Query 034185
Match_columns 102
No_of_seqs 100 out of 147
Neff 3.2
Searched_HMMs 29240
Date Mon Mar 25 18:19:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034185.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034185hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ci9_A Heat shock factor-bindi 99.9 1.4E-27 4.7E-32 148.9 5.1 48 22-70 1-48 (48)
2 2bez_C E2 glycoprotein; coiled 95.9 0.018 6.2E-07 38.7 5.4 34 30-67 43-76 (77)
3 3swf_A CGMP-gated cation chann 94.2 0.45 1.5E-05 31.6 8.4 51 25-75 4-54 (74)
4 3swy_A Cyclic nucleotide-gated 93.8 0.23 7.7E-06 30.2 5.9 44 26-69 3-46 (46)
5 1wyy_A E2 glycoprotein; membra 93.5 0.14 4.8E-06 37.9 5.5 41 30-74 56-98 (149)
6 2pnv_A Small conductance calci 92.0 0.21 7.2E-06 30.0 3.8 35 33-71 7-41 (43)
7 2ieq_A S glycoprotein, spike g 90.5 0.12 4E-06 36.7 1.9 46 28-74 40-90 (109)
8 1aq5_A Matrilin-1, CMP, cartil 89.9 0.84 2.9E-05 28.0 5.2 24 46-69 23-46 (47)
9 2pnv_A Small conductance calci 89.3 0.72 2.5E-05 27.6 4.5 36 40-75 3-38 (43)
10 3rk6_A Polyadenylate-binding p 86.8 1.4 4.8E-05 33.0 5.8 54 24-77 14-70 (234)
11 3n06_A Prolactin, PRL; PH depe 86.6 7.1 0.00024 28.3 9.3 54 25-78 63-126 (186)
12 1zva_A E2 glycoprotein; membra 86.0 0.75 2.5E-05 30.9 3.5 37 30-69 13-52 (77)
13 1pzq_A Erythronolide synthase; 84.7 0.28 9.6E-06 31.3 0.9 23 57-79 9-31 (60)
14 3nmd_A CGMP dependent protein 84.3 3.9 0.00013 26.8 6.3 53 16-76 11-63 (72)
15 3p8c_D Wiskott-aldrich syndrom 83.7 1.9 6.4E-05 34.2 5.4 40 28-71 43-82 (279)
16 4gif_A Polycystic kidney disea 83.6 5 0.00017 24.3 6.1 39 25-68 5-43 (45)
17 3ci9_A Heat shock factor-bindi 83.2 3.6 0.00012 25.0 5.4 39 34-72 5-43 (48)
18 3iv1_A Tumor susceptibility ge 82.9 6.8 0.00023 25.9 7.1 46 29-74 5-67 (78)
19 1f6f_A Placental lactogen; 4-h 81.5 5.2 0.00018 29.6 6.8 53 25-77 78-140 (199)
20 1use_A VAsp, vasodilator-stimu 72.1 14 0.00047 22.4 5.7 31 25-55 5-35 (45)
21 2yru_A Steroid receptor RNA ac 70.4 3.6 0.00012 28.4 3.1 40 25-71 14-54 (118)
22 3hrn_A Transient receptor pote 70.1 18 0.00061 23.3 6.1 39 25-68 4-42 (64)
23 3p8c_E Probable protein brick1 69.4 21 0.00072 23.4 7.3 49 28-76 20-68 (75)
24 2er8_A Regulatory protein Leu3 69.1 2.1 7.1E-05 25.6 1.5 21 53-73 49-69 (72)
25 1jek_B ENV polyprotein; envelo 68.9 3.7 0.00013 23.8 2.4 18 60-77 7-24 (36)
26 3iyn_Q Protein IX, PIX, hexon- 68.6 6.6 0.00023 28.7 4.3 28 50-77 102-129 (140)
27 1t3j_A Mitofusin 1; coiled coi 68.4 5.1 0.00018 27.4 3.5 32 39-70 33-64 (96)
28 2yko_A LINE-1 ORF1P; RNA-bindi 67.8 3.6 0.00012 32.0 2.9 24 53-76 27-50 (233)
29 3qne_A Seryl-tRNA synthetase, 66.3 26 0.00089 29.3 8.0 58 34-91 46-121 (485)
30 2fxo_A Myosin heavy chain, car 66.0 22 0.00075 24.2 6.4 24 52-75 82-105 (129)
31 1lwu_B Fibrinogen beta chain; 65.9 7.3 0.00025 31.0 4.4 48 29-76 7-58 (323)
32 3te3_A Polycystic kidney disea 65.8 5.2 0.00018 23.5 2.7 19 58-76 12-30 (39)
33 2zvf_A Alanyl-tRNA synthetase; 65.3 6.3 0.00022 27.0 3.5 43 33-75 12-54 (171)
34 2yo3_A General control protein 65.2 37 0.0013 26.9 8.3 55 16-71 191-255 (268)
