778888899999999999988776554
No 262
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=27.94 E-value=2e+02 Score=19.54 Aligned_cols=28 Identities=32% Similarity=0.440 Sum_probs=19.2
Q ss_pred HHHHHHHHHhHHHHhhhHHHHHHHHHHH
Q 034185 45 QTMSDSIVTKIDEMGNRINELEQSINDL 72 (102)
Q Consensus 45 qtMS~~I~~RiDeMg~RIDdLEksI~dL 72 (102)
+..-+.+..++.++-.+|.++++++..|
T Consensus 12 ~~~i~~l~~~i~~l~~~i~e~~~~~~~L 39 (126)
T TIGR00293 12 QQQVESLQAQIAALRALIAELETAIETL 39 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334455567777888888888887666
No 263
>cd07307 BAR The Bin/Amphiphysin/Rvs (BAR) domain, a dimerization module that binds membranes and detects membrane curvature. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. Mutations in BAR containing proteins have been linked to diseases and their inactivation in cells leads to altered membrane dynamics. A BAR domain with an additional N-terminal amphipathic helix (an N-BAR) can drive membrane curvature. These N-BAR domains are found in amphiphysins and endophilins, among others. BAR domains are also frequently found alongside domains that determine lipid specificity, such as the Pleckstrin Homology (PH) and Phox Homology (PX) domains which are present in beta centaurins (ACAPs and ASAPs) and sorting nexins, respectively. A FES-CIP4 Homology (FCH) domain together with a coiled coil region is called the F-
Probab=27.92 E-value=1.9e+02 Score=19.26 Aligned_cols=41 Identities=15% Similarity=0.333 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHhhhHHHHHH
Q 034185 27 ADMTVFVQNLLQQMQSRFQTMSDSIV-TKIDEMGNRINELEQ 67 (102)
Q Consensus 27 ~dLT~~Vq~LLqQMQ~kFqtMS~~I~-~RiDeMg~RIDdLEk 67 (102)
.++..+.+.+.++++..|-.-....+ +.+..+-..+..+++
T Consensus 64 ~~l~~~~~~~~~~~~~~v~~pL~~~~~~~~~~~~~~~k~~~~ 105 (194)
T cd07307 64 KELEEFRDQLEQKLENKVIEPLKEYLKKDLKEIKKRRKKLDK 105 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666667777776644334333 444444444444444
No 264
>TIGR01013 2a58 Phosphate:Na+ Symporter (PNaS) Family.
Probab=27.90 E-value=1.7e+02 Score=24.47 Aligned_cols=47 Identities=11% Similarity=-0.031 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHH
Q 034185 26 TADMTVFVQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDL 72 (102)
Q Consensus 26 ~~dLT~~Vq~LLqQMQ~kFqtMS~~I~~RiDeMg~RIDdLEksI~dL 72 (102)
..++-+.|...++....=|..-......|+-+...+||+||+.+.+-
T Consensus 380 l~~~~~~v~~~f~~a~~~l~~~~~~~a~~lv~~~~~i~~l~~~~~~~ 426 (456)
T TIGR01013 380 RWFLIVYLVLNFLLAPSLLFGLDLNLARRLVGVKIPFRILELFSSLL 426 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccHHHHHHHHHHHH
Confidence 44566666667777777777667777888888899999999887664
No 265
>PLN02867 Probable galacturonosyltransferase
Probab=27.83 E-value=2.3e+02 Score=25.63 Aligned_cols=74 Identities=23% Similarity=0.346 Sum_probs=46.2
Q ss_pred hhchhhhHHhhcCCCCC-----------------CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhHHHHH
Q 034185 4 LICSNWLLFWQDGHDSE-----------------DPKQSTADMTVFVQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELE 66 (102)
Q Consensus 4 ~~~~~~~~~~~~~~~s~-----------------dpkqs~~dLT~~Vq~LLqQMQ~kFqtMS~~I~~RiDeMg~RIDdLE 66 (102)
+-|..|-+||. +.+|. ++..+..+.....+.+|..|...+... ..+..|+-.| +-.+|
T Consensus 77 ~~c~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~-~~~~~kl~am---~~~~e 151 (535)
T PLN02867 77 LDCIGLRLFGG-SDTSLKLREELTRALVEAKEQDDGGRGTKGSTESFNDLVKEMTSNRQDI-KAFAFRTKAM---LLKME 151 (535)
T ss_pred ccccchhhhcC-CCchhHHHHHHHHHHHHhhhccccCcchhhhhhHHHHHHHHHHhccchH-HHHHHHHHHH---HHHHH
Confidence 34788888883 32222 222366777888888888888877663 4566677776 55666
Q ss_pred HHHHHHHHh------hCCCCCC
Q 034185 67 QSINDLRAE------MGVEGSP 82 (102)
Q Consensus 67 ksI~dLm~q------aG~e~~p 82 (102)
+.+.....| .++.+.|
T Consensus 152 ~~~~~~~~~~~~~~~laa~t~P 173 (535)
T PLN02867 152 RKVQSARQRESIYWHLASHGIP 173 (535)
T ss_pred HHHHHHHHHHHHHHHHHhhhcC
Confidence 666655544 4555544
No 266
>PRK08147 flgK flagellar hook-associated protein FlgK; Validated
Probab=27.74 E-value=4e+02 Score=22.96 Aligned_cols=41 Identities=15% Similarity=0.279 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHhhC
Q 034185 37 LQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDLRAEMG 77 (102)
Q Consensus 37 LqQMQ~kFqtMS~~I~~RiDeMg~RIDdLEksI~dLm~qaG 77 (102)
++++...++.+-..|-.+|+..-.+|+.|=++|++|-.+..
T Consensus 144 ~n~~~~~L~~~~~~~~~~i~~~V~~iN~l~~~Ia~LN~~I~ 184 (547)
T PRK08147 144 FKTTDQYLRDQDKGVNTAIGSSVDQINNYAKQIASLNDQIT 184 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455566666677777888888888888888888877753
No 267
>PF04568 IATP: Mitochondrial ATPase inhibitor, IATP; InterPro: IPR007648 ATP synthase inhibitor prevents the enzyme from switching to ATP hydrolysis during collapse of the electrochemical gradient, for example during oxygen deprivation [] ATP synthase inhibitor forms a one to one complex with the F1 ATPase, possibly by binding at the alpha-beta interface. It is thought to inhibit ATP synthesis by preventing the release of ATP []. The minimum inhibitory region for bovine inhibitor (P01096 from SWISSPROT) is from residues 39 to 72 []. The inhibitor has two oligomeric states, dimer (the active state) and tetramer. At low pH , the inhibitor forms a dimer via antiparallel coiled coil interactions between the C-terminal regions of two monomers. At high pH, the inhibitor forms tetramers and higher oligomers by coiled coil interactions involving the N terminus and inhibitory region, thus preventing the inhibitory activity []. ; GO: 0004857 enzyme inhibitor activity, 0045980 negative regulation of nucleotide metabolic process, 0005739 mitochondrion; PDB: 1GMJ_B 1OHH_H 1HF9_B 2V7Q_J.
Probab=27.54 E-value=1.7e+02 Score=20.67 Aligned_cols=30 Identities=20% Similarity=0.493 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHhHHHHhhhHHHHHHHHH
Q 034185 41 QSRFQTMSDSIVTKIDEMGNRINELEQSIN 70 (102)
Q Consensus 41 Q~kFqtMS~~I~~RiDeMg~RIDdLEksI~ 70 (102)
+.++..|=.++...+..--..||+||+.|.
T Consensus 71 kEqL~~Lk~kl~~e~~~~~k~i~~le~~I~ 100 (100)
T PF04568_consen 71 KEQLKKLKEKLKEEIEHHRKEIDELEKHIE 100 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 366778888888888889999999999884
No 268
>PF00489 IL6: Interleukin-6/G-CSF/MGF family; InterPro: IPR003573 Interleukin-6 (IL6), also refered to as B-cell stimulatory factor-2 (BSF-2) and interferon beta-2, is a cytokine involved in a wide variety of biological functions []. It plays an essential role in the final differentiation of B-cells into IG-secreting cells, as well as inducing myeloma/plasmacytoma growth, nerve cell differentiation and, in hepatocytes, acute phase reactants [, ]. A number of other cytokines may be grouped with IL6 on the basis of sequence similarity [, , ]: these include granulocyte colony-stimulating factor (GCSF) and myelomonocytic growth factor (MGF). GCSF acts in hematopoiesis by affecting the production, differentiation and function of 2 related white cell groups in the blood []. MGF also acts in hematopoiesis, stimulating proliferation and colony formation of normal and transformed avian cells of the myeloid lineage. Cytokines of the IL6/GCSF/MGF family are glycoproteins of about 170 to 180 amino acid residues that contains four conserved cysteine residues involved in two disulphide bonds []. They have a compact, globular fold (similar to other interleukins), stabilised by the 2 disulphide bonds. One half of the structure is dominated by a 4 alpha-helix bundle with a left-handed twist []: the helices are anti-parallel, with 2 overhand connections, which fall into a 2-stranded anti-parallel beta-sheet. The fourth alpha-helix is important to the biological activity of the molecule []. It has been said [] that this family can be extended by the adjunction of LIF and OSM (see the relevant entry IPR001581 from INTERPRO) which seem to be structurally related.; GO: 0005125 cytokine activity, 0006955 immune response, 0005576 extracellular region; PDB: 1P9M_B 2IL6_A 1IL6_A 1ALU_A 3QWR_B 3DUH_C 3D85_C 3D87_C 1BGC_A 2L3Y_A ....
Probab=27.46 E-value=61 Score=23.80 Aligned_cols=47 Identities=21% Similarity=0.349 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHhhCCCCCCCCC
Q 034185 35 NLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDLRAEMGVEGSPSPL 85 (102)
Q Consensus 35 ~LLqQMQ~kFqtMS~~I~~RiDeMg~RIDdLEksI~dLm~qaG~e~~p~~s 85 (102)
.+|+-++++|..-. .+++++-.-+.+|=..|..-|...+....+.|+
T Consensus 68 ~lL~~l~~~~~~~~----~~v~~Lq~~~~~L~~~i~~~~~~~~~~~~~~P~ 114 (154)
T PF00489_consen 68 ILLKYLQGEFPGLK----ENVESLQLDTKDLAQTIKQKMKNPDEVTTPSPT 114 (154)
T ss_dssp HHHHHTTTSSTTTH----HHHHHHHHHHHHHHHHHHHHHHHHSTTTTSSHC
T ss_pred HHHHHHHhhCccch----hHHHHHHHHHHHHHHHHHHHhhccccccCCCCc
Confidence 34555555554422 445666666667777777777776666666554
No 269
>PF11172 DUF2959: Protein of unknown function (DUF2959); InterPro: IPR021342 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=27.35 E-value=1.8e+02 Score=23.16 Aligned_cols=36 Identities=28% Similarity=0.446 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHH
Q 034185 37 LQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDL 72 (102)
Q Consensus 37 LqQMQ~kFqtMS~~I~~RiDeMg~RIDdLEksI~dL 72 (102)
+..+++.|..+...|-.-|.+|-.-|.+-.+=|..|
T Consensus 165 I~sL~~e~~~~~~di~~Li~~m~~sI~ead~FI~~l 200 (201)
T PF11172_consen 165 IASLQGEFSSIESDISQLIKEMERSIAEADAFIASL 200 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 456788899999888888888888888877766554
No 270
>cd07623 BAR_SNX1_2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 1 and 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX1, SNX2, and similar proteins. SNX1 and SNX2 are components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), wh
Probab=27.27 E-value=2.8e+02 Score=21.09 Aligned_cols=50 Identities=16% Similarity=0.289 Sum_probs=35.3
Q ss_pred HHHHHHHH---HHHHHHHHHHHHHHHHHHHHhHHHH-hhhHHHHHHHHHHHHHh
Q 034185 26 TADMTVFV---QNLLQQMQSRFQTMSDSIVTKIDEM-GNRINELEQSINDLRAE 75 (102)
Q Consensus 26 ~~dLT~~V---q~LLqQMQ~kFqtMS~~I~~RiDeM-g~RIDdLEksI~dLm~q 75 (102)
.+++..=| +.-.++.+.+|+.||..|-.-|... ..|+.|+-.+|...+..
T Consensus 151 ~~~~~~ev~~~e~~~~~a~~~fe~is~~~k~El~rF~~erv~dfk~~l~~~le~ 204 (224)
T cd07623 151 LDQAQQEIKEWEAKVDRGQKEFEEISKTIKKEIERFEKNRVKDFKDIIIKYLES 204 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444 4456788899999999998776655 67788877777766543
No 271
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=27.21 E-value=1.1e+02 Score=25.09 Aligned_cols=8 Identities=25% Similarity=0.808 Sum_probs=3.0
Q ss_pred HHHHHHHH
Q 034185 37 LQQMQSRF 44 (102)
Q Consensus 37 LqQMQ~kF 44 (102)
|..|+.+|
T Consensus 359 L~~ve~~~ 366 (388)
T PF04912_consen 359 LNKVEEKF 366 (388)
T ss_pred HHHHHHHH
Confidence 33333333
No 272
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=27.13 E-value=3.8e+02 Score=23.75 Aligned_cols=23 Identities=17% Similarity=0.313 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 034185 30 TVFVQNLLQQMQSRFQTMSDSIV 52 (102)
Q Consensus 30 T~~Vq~LLqQMQ~kFqtMS~~I~ 52 (102)
-+.++..=++|...|+.++..|+
T Consensus 101 ~~~l~~~~~~L~~~F~~LA~~il 123 (475)
T PRK10361 101 IRQMINSEQRLSEQFENLANRIF 123 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666677778888888877
No 273
>COG3416 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.08 E-value=2e+02 Score=23.62 Aligned_cols=22 Identities=32% Similarity=0.457 Sum_probs=18.0
Q ss_pred hHHHHhhhHHHHHHHHHHHHHh
Q 034185 54 KIDEMGNRINELEQSINDLRAE 75 (102)
Q Consensus 54 RiDeMg~RIDdLEksI~dLm~q 75 (102)
-|.-|+.||.+||+.|.-|=..
T Consensus 56 ALk~a~~~i~eLe~ri~~lq~~ 77 (233)
T COG3416 56 ALKKASTQIKELEKRIAILQAG 77 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHhcc
Confidence 3567889999999999988663
No 274
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=26.96 E-value=2.2e+02 Score=25.34 Aligned_cols=24 Identities=8% Similarity=0.117 Sum_probs=16.5
Q ss_pred HHHhhhHHHHHHHHHHHHHhhCCC
Q 034185 56 DEMGNRINELEQSINDLRAEMGVE 79 (102)
Q Consensus 56 DeMg~RIDdLEksI~dLm~qaG~e 79 (102)
+.+-.||+.||+.+.......+..
T Consensus 370 ~~~~~~~~~le~~~~~~~~~~~~~ 393 (584)
T PRK14952 370 SALLQRVERIETRLDMSIPANLLH 393 (584)
T ss_pred HHHHHHHHHHHHHHhhcccccCCC
Confidence 456789999999887654443433
No 275
>PF14005 YpjP: YpjP-like protein
Probab=26.95 E-value=2.8e+02 Score=20.94 Aligned_cols=42 Identities=19% Similarity=0.320 Sum_probs=29.4
Q ss_pred HHHHHHHHHHhH-HHHhhh-HHHHHHHHHHHHHhhCCCCCCCCC
Q 034185 44 FQTMSDSIVTKI-DEMGNR-INELEQSINDLRAEMGVEGSPSPL 85 (102)
Q Consensus 44 FqtMS~~I~~Ri-DeMg~R-IDdLEksI~dLm~qaG~e~~p~~s 85 (102)
+..|...|--+| ||.-++ +..+|.-|.++..+.+.+..+.+.
T Consensus 21 ~~KfG~kI~p~Iedef~~~IlPkie~~I~~~~~~~~~~~~~~l~ 64 (136)
T PF14005_consen 21 YKKFGSKIGPVIEDEFREEILPKIEEAIEDLLEQYPEDDLQGLE 64 (136)
T ss_pred HHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHhCChhhccccc
Confidence 345566676777 444444 478999999999999988555444
No 276
>COG2021 MET2 Homoserine acetyltransferase [Amino acid transport and metabolism]
Probab=26.91 E-value=58 Score=27.97 Aligned_cols=39 Identities=31% Similarity=0.382 Sum_probs=26.3
Q ss_pred eehhchhhhH--HhhcCCCCCCCC----------CCHHHHHHHHHHHHHHH
Q 034185 2 FCLICSNWLL--FWQDGHDSEDPK----------QSTADMTVFVQNLLQQM 40 (102)
Q Consensus 2 ~~~~~~~~~~--~~~~~~~s~dpk----------qs~~dLT~~Vq~LLqQM 40 (102)
||+||+|-|- ++-+|..|.+|. -+..|+.++=.-||+.|
T Consensus 93 ~fvIc~NvlG~c~GStgP~s~~p~g~~yg~~FP~~ti~D~V~aq~~ll~~L 143 (368)
T COG2021 93 FFVICTNVLGGCKGSTGPSSINPGGKPYGSDFPVITIRDMVRAQRLLLDAL 143 (368)
T ss_pred eEEEEecCCCCCCCCCCCCCcCCCCCccccCCCcccHHHHHHHHHHHHHhc
Confidence 8999999874 556666666655 35567766666665554
No 277
>PF04888 SseC: Secretion system effector C (SseC) like family ; InterPro: IPR006972 SseC is a secreted protein that forms a complex together with SecB and SecD on the surface of Salmonella typhimurium. All these proteins are secreted by the type III secretion system []. Many mucosal pathogens use type III secretion systems for the injection of effector proteins into target cells. SecB, SseC and SecD are inserted into the target cell membrane. where they form a small pore or translocon [, ]. In addition to SseC, this family includes the bacterial secreted proteins PopB, PepB, YopB and EspD which are thought to be directly involved in pore formation, and type III secretion system translocon.; GO: 0009405 pathogenesis
Probab=26.84 E-value=2.8e+02 Score=21.69 Aligned_cols=40 Identities=18% Similarity=0.372 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHhh
Q 034185 37 LQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDLRAEM 76 (102)
Q Consensus 37 LqQMQ~kFqtMS~~I~~RiDeMg~RIDdLEksI~dLm~qa 76 (102)
++.+.+.++.+.++....+-++..+.+++=+.+.+.+++.
T Consensus 256 ~~a~~~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~~~ 295 (306)
T PF04888_consen 256 LQAMMEQLQSIMDQAIKQFKKLMESFQQIMKSISQIIQQS 295 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555555555555455555555555554443
No 278
>PRK06285 chorismate mutase; Provisional
Probab=26.67 E-value=94 Score=20.88 Aligned_cols=24 Identities=38% Similarity=0.656 Sum_probs=16.0
Q ss_pred HHhHHHHhhhHHHHHHHHHHHHHh
Q 034185 52 VTKIDEMGNRINELEQSINDLRAE 75 (102)
Q Consensus 52 ~~RiDeMg~RIDdLEksI~dLm~q 75 (102)
-..|+++=..||++...|-+|+.+
T Consensus 6 ~~~L~elR~~ID~ID~~iv~Ll~~ 29 (96)
T PRK06285 6 EKRLNEIRKRIDEIDEQIIDLIAE 29 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667777777777777766554
No 279
>PF11101 DUF2884: Protein of unknown function (DUF2884); InterPro: IPR021307 Some members in this bacterial family of proteins are annotated as YggN which currently has no known function.
Probab=26.52 E-value=3.1e+02 Score=21.27 Aligned_cols=48 Identities=19% Similarity=0.365 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHH-----HhHHHHhhhHHHHHHHHHHHHH
Q 034185 27 ADMTVFVQNLLQQ-MQSRFQTMSDSIV-----TKIDEMGNRINELEQSINDLRA 74 (102)
Q Consensus 27 ~dLT~~Vq~LLqQ-MQ~kFqtMS~~I~-----~RiDeMg~RIDdLEksI~dLm~ 74 (102)
+|+-+.++.+.++ |-.=|..++.++. .||++|+.|++.|-..|..=|.
T Consensus 135 ~e~e~~~e~lv~~s~g~i~~~l~~~m~~~~G~~~l~~~~~~m~~l~~~ie~~~~ 188 (229)
T PF11101_consen 135 QEFEQAIEQLVQESMGSILQALGNEMGSSEGDQNLQAFEQRMEGLQQQIEQEME 188 (229)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444433 3334677777774 4577777777777766665544
No 280
>smart00190 IL4_13 Interleukins 4 and 13. Interleukins-4 and -13 are cytokines involved in inflammatory and immune responses. IL-4 stimulates B and T cells.
Probab=26.52 E-value=96 Score=23.38 Aligned_cols=18 Identities=17% Similarity=0.473 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 034185 28 DMTVFVQNLLQQMQSRFQ 45 (102)
Q Consensus 28 dLT~~Vq~LLqQMQ~kFq 45 (102)
+|..|++.|+.-||.||-
T Consensus 117 tl~dFL~~Lk~~m~~ky~ 134 (138)
T smart00190 117 TLADFLERLKSIMREKYS 134 (138)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 999999999999999995
No 281
>cd07666 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 7. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX7 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=26.19 E-value=1.2e+02 Score=24.20 Aligned_cols=38 Identities=26% Similarity=0.435 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHH------HhHHHHhhhHHHHHHHHHHH
Q 034185 35 NLLQQMQSRFQTMSDSIV------TKIDEMGNRINELEQSINDL 72 (102)
Q Consensus 35 ~LLqQMQ~kFqtMS~~I~------~RiDeMg~RIDdLEksI~dL 72 (102)
++|++|.+.|-++...+- .|-.||..+||.|+..|+-+
T Consensus 30 g~~~~~~d~~~~~~s~~~~v~~~~~eF~Emkey~d~L~~~L~~i 73 (243)
T cd07666 30 GLLSRMGQTVKAVASSVRGVKNRPEEFTEMNEYVEAFSQKINVL 73 (243)
T ss_pred hhhhhhHHHHHHHHHhccccCCCCHHHHHHHHHHHHHHHHhhhh
Confidence 466666666666665542 24466666666666665543
No 282
>PRK04654 sec-independent translocase; Provisional
Probab=26.11 E-value=3.5e+02 Score=21.81 Aligned_cols=42 Identities=7% Similarity=0.310 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--hHHHHhhhHHHHHHHHH
Q 034185 29 MTVFVQNLLQQMQSRFQTMSDSIVT--KIDEMGNRINELEQSIN 70 (102)
Q Consensus 29 LT~~Vq~LLqQMQ~kFqtMS~~I~~--RiDeMg~RIDdLEksI~ 70 (102)
+...+-..+.+++.-|..+-++|.. +++|+-+.+.++++.|.
T Consensus 28 ~aRtlGk~irk~R~~~~~vk~El~~El~~~ELrk~l~~~~~~i~ 71 (214)
T PRK04654 28 AARFAGLWVRRARMQWDSVKQELERELEAEELKRSLQDVQASLR 71 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 3334444455555555555555543 23455444444444333
No 283
>PHA03332 membrane glycoprotein; Provisional
Probab=26.10 E-value=1.5e+02 Score=29.57 Aligned_cols=39 Identities=18% Similarity=0.239 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhHHH
Q 034185 26 TADMTVFVQNLLQQMQSRFQTMSDSIVTKIDEMGNRINE 64 (102)
Q Consensus 26 ~~dLT~~Vq~LLqQMQ~kFqtMS~~I~~RiDeMg~RIDd 64 (102)
..+|+.-|..=+-++-++|.++..+.-.++++..+||+.
T Consensus 939 Is~Led~VN~r~~~v~~~intLA~ql~~~~~~~N~~ie~ 977 (1328)
T PHA03332 939 VSDLEDQVNLRFLAVATNFNTLATQLKELGTTTNERIEE 977 (1328)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHH
Confidence 344555555445555555555555555555555555543
No 284
>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Probab=26.08 E-value=3.5e+02 Score=24.22 Aligned_cols=19 Identities=11% Similarity=0.468 Sum_probs=8.0
Q ss_pred HhHHHHhhhHHHHHHHHHH
Q 034185 53 TKIDEMGNRINELEQSIND 71 (102)
Q Consensus 53 ~RiDeMg~RIDdLEksI~d 71 (102)
..+.+...|++.||..+++
T Consensus 378 ~~~~~~~~~l~~le~~l~~ 396 (656)
T PRK06975 378 ASVHQLDSQFAQLDGKLAD 396 (656)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444333
No 285
>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits. Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.
Probab=26.07 E-value=2e+02 Score=19.02 Aligned_cols=46 Identities=17% Similarity=0.461 Sum_probs=28.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHH
Q 034185 25 STADMTVFVQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDLRA 74 (102)
Q Consensus 25 s~~dLT~~Vq~LLqQMQ~kFqtMS~~I~~RiDeMg~RIDdLEksI~dLm~ 74 (102)
+.++-..|++.=+..++...+.+. ..+.+...+|..++..|+.+..
T Consensus 74 s~~eA~~~l~~r~~~l~~~~~~l~----~~~~~~~~~~~~~~~~l~~~~~ 119 (120)
T PF02996_consen 74 SLEEAIEFLKKRIKELEEQLEKLE----KELAELQAQIEQLEQTLQQLYQ 119 (120)
T ss_dssp EHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhc
Confidence 455666666665665555554433 5566677777777777776654
No 286
>PRK08032 fliD flagellar capping protein; Reviewed
Probab=25.87 E-value=3.3e+02 Score=23.16 Aligned_cols=20 Identities=5% Similarity=0.207 Sum_probs=8.8
Q ss_pred HHHHHhHHHHhhhHHHHHHH
Q 034185 49 DSIVTKIDEMGNRINELEQS 68 (102)
Q Consensus 49 ~~I~~RiDeMg~RIDdLEks 68 (102)
..|-.+|+++-.||+.+|+.
T Consensus 416 ~~l~~~i~~~~~rl~~~e~r 435 (462)
T PRK08032 416 KKLTKQYNAVSDSIDATIAR 435 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444443
No 287
>PF01402 RHH_1: Ribbon-helix-helix protein, copG family; InterPro: IPR002145 CopG, also known as RepA, is responsible for the regulation of plasmid copy number. It binds to the repAB promoter and controls synthesis of the plasmid replication initiator protein RepB. Many bacterial transcription regulation proteins bind DNA through a 'helix-turn-helix' motif, nevertheless CopG displays a fully defined HTH-motif structure that is involved not in DNA-binding, but in the maintenance of the intrinsic dimeric functional structure and cooperativity [, ].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2BJ3_B 2BJ8_A 2BJ1_A 2BJ9_A 2BJ7_B 1EA4_L 2CPG_C 1B01_B 2BA3_A 2K9I_B ....
Probab=25.79 E-value=31 Score=18.97 Aligned_cols=26 Identities=23% Similarity=0.523 Sum_probs=15.2
Q ss_pred HHHHHHHhHHHHhhhHHHHHHHHHHHHHh
Q 034185 47 MSDSIVTKIDEMGNRINELEQSINDLRAE 75 (102)
Q Consensus 47 MS~~I~~RiDeMg~RIDdLEksI~dLm~q 75 (102)
++++...+||++..+-+ .|.++++.+
T Consensus 6 l~~~~~~~l~~~a~~~g---~s~s~~ir~ 31 (39)
T PF01402_consen 6 LPDELYERLDELAKELG---RSRSELIRE 31 (39)
T ss_dssp EEHHHHHHHHHHHHHHT---SSHHHHHHH
T ss_pred eCHHHHHHHHHHHHHHC---cCHHHHHHH
Confidence 34566677777766544 555555544
No 288
>PRK13936 phosphoheptose isomerase; Provisional
Probab=25.65 E-value=2.6e+02 Score=20.66 Aligned_cols=42 Identities=12% Similarity=0.203 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHhhC
Q 034185 36 LLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDLRAEMG 77 (102)
Q Consensus 36 LLqQMQ~kFqtMS~~I~~RiDeMg~RIDdLEksI~dLm~qaG 77 (102)
++++.++.|...-..+....+.....|.+.=+-+.+++.++|
T Consensus 3 ~~~~~~~~~~~~~~~l~~~~~~~~~~i~~a~~~~~~~l~~a~ 44 (197)
T PRK13936 3 LQSRIRQHFEDSIDTKQQAMEVLAPPIAQAVELMVQALLNEG 44 (197)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHCCC
Confidence 455566666555444444444444444444444444444443
No 289
>PRK06945 flgK flagellar hook-associated protein FlgK; Validated
Probab=25.62 E-value=4.3e+02 Score=23.83 Aligned_cols=40 Identities=15% Similarity=0.324 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHhh
Q 034185 37 LQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDLRAEM 76 (102)
Q Consensus 37 LqQMQ~kFqtMS~~I~~RiDeMg~RIDdLEksI~dLm~qa 76 (102)
++++..+++.+-..+-.+|...-.+|+.|=++|++|-.+.
T Consensus 144 fn~~~~~L~~~~~~~n~~I~~~V~~IN~l~~qIA~LN~~I 183 (651)
T PRK06945 144 FNAAGQQLDQLRQSVNTQLTSSVTQINSYTKQIAQLNDQI 183 (651)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666777777788888888888888888887665
No 290
>PRK11115 transcriptional regulator PhoU; Provisional
Probab=25.54 E-value=2.8e+02 Score=20.38 Aligned_cols=46 Identities=13% Similarity=0.185 Sum_probs=36.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHH
Q 034185 25 STADMTVFVQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSIN 70 (102)
Q Consensus 25 s~~dLT~~Vq~LLqQMQ~kFqtMS~~I~~RiDeMg~RIDdLEksI~ 70 (102)
...+|...|...+....+-|.+.......++-++-.+||++.+.+.