35 1sfc_A VAMP 2, protein (synapt 63.3 26 0.0009 23.0 6.2 20 57-76 55-74 (96)
36 2dq0_A Seryl-tRNA synthetase; 62.4 42 0.0014 27.3 8.4 59 34-92 44-120 (455)
37 4gif_A Polycystic kidney disea 62.1 6.4 0.00022 23.8 2.7 18 59-76 13-30 (45)
38 2ba2_A D12_ORF131, hypothetica 61.9 3.9 0.00013 27.8 1.8 18 49-66 67-84 (85)
39 3pp5_A BRK1, protein brick1; t 60.3 33 0.0011 22.4 7.3 48 28-75 20-67 (73)
40 2lme_A Adhesin YADA; trimeric 59.9 9.3 0.00032 25.4 3.5 22 53-74 16-37 (105)
41 1zme_C Proline utilization tra 59.2 12 0.00039 21.9 3.5 21 55-75 46-66 (70)
42 1n7s_A Vesicle-associated memb 58.1 28 0.00094 20.9 6.2 22 55-76 27-48 (63)
43 2l3l_A Tubulin-specific chaper 56.6 12 0.00042 25.5 3.7 21 52-72 57-77 (111)
44 3mq9_A Bone marrow stromal ant 56.3 38 0.0013 26.3 6.9 24 54-77 398-421 (471)
45 3efg_A Protein SLYX homolog; x 55.9 4.5 0.00015 26.2 1.3 19 59-77 41-59 (78)
46 2cf7_A DPR; peroxide resistanc 55.9 28 0.00094 24.1 5.5 30 37-66 48-77 (165)
47 2z9e_A Cellulose synthase oper 55.6 51 0.0017 24.5 7.2 47 29-77 21-79 (167)
48 3aj1_A Cellulose synthase oper 55.0 35 0.0012 25.4 6.2 48 28-77 20-79 (167)
49 4a25_A DPS, ferritin DPS famil 54.8 15 0.00051 25.8 4.0 29 38-66 56-84 (169)
50 1hwt_C Protein (heme activator 54.1 4.4 0.00015 24.5 1.0 21 53-73 58-78 (81)
51 1t72_A Phosphate transport sys 53.5 52 0.0018 22.7 7.3 64 9-73 107-170 (227)
52 1ses_A Seryl-tRNA synthetase; 53.4 58 0.002 26.1 7.7 56 34-89 41-112 (421)
53 2dq3_A Seryl-tRNA synthetase; 53.3 42 0.0014 27.0 6.9 59 34-92 43-119 (425)
54 1wle_A Seryl-tRNA synthetase; 52.8 76 0.0026 26.4 8.5 38 52-89 122-164 (501)
55 1t72_A Phosphate transport sys 52.8 48 0.0017 22.8 6.4 48 28-75 22-69 (227)
56 3gwk_C SAG1039, putative uncha 52.5 34 0.0012 20.8 5.0 15 53-67 62-76 (98)
57 2gr7_A Adhesin; trimeric autot 52.3 33 0.0011 23.9 5.4 42 25-78 23-68 (129)
58 3emo_C HIA (adhesin); transmem 52.2 64 0.0022 23.3 7.1 48 18-78 50-101 (162)
59 1pyi_A Protein (pyrimidine pat 52.0 17 0.0006 22.4 3.6 19 54-72 49-67 (96)
60 1l4a_A Synaptobrevin; snare, s 51.9 22 0.00076 22.5 4.1 22 55-76 38-59 (80)
61 2gtl_O Extracellular hemoglobi 51.5 4.9 0.00017 30.6 1.1 21 51-71 10-30 (215)
62 2wuj_A Septum site-determining 51.4 19 0.00065 21.7 3.6 32 33-68 25-56 (57)
63 3uno_A Probable bacterioferrit 50.9 65 0.0022 23.0 7.7 36 51-90 142-177 (189)
64 4dnd_A Syntaxin-10, SYN10; str 50.9 51 0.0017 22.8 6.2 51 17-70 23-91 (130)
65 2xz3_A Maltose ABC transporter 50.9 36 0.0012 26.3 6.0 32 41-72 374-405 (463)
66 3uul_A Utrophin; spectrin repe 50.7 41 0.0014 20.6 5.3 19 51-69 83-101 (118)
67 1jcd_A Major outer membrane li 50.7 27 0.00091 21.3 4.2 24 51-74 9-32 (52)
68 3opc_A Uncharacterized protein 50.6 54 0.0019 22.0 7.6 50 30-79 17-74 (154)
69 3hd7_A Vesicle-associated memb 50.4 48 0.0017 21.4 6.2 17 59-75 32-48 (91)
70 3f42_A Protein HP0035; helicob 50.0 15 0.00051 24.6 3.2 20 33-52 8-27 (99)
71 2vs0_A Virulence factor ESXA; 49.8 39 0.0013 20.2 5.0 17 53-69 60-76 (97)
72 2fjc_A Antigen TPF1; mini ferr 49.0 19 0.00064 24.6 3.7 30 37-66 44-73 (156)
73 1sz7_A BET3 homolog, trafficki 48.9 21 0.00073 26.6 4.2 36 27-63 26-61 (200)
74 2chp_A MRGA, metalloregulation 48.5 19 0.00066 24.4 3.7 43 37-79 43-89 (153)
75 2bk6_A Non-heme iron-containin 47.8 20 0.00069 24.4 3.7 30 37-66 39-68 (156)
76 3iq1_A DPS family protein; csg 47.8 20 0.00068 24.5 3.7 31 37-67 49-79 (159)
77 1bgf_A STAT-4; transcription f 47.7 11 0.00038 26.2 2.4 40 10-49 35-74 (124)
78 3rmi_A Chorismate mutase prote 47.6 34 0.0012 22.9 4.8 30 46-75 5-34 (114)
79 3ghg_A Fibrinogen alpha chain; 47.3 44 0.0015 29.1 6.4 16 60-75 131-146 (562)
80 3ak8_A DNA protection during s 46.7 21 0.00072 24.7 3.7 29 38-66 60-88 (167)
81 1m1j_C Fibrinogen gamma chain; 46.3 98 0.0033 25.3 8.1 54 22-76 75-135 (409)
82 2xz3_A Maltose ABC transporter 46.1 51 0.0017 25.5 6.1 42 35-76 360-402 (463)
83 2yjk_A AFP, DPS; metal-binding 46.0 22 0.00075 24.4 3.7 30 37-66 51-80 (161)
84 1rtm_1 Mannose-binding protein 45.7 24 0.00082 22.9 3.7 25 51-75 2-26 (149)
85 2z90_A Starvation-inducible DN 45.6 22 0.00077 24.5 3.7 30 37-66 49-78 (161)
86 4eve_A Neutrophil-activating p 45.6 22 0.00076 24.7 3.7 44 37-80 53-100 (164)
87 1gl2_A Endobrevin; membrane pr 45.3 49 0.0017 20.0 6.2 19 58-76 35-53 (65)
88 2hn1_A CORA, magnesium and cob 45.2 25 0.00085 25.4 4.0 18 52-69 186-203 (266)
89 2d4y_A HAP1, flagellar HOOK-as 44.9 82 0.0028 25.0 7.3 40 37-76 80-119 (463)
90 3eh0_A UDP-3-O-[3-hydroxymyris 44.6 10 0.00035 28.9 1.9 24 49-72 317-340 (341)
91 1loi_A Cyclic 3',5'-AMP specif 44.6 4.2 0.00014 22.1 -0.2 14 2-15 7-21 (26)
92 3coq_A Regulatory protein GAL4 44.4 21 0.0007 21.6 3.0 21 54-74 46-66 (89)
93 3aad_A Transcription initiatio 44.4 75 0.0026 24.1 6.8 23 54-76 266-288 (292)
94 2c2j_A DNA-binding stress resp 44.3 22 0.00076 26.3 3.7 30 37-66 78-107 (211)
95 1lwu_C Fibrinogen gamma chain; 44.2 56 0.0019 26.0 6.2 28 50-77 30-57 (323)
96 3kwo_A Putative bacterioferrit 43.9 29 0.001 23.5 4.0 43 37-79 36-82 (152)
97 4akv_A Sorting nexin-33; trans 43.7 57 0.0019 25.7 6.2 38 37-74 325-363 (386)
98 2wlu_A DPS-like peroxide resis 43.6 25 0.00084 24.7 3.7 30 37-66 58-87 (175)
99 3lss_A Seryl-tRNA synthetase; 43.6 97 0.0033 25.8 7.8 36 56-91 114-154 (484)
100 4ioe_A Secreted protein ESXB; 43.5 36 0.0012 20.4 4.0 18 53-70 63-80 (93)
101 1kmi_Z CHEZ, chemotaxis protei 43.5 17 0.00058 27.1 2.9 34 44-80 141-174 (214)
102 1xwm_A PHOU, phosphate uptake 43.3 74 0.0025 21.8 6.1 49 27-75 17-65 (217)
103 3pmo_A UDP-3-O-[3-hydroxymyris 43.2 13 0.00046 28.9 2.4 23 50-72 340-362 (372)
104 2bjn_A TPC6, trafficking prote 43.0 11 0.00038 26.8 1.8 32 31-62 11-45 (160)
105 3oj5_A Ferritin family protein 42.6 78 0.0027 21.8 6.2 41 46-90 137-177 (189)
106 1aq5_A Matrilin-1, CMP, cartil 42.6 55 0.0019 19.8 4.9 33 26-62 14-46 (47)
107 1o9r_A Agrobacterium tumefacie 42.3 27 0.00093 23.8 3.7 30 37-66 48-77 (162)
108 2yw6_A DNA protection during s 42.3 26 0.00089 24.8 3.7 30 37-66 47-76 (183)
109 2nps_A VAMP-4, vesicle-associa 42.2 46 0.0016 20.6 4.5 43 26-76 10-52 (74)