T Consensus 127 ~l~~l~~~v~~~l~~a~~a~~~~d~~~a~~i~~~d~~Id~~~~~~~ 172 (236)
T PRK11115 127 SLESLGRHTIQMLHDVLDAFARMDLDEAVRIYREDKKVDQEYEGIV 172 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777777778888888888888888889999999998776544
No 291
>KOG4496 consensus Predicted coiled-coil protein [Function unknown]
Probab=25.51 E-value=3.2e+02 Score=21.61 Aligned_cols=45 Identities=18% Similarity=0.389 Sum_probs=26.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHH
Q 034185 25 STADMTVFVQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDLR 73 (102)
Q Consensus 25 s~~dLT~~Vq~LLqQMQ~kFqtMS~~I~~RiDeMg~RIDdLEksI~dLm 73 (102)
+..=+..||-. +-||-++|.+....|+ .+.+-|||..|+.++=|=
T Consensus 24 Taaf~N~fimh-~tefLN~F~n~cEd~L---ad~elridq~d~kLnild 68 (194)
T KOG4496|consen 24 TAAFFNCFIMH-MTEFLNNFGNKCEDIL---ADAELRIDQADRKLNILD 68 (194)
T ss_pred HHHHHHHHHHH-HHHHHHHHhHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 33334444433 3456677877776665 445667777777665443
No 292
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=25.19 E-value=2.1e+02 Score=18.96 Aligned_cols=12 Identities=25% Similarity=0.407 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHH
Q 034185 37 LQQMQSRFQTMS 48 (102)
Q Consensus 37 LqQMQ~kFqtMS 48 (102)
.+.+|..|..++
T Consensus 30 y~~Lq~~~~~t~ 41 (70)
T PF04899_consen 30 YADLQHMFEQTS 41 (70)
T ss_pred HHHHHHHHHHhH
Confidence 344444454444
No 293
>PF11460 DUF3007: Protein of unknown function (DUF3007); InterPro: IPR021562 This is a family of uncharacterised proteins found in bacteria and eukaryotes.
Probab=25.19 E-value=92 Score=22.50 Aligned_cols=48 Identities=17% Similarity=0.214 Sum_probs=22.5
Q ss_pred eehhchhhhHHhh---cCCCCCCCCCCHHHHHHHHHHH-HHHHHHHHHHHHHH
Q 034185 2 FCLICSNWLLFWQ---DGHDSEDPKQSTADMTVFVQNL-LQQMQSRFQTMSDS 50 (102)
Q Consensus 2 ~~~~~~~~~~~~~---~~~~s~dpkqs~~dLT~~Vq~L-LqQMQ~kFqtMS~~ 50 (102)
+|+++..|+.-.. -+.+.|=.+ .-.+--..|+.+ =++||.||+.|+.+
T Consensus 42 lv~glvgW~~sYlfRV~t~~MTy~~-Q~k~Ye~a~~~~~~~~lqkRle~l~~e 93 (104)
T PF11460_consen 42 LVLGLVGWVSSYLFRVVTGKMTYMQ-QRKDYEEAVDQLTNEELQKRLEELSPE 93 (104)
T ss_pred HHHHHHHHHhHHHhhhccCCCcHHH-HHHHHHHHHHHHhHHHHHHHHHhCCHH
Confidence 4566667764322 234443333 233344444333 23466666666654
No 294
>PF04380 BMFP: Membrane fusogenic activity; InterPro: IPR007475 BMFP consists of two structural domains, a coiled-coil C-terminal domain via which the protein self-associates as a trimer, and an N-terminal domain disordered at neutral pH but adopting an amphipathic alpha-helical structure in the presence of phospholipid vesicles, high ionic strength, acidic pH or SDS. BMFP interacts with phospholipid vesicles though the predicted amphipathic alpha-helix induced in the N-terminal half of the protein and promotes aggregation and fusion of vesicles in vitro.
Probab=25.14 E-value=2.1e+02 Score=18.85 Aligned_cols=42 Identities=19% Similarity=0.331 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHH--------HH---HHHHHHHHhHHHHhhhHHHHHH
Q 034185 26 TADMTVFVQNLLQQMQSR--------FQ---TMSDSIVTKIDEMGNRINELEQ 67 (102)
Q Consensus 26 ~~dLT~~Vq~LLqQMQ~k--------Fq---tMS~~I~~RiDeMg~RIDdLEk 67 (102)
..|+...|...+++.=.| |+ .|-...-.||+.+-.||.+||+
T Consensus 26 ~~e~e~~~r~~l~~~l~kldlVtREEFd~q~~~L~~~r~kl~~LEarl~~LE~ 78 (79)
T PF04380_consen 26 REEIEKNIRARLQSALSKLDLVTREEFDAQKAVLARTREKLEALEARLAALEA 78 (79)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345555555555554333 43 3333444677777777777775
No 295
>PF14372 DUF4413: Domain of unknown function (DUF4413)
Probab=25.09 E-value=2.2e+02 Score=19.12 Aligned_cols=45 Identities=18% Similarity=0.393 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHH----------------------HHHHHHHhH--HHHhhhHHHHHHHHHHHHHh
Q 034185 31 VFVQNLLQQMQSRFQT----------------------MSDSIVTKI--DEMGNRINELEQSINDLRAE 75 (102)
Q Consensus 31 ~~Vq~LLqQMQ~kFqt----------------------MS~~I~~Ri--DeMg~RIDdLEksI~dLm~q 75 (102)
..+.++.+.|+.||+. .-+..+.++ ++.+.+|+++.+.+.+|-.+
T Consensus 31 ~~l~~ma~~M~~KfdKYw~~~~~~l~ia~ILDPR~Kl~~~~~~~~~~~~~~~~~~~~~v~~~l~~Lf~~ 99 (101)
T PF14372_consen 31 PDLKNMAKKMKEKFDKYWKDCNLLLAIATILDPRFKLEFLEFCFSKLYGSDAKEKIEEVRDKLYELFDE 99 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHh
Confidence 3566777788888873 112223443 56777888888888877654
No 296
>KOG3650 consensus Predicted coiled-coil protein [General function prediction only]
Probab=25.00 E-value=1.6e+02 Score=21.71 Aligned_cols=34 Identities=26% Similarity=0.448 Sum_probs=23.3
Q ss_pred hHHHHhhhHHH--------------HHHHHHHHHHhhCCCCCCCCCCC
Q 034185 54 KIDEMGNRINE--------------LEQSINDLRAEMGVEGSPSPLTP 87 (102)
Q Consensus 54 RiDeMg~RIDd--------------LEksI~dLm~qaG~e~~p~~s~~ 87 (102)
-+||.|.|+|. |-+-|..||....|=.+..|+++
T Consensus 71 TLdDLSqRVdsVKEEnLKLrSENQVLGQYIeNLMSaSSVFQst~ps~~ 118 (120)
T KOG3650|consen 71 TLDDLSQRVDSVKEENLKLRSENQVLGQYIENLMSASSVFQSTDPSSK 118 (120)
T ss_pred HHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHhhhhhhhcCCCccc
Confidence 35666666664 44568889988888777777643
No 297
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=24.91 E-value=1.1e+02 Score=19.87 Aligned_cols=21 Identities=38% Similarity=0.567 Sum_probs=16.5
Q ss_pred HHHHhhhHHHHHHHHHHHHHh
Q 034185 55 IDEMGNRINELEQSINDLRAE 75 (102)
Q Consensus 55 iDeMg~RIDdLEksI~dLm~q 75 (102)
++|...||-.||..|.-+-+.
T Consensus 23 v~EL~~RIa~L~aEI~R~~~~ 43 (59)
T PF06698_consen 23 VEELEERIALLEAEIARLEAA 43 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 688888888888888776554
No 298
>PRK15364 pathogenicity island 2 effector protein SseB; Provisional
Probab=24.90 E-value=3.1e+02 Score=21.99 Aligned_cols=35 Identities=14% Similarity=0.301 Sum_probs=22.9
Q ss_pred HHHHHH-HHHHHHHHHHHH--HhHHHHhhhHHHHHHHH
Q 034185 35 NLLQQM-QSRFQTMSDSIV--TKIDEMGNRINELEQSI 69 (102)
Q Consensus 35 ~LLqQM-Q~kFqtMS~~I~--~RiDeMg~RIDdLEksI 69 (102)
+||+.| ..||..|+..-- .---+|++|+|+.=+.+
T Consensus 51 ~ll~~La~akf~~Mq~~s~~ar~aQ~mAN~VDevIA~v 88 (196)
T PRK15364 51 MVIQAIANNKFIEVQKNAERARNTQEKSNEMDEVIAKA 88 (196)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666 677888876432 22368999998764444
No 299
>PF04157 EAP30: EAP30/Vps36 family; InterPro: IPR007286 EAP30 is a subunit of the ELL complex. The ELL is an 80kDa RNA polymerase II transcription factor. ELL interacts with three other proteins to form the complex known as ELL complex. The ELL complex is capable of increasing that catalytic rate of transcription elongation, but is unable to repress initiation of transcription by RNA polymerase II as is the case of ELL. EAP30 is thought to lead to the derepression of ELL's transcriptional inhibitory activity. ; PDB: 2ZME_A 3CUQ_A 1W7P_D 1U5T_B.
Probab=24.74 E-value=1.5e+02 Score=22.45 Aligned_cols=47 Identities=17% Similarity=0.259 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHhhCCCCCC
Q 034185 35 NLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDLRAEMGVEGSP 82 (102)
Q Consensus 35 ~LLqQMQ~kFqtMS~~I~~RiDeMg~RIDdLEksI~dLm~qaG~e~~p 82 (102)
.|..|+++ |..+...+..++..=.+.--+.+..+..+....|++.+.
T Consensus 30 ~L~~qa~~-~~~~l~~fa~k~~~~i~~~~~~r~~f~~~~~~lGvdp~~ 76 (223)
T PF04157_consen 30 ALMSQAKD-FVELLENFARKHKSEIKSDPEFRSQFQSMCASLGVDPLA 76 (223)
T ss_dssp HHHHHHHH-HHHHHHHHHHHHCCCCCCSHHHHHHHHHHHHHHT--CHC
T ss_pred HHHHHHHH-HHHHHHHHHHHhhccccCCchHHHHHHHHHHHcCCCccc
Confidence 34444433 777777777888776777778888999999999998754
No 300
>PF11225 DUF3024: Protein of unknown function (DUF3024); InterPro: IPR021388 This entry is represented by Bacteriophage 933W, L0084. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=24.68 E-value=45 Score=20.75 Aligned_cols=10 Identities=40% Similarity=1.209 Sum_probs=8.3
Q ss_pred hhhhHHhhcC
Q 034185 7 SNWLLFWQDG 16 (102)
Q Consensus 7 ~~~~~~~~~~ 16 (102)
..|.||||+.
T Consensus 16 ~~W~lyw~~~ 25 (57)
T PF11225_consen 16 GCWKLYWMDH 25 (57)
T ss_pred CEEEEEEECC
Confidence 3699999996
No 301
>COG4570 Rus Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=24.67 E-value=61 Score=24.30 Aligned_cols=17 Identities=24% Similarity=0.431 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHhhCC
Q 034185 62 INELEQSINDLRAEMGV 78 (102)
Q Consensus 62 IDdLEksI~dLm~qaG~ 78 (102)
||+|-|++-|.|+.+|+
T Consensus 84 lDNl~K~l~Daltk~g~ 100 (132)
T COG4570 84 LDNLLKALLDALTKAGV 100 (132)
T ss_pred HHHHHHHHHHHHhhcce
Confidence 99999999999999996
No 302
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=24.62 E-value=4.1e+02 Score=22.05 Aligned_cols=48 Identities=15% Similarity=0.347 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH------HHHHhHHHHhhhHHHHHHHHHHHHH
Q 034185 27 ADMTVFVQNLLQQMQSRFQTMSD------SIVTKIDEMGNRINELEQSINDLRA 74 (102)
Q Consensus 27 ~dLT~~Vq~LLqQMQ~kFqtMS~------~I~~RiDeMg~RIDdLEksI~dLm~ 74 (102)
.+.-..++.-+++++.+-+.+.. ..-.++.+.-.+|+.+|+.|.++..
T Consensus 241 ~~~~~~l~~~~~~~~~~i~~l~~~l~~~~k~~~k~~~~~~q~~~~~k~~~~~~~ 294 (406)
T PF02388_consen 241 KEYLESLQEKLEKLEKEIEKLEEKLEKNPKKKNKLKELEEQLASLEKRIEEAEE 294 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-THHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556666667777766666 3567888999999999998887764
No 303
>COG5158 SEC1 Proteins involved in synaptic transmission and general secretion, Sec1 family [Intracellular trafficking and secretion]
Probab=24.57 E-value=2.9e+02 Score=25.13 Aligned_cols=32 Identities=16% Similarity=0.355 Sum_probs=21.6
Q ss_pred HhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 034185 12 FWQDGHDSEDPKQSTADMTVFVQNLLQQMQSRFQTMS 48 (102)
Q Consensus 12 ~~~~~~~s~dpkqs~~dLT~~Vq~LLqQMQ~kFqtMS 48 (102)
||++...- +--|+...|+..+++++.+++...
T Consensus 278 ~w~~~k~~-----~f~~v~e~l~~~~~~l~~~~~~~~ 309 (582)
T COG5158 278 FWNDNKFL-----NFGEVGEKLKKLAKELKTKAQLRH 309 (582)
T ss_pred hHHHhccC-----chhhHHHHHHHHHHHHHHHHhhhh
Confidence 56654332 456777777777777777777776
No 304
>PF04163 Tht1: Tht1-like nuclear fusion protein ; InterPro: IPR007292 Nuclear fusion protein KAR5 is an integral membrane protein that is thought to be required for the fusion of nuclear envelopes during karyogamy.
Probab=24.41 E-value=3.1e+02 Score=24.61 Aligned_cols=35 Identities=23% Similarity=0.366 Sum_probs=24.2
Q ss_pred CHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhHHHHh
Q 034185 25 STADMTVFVQNLLQQMQ-------SRFQTMSDSIVTKIDEMG 59 (102)
Q Consensus 25 s~~dLT~~Vq~LLqQMQ-------~kFqtMS~~I~~RiDeMg 59 (102)
-..+|+.+++.+|+++- +.|......|++.+..++
T Consensus 383 l~p~l~~~~~~ll~~~~~~~s~l~~~f~~w~~~i~~tf~~i~ 424 (544)
T PF04163_consen 383 LLPSLTNFKNQLLQEWTMMTSNLNSDFALWNREIFSTFESIS 424 (544)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhhHHHhhHHHHHHHHHHH
Confidence 35578888888888765 556666666666666665
No 305
>PF14301 DUF4376: Domain of unknown function (DUF4376)
Probab=24.40 E-value=2.1e+02 Score=18.57 Aligned_cols=37 Identities=24% Similarity=0.470 Sum_probs=26.1
Q ss_pred hhHHhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 034185 9 WLLFWQDGHDSEDPKQSTADMTVFVQNLLQQMQSRFQT 46 (102)
Q Consensus 9 ~~~~~~~~~~s~dpkqs~~dLT~~Vq~LLqQMQ~kFqt 46 (102)
+-.+|-+.-++.-|- +.++|.++.+.+...-+.-|+.
T Consensus 55 ~~~~W~~adn~~v~l-t~~~l~~~~~a~~~~~~~~~~~ 91 (111)
T PF14301_consen 55 ESFFWKDADNSFVPL-TAEQLIALAQAMAAHVQACFQR 91 (111)
T ss_pred CceeccCCCCCEeec-cHHHHHHHHHHHHHHHHHHHHH
Confidence 345787777766665 7778888877777777666654
No 306
>PF08020 DUF1706: Protein of unknown function (DUF1706) ; InterPro: IPR012550 This family contains many hypothetical proteins from bacteria and yeast.
Probab=24.39 E-value=76 Score=23.83 Aligned_cols=46 Identities=11% Similarity=0.214 Sum_probs=32.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHH
Q 034185 25 STADMTVFVQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDLRA 74 (102)
Q Consensus 25 s~~dLT~~Vq~LLqQMQ~kFqtMS~~I~~RiDeMg~RIDdLEksI~dLm~ 74 (102)
+-+||...++.-.+.|..-|+.|+++.....-+-| ...+|+.|++.
T Consensus 6 tK~eLl~ai~~~~~kL~~~~~~ipee~~~~~~~~~----~~d~~~~DvLa 51 (166)
T PF08020_consen 6 TKAELLEAIEKNYEKLISEIDSIPEEQKDTPFDFG----GRDRNPRDVLA 51 (166)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhCCHHHhcCccccc----cccCCHHHHHH
Confidence 77888888888888888888887766543332222 67888888764
No 307
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=24.38 E-value=2.2e+02 Score=22.31 Aligned_cols=45 Identities=16% Similarity=0.243 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHH
Q 034185 28 DMTVFVQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDL 72 (102)
Q Consensus 28 dLT~~Vq~LLqQMQ~kFqtMS~~I~~RiDeMg~RIDdLEksI~dL 72 (102)
-++.-...+.+++....+.+...+-.+++.-..|++.|.+.+...
T Consensus 140 ~~~~~~~~~~~~l~~~~~~l~~~~~~~l~~~~~~L~~l~~~l~~~ 184 (319)
T PF02601_consen 140 LIVPDRRELLQRLDELRQRLNRAMRNRLQRKRQRLNQLAKRLQLQ 184 (319)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 345666677777777777777777777777777777777766543
No 308
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=24.36 E-value=1.1e+02 Score=25.61 Aligned_cols=19 Identities=26% Similarity=0.604 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 034185 30 TVFVQNLLQQMQSRFQTMS 48 (102)
Q Consensus 30 T~~Vq~LLqQMQ~kFqtMS 48 (102)
.+||++|+.|--++|+++-
T Consensus 84 ~aYVe~LFD~~Ae~Fd~~L 102 (287)
T COG4976 84 SAYVETLFDQYAERFDHIL 102 (287)
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 4899999999999998753
No 309
>PF05565 Sipho_Gp157: Siphovirus Gp157; InterPro: IPR008840 This family contains both viral and bacterial proteins which are related to the Gp157 protein of the Streptococcus thermophilus SFi bacteriophage. It is thought that bacteria possessing the gene coding for this protein have an increased resistance to the bacteriophage [].
Probab=24.35 E-value=2.9e+02 Score=20.22 Aligned_cols=39 Identities=15% Similarity=0.389 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHH
Q 034185 33 VQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSIND 71 (102)
Q Consensus 33 Vq~LLqQMQ~kFqtMS~~I~~RiDeMg~RIDdLEksI~d 71 (102)
+.+.|+.++..|+.=.+.|..-|..+-..++-+.+.+..
T Consensus 27 ~~dtLe~i~~~~~~K~~~~~~~Ik~~ea~~e~~k~E~kr 65 (162)
T PF05565_consen 27 IADTLESIEDEIEEKADNIAKVIKNLEADIEAIKAEIKR 65 (162)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 344455555555554455554444444444444444333
No 310
>PF07047 OPA3: Optic atrophy 3 protein (OPA3); InterPro: IPR010754 OPA3 deficiency causes type III 3-methylglutaconic aciduria (MGA) in humans. This disease manifests with early bilateral optic atrophy, spasticity, extrapyramidal dysfunction, ataxia, and cognitive deficits, but normal longevity []. This family consists of several optic atrophy 3 (OPA3) proteins and related proteins from other eukaryotic species, the function is unknown.
Probab=24.33 E-value=1.1e+02 Score=21.89 Aligned_cols=23 Identities=35% Similarity=0.644 Sum_probs=17.0
Q ss_pred HhHHHHhhhHHHHHHHHHHHHHh
Q 034185 53 TKIDEMGNRINELEQSINDLRAE 75 (102)
Q Consensus 53 ~RiDeMg~RIDdLEksI~dLm~q 75 (102)
.|-++.-.|+++||..|.+|..+
T Consensus 105 ~Ke~~~~~~l~~L~~~i~~L~~~ 127 (134)
T PF07047_consen 105 KKEEELQERLEELEERIEELEEQ 127 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777888888888887765
No 311
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=24.20 E-value=3.3e+02 Score=20.79 Aligned_cols=29 Identities=14% Similarity=0.392 Sum_probs=25.6
Q ss_pred HhHHHHhhhHHHHHHHHHHHHHhhCCCCC
Q 034185 53 TKIDEMGNRINELEQSINDLRAEMGVEGS 81 (102)
Q Consensus 53 ~RiDeMg~RIDdLEksI~dLm~qaG~e~~ 81 (102)
.||..|+..+..-|+.+..++..++++..
T Consensus 150 kKl~~l~~~lE~keaqL~evl~~~nldp~ 178 (201)
T PF13851_consen 150 KKLQALSEQLEKKEAQLNEVLAAANLDPA 178 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 67899999999999999999999887654
No 312
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=24.16 E-value=2.3e+02 Score=23.87 Aligned_cols=47 Identities=28% Similarity=0.506 Sum_probs=35.3
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHhhhHHHHHHHHHH
Q 034185 23 KQSTADMTVFVQNLLQQMQSRFQTMSDSI-VTKIDEMGNRINELEQSIND 71 (102)
Q Consensus 23 kqs~~dLT~~Vq~LLqQMQ~kFqtMS~~I-~~RiDeMg~RIDdLEksI~d 71 (102)
.++..||-...-.||+.+.+|==.++.|= ..|| .|+||-+||+-+.-
T Consensus 271 ~~s~sdLksl~~aLle~indK~~al~Hqr~tNkI--Lg~rv~ELE~kl~~ 318 (319)
T PF09789_consen 271 PQSISDLKSLATALLETINDKNLALQHQRKTNKI--LGNRVAELEKKLKT 318 (319)
T ss_pred cchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--HHHHHHHHHHHHhc
Confidence 34889999999999999999965555431 1233 58999999998754
No 313
>PF06840 DUF1241: Protein of unknown function (DUF1241); InterPro: IPR009652 This family consists of several programmed cell death 10 protein (PDCD10 or TFAR15) sequences. The function of this family is unknown.; PDB: 3L8I_A 3RQG_B 3RQE_B 3L8J_A 3RQF_B 3AJM_B.
Probab=24.11 E-value=1.7e+02 Score=22.24 Aligned_cols=30 Identities=33% Similarity=0.572 Sum_probs=19.4
Q ss_pred HHHHHHHHhH-HHHhhh------HHHHHHHHHHHHHh
Q 034185 46 TMSDSIVTKI-DEMGNR------INELEQSINDLRAE 75 (102)
Q Consensus 46 tMS~~I~~Ri-DeMg~R------IDdLEksI~dLm~q 75 (102)
+.-..|++|| |||+.| |.++=.+|-+|..-
T Consensus 99 ~~LK~iLSrIPdei~dR~~FL~tIK~IAsaIK~lLdA 135 (154)
T PF06840_consen 99 TALKRILSRIPDEISDRRTFLETIKEIASAIKKLLDA 135 (154)
T ss_dssp HHHHHHHHTHHHHTTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCcHhhcchHHHHHHHHHHHHHHHHHHHH
Confidence 3446788888 888887 44555555555543
No 314
>PF03273 Baculo_gp64: Baculovirus gp64 envelope glycoprotein family; InterPro: IPR004955 Gp64 is the major envelope fusion glycoprotein in some, though not all, baculoviruses [, ]. It is found on the surface of both infected cells and budded virions as a homotrimer, and by determining the viral receptor preferences it defines the host range and infection efficiency. Baculovirus enters its host cells by endocytosis followed by a low-pH-induced fusion of the viral envelope with the endosomal membrane, allowing viral entrance into the cell cytoplasm. This membrane fusion, and also the efficient budding of virions from the infected cell, is dependent on Gp64. Gp75 is a homologous envelope glycoprotein from Thogotoviruses that, like Gp64, forms homotrimers and is involved in both binding and entering the host cell [].; GO: 0019048 virus-host interaction, 0019031 viral envelope; PDB: 3DUZ_A.
Probab=24.03 E-value=4.3e+02 Score=23.92 Aligned_cols=53 Identities=17% Similarity=0.270 Sum_probs=32.5
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHH
Q 034185 17 HDSEDPKQSTADMTVFVQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSIND 71 (102)
Q Consensus 17 ~~s~dpkqs~~dLT~~Vq~LLqQMQ~kFqtMS~~I~~RiDeMg~RIDdLEksI~d 71 (102)
|+...+. |-.||-+++..++=+-+.-+-+ ..++-.|+.+|.+++++|=+||+-
T Consensus 276 ~~~g~~A-S~~Dl~~i~~~lmyE~~~Lr~n-l~~L~~~~~~l~~~l~~vI~SvaK 328 (498)
T PF03273_consen 276 HDLGATA-SKEDLMNIQESLMYENEGLRYN-LEQLHAHFNKLSNMLNTVIQSVAK 328 (498)
T ss_dssp --TTS----HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ccccccc-CHHHHHHHHHHHHHhchhhHhh-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455 7889999998876444333333 245667778888888888777653
No 315
>PF07195 FliD_C: Flagellar hook-associated protein 2 C-terminus; InterPro: IPR010809 The flagellar hook-associated protein 2 (HAP2 or FliD) forms the distal end of the flagella, and plays a role in mucin specific adhesion of the bacteria []. This alignment covers the C-terminal region of the flagellar hook-associated protein 2.; GO: 0007155 cell adhesion, 0009288 bacterial-type flagellum
Probab=23.99 E-value=1.9e+02 Score=22.02 Aligned_cols=22 Identities=36% Similarity=0.753 Sum_probs=10.7
Q ss_pred HHHhHHHHhhhHHHHHHHHHHH
Q 034185 51 IVTKIDEMGNRINELEQSINDL 72 (102)
Q Consensus 51 I~~RiDeMg~RIDdLEksI~dL 72 (102)
|-.|.+-+.++|+.|++.|.++
T Consensus 191 i~~~~~~l~~~~~~~~~~i~~~ 212 (239)
T PF07195_consen 191 ITSRIDSLNSQIKSLDKQIEDL 212 (239)
T ss_pred hhhHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555554444
No 316
>PF12732 YtxH: YtxH-like protein; InterPro: IPR024623 This family of uncharacterised proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved.
Probab=23.92 E-value=2e+02 Score=18.19 Aligned_cols=46 Identities=11% Similarity=0.297 Sum_probs=20.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHH
Q 034185 25 STADMTVFVQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDLR 73 (102)
Q Consensus 25 s~~dLT~~Vq~LLqQMQ~kFqtMS~~I~~RiDeMg~RIDdLEksI~dLm 73 (102)
.-++|...++.+-+++++.++.+-+.+-.+.++ -.|++...+.+++
T Consensus 27 ~R~~l~~~~~~~~~~~~~~~~~~~~~~k~~~~~---~~~~~~e~~~e~~ 72 (74)
T PF12732_consen 27 TREKLKDKAEDLKDKAKDLYEEAKEKVKEKAEE---TADEAKEKAKELK 72 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhh
Confidence 344444444444444444444444434334444 2333444444443
No 317
>COG3159 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.90 E-value=87 Score=25.29 Aligned_cols=24 Identities=29% Similarity=0.479 Sum_probs=19.5
Q ss_pred HHHHhhhHHHHHHHHHHHHHhhCC
Q 034185 55 IDEMGNRINELEQSINDLRAEMGV 78 (102)
Q Consensus 55 iDeMg~RIDdLEksI~dLm~qaG~ 78 (102)
++---.||++||..++.||.+|.-
T Consensus 47 l~r~R~~~~~Le~~l~~L~~~A~~ 70 (218)
T COG3159 47 LARLRNRIRELEEELAALMENARA 70 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344567999999999999998863
No 318
>PF01346 FKBP_N: Domain amino terminal to FKBP-type peptidyl-prolyl isomerase; InterPro: IPR000774 Peptidyl-prolyl cis-trans isomerase (PPIase) catalyses the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides [, ]. This alpha helical domain is found at the N terminus of proteins belonging to the FKBP-type peptidyl-prolyl cis-trans isomerase(IPR001179 from INTERPRO) family. Peptidyl-prolyl cis-trans isomerase has been shown to accelerate the refolding of several proteins in vitro [, , ]; the FKPB-type enzymes probably act in the folding of extracytoplasmic proteins.; GO: 0006457 protein folding; PDB: 1FD9_A 2VCD_A 3OE2_A 2UZ5_A 3B09_A 1Q6H_B 1Q6I_B 1Q6U_A.
Probab=23.82 E-value=2.3e+02 Score=18.95 Aligned_cols=63 Identities=21% Similarity=0.185 Sum_probs=39.8
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHhhCCCCCCCC
Q 034185 16 GHDSEDPKQSTADMTVFVQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDLRAEMGVEGSPSP 84 (102)
Q Consensus 16 ~~~s~dpkqs~~dLT~~Vq~LLqQMQ~kFqtMS~~I~~RiDeMg~RIDdLEksI~dLm~qaG~e~~p~~ 84 (102)
+.....|.-+.+++..+++.+.++++.+.+..-... ...++..=++=+.+.-.+.||-.+++.
T Consensus 57 al~~~~~~l~~~e~~~~l~~~~~~~~~~~~~~~~~~------~~~~~~~~~~fla~n~k~~GV~~t~SG 119 (124)
T PF01346_consen 57 ALAGKKPKLSDEEAQEALQAFQQKMQAKQQEKMAKA------AEKNKAEGEAFLAENAKKEGVKTTESG 119 (124)
T ss_dssp HHCTT--SS-HHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHTSTTEEE-TTS
T ss_pred HHhcCCcCCCHHHHHHHHHHHHHHHHHHhhcchhhh------hhhhHHHHHHHHHHHcCCCCCEECCCC
Confidence 344566777889999999998888888886543222 333445555667777777887776653
No 319
>PHA03191 UL14 tegument protein; Provisional
Probab=23.59 E-value=2.3e+02 Score=23.26 Aligned_cols=53 Identities=23% Similarity=0.398 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHhHHHHhhhHH------------HHHHHHHHHHHhhCCCCCCCCCCCCCCC
Q 034185 39 QMQSRFQTMSDSIVTKIDEMGNRIN------------ELEQSINDLRAEMGVEGSPSPLTPSKTN 91 (102)
Q Consensus 39 QMQ~kFqtMS~~I~~RiDeMg~RID------------dLEksI~dLm~qaG~e~~p~~s~~~~~~ 91 (102)
.++++|+...+.|+.+.|.++.-++ .|...=.+|+.+--.++.|.+-+|+++.
T Consensus 102 df~e~lD~~ED~i~dkEd~L~da~~di~l~~~~~~~~wLdeedEALLtkW~Le~aP~~~~~~~~~ 166 (238)
T PHA03191 102 ELQSQLDQAEEDILDKEDILTQACDDITLADSSEDIEELDEEAEALLTKWILEQKPRPRLPTAKT 166 (238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCcccccchHHHHHHHHHHhcCCCCCCccccc
Confidence 4677788888888887777655444 4445556677777777777776665553
No 320
>PRK06798 fliD flagellar capping protein; Validated
Probab=23.57 E-value=1.4e+02 Score=25.38 Aligned_cols=20 Identities=15% Similarity=0.456 Sum_probs=9.6
Q ss_pred HHHHHhHHHHhhhHHHHHHH
Q 034185 49 DSIVTKIDEMGNRINELEQS 68 (102)
Q Consensus 49 ~~I~~RiDeMg~RIDdLEks 68 (102)
+.+-.+|+.+..|++++|..