110 1ji5_A DLP-1; dodecamer, four- 41.1 37 0.0013 21.9 4.0 31 37-67 32-62 (142)
111 1sum_B Phosphate transport sys 40.9 91 0.0031 21.9 6.6 48 28-75 18-65 (235)
112 2c41_A DPS family DNA-binding 40.8 36 0.0012 22.8 4.0 30 37-66 41-70 (158)
113 3b5n_A Synaptobrevin homolog 1 40.7 57 0.0019 19.4 6.2 18 59-76 29-46 (61)
114 4i0x_B ESAT-6-like protein MAB 40.6 63 0.0022 20.3 5.0 22 44-65 23-44 (103)
115 3okg_A Restriction endonucleas 39.6 63 0.0022 23.6 5.5 36 40-75 176-211 (412)
116 2yo3_A General control protein 39.4 1.1E+02 0.0037 24.2 7.1 41 35-75 205-245 (268)
117 1jig_A DLP-2; dodecamer, four- 39.4 40 0.0014 22.0 4.0 30 37-66 36-65 (146)
118 1n1q_A DPS protein; four-helix 39.2 40 0.0014 22.1 4.0 30 37-66 39-68 (149)
119 1xwm_A PHOU, phosphate uptake 39.2 86 0.0029 21.5 5.9 48 26-73 119-166 (217)
120 1cnt_1 CNTF, ciliary neurotrop 38.6 44 0.0015 25.4 4.5 50 34-83 88-137 (187)
121 1lwu_C Fibrinogen gamma chain; 38.2 77 0.0026 25.2 6.2 17 53-69 40-56 (323)
122 2i0m_A Phosphate transport sys 37.8 96 0.0033 21.2 6.9 49 28-76 18-66 (216)
123 3nvo_A Zinc transport protein 37.1 20 0.00068 25.7 2.4 32 31-69 147-178 (264)
124 2pyb_A NAPA, neutrophil activa 36.9 19 0.00064 24.4 2.1 30 37-66 36-65 (151)
125 4egw_A Magnesium transport pro 36.3 32 0.0011 25.1 3.5 15 32-46 157-171 (280)
126 1tjo_A Iron-rich DPSA-homolog 36.2 44 0.0015 23.3 4.0 29 38-66 61-89 (182)
127 2xgw_A Peroxide resistance pro 36.1 36 0.0012 24.7 3.7 29 38-66 75-103 (199)
128 2zqm_A Prefoldin beta subunit 36.0 82 0.0028 19.9 6.4 45 26-74 68-112 (117)
129 3dyt_A Sorting nexin-9; 3-heli 35.7 93 0.0032 24.1 6.2 38 37-74 305-343 (366)
130 1yf2_A Type I restriction-modi 35.6 94 0.0032 22.5 5.8 38 39-76 379-416 (425)
131 2bbh_A Divalent cation transpo 35.2 27 0.00092 25.1 2.8 14 34-47 174-187 (269)
132 1fzc_B Fibrin; blood coagulati 34.7 11 0.00038 29.9 0.8 25 52-76 36-60 (328)
133 2c2u_A DPS, DNA-binding stress 34.4 32 0.0011 25.2 3.2 30 37-66 91-120 (207)
134 2zdi_C Prefoldin subunit alpha 34.4 67 0.0023 21.9 4.7 32 42-73 19-53 (151)
135 2oqq_A Transcription factor HY 34.2 72 0.0025 19.0 4.1 25 51-75 8-32 (42)
136 2olt_A Hypothetical protein; s 33.9 1.2E+02 0.0041 21.2 6.4 49 26-74 122-178 (227)
137 3uun_A Dystrophin; triple heli 33.4 81 0.0028 19.1 5.6 19 51-69 83-101 (119)
138 1fxk_A Prefoldin; archaeal pro 33.2 89 0.0031 19.5 6.2 22 53-74 79-100 (107)
139 2w83_C C-JUN-amino-terminal ki 32.9 1.1E+02 0.0036 20.3 8.0 47 25-71 3-55 (77)
140 1huw_A Human growth hormone; 2 32.4 32 0.0011 25.1 2.9 53 25-77 71-129 (191)
141 2h8e_A Crossover junction endo 32.0 27 0.00092 23.0 2.2 17 62-78 71-87 (120)
142 3rrk_A V-type ATPase 116 kDa s 32.0 86 0.0029 23.5 5.3 22 53-74 113-137 (357)
143 2d5k_A DPS, DPS family protein 31.8 60 0.0021 21.7 4.0 29 38-66 39-67 (156)
144 3um3_B Charged multivesicular 31.5 1.2E+02 0.0041 20.5 8.0 42 33-75 8-54 (104)
145 1nfn_A Apolipoprotein E3; lipi 31.4 29 0.00099 25.1 2.5 27 22-48 22-48 (191)
146 1urq_A M-tomosyn isoform; tran 30.9 95 0.0032 19.1 6.2 43 26-76 6-48 (63)