T Consensus 382 ~~l~~~i~~l~~~~~~~e~r 401 (440)
T PRK06798 382 KSIDNRVSKLDLKITDIDTQ 401 (440)
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555544
No 321
>PRK00892 lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Provisional
Probab=23.56 E-value=56 Score=26.13 Aligned_cols=20 Identities=25% Similarity=0.622 Sum_probs=17.5
Q ss_pred HHHHhHHHHhhhHHHHHHHH
Q 034185 50 SIVTKIDEMGNRINELEQSI 69 (102)
Q Consensus 50 ~I~~RiDeMg~RIDdLEksI 69 (102)
..+.|+.||-+|+.+|||.+
T Consensus 321 ~~~~~l~~~~~~~~~~~~~~ 340 (343)
T PRK00892 321 ARLRRLDELRKRLKALEKKV 340 (343)
T ss_pred HHHhhhHHHHHHHHHHHHHh
Confidence 46789999999999999974
No 322
>PF14335 DUF4391: Domain of unknown function (DUF4391)
Probab=23.47 E-value=2.7e+02 Score=21.16 Aligned_cols=54 Identities=19% Similarity=0.383 Sum_probs=36.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHhHHHHhhhHHHHHHHHHHHHHhhCCCC
Q 034185 25 STADMTVFVQNLLQQMQSRFQTMSD-------SIVTKIDEMGNRINELEQSINDLRAEMGVEG 80 (102)
Q Consensus 25 s~~dLT~~Vq~LLqQMQ~kFqtMS~-------~I~~RiDeMg~RIDdLEksI~dLm~qaG~e~ 80 (102)
+..+|-++-+++++|+..---. .. .+-.+++.+ .+|..||+.|..|-+++.-|-
T Consensus 142 ~~~~l~~lY~~l~~~i~~~~~~-~~~g~~~~~~~~~~~~~~-~~i~~L~kei~~L~~~~~kEk 202 (221)
T PF14335_consen 142 PGLNLDALYESLVNQIIALNAA-PNTGEFEKTSLWERIERL-EQIEKLEKEIAKLKKKIKKEK 202 (221)
T ss_pred ccccHHHHHHHHHHHHhcchhh-hhcCccccCCHHHHHHHH-HHHHHHHHHHHHHHHHHHhcc
Confidence 4678889999999988643211 11 444444444 458999999999988776443
No 323
>COG0598 CorA Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]
Probab=23.46 E-value=3.3e+02 Score=21.67 Aligned_cols=34 Identities=9% Similarity=0.333 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHH
Q 034185 30 TVFVQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSIN 70 (102)
Q Consensus 30 T~~Vq~LLqQMQ~kFqtMS~~I~~RiDeMg~RIDdLEksI~ 70 (102)
..++-.||..+.++|-. -+++++.++|+||..|-
T Consensus 138 ~~l~~~lld~i~d~~~~-------~le~i~~~~~~ie~~l~ 171 (322)
T COG0598 138 DELLYALLDAIVDNYFP-------VLEQIEDELEAIEDQLL 171 (322)
T ss_pred HHHHHHHHHHHHHhhHH-------HHHHHHHHHHHHHHHHh
Confidence 34555677777777754 45566666666665553
No 324
>PF02932 Neur_chan_memb: Neurotransmitter-gated ion-channel transmembrane region ion channel family signature gamma-aminobutyric acid (GABA) receptor signature nicotinic acetylcholine receptor signature; InterPro: IPR006029 Neurotransmitter ligand-gated ion channels are transmembrane receptor-ion channel complexes that open transiently upon binding of specific ligands, allowing rapid transmission of signals at chemical synapses [, ]. Five of these ion channel receptor families have been shown to form a sequence-related superfamily: Nicotinic acetylcholine receptor (AchR), an excitatory cation channel in vertebrates and invertebrates; in vertebrate motor endplates it is composed of alpha, beta, gamma and delta/epsilon subunits; in neurons it is composed of alpha and non-alpha (or beta) subunits []. Glycine receptor, an inhibitory chloride ion channel composed of alpha and beta subunits []. Gamma-aminobutyric acid (GABA) receptor, an inhibitory chloride ion channel; at least four types of subunits (alpha, beta, gamma and delta) are known []. Serotonin 5HT3 receptor, of which there are seven major types (5HT3-5HT7) []. Glutamate receptor, an excitatory cation channel of which at least three types have been described (kainate, N-methyl-D-aspartate (NMDA) and quisqualate) []. These receptors possess a pentameric structure (made up of varying subunits), surrounding a central pore. All known sequences of subunits from neurotransmitter-gated ion-channels are structurally related. They are composed of a large extracellular glycosylated N-terminal ligand-binding domain, followed by three hydrophobic transmembrane regions which form the ionic channel, followed by an intracellular region of variable length. A fourth hydrophobic region is found at the C-terminal of the sequence [, ]. This domain represents four transmembrane helices of a variety of neurotransmitter-gated ion-channels.; GO: 0006811 ion transport, 0016020 membrane; PDB: 1DXZ_A 3MRA_A 1EQ8_C 1OED_C 2PR9_P 1A11_A 1CEK_A 2BG9_E 2KSR_A 2K59_B ....
Probab=23.19 E-value=56 Score=21.33 Aligned_cols=29 Identities=28% Similarity=0.636 Sum_probs=18.1
Q ss_pred hhchhhhHHhhcCCCCCCCCCCHHHHHHHHHHHHH
Q 034185 4 LICSNWLLFWQDGHDSEDPKQSTADMTVFVQNLLQ 38 (102)
Q Consensus 4 ~~~~~~~~~~~~~~~s~dpkqs~~dLT~~Vq~LLq 38 (102)
+....|+-||++- ++ .++-++--|-.||-
T Consensus 8 i~~~s~~~f~~~~-~~-----~~~rv~l~it~lL~ 36 (237)
T PF02932_consen 8 IVVLSWLSFWLPP-ES-----GPERVTLGITTLLA 36 (237)
T ss_dssp HHHHHHHHHHHHH-HS-----THHHHHHHHHHHHH
T ss_pred HHHHHHhheEeCc-cc-----cccccccchhHHHH
Confidence 4567899999983 22 24556655555543
No 325
>PRK10626 hypothetical protein; Provisional
Probab=23.09 E-value=4.1e+02 Score=21.53 Aligned_cols=37 Identities=16% Similarity=0.232 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHH
Q 034185 38 QQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDLRA 74 (102)
Q Consensus 38 qQMQ~kFqtMS~~I~~RiDeMg~RIDdLEksI~dLm~ 74 (102)
+.++.+...=+..+-.+=+++.+|+.+||..=.+|+.
T Consensus 200 ~~Ie~e~~~q~~d~~~~~~~vC~~~~~le~qr~~L~~ 236 (239)
T PRK10626 200 QAIQTEWKNQEKDFQQFGKDVCSRVVTLEDQRKALVG 236 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6666666666666667777888888888888777775
No 326
>COG0783 Dps DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]
Probab=23.02 E-value=3.2e+02 Score=20.49 Aligned_cols=36 Identities=17% Similarity=0.434 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHH------------HHhhhHHHHHHHH
Q 034185 34 QNLLQQMQSRFQTMSDSIVTKID------------EMGNRINELEQSI 69 (102)
Q Consensus 34 q~LLqQMQ~kFqtMS~~I~~RiD------------eMg~RIDdLEksI 69 (102)
+..|+.+-..|..++..+-..++ =|..+|.++||.+
T Consensus 101 ~~~l~~l~~~~~~l~~~~r~~~~~a~e~gD~~Tadl~~~~~~~~EK~~ 148 (156)
T COG0783 101 REMLKELVEDYEYLIKELRKGIELADEAGDEVTADLLTDIIRELEKTL 148 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhcCChhHHHHHHHHHHHHHHHH
Confidence 33444444455555555554443 3677888888875
No 327
>PF11382 DUF3186: Protein of unknown function (DUF3186); InterPro: IPR021522 This bacterial family of proteins has no known function.
Probab=22.83 E-value=1.9e+02 Score=23.35 Aligned_cols=32 Identities=19% Similarity=0.542 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHH
Q 034185 34 QNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSI 69 (102)
Q Consensus 34 q~LLqQMQ~kFqtMS~~I~~RiDeMg~RIDdLEksI 69 (102)
.++..+|.++|..+. .+.+++..+++.|++.+
T Consensus 31 ~~l~~~l~~~~~~lr----~e~~~l~~~~~~~~~~~ 62 (308)
T PF11382_consen 31 PNLIDSLEDQFDSLR----EENDELRAELDALQAQL 62 (308)
T ss_pred hhhhhhhhhhHHHHH----HHHHHHHHHHHHHHHHH
Confidence 467788888887654 45566666666666666
No 328
>COG1394 NtpD Archaeal/vacuolar-type H+-ATPase subunit D [Energy production and conversion]
Probab=22.79 E-value=2.3e+02 Score=22.46 Aligned_cols=38 Identities=21% Similarity=0.437 Sum_probs=24.9
Q ss_pred HHHHHHHHH--HHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHH
Q 034185 28 DMTVFVQNL--LQQMQSRFQTMSDSIVTKIDEMGNRINELEQSI 69 (102)
Q Consensus 28 dLT~~Vq~L--LqQMQ~kFqtMS~~I~~RiDeMg~RIDdLEksI 69 (102)
.+..+++.+ |-.+++.|+.|. ..|..-.+|++.||+.|
T Consensus 132 ~~~elle~li~lae~e~~~~~L~----~Ei~~T~RRVNalE~~i 171 (211)
T COG1394 132 KFEELLEKLIELAELETTLRLLL----EEIRKTKRRVNALEYVI 171 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHhhhhhh
Confidence 344444444 234566666654 55678899999999876
No 329
>PRK11637 AmiB activator; Provisional
Probab=22.77 E-value=3.9e+02 Score=22.08 Aligned_cols=9 Identities=11% Similarity=-0.640 Sum_probs=3.6
Q ss_pred hhhhHHhhc
Q 034185 7 SNWLLFWQD 15 (102)
Q Consensus 7 ~~~~~~~~~ 15 (102)
+--.++++-
T Consensus 27 ~ll~~~~~~ 35 (428)
T PRK11637 27 SVLSAGVLL 35 (428)
T ss_pred HHHHHHHHH
Confidence 333344444
No 330
>PF00509 Hemagglutinin: Haemagglutinin; InterPro: IPR001364 Haemagglutinin (HA) is one of two main surface fusion glycoproteins embedded in the envelope of influenza viruses, the other being neuraminidase (NA). There are sixteen known HA subtypes (H1-H16) and nine NA subtypes (N1-N9), which together are used to classify influenza viruses (e.g. H5N1). The antigenic variations in HA and NA enable the virus to evade host antibodies made to previous influenza strains, accounting for recurrent influenza epidemics []. The HA glycoprotein is present in the viral membrane as a single polypeptide (HA0), which must be cleaved by the host's trypsin-like proteases to produce two peptides (HA1 and HA2) in order for the virus to be infectious. Once HA0 is cleaved, the newly exposed N-terminal of the HA2 peptide then acts to fuse the viral envelope to the cellular membrane of the host cell, which allows the viral negative-stranded RNA to infect the host cell. The type of host protease can influence the infectivity and pathogenicity of the virus. The haemagglutinin glycoprotein is a trimer containing three structurally distinct regions: a globular head consisting of anti-parallel beta-sheets that form a beta-sandwich with a jelly-roll fold (contains the receptor binding site and the HA1/HA2 cleavage site); a triple-stranded, coiled-coil, alpha-helical stalk; and a globular foot composed of anti-parallel beta-sheets [, ]. Each monomer consists of an intact HA0 polypeptide with the HA1 and HA2 regions linked by disulphide bonds. The N terminus of HA1 provides the central strand in the 5-stranded globular foot, while the rest of the HA1 chain makes its way to the 8-stranded globular head. HA2 provides two alpha helices, which form part of the triple-stranded coiled-coil that stabilises the trimer, its C terminus providing the remaining strands of the 5-stranded globular foot. This entry represents the entire haemagglutinin protein (HA0) consisting of both the HA1 and HA2 regions, as found in influenza A and B viruses.; GO: 0046789 host cell surface receptor binding, 0019064 viral envelope fusion with host membrane, 0019031 viral envelope; PDB: 2WR5_A 2IBX_A 2WR0_B 2WR1_C 2XN9_F 2WRF_I 3S11_E 3BT6_A 3SM5_E 2FK0_H ....
Probab=22.70 E-value=16 Score=32.88 Aligned_cols=44 Identities=16% Similarity=0.465 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHhh
Q 034185 33 VQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDLRAEM 76 (102)
Q Consensus 33 Vq~LLqQMQ~kFqtMS~~I~~RiDeMg~RIDdLEksI~dLm~qa 76 (102)
.|.-++|+..|++++.+.+-.+.+..+.+.++||+.|.+|-.+.
T Consensus 369 TQ~aid~it~kvN~iiek~n~~fe~i~~ef~~ve~Ri~~l~~~v 412 (550)
T PF00509_consen 369 TQKAIDQITKKVNSIIEKMNKQFEQIDKEFNEVEKRIDNLEKKV 412 (550)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCEEEECSCSSSTTGHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHhh
Confidence 46678888888888777777777888899999999999887653
No 331
>PF00561 Abhydrolase_1: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases.; InterPro: IPR000073 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents fold-1 of alpha/beta hydrolase.; PDB: 2VAT_E 2VAX_C 2VAV_H 2PSJ_A 2PSH_B 2PSE_A 2PSF_A 2PSD_A 2EDA_A 1CIJ_A ....
Probab=22.64 E-value=77 Score=21.39 Aligned_cols=39 Identities=21% Similarity=0.238 Sum_probs=25.9
Q ss_pred eehhchhhhHHhhcCC--CCCCCCCCHHHHHHHHHHHHHHH
Q 034185 2 FCLICSNWLLFWQDGH--DSEDPKQSTADMTVFVQNLLQQM 40 (102)
Q Consensus 2 ~~~~~~~~~~~~~~~~--~s~dpkqs~~dLT~~Vq~LLqQM 40 (102)
|..||.||.-|+.... ....+.-+..++.+.++.+++.+
T Consensus 1 f~vi~~d~rG~g~S~~~~~~~~~~~~~~~~~~~~~~~~~~l 41 (230)
T PF00561_consen 1 FDVILFDLRGFGYSSPHWDPDFPDYTTDDLAADLEALREAL 41 (230)
T ss_dssp EEEEEEECTTSTTSSSCCGSGSCTHCHHHHHHHHHHHHHHH
T ss_pred CEEEEEeCCCCCCCCCCccCCcccccHHHHHHHHHHHHHHh
Confidence 5667888877766552 14444556778888888777765
No 332
>PF03401 TctC: Tripartite tricarboxylate transporter family receptor; InterPro: IPR005064 Bordetella pertussis, the causative agent of human whooping cough (pertussis), is an obligate human pathogen with diverse high-affinity transport systems for the assimilation of iron, a biometal that is essential for growth []. Periplasmic binding proteins of a new family, particularly well represented in this organism (and more generally in beta-proteobacteria), have been called Bug receptors []. They adopt a characteristic Venus flytrap fold with two globular domains bisected by a ligand-binding cleft. The family is specific for carboxylated solutes, with a characteristic mode of binding involving two highly conserved beta strand-beta turn-alpha helix motifs originating from each domain. These two motifs form hydrogen bonds with a carboxylate group of the ligand, both directly and via conserved water molecules, and have thus been termed the carboxylate pincers. Domain 1 recognises the ligand and the carboxylate group serves as an initial anchoring point. Domain 2 discriminates between productively and non-productively bound ligands as proper interactions with this domain is needed for the of the closed conformation []. BugE has a glutamate bound ligand. No charged residues are involved in glutamate binding by BugE, unlike what has been described for all glutamate receptors reported so far. The Bug architecture is highly conserved despite limited sequence identity [].; GO: 0030288 outer membrane-bounded periplasmic space; PDB: 2QPQ_C 2DVZ_A 2F5X_A.
Probab=22.56 E-value=2.8e+02 Score=21.47 Aligned_cols=57 Identities=16% Similarity=0.255 Sum_probs=37.0
Q ss_pred CCCCHHHHHHHHHHHHHHHH--HHHHHHHHHHHH-----hHHHHhhhHHHHHHHHHHHHHhhCC
Q 034185 22 PKQSTADMTVFVQNLLQQMQ--SRFQTMSDSIVT-----KIDEMGNRINELEQSINDLRAEMGV 78 (102)
Q Consensus 22 pkqs~~dLT~~Vq~LLqQMQ--~kFqtMS~~I~~-----RiDeMg~RIDdLEksI~dLm~qaG~ 78 (102)
|+..+++.-..+...+++.- ..|+..-...-. -=++....|++=.+....|+.++|+
T Consensus 211 p~gtp~~~~~~l~~a~~~~~~~pe~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~l~~~~Gl 274 (274)
T PF03401_consen 211 PKGTPDEIVDKLADAIKKALEDPEFQEFLEKMGLEPVYMDGEEFDAFLAEEYARYKALIKELGL 274 (274)
T ss_dssp ETTS-HHHHHHHHHHHHHHHT-HHHHHHHHHHTEEEECESHHHHHHHHHHHHHHHHHHHHHTT-
T ss_pred CCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHCCCcCCCCCHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 45567777777777776653 234443322211 1278888999999999999999984
No 333
>PRK07857 hypothetical protein; Provisional
Probab=22.53 E-value=1.3e+02 Score=21.59 Aligned_cols=21 Identities=33% Similarity=0.499 Sum_probs=12.6
Q ss_pred HHHHhhhHHHHHHHHHHHHHh
Q 034185 55 IDEMGNRINELEQSINDLRAE 75 (102)
Q Consensus 55 iDeMg~RIDdLEksI~dLm~q 75 (102)
|+++=.+||+|.+.|-+|+++
T Consensus 30 L~~lR~eID~ID~eIl~LL~e 50 (106)
T PRK07857 30 IDELREEIDRLDAEILALVKR 50 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 455556666666666666553
No 334
>PF05842 Euplotes_phero: Euplotes octocarinatus mating pheromone protein; InterPro: IPR008612 This family consists of several mating pheromone proteins from Euplotes octocarinatus. Cells of the ten mating types of the ciliate E. octocarinatus communicate by pheromones before they enter conjugation. The pheromones induce homotypic pairing when applied to mating types that do not secrete the same pheromone(s). Heterotypic pairs (i.e., those between cells of different mating types) are formed only when both mating types in a mixture secrete a pheromone that the other does not. The genetics of mating types is based on four codominant mating type alleles, each allele determining production of a different pheromone. The pheromones not only induce pair formation but also attract cells [].; GO: 0005186 pheromone activity, 0007154 cell communication, 0005576 extracellular region
Probab=22.48 E-value=67 Score=24.28 Aligned_cols=18 Identities=50% Similarity=0.624 Sum_probs=12.4
Q ss_pred HHHHHHH-HHHHHHHHHHH
Q 034185 29 MTVFVQN-LLQQMQSRFQT 46 (102)
Q Consensus 29 LT~~Vq~-LLqQMQ~kFqt 46 (102)
||.-|.+ |-.|+|.|||.
T Consensus 3 MTSKVNTKLQSqiqSKfqS 21 (134)
T PF05842_consen 3 MTSKVNTKLQSQIQSKFQS 21 (134)
T ss_pred chhhhhHHHHHHHHHHHhh
Confidence 4555664 44689999984
No 335
>COG2047 Uncharacterized protein (ATP-grasp superfamily) [General function prediction only]
Probab=22.45 E-value=2e+02 Score=23.94 Aligned_cols=37 Identities=27% Similarity=0.507 Sum_probs=26.7
Q ss_pred CCCCCCHHHHHHHHHHHH------HHHHHHHHHHHHHHHHhHHHH
Q 034185 20 EDPKQSTADMTVFVQNLL------QQMQSRFQTMSDSIVTKIDEM 58 (102)
Q Consensus 20 ~dpkqs~~dLT~~Vq~LL------qQMQ~kFqtMS~~I~~RiDeM 58 (102)
-||| +...+-.++..+| ..+..|=..|- +|++||.||
T Consensus 196 vDpk-aAkaVL~vl~k~lgiEid~~~Le~RAke~E-~ii~k~~em 238 (258)
T COG2047 196 VDPK-AAKAVLEVLCKMLGIEIDMEALEERAKEME-EIIEKLKEM 238 (258)
T ss_pred cChH-HHHHHHHHHHHHhCceecHHHHHHHHHHHH-HHHHHHHHH
Confidence 4788 7777766666663 56777777765 888888888
No 336
>PRK12718 flgL flagellar hook-associated protein FlgL; Provisional
Probab=22.43 E-value=3.5e+02 Score=23.94 Aligned_cols=51 Identities=22% Similarity=0.249 Sum_probs=32.0
Q ss_pred HhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhHHHHHH
Q 034185 12 FWQDGHDSEDPKQSTADMTVFVQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQ 67 (102)
Q Consensus 12 ~~~~~~~s~dpkqs~~dLT~~Vq~LLqQMQ~kFqtMS~~I~~RiDeMg~RIDdLEk 67 (102)
-++....+.+|. ....+.+.+...|.+|..-+..++. .--+.|.|+..||.
T Consensus 402 ~aL~~p~~~~~~-~~~~~~~~l~~al~~ld~a~~~v~~----~ra~vGaRln~ld~ 452 (510)
T PRK12718 402 GALDTPISGDPQ-AAAALANTLATANKKLNLSLDNVLT----VQASVGARLNELEA 452 (510)
T ss_pred HHHhCCCCCChH-HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhHHHHHHHH
Confidence 344443343442 2355777888888888888877762 22677777777764
No 337
>TIGR01834 PHA_synth_III_E poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit. This model represents the PhaE subunit of the heterodimeric class (class III) of polymerase for poly(R)-hydroxyalkanoic acids (PHAs), carbon and energy storage polymers of many bacteria. The most common PHA is polyhydroxybutyrate but about 150 different constituent hydroxyalkanoic acids (HAs) have been identified in various species. This model must be designated subfamily to indicate the heterogeneity of PHAs.
Probab=22.33 E-value=1.2e+02 Score=25.45 Aligned_cols=27 Identities=22% Similarity=0.496 Sum_probs=23.0
Q ss_pred HHHHHhHHHHhhhHHHHHHHHHHHHHh
Q 034185 49 DSIVTKIDEMGNRINELEQSINDLRAE 75 (102)
Q Consensus 49 ~~I~~RiDeMg~RIDdLEksI~dLm~q 75 (102)
+.+-.||.|.=+|++.|+|.|.+|-.+
T Consensus 292 De~~krL~ELrR~vr~L~k~l~~l~~~ 318 (320)
T TIGR01834 292 DEAHQRIQQLRREVKSLKKRLGDLEAN 318 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 577789999999999999999888654
No 338
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=22.30 E-value=5.4e+02 Score=22.61 Aligned_cols=24 Identities=17% Similarity=0.425 Sum_probs=16.6
Q ss_pred HhHHHHhhhHHHHHHHHHHHHHhh
Q 034185 53 TKIDEMGNRINELEQSINDLRAEM 76 (102)
Q Consensus 53 ~RiDeMg~RIDdLEksI~dLm~qa 76 (102)
..++....+|++++++|..|-.|-
T Consensus 87 ~~l~~~~~~I~~~~~~l~~l~~q~ 110 (420)
T COG4942 87 DDLKKLRKQIADLNARLNALEVQE 110 (420)
T ss_pred hHHHHHHhhHHHHHHHHHHHHHHH
Confidence 345667778888888887776553
No 339
>PRK07739 flgK flagellar hook-associated protein FlgK; Validated
Probab=22.17 E-value=5.1e+02 Score=22.28 Aligned_cols=40 Identities=20% Similarity=0.413 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHhh
Q 034185 37 LQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDLRAEM 76 (102)
Q Consensus 37 LqQMQ~kFqtMS~~I~~RiDeMg~RIDdLEksI~dLm~qa 76 (102)
++++...++.+-.++-..|...=.+|+.|=+.|++|-.+.
T Consensus 155 ~n~~~~~L~~~~~~~~~~i~~~V~~iN~ll~~Ia~LN~~I 194 (507)
T PRK07739 155 FNYLSQSLTDIQNDLKSEIDVTVKEINSLASQISDLNKQI 194 (507)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556666666666777777777777777777777776654
No 340
>PF05121 GvpK: Gas vesicle protein K ; InterPro: IPR007805 Gas vesicles are intracellular, protein-coated, and hollow organelles found in cyanobacteria and halophilic archaea. They are permeable to ambient gases by diffusion and provide buoyancy, enabling cells to move upwards in liquid to access oxygen and/or light. Proteins containing this domain are involved in the formation of gas vesicles [].; GO: 0031412 gas vesicle organization
Probab=22.16 E-value=2.9e+02 Score=19.41 Aligned_cols=57 Identities=19% Similarity=0.482 Sum_probs=39.2
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------HHHHhhhHHHHHHHHHHHHHhhCCCC
Q 034185 21 DPKQSTADMTVFVQNLLQQMQSRFQTMSDSIVTK----------IDEMGNRINELEQSINDLRAEMGVEG 80 (102)
Q Consensus 21 dpkqs~~dLT~~Vq~LLqQMQ~kFqtMS~~I~~R----------iDeMg~RIDdLEksI~dLm~qaG~e~ 80 (102)
||...-+.|...|=++++=+. |-|-.|.+.| |+.+|.-+-.||..|.+|-..-|++.
T Consensus 6 d~~~v~~gL~~LVLtvVELLR---qlmErQAiRRme~G~Lse~qiErlG~tLm~Le~~~~~l~~~~gl~~ 72 (88)
T PF05121_consen 6 DPDNVERGLARLVLTVVELLR---QLMERQAIRRMEAGSLSEEQIERLGETLMKLEEAMEELCERFGLTP 72 (88)
T ss_pred ChHHHhccHHHHHHHHHHHHH---HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCH
Confidence 344334466666665554443 2344566666 56789999999999999999999874
No 341
>cd01107 HTH_BmrR Helix-Turn-Helix DNA binding domain of the BmrR transcription regulator. Helix-turn-helix (HTH) multidrug-efflux transporter transcription regulator, BmrR and YdfL of Bacillus subtilis, and related proteins; N-terminal domain. Bmr is a membrane protein which causes the efflux of a variety of toxic substances and antibiotics. BmrR is comprised of two distinct domains that harbor a regulatory (effector-binding) site and an active (DNA-binding) site. The conserved N-terminal domain contains a winged HTH motif that mediates DNA binding, while the C-terminal domain binds coactivating, toxic compounds. BmrR shares the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.
Probab=22.14 E-value=2.5e+02 Score=18.82 Aligned_cols=28 Identities=21% Similarity=0.361 Sum_probs=18.4
Q ss_pred HHHHHHHhHHHHhhhHHHHHHHHHHHHH
Q 034185 47 MSDSIVTKIDEMGNRINELEQSINDLRA 74 (102)
Q Consensus 47 MS~~I~~RiDeMg~RIDdLEksI~dLm~ 74 (102)
...-+-.++.++-.+|.+|+..+..|..
T Consensus 76 ~~~~l~~~~~~l~~~i~~l~~~~~~l~~ 103 (108)
T cd01107 76 LRKLLREKLAELEAEIEELQRILRLLED 103 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556777777777777777766554
No 342
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=22.13 E-value=2.1e+02 Score=24.21 Aligned_cols=43 Identities=16% Similarity=0.329 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH---HhHHHHhhhHHHHHHHHHHHHHh
Q 034185 33 VQNLLQQMQSRFQTMSDSIV---TKIDEMGNRINELEQSINDLRAE 75 (102)
Q Consensus 33 Vq~LLqQMQ~kFqtMS~~I~---~RiDeMg~RIDdLEksI~dLm~q 75 (102)
+++.|.+||...+.|+..|- +-+--||-.|-+||+.|++|=..
T Consensus 110 h~ssIS~Lqs~v~~lsTdvsNLksdVSt~aL~ItdLe~RV~~LEs~ 155 (326)
T PF04582_consen 110 HSSSISDLQSSVSALSTDVSNLKSDVSTQALNITDLESRVKALESG 155 (326)
T ss_dssp --------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hhhhHHHHHHhhhhhhhhhhhhhhhhhhhcchHhhHHHHHHHHhcC
Confidence 45567888888888887665 34566777888888888887553
No 343
>PF15145 DUF4577: Domain of unknown function (DUF4577)
Probab=22.04 E-value=46 Score=24.91 Aligned_cols=11 Identities=27% Similarity=0.724 Sum_probs=7.2
Q ss_pred HhHHHHhhhHH
Q 034185 53 TKIDEMGNRIN 63 (102)
Q Consensus 53 ~RiDeMg~RID 63 (102)
.||||+|+|+-
T Consensus 90 nkMddvSrRL~ 100 (128)
T PF15145_consen 90 NKMDDVSRRLT 100 (128)
T ss_pred chHHHHHHHHH
Confidence 56777777743
No 344
>PF11464 Rbsn: Rabenosyn Rab binding domain; InterPro: IPR021565 Rabenosyn-5 (Rbsn) is a multivalent effector with interacts with the Rab family.Rsbn contains distinct Rab4 and Rab5 binding sites within residues 264-500 and 627-784 respectively []. Rab proteins are GTPases involved in the regulation of all stages of membrane trafficking []. ; PDB: 1Z0K_B 1YZM_A 1Z0J_B.