147 3g67_A Methyl-accepting chemot 30.7 1.6E+02 0.0055 21.6 7.4 10 28-37 11-20 (213)
148 3efg_A Protein SLYX homolog; x 30.6 92 0.0032 19.8 4.6 22 54-75 43-64 (78)
149 1sig_A Sigma70, RNA polymerase 30.3 1.4E+02 0.0047 22.4 6.2 32 47-78 156-188 (339)
150 3mtu_E Head morphogenesis prot 30.3 65 0.0022 21.3 3.8 14 35-48 30-43 (77)
151 2c5k_T Syntaxin TLG1, T-snare 29.7 1.2E+02 0.0041 19.9 5.8 45 27-71 9-61 (95)
152 1m1j_B Fibrinogen beta chain; 29.6 2.3E+02 0.0078 23.7 7.9 25 52-76 174-198 (464)
153 2i0m_A Phosphate transport sys 29.6 1.3E+02 0.0046 20.4 5.8 48 26-73 119-166 (216)
154 3hnw_A Uncharacterized protein 29.6 92 0.0031 21.7 4.8 51 25-75 29-97 (138)
155 1woz_A 177AA long conserved hy 29.6 87 0.003 22.7 4.8 42 33-76 50-96 (177)
156 1gs9_A Apolipoprotein E, APOE4 29.0 36 0.0012 24.3 2.6 17 50-66 63-79 (165)
157 1nog_A Conserved hypothetical 28.6 93 0.0032 22.6 4.8 43 33-77 51-98 (177)
158 1sum_B Phosphate transport sys 28.6 1.1E+02 0.0037 21.5 5.0 48 25-72 118-165 (235)
159 1avy_A Fibritin, gpwac M; bact 28.3 1.3E+02 0.0044 19.8 5.2 25 50-74 19-43 (74)
160 2nrj_A HBL B protein; enteroto 28.3 1.6E+02 0.0054 23.0 6.4 32 44-75 160-191 (346)
161 3p8c_F ABL interactor 2; actin 28.2 1.7E+02 0.006 21.3 6.2 54 19-72 41-94 (159)
162 3s84_A Apolipoprotein A-IV; fo 28.0 1.9E+02 0.0064 22.0 6.6 49 25-73 199-247 (273)
163 3ajm_A Programmed cell death p 27.9 76 0.0026 24.4 4.4 32 44-75 99-137 (213)
164 2ovc_A Potassium voltage-gated 27.9 42 0.0014 18.9 2.2 19 53-71 10-28 (33)
165 2y7c_A Type-1 restriction enzy 27.8 73 0.0025 23.6 4.2 19 41-59 378-396 (464)
166 1ydx_A Type I restriction enzy 27.8 1.5E+02 0.005 22.0 5.8 38 39-76 355-392 (406)
167 2vxx_A Starvation induced DNA 27.3 76 0.0026 22.0 4.0 30 38-67 60-89 (192)
168 1p68_A De novo designed protei 27.3 1.5E+02 0.0051 20.2 5.7 52 23-74 27-94 (102)
169 1yzm_A FYVE-finger-containing 27.2 37 0.0013 20.8 2.0 19 53-75 25-43 (51)
170 3v1a_A Computational design, M 27.1 37 0.0013 20.5 2.0 19 53-75 24-42 (48)
171 3pp5_A BRK1, protein brick1; t 26.9 1.3E+02 0.0045 19.4 6.1 40 28-71 31-70 (73)
172 3lay_A Zinc resistance-associa 26.8 1.8E+02 0.0062 21.0 7.5 13 61-73 114-126 (175)
173 3t98_B Nucleoporin NUP58/NUP45 26.5 87 0.003 20.7 4.0 31 44-74 10-40 (93)
174 3cue_B Transport protein parti 26.5 58 0.002 25.8 3.6 37 26-63 59-95 (283)
175 2akf_A Coronin-1A; coiled coil 26.2 88 0.003 17.6 3.4 10 60-69 20-29 (32)
176 1yf2_A Type I restriction-modi 26.2 1.5E+02 0.005 21.5 5.5 37 40-76 170-206 (425)
177 3zrx_A AF1503 protein, osmolar 26.1 97 0.0033 17.6 5.0 17 27-43 40-56 (115)
178 2yko_A LINE-1 ORF1P; RNA-bindi 25.9 30 0.001 26.8 1.8 25 50-74 3-27 (233)
179 3na7_A HP0958; flagellar bioge 25.7 83 0.0029 23.1 4.2 25 52-76 96-120 (256)
180 3p8c_E Probable protein brick1 25.6 1.4E+02 0.0049 19.4 5.4 37 30-70 33-69 (75)
181 2iub_A CORA, divalent cation t 25.2 62 0.0021 24.8 3.5 23 33-55 182-204 (363)
182 2c0j_B R32611_2; palmitate; HE 25.2 50 0.0017 23.4 2.8 33 30-62 9-45 (160)
183 2e9x_C GINS complex subunit 3; 24.9 59 0.002 24.1 3.2 43 30-72 135-181 (219)