Probab=22.04 E-value=96 Score=19.04 Aligned_cols=19 Identities=32% Similarity=0.678 Sum_probs=12.8
Q ss_pred HhHHHHhhhHHHHHHHHHHHHHh
Q 034185 53 TKIDEMGNRINELEQSINDLRAE 75 (102)
Q Consensus 53 ~RiDeMg~RIDdLEksI~dLm~q 75 (102)
+|.||+. -||+|+.+|-.+
T Consensus 19 ~r~dEV~----~L~~NL~EL~~e 37 (42)
T PF11464_consen 19 RRFDEVA----TLEENLRELQDE 37 (42)
T ss_dssp T-HHHHH----HHHHHHHHHHHH
T ss_pred cCcHHHH----HHHHHHHHHHHH
Confidence 5666654 488999888654
No 345
>cd00907 Bacterioferritin Bacterioferritin, ferritin-like diiron-binding domain. Bacterioferritins, also known as cytochrome b1, are members of a broad superfamily of ferritin-like diiron-carboxylate proteins. Similar to ferritin in architecture, Bfr forms an oligomer of 24 subunits that assembles to form a hollow sphere with 432 symmetry. Up to 12 heme cofactor groups (iron protoporphyrin IX or coproporphyrin III) are bound between dimer pairs. The role of the heme is unknown, although it may be involved in mediating iron-core reduction and iron release. Each subunit is composed of a four-helix bundle which carries a diiron ferroxidase center; it is here that initial oxidation of ferrous iron by molecular oxygen occurs, facilitating the detoxification of iron, protection against dioxygen and radical products, and storage of ferric-hydroxyphosphate at the core. Some bacterioferritins are composed of two subunit types, one conferring heme-binding ability (alpha) and the other (beta) best
Probab=21.97 E-value=1.9e+02 Score=19.66 Aligned_cols=26 Identities=23% Similarity=0.257 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHhHHHHhhhHHH
Q 034185 39 QMQSRFQTMSDSIVTKIDEMGNRINE 64 (102)
Q Consensus 39 QMQ~kFqtMS~~I~~RiDeMg~RIDd 64 (102)
.+...|...+..-...+|.++.||-+
T Consensus 38 ~~~~~f~~~a~ee~~Ha~~lae~i~~ 63 (153)
T cd00907 38 KLAERFRKESIEEMKHADKLIERILF 63 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555543
No 346
>KOG4057 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.82 E-value=72 Score=25.06 Aligned_cols=17 Identities=18% Similarity=0.407 Sum_probs=12.2
Q ss_pred hHHHHHHHHHHHHHhhC
Q 034185 61 RINELEQSINDLRAEMG 77 (102)
Q Consensus 61 RIDdLEksI~dLm~qaG 77 (102)
-|+++||+|...|.-||
T Consensus 13 Al~~iEkeI~~~mq~Ag 29 (180)
T KOG4057|consen 13 ALVTIEKEIDEMMQCAG 29 (180)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 36777777777777666
No 347
>PF04344 CheZ: Chemotaxis phosphatase, CheZ; InterPro: IPR007439 This family represents the bacterial chemotaxis phosphatase, CheZ. This protein forms a dimer characterised by a long four-helix bundle, composed of two helices from each monomer. CheZ dephosphorylates CheY in a reaction that is essential to maintain a continuous chemotactic response to environmental changes. It is thought that CheZ's conserved residue Gln 147 orientates a water molecule for nucleophilic attack at the CheY active site. ; GO: 0003824 catalytic activity, 0050920 regulation of chemotaxis, 0009288 bacterial-type flagellum; PDB: 1KMI_Z 2FMK_B 2PMC_F.
Probab=21.79 E-value=3.8e+02 Score=20.64 Aligned_cols=31 Identities=6% Similarity=0.287 Sum_probs=16.3
Q ss_pred HHHHHHHHHHhHHHHhhhHHHHHHHHHHHHH
Q 034185 44 FQTMSDSIVTKIDEMGNRINELEQSINDLRA 74 (102)
Q Consensus 44 FqtMS~~I~~RiDeMg~RIDdLEksI~dLm~ 74 (102)
|..+..++..-+.++....+.+...+.++|.
T Consensus 95 ~~~l~~~~~~~l~~~~~~~~~~~~~l~eIm~ 125 (214)
T PF04344_consen 95 FRELAHETDAFLQQVEENAQQLRAQLTEIMM 125 (214)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 4444445555555555555555555555554
No 348
>smart00808 FABD F-actin binding domain (FABD). FABD is the F-actin binding domain of Bcr-Abl and its cellular counterpart c-Abl. The Bcr-Abl tyrosine kinase causes different forms of leukemia in humans. Depending on its position within the cell, Bcr-Abl differentially affects cellular growth. The FABD forms a compact left-handed four-helix bundle in solution.
Probab=21.76 E-value=1.2e+02 Score=22.61 Aligned_cols=14 Identities=36% Similarity=0.596 Sum_probs=7.0
Q ss_pred HHHHHHHHHHhhCC
Q 034185 65 LEQSINDLRAEMGV 78 (102)
Q Consensus 65 LEksI~dLm~qaG~ 78 (102)
||-+...|...||.
T Consensus 87 lE~~~r~Lr~sa~~ 100 (126)
T smart00808 87 LELQLRELRISAGS 100 (126)
T ss_pred HHHHHHHHHhhccC
Confidence 44555555544443
No 349
>PRK09966 putative inner membrane diguanylate cyclase; Provisional
Probab=21.71 E-value=4e+02 Score=20.86 Aligned_cols=29 Identities=10% Similarity=0.140 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHhHHHHhhhHHHHH
Q 034185 38 QQMQSRFQTMSDSIVTKIDEMGNRINELE 66 (102)
Q Consensus 38 qQMQ~kFqtMS~~I~~RiDeMg~RIDdLE 66 (102)
.++-..|..|.++|-.++.+...+-+.|+
T Consensus 217 ~~L~~~~N~m~~~l~~~~~~l~~~~~~l~ 245 (407)
T PRK09966 217 HRFALDFNSLLDEMEEWQLRLQAKNAQLL 245 (407)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334455555555444444444444333
No 350
>PF05816 TelA: Toxic anion resistance protein (TelA); InterPro: IPR008863 This family consists of several prokaryotic TelA like proteins. TelA and KlA are associated with tellurite resistance [] and plasmid fertility inhibition [].
Probab=21.71 E-value=3.3e+02 Score=22.04 Aligned_cols=34 Identities=24% Similarity=0.365 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHH
Q 034185 35 NLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQS 68 (102)
Q Consensus 35 ~LLqQMQ~kFqtMS~~I~~RiDeMg~RIDdLEks 68 (102)
+-++.+-.||+++..+|=.=+.++-+--|.|.+.
T Consensus 84 ~~~~~~~~ky~sv~~qId~I~~~L~~~~~~L~~d 117 (333)
T PF05816_consen 84 NSLERYFAKYQSVQSQIDKIIAELESGQDELLRD 117 (333)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667777888887766543333333333333333
No 351
>TIGR02054 MerD mercuric resistence transcriptional repressor protein MerD. This model represents a transcriptional repressor protein of the MerR family (pfam00376) whose expression is regulated by the mercury-sensitive transcriptional activator, MerR. MerD has been shown to repress the transcription of the mer operon.
Probab=21.68 E-value=3e+02 Score=19.46 Aligned_cols=32 Identities=6% Similarity=0.142 Sum_probs=21.7
Q ss_pred HHHHHhHHHHhhhHHHHHHHHHHHHHhhCCCC
Q 034185 49 DSIVTKIDEMGNRINELEQSINDLRAEMGVEG 80 (102)
Q Consensus 49 ~~I~~RiDeMg~RIDdLEksI~dLm~qaG~e~ 80 (102)
......+++--.++..|++.+..+..-+|-+.
T Consensus 86 ~~~~~~i~~ki~~L~~l~~~L~~l~~~~~~~~ 117 (120)
T TIGR02054 86 AVLRQLVEARREALAALEVQLAAMPTAAAQHS 117 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 33444455555667778888999998887553
No 352
>COG2919 Septum formation initiator [Cell division and chromosome partitioning]
Probab=21.62 E-value=2.9e+02 Score=19.26 Aligned_cols=26 Identities=23% Similarity=0.440 Sum_probs=21.3
Q ss_pred HHHHhHHHHhhhHHHHHHHHHHHHHh
Q 034185 50 SIVTKIDEMGNRINELEQSINDLRAE 75 (102)
Q Consensus 50 ~I~~RiDeMg~RIDdLEksI~dLm~q 75 (102)
+--.+++.+..|-..||+.|.+|-.+
T Consensus 61 ~~~~e~~~L~~~~~~l~~ei~~L~dg 86 (117)
T COG2919 61 AQQAELEKLSARNTALEAEIKDLKDG 86 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 34577888999999999999998765
No 353
>PF12805 FUSC-like: FUSC-like inner membrane protein yccS
Probab=21.55 E-value=3.9e+02 Score=20.70 Aligned_cols=49 Identities=22% Similarity=0.424 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-----hHHHHhhhHHHHHHHHHHHHHh
Q 034185 27 ADMTVFVQNLLQQMQSRFQTMSDSIVT-----KIDEMGNRINELEQSINDLRAE 75 (102)
Q Consensus 27 ~dLT~~Vq~LLqQMQ~kFqtMS~~I~~-----RiDeMg~RIDdLEksI~dLm~q 75 (102)
.++-...+.+++++...-+.++..|.. ..++....+++|+.++..+..+
T Consensus 205 ~~~l~~~~~~l~~~a~~l~~ia~ai~~~~~~~~~~~l~~~l~~l~~~l~~~~~~ 258 (284)
T PF12805_consen 205 SDVLFRFQRLLEQLAQALRQIAQAILRGRPYHHRNRLKRALEALEESLEFLRQQ 258 (284)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCchHHHHHHHHHHHHHHHHHHh
Confidence 355567788888888888888888872 2466778899999999998887
No 354
>PRK06799 flgK flagellar hook-associated protein FlgK; Validated
Probab=21.49 E-value=5e+02 Score=21.92 Aligned_cols=39 Identities=13% Similarity=0.311 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHhh
Q 034185 38 QQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDLRAEM 76 (102)
Q Consensus 38 qQMQ~kFqtMS~~I~~RiDeMg~RIDdLEksI~dLm~qa 76 (102)
+++...++.+-..+-..|+..=.+|+.|=+.|++|-.+.
T Consensus 149 n~~~~~L~~~~~~~~~~i~~~V~~iN~ll~~Ia~LN~~I 187 (431)
T PRK06799 149 NRLAKGLDELEAQTTEDIEAHVNEFNRLAKSLAEANKKI 187 (431)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444445555555566666666666666666665543
No 355
>COG0013 AlaS Alanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=21.48 E-value=1.8e+02 Score=27.83 Aligned_cols=46 Identities=17% Similarity=0.390 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHh
Q 034185 29 MTVFVQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDLRAE 75 (102)
Q Consensus 29 LT~~Vq~LLqQMQ~kFqtMS~~I~~RiDeMg~RIDdLEksI~dLm~q 75 (102)
...--+.+|.++.+-+.. ..+++.|+...-.|+.+|||.|..|-.+
T Consensus 709 ~~~~~~~~l~~~a~~lk~-~~~~~~kv~~l~~~~k~lekel~~lk~~ 754 (879)
T COG0013 709 YLQEQEDLLKEIASLLKV-PPELLPKVERLLEELKELEKELERLKKK 754 (879)
T ss_pred HHHHHHHHHHHHHHHhCC-ChhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445678888888888 8889999999999999999999999773
No 356
>PHA02557 22 prohead core protein; Provisional
Probab=21.28 E-value=3.5e+02 Score=22.60 Aligned_cols=41 Identities=22% Similarity=0.465 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHH----HHHHHHHHhHHHHhhhHHHHHHHHHHHHH
Q 034185 34 QNLLQQMQSRFQ----TMSDSIVTKIDEMGNRINELEQSINDLRA 74 (102)
Q Consensus 34 q~LLqQMQ~kFq----tMS~~I~~RiDeMg~RIDdLEksI~dLm~ 74 (102)
+.+|..|.+=|- ++.++-+.-+++|-.+||+.|+-+.+|..
T Consensus 118 Es~l~GLK~lF~Ehnv~vpee~vdvV~em~~~L~E~e~~~~~l~~ 162 (271)
T PHA02557 118 ESFLGGLKELFVEHNVVVPEEKVDVVAEMEEELDEMEEELNELFE 162 (271)
T ss_pred HHHHHHHHHHHHHhCcCCcHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555554 33344444455555555555555555543
No 357
>cd00592 HTH_MerR-like Helix-Turn-Helix DNA binding domain of MerR-like transcription regulators. Helix-turn-helix (HTH) MerR-like transcription regulator, N-terminal domain. The MerR family transcription regulators have been shown to mediate responses to stress including exposure to heavy metals, drugs, or oxygen radicals in eubacterial and some archaeal species. They regulate transcription of multidrug/metal ion transporter genes and oxidative stress regulons by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=21.27 E-value=1.8e+02 Score=18.76 Aligned_cols=15 Identities=33% Similarity=0.525 Sum_probs=6.2
Q ss_pred HHhHHHHhhhHHHHH
Q 034185 52 VTKIDEMGNRINELE 66 (102)
Q Consensus 52 ~~RiDeMg~RIDdLE 66 (102)
..+++++-.+|+.|.
T Consensus 83 ~~~~~~l~~~~~~l~ 97 (100)
T cd00592 83 DEKLAELEEKIARLE 97 (100)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444444443
No 358
>PF04124 Dor1: Dor1-like family ; InterPro: IPR007255 Dor1 is involved in vesicle targeting to the yeast Golgi apparatus and complexes with a number of other trafficking proteins, which include Sec34 and Sec35 [].
Probab=21.18 E-value=4.4e+02 Score=21.17 Aligned_cols=50 Identities=20% Similarity=0.331 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHH-------H---HHHHHHHHHhHHHHhhhHHHHHHHHHHHHHh
Q 034185 26 TADMTVFVQNLLQQMQSR-------F---QTMSDSIVTKIDEMGNRINELEQSINDLRAE 75 (102)
Q Consensus 26 ~~dLT~~Vq~LLqQMQ~k-------F---qtMS~~I~~RiDeMg~RIDdLEksI~dLm~q 75 (102)
++.|..-...+.+|+|+- | ...+..|...++++..++++|.++|..|-..
T Consensus 16 p~~L~~~~~~l~~ql~~La~~~y~~fi~~~~~~~~i~~~~~~~~~~l~~L~~~l~~L~~~ 75 (338)
T PF04124_consen 16 PQSLSEEIASLDAQLQSLAFRNYKTFIDNAECSSDIRQELSSLSDSLDSLLDSLPELDEA 75 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666666677766653 3 2344556666677777777777777666543
No 359
>TIGR01795 CM_mono_cladeE monofunctional chorismate mutase, alpha proteobacterial type. The alpha proteobacterial members are trusted because the pathways of CM are evident and there is only one plausible CM in the genome. In S. coelicolor, however, there is another aparrent monofunctional CM.
Probab=21.16 E-value=1.3e+02 Score=20.39 Aligned_cols=23 Identities=13% Similarity=0.410 Sum_probs=16.6
Q ss_pred HhHHHHhhhHHHHHHHHHHHHHh
Q 034185 53 TKIDEMGNRINELEQSINDLRAE 75 (102)
Q Consensus 53 ~RiDeMg~RIDdLEksI~dLm~q 75 (102)
.+|+++=++||.|-+.|-+|+.+
T Consensus 3 ~~L~~lR~~ID~ID~qLv~LL~~ 25 (94)
T TIGR01795 3 AELKALRQSIDNIDAAVIHMLAE 25 (94)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777788888877777654
No 360
>PF12153 CAP18_C: LPS binding domain of CAP18 (C terminal); InterPro: IPR022746 This entry represents the cathlecidin antimicrobial C-terminal peptides. The C terminus is cleaved from the cathlecidin precursor, and is approximately 30 amino acids in length with a helical structure. This entry is found in association with PF00666 from PFAM. The C terminus peptides possess antimicrobial activity by virtue of their binding to bacterial lipopolysaccharides [][].; GO: 0042742 defense response to bacterium; PDB: 1LYP_A 2LMF_A 2FBU_H 2FBS_N 2K6O_A 2FCG_F.