184 3pjs_K KCSA, voltage-gated pot 24.8 1.1E+02 0.0036 21.0 4.3 20 51-70 143-162 (166)
185 4i0x_B ESAT-6-like protein MAB 24.7 1.3E+02 0.0045 18.7 5.3 18 56-73 28-45 (103)
186 1ci6_A Transcription factor AT 24.7 1.2E+02 0.0042 18.3 5.4 21 53-73 37-57 (63)
187 1hs7_A Syntaxin VAM3; UP-and-D 24.6 1.5E+02 0.005 19.8 4.9 26 25-51 4-29 (97)
188 2nps_B Syntaxin 13, vesicle-as 24.5 1.2E+02 0.0042 18.3 5.5 36 34-73 12-47 (71)
189 1ecm_A Endo-oxabicyclic transi 24.4 55 0.0019 21.2 2.7 21 55-75 7-27 (109)
190 1x8y_A Lamin A/C; structural p 24.4 1.3E+02 0.0043 19.2 4.4 35 33-74 15-49 (86)
191 3p8c_D Wiskott-aldrich syndrom 24.1 2E+02 0.0067 22.6 6.2 43 33-76 34-80 (279)
192 3fkm_X Signaling protein; brom 24.1 29 0.00098 24.4 1.3 10 4-13 90-99 (166)
193 1buu_A Protein (mannose-bindin 24.0 86 0.003 20.9 3.7 9 61-69 31-39 (168)
194 3r2k_A Bacterioferritin, BFR; 23.8 75 0.0026 20.6 3.3 29 37-65 37-65 (154)
195 2a01_A Apolipoprotein A-I; fou 23.6 1.9E+02 0.0064 21.3 5.7 30 26-55 145-174 (243)
196 3mq1_A Mite allergen DER P 5; 23.5 80 0.0027 21.9 3.4 30 35-68 4-33 (103)
197 1deq_A Fibrinogen (alpha chain 23.5 1.9E+02 0.0066 24.0 6.3 35 41-75 108-149 (390)
198 3qks_A DNA double-strand break 23.4 44 0.0015 23.2 2.2 12 25-36 115-126 (203)
199 3zcc_A HAMP, osmolarity sensor 23.2 1.1E+02 0.0039 17.4 5.2 15 28-42 41-55 (114)
200 1szq_A 2-methylcitrate dehydra 23.1 94 0.0032 25.1 4.3 37 38-74 437-479 (483)
201 1ygt_A Cytoplasmic dynein ligh 23.1 1.1E+02 0.0037 20.0 3.9 19 22-40 8-26 (111)
202 2jmh_A BLO T 5, mite allergen 22.9 1.3E+02 0.0046 21.2 4.6 29 36-68 20-48 (119)
203 1dip_A Delta-sleep-inducing pe 22.9 1.7E+02 0.0059 19.4 7.5 28 52-79 21-48 (78)
204 2clb_A DPS-like protein; DI-ir 22.8 60 0.002 22.8 2.8 28 39-66 58-85 (188)
205 3r2v_A PB2 C-terminal subunit; 22.8 71 0.0024 24.5 3.3 36 17-52 43-79 (216)
206 2qqy_A Sigma B operon; dodecam 22.4 1.2E+02 0.0042 19.0 4.0 28 38-65 42-69 (149)
207 2gtl_O Extracellular hemoglobi 22.3 1.3E+02 0.0043 22.8 4.6 38 26-66 14-51 (215)
208 1mr1_C SKI oncogene, SKI, C-SK 22.3 90 0.0031 21.3 3.5 34 7-45 65-98 (99)
209 1wy1_A Hypothetical protein PH 22.2 1.2E+02 0.004 21.9 4.3 43 33-77 52-99 (172)
210 1rty_A YVQK protein; all alpha 22.1 1.2E+02 0.0042 22.2 4.5 42 33-76 56-104 (193)
211 1fxk_C Protein (prefoldin); ar 21.9 1.7E+02 0.0059 19.1 7.2 48 25-76 85-132 (133)
212 1m1j_A Fibrinogen alpha subuni 21.8 3.2E+02 0.011 23.4 7.4 37 39-75 104-147 (491)
213 2xhe_A UNC18; exocytosis, exoc 21.8 1.9E+02 0.0064 24.1 6.0 48 23-70 321-373 (650)
214 2y7c_A Type-1 restriction enzy 21.6 1.1E+02 0.0038 22.6 4.2 9 7-15 119-127 (464)
215 1z0j_B FYVE-finger-containing 21.6 48 0.0017 20.9 1.9 19 53-75 32-50 (59)
216 3hd7_B Syntaxin-1A; membrane p 21.5 1.8E+02 0.0061 19.1 5.5 33 37-73 30-62 (109)
217 2ve7_A Kinetochore protein HEC 21.2 85 0.0029 24.3 3.6 17 56-72 188-204 (315)
218 4dnd_A Syntaxin-10, SYN10; str 21.1 2.1E+02 0.0071 19.6 5.5 49 28-76 67-128 (130)
219 1z0k_B FYVE-finger-containing 21.0 54 0.0018 21.1 2.0 19 53-75 43-61 (69)
220 3he4_A Synzip6; heterodimeric 21.0 1.3E+02 0.0044 18.6 3.7 26 49-74 23-52 (56)
221 3g46_A Globin-1; oxygen transp 20.9 82 0.0028 20.8 3.0 31 46-77 68-98 (146)
222 2la2_A Cecropin, papiliocin; a 20.8 66 0.0022 18.8 2.2 15 50-64 3-17 (38)
223 2ld3_A Myosin VI; molecular mo 26.1 21 0.00072 23.5 0.0 20 56-75 31-50 (88)
224 3ci3_A Cobalamin adenosyltrans 20.7 97 0.0033 22.8 3.6 42 33-76 61-112 (194)
225 3mq9_A Bone marrow stromal ant 20.4 3E+02 0.01 21.2 7.8 15 60-74 443-457 (471)
226 2zhy_A ATP:COB(I)alamin adenos 20.4 1.4E+02 0.0049 21.7 4.5 42 33-76 58-103 (183)
227 3lay_A Zinc resistance-associa 20.4 2.5E+02 0.0085 20.3 7.4 38 37-74 91-134 (175)
228 2d8d_A Aroag, phospho-2-dehydr 20.3 97 0.0033 19.3 3.1 21 55-75 5-25 (90)
229 3uv4_A Second bromodomain of h 20.3 60 0.0021 22.7 2.4 23 53-75 125-147 (158)
230 2ieq_A S glycoprotein, spike g 20.2 2.3E+02 0.0078 19.7 5.3 44 31-78 11-54 (109)
231 1t3j_A Mitofusin 1; coiled coi 20.0 2.1E+02 0.0072 19.3 7.0 24 27-50 39-62 (96)
No 1
>3ci9_A Heat shock factor-binding protein 1; triple helix, nucleus, transcription; 1.80A {Homo sapiens}
Probab=99.94 E-value=1.4e-27 Score=148.93 Aligned_cols=48 Identities=54% Similarity=0.876 Sum_probs=42.9
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHH
Q 034185 22 PKQSTADMTVFVQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSIN 70 (102)
Q Consensus 22 pkqs~~dLT~~Vq~LLqQMQ~kFqtMS~~I~~RiDeMg~RIDdLEksI~ 70 (102)
|+ +++|||+|||+||+|||+||++||++|++||||||+|||+||+||+
T Consensus 1 p~-~~~dLt~~vq~LL~qmq~kFq~mS~~I~~riDdM~~RIDdLE~si~ 48 (48)
T 3ci9_A 1 PK-TVQDLTSVVQTLLQQMQDKFQTISDQIIGRIDDMSSRIDDLEKNIA 48 (48)
T ss_dssp CC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC----
T ss_pred CC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhcC
Confidence 55 9999999999999999999999999999999999999999999985
No 2
>2bez_C E2 glycoprotein; coiled coil, membrane fusion, severe acute respiratory syndrome, viral protein; 1.6A {Sars coronavirus} SCOP: h.3.3.1 PDB: 1zv8_A 1zvb_A
Probab=95.85 E-value=0.018 Score=38.74 Aligned_cols=34 Identities=21% Similarity=0.483 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhHHHHHH
Q 034185 30 TVFVQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQ 67 (102)
Q Consensus 30 T~~Vq~LLqQMQ~kFqtMS~~I~~RiDeMg~RIDdLEk 67 (102)
.+.+..|+.|++..|+.+| +-|.|.-.|+|.||+
T Consensus 43 ~~aL~~L~~qL~~NFgAIS----ssi~dIy~RLd~leA 76 (77)
T 2bez_C 43 AQALNTLVKQLSSNFGAIS----SVLNDILSRLDKVEA 76 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHH----HHHHHHHHHHHhhhc
Confidence 4567889999999999877 557899999999996
No 3
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=94.16 E-value=0.45 Score=31.55 Aligned_cols=51 Identities=12% Similarity=0.240 Sum_probs=41.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHh
Q 034185 25 STADMTVFVQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDLRAE 75 (102)
Q Consensus 25 s~~dLT~~Vq~LLqQMQ~kFqtMS~~I~~RiDeMg~RIDdLEksI~dLm~q 75 (102)
+..+-..-+++-|+.||.||..+-.+.-+-=--|-.||-.||+.+..+...