Probab=21.11 E-value=1.8e+02 Score=16.65 Aligned_cols=23 Identities=17% Similarity=0.442 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHhHHHHhhhHHHH
Q 034185 43 RFQTMSDSIVTKIDEMGNRINEL 65 (102)
Q Consensus 43 kFqtMS~~I~~RiDeMg~RIDdL 65 (102)
.|+.--..|..++.-.|.||.|+
T Consensus 3 ~lrk~~eKigeklkkIGQkIKDf 25 (28)
T PF12153_consen 3 FLRKGGEKIGEKLKKIGQKIKDF 25 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566677888888889998876
No 361
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=21.07 E-value=4e+02 Score=20.64 Aligned_cols=48 Identities=19% Similarity=0.282 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHH-------HHHHHHHHHHhHHHHhhhHHHHHHHHHHHHH
Q 034185 27 ADMTVFVQNLLQQMQSR-------FQTMSDSIVTKIDEMGNRINELEQSINDLRA 74 (102)
Q Consensus 27 ~dLT~~Vq~LLqQMQ~k-------FqtMS~~I~~RiDeMg~RIDdLEksI~dLm~ 74 (102)
.++...-...+++.... .+.|..+.-.+.+++..+|.+||+.|.....
T Consensus 120 ~e~~~~~~~~~~~~~~~~~~G~~~r~~~i~~a~~~~~e~~~~l~~l~~ei~~~~~ 174 (176)
T PF12999_consen 120 AELGKEYREELEEEEEIYKEGLKIRQELIEEAKKKREELEKKLEELEKEIQAAKQ 174 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45554444444444433 3456666667778888999999998887654
No 362
>PF06037 DUF922: Bacterial protein of unknown function (DUF922); InterPro: IPR010321 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=20.99 E-value=1.6e+02 Score=21.86 Aligned_cols=31 Identities=16% Similarity=0.320 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHhhhHHHHHH
Q 034185 37 LQQMQSRFQTMSDSIVTKIDEMGNRINELEQ 67 (102)
Q Consensus 37 LqQMQ~kFqtMS~~I~~RiDeMg~RIDdLEk 67 (102)
-++|+...+...+.++.+.++-..+.|..|.
T Consensus 120 C~~l~~~~~~~~~~~l~~~~~~q~~fDr~E~ 150 (161)
T PF06037_consen 120 CQKLRAEANRRTDAILARHRQRQRDFDRVEQ 150 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhchhhh
Confidence 3556777888888888888888888888774
No 363
>PRK08871 flgK flagellar hook-associated protein FlgK; Validated
Probab=20.92 E-value=6.1e+02 Score=22.86 Aligned_cols=40 Identities=25% Similarity=0.343 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHhh
Q 034185 37 LQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDLRAEM 76 (102)
Q Consensus 37 LqQMQ~kFqtMS~~I~~RiDeMg~RIDdLEksI~dLm~qa 76 (102)
++.+..+++.+-..+-..|+..-.+|+.|=++|++|-.+.
T Consensus 146 fn~~~~~L~~~~~~vn~qi~~~V~~IN~l~~qIA~LN~qI 185 (626)
T PRK08871 146 LNDFHETVRQQKDVTNKKLDLGVERINQIALEIRDIHRLM 185 (626)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666667777777777778888888888887765
No 364
>PRK10935 nitrate/nitrite sensor protein NarQ; Provisional
Probab=20.91 E-value=4.6e+02 Score=21.25 Aligned_cols=50 Identities=14% Similarity=0.334 Sum_probs=0.0
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHH
Q 034185 22 PKQSTADMTVFVQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDL 72 (102)
Q Consensus 22 pkqs~~dLT~~Vq~LLqQMQ~kFqtMS~~I~~RiDeMg~RIDdLEksI~dL 72 (102)
+.....|+...... +++|+++++.+..++-..+++-..++.+.-+++..|
T Consensus 201 ~~~~~dE~g~l~~~-~~~m~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l 250 (565)
T PRK10935 201 DTTLPNELGLLAKA-FNQMSSELHKLYRSLEASVEEKTRKLTQANRSLEVL 250 (565)
T ss_pred CCCCCCHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 365
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=20.76 E-value=2e+02 Score=20.62 Aligned_cols=10 Identities=0% Similarity=0.285 Sum_probs=3.8
Q ss_pred HHHHHHHHHH
Q 034185 43 RFQTMSDSIV 52 (102)
Q Consensus 43 kFqtMS~~I~ 52 (102)
.+..+..+|.
T Consensus 23 el~~LK~~~~ 32 (110)
T PRK13169 23 ELGALKKQLA 32 (110)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 366
>PF10241 KxDL: Uncharacterized conserved protein; InterPro: IPR019371 This entry represents a conserved region of 80 residues which defines a family of short proteins. There is a characteristic KxDL motif towards the C terminus. The function is unknown.
Probab=20.74 E-value=2.7e+02 Score=18.56 Aligned_cols=44 Identities=20% Similarity=0.348 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHhhC
Q 034185 30 TVFVQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDLRAEMG 77 (102)
Q Consensus 30 T~~Vq~LLqQMQ~kFqtMS~~I~~RiDeMg~RIDdLEksI~dLm~qaG 77 (102)
..+.+.=|..++.+|..= ..-+-+|-+.+|..-+.|..|-..+.
T Consensus 38 n~~s~~rl~~~~~~f~~~----~~~l~~mK~DLd~i~krir~lk~kl~ 81 (88)
T PF10241_consen 38 NDLSQQRLAEARERFARH----TKLLKEMKKDLDYIFKRIRSLKAKLA 81 (88)
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455566666421 12234555666666666666655544
No 367
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.63 E-value=2.1e+02 Score=23.34 Aligned_cols=12 Identities=25% Similarity=0.612 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHH
Q 034185 37 LQQMQSRFQTMS 48 (102)
Q Consensus 37 LqQMQ~kFqtMS 48 (102)
|.+||.|-..|+
T Consensus 65 l~~l~g~i~~L~ 76 (262)
T COG1729 65 LRQLQGKIEELR 76 (262)
T ss_pred HHHHHhhHHHHH
Confidence 344444444444
No 368
>PRK14127 cell division protein GpsB; Provisional
Probab=20.62 E-value=3.3e+02 Score=19.47 Aligned_cols=49 Identities=10% Similarity=0.325 Sum_probs=37.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHH
Q 034185 25 STADMTVFVQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDLRA 74 (102)
Q Consensus 25 s~~dLT~~Vq~LLqQMQ~kFqtMS~~I~~RiDeMg~RIDdLEksI~dLm~ 74 (102)
++.|+-.|++.+.+.++. |..--..+-.++..+-.+|++++..+...-.
T Consensus 24 d~~EVD~FLd~V~~dye~-l~~e~~~Lk~e~~~l~~~l~e~~~~~~~~~~ 72 (109)
T PRK14127 24 DQDEVDKFLDDVIKDYEA-FQKEIEELQQENARLKAQVDELTKQVSVGAS 72 (109)
T ss_pred CHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Confidence 468999999999887765 4444556677888888889999888886533
No 369
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=20.62 E-value=5.3e+02 Score=21.88 Aligned_cols=47 Identities=13% Similarity=0.166 Sum_probs=23.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHH
Q 034185 25 STADMTVFVQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDL 72 (102)
Q Consensus 25 s~~dLT~~Vq~LLqQMQ~kFqtMS~~I~~RiDeMg~RIDdLEksI~dL 72 (102)
+..++.++.+.+-+|+..--..+ ..+-.++.++-.+|+.|++.++.|
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~l~~~l~~l 171 (525)
T TIGR02231 125 DLKEWFQAFDFNGSEIERLLTED-REAERRIRELEKQLSELQNELNAL 171 (525)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 56666666666655554333222 233344444444444444444443
No 370
>PRK08032 fliD flagellar capping protein; Reviewed
Probab=20.55 E-value=1.9e+02 Score=24.56 Aligned_cols=21 Identities=14% Similarity=0.377 Sum_probs=9.3
Q ss_pred HHHhHHHHhhhHHHHHHHHHH
Q 034185 51 IVTKIDEMGNRINELEQSIND 71 (102)
Q Consensus 51 I~~RiDeMg~RIDdLEksI~d 71 (102)
+-.+|+++-+||++||..|..
T Consensus 411 l~~~i~~l~~~i~~~~~rl~~ 431 (462)
T PRK08032 411 VNKTLKKLTKQYNAVSDSIDA 431 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444443
No 371
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=20.42 E-value=3.3e+02 Score=24.11 Aligned_cols=36 Identities=6% Similarity=0.314 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHhh
Q 034185 37 LQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDLRAEM 76 (102)
Q Consensus 37 LqQMQ~kFqtMS~~I~~RiDeMg~RIDdLEksI~dLm~qa 76 (102)
...|-+||.+ +...++.+|.+|+...++.+..|.+.
T Consensus 375 a~~Lydkl~~----f~~~~~klG~~L~~a~~~y~~A~~~L 410 (475)
T PRK10361 375 ASKLYDKMRL----FVDDMSAIGQSLDKAQDNYRQAMKKL 410 (475)
T ss_pred HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455533 34778899999999988888876544
No 372
>PRK07075 isochorismate-pyruvate lyase; Reviewed
Probab=20.24 E-value=1.5e+02 Score=20.26 Aligned_cols=23 Identities=22% Similarity=0.394 Sum_probs=17.9
Q ss_pred HhHHHHhhhHHHHHHHHHHHHHh
Q 034185 53 TKIDEMGNRINELEQSINDLRAE 75 (102)
Q Consensus 53 ~RiDeMg~RIDdLEksI~dLm~q 75 (102)
..|+++=++||+|-..|-+|+++
T Consensus 8 ~~L~~lR~~ID~ID~~iv~LL~e 30 (101)
T PRK07075 8 TGLDDIREAIDRLDRDIIAALGR 30 (101)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Confidence 34777888888888888888765
No 373
>PF04091 Sec15: Exocyst complex subunit Sec15-like ; InterPro: IPR007225 Sec15 is a component of the exocyst complex involved in the docking of exocystic vesicles with a fusion site on the plasma membrane. The exocyst complex is composed of Sec3, Sec5, Sec6, Sec8, Sec10, Sec15, Exo70 and Exo84.; GO: 0006904 vesicle docking involved in exocytosis, 0000145 exocyst; PDB: 2A2F_X.
Probab=20.23 E-value=1.1e+02 Score=24.67 Aligned_cols=43 Identities=16% Similarity=0.395 Sum_probs=24.5
Q ss_pred hhcCCCCCCCCCCHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHhH
Q 034185 13 WQDGHDSEDPKQSTADMTVFVQNLLQQM-------------QSRFQTMSDSIVTKI 55 (102)
Q Consensus 13 ~~~~~~s~dpkqs~~dLT~~Vq~LLqQM-------------Q~kFqtMS~~I~~Ri 55 (102)
|+..-..+.|.....||+.|+++++... -.-|+.+|..|+.-+
T Consensus 168 W~~~~~~~~ps~yi~dli~fL~~~f~s~l~~LP~~v~~~~~~~a~~his~~l~~~L 223 (311)
T PF04091_consen 168 WTPTEPPGEPSDYINDLIQFLETTFSSTLTNLPPSVKQLVYFSACDHISESLLDLL 223 (311)
T ss_dssp --------S--HHHHHHHHHHHHHHHTTTTTSH-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred eecCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6667777778878899999999998553 123667777777666
No 374
>PHA00442 host recBCD nuclease inhibitor
Probab=20.20 E-value=1.5e+02 Score=19.63 Aligned_cols=26 Identities=23% Similarity=0.358 Sum_probs=18.4
Q ss_pred HHHHhhhHHHHHHHHH--HHHHhhCCCC
Q 034185 55 IDEMGNRINELEQSIN--DLRAEMGVEG 80 (102)
Q Consensus 55 iDeMg~RIDdLEksI~--dLm~qaG~e~ 80 (102)
-.||..-||.|||... +-+..+||++
T Consensus 15 wnd~q~yidsLek~~~~L~~Lea~GVDN 42 (59)
T PHA00442 15 WNDMQGYIDSLEKDNEFLKALRACGVDN 42 (59)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHcCCcc
Confidence 3688888999988654 3456677765
No 375
>PTZ00464 SNF-7-like protein; Provisional
Probab=20.14 E-value=4.3e+02 Score=20.62 Aligned_cols=19 Identities=21% Similarity=0.356 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHhhCCCCC
Q 034185 63 NELEQSINDLRAEMGVEGS 81 (102)
Q Consensus 63 DdLEksI~dLm~qaG~e~~ 81 (102)
|+||..+.+|-.+.-.+..
T Consensus 160 dELe~ELe~Le~e~~~e~~ 178 (211)
T PTZ00464 160 DEMLGELDALDFDMEKEAD 178 (211)
T ss_pred HHHHHHHHHHHHHHhcccc
Confidence 6788888888777533333
No 376
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=20.13 E-value=3.1e+02 Score=19.02 Aligned_cols=49 Identities=12% Similarity=0.352 Sum_probs=34.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHhhC
Q 034185 25 STADMTVFVQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDLRAEMG 77 (102)
Q Consensus 25 s~~dLT~~Vq~LLqQMQ~kFqtMS~~I~~RiDeMg~RIDdLEksI~dLm~qaG 77 (102)
+..|-..+++.=+..+...-..+. ..|.+...+++.+.+-+..+..++|
T Consensus 91 ~~~eA~~~l~~~~~~l~~~~~~l~----~~l~~~~~~~~~~~~~l~~l~~~~~ 139 (140)
T PRK03947 91 DLDEAIEILDKRKEELEKALEKLE----EALQKLASRIAQLAQELQQLQQEAA 139 (140)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 466667777776766666665544 5566777788888888888887765
No 377
>PHA02675 ORF104 fusion protein; Provisional
Probab=20.11 E-value=3.3e+02 Score=19.35 Aligned_cols=38 Identities=29% Similarity=0.506 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHH
Q 034185 33 VQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDLRA 74 (102)
Q Consensus 33 Vq~LLqQMQ~kFqtMS~~I~~RiDeMg~RIDdLEksI~dLm~ 74 (102)
|+.=|-.+...|++ |+..--+.+.|||-||..+.-|..
T Consensus 35 le~RL~~L~k~~~~----i~~cC~~~~~~L~RLE~H~ETLRk 72 (90)
T PHA02675 35 VEERLVSLLDSYKT----ITDCCRETGARLDRLERHLETLRE 72 (90)
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444566655 445555677778888877766654
No 378
>PF10559 Plug_translocon: Plug domain of Sec61p; InterPro: IPR019561 The Sec61/SecY translocon mediates translocation of proteins across the membrane and integration of membrane proteins into the lipid bilayer. The structure of the translocon revealed a plug domain blocking the pore on the lumenal side. The plug is unlikely to be important for sealing the translocation pore in yeast but it plays a role in stabilising Sec61p during translocon formation. The domain runs from residues 52-74 []. ; PDB: 2YXR_A 1RHZ_A 3KCR_A 3DKN_A 2YXQ_A 1RH5_A 3BO1_A 3BO0_A 2WWA_A 2WW9_A ....
Probab=20.03 E-value=44 Score=19.32 Aligned_cols=19 Identities=32% Similarity=0.378 Sum_probs=14.4
Q ss_pred hhchhhhHHhhcCCCCCCC
Q 034185 4 LICSNWLLFWQDGHDSEDP 22 (102)
Q Consensus 4 ~~~~~~~~~~~~~~~s~dp 22 (102)
++|+|--||++.+..+.||
T Consensus 4 l~ls~ipLyG~~~~~~~D~ 22 (35)
T PF10559_consen 4 LFLSQIPLYGLQSASSSDP 22 (35)
T ss_dssp HHHHHSB-STSTTTTSSCC
T ss_pred EEeeCCccccccCCCcCCH
Confidence 6899999999976666666
Done!