T Consensus 4 dlEEKv~~LE~sld~LQTrfARLLaEy~ssQ~KLKqRit~LE~~~~~~~~~ 54 (74)
T 3swf_A 4 GLEEKVTRMESSVDLLQTRFARILAEYESMQQKLKQRLTKVEKFLKPLIDT 54 (74)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCC
Confidence 456667778899999999999877777666667789999999999987654
No 4
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=93.83 E-value=0.23 Score=30.24 Aligned_cols=44 Identities=18% Similarity=0.290 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHH
Q 034185 26 TADMTVFVQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSI 69 (102)
Q Consensus 26 ~~dLT~~Vq~LLqQMQ~kFqtMS~~I~~RiDeMg~RIDdLEksI 69 (102)
..|-..-+++-|+.||.||..+-.+.-+-=--|-.||-.||+.+
T Consensus 3 lEekv~~Le~~ld~LqTr~ArLlae~~ssq~KlKqRit~lE~~v 46 (46)
T 3swy_A 3 LEEKVEQLGSSLDTLQTRFARLLAEYNATQMKMKQRLSQLESQV 46 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 45556678889999999999877776666667788999999763
No 5
>1wyy_A E2 glycoprotein; membrane fusion, severe acute respiratory syndrome, viral PR; 2.20A {Sars coronavirus} SCOP: h.3.3.1 PDB: 1wnc_A 2fxp_A
Probab=93.53 E-value=0.14 Score=37.94 Aligned_cols=41 Identities=22% Similarity=0.468 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHH--HHHHHH
Q 034185 30 TVFVQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQS--INDLRA 74 (102)
Q Consensus 30 T~~Vq~LLqQMQ~kFqtMS~~I~~RiDeMg~RIDdLEks--I~dLm~ 74 (102)
.+.+..|+.|++..|+.+| +-|.|.-.|+|.||+. |..|++
T Consensus 56 ~~aL~~l~~qL~~nFgAIS----ssi~dIy~rLd~leAdaQVDRLIt 98 (149)
T 1wyy_A 56 AQALNTLVKQLSSNFGAIS----SVLNDILSRLDKVEAEVQIDRLIT 98 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHHHHhhhHHH----HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4567889999999999877 5577999999999985 455555
No 6
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=91.96 E-value=0.21 Score=29.96 Aligned_cols=35 Identities=14% Similarity=0.351 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHH
Q 034185 33 VQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSIND 71 (102)
Q Consensus 33 Vq~LLqQMQ~kFqtMS~~I~~RiDeMg~RIDdLEksI~d 71 (102)
|-.|+..|++|= +.+-.||+-|..|+|+|..++..
T Consensus 7 mydlvsel~~r~----e~LE~Ri~~LE~KLd~L~~~l~a 41 (43)
T 2pnv_A 7 MYDMISDLNERS----EDFEKRIVTLETKLETLIGSIHA 41 (43)
T ss_dssp HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhh----HHHHHHHHHHHHHHHHHHHHHHc
Confidence 334444444443 33446666777777777666653
No 7
>2ieq_A S glycoprotein, spike glycoprotein, peplomer protein, E2; membrane fusion, virus entry, six-HEL bundle, viral protein; 1.75A {Human coronavirus}
Probab=90.49 E-value=0.12 Score=36.69 Aligned_cols=46 Identities=15% Similarity=0.212 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHH-----HHhhhHHHHHHHHHHHHH
Q 034185 28 DMTVFVQNLLQQMQSRFQTMSDSIVTKID-----EMGNRINELEQSINDLRA 74 (102)
Q Consensus 28 dLT~~Vq~LLqQMQ~kFqtMS~~I~~RiD-----eMg~RIDdLEksI~dLm~ 74 (102)
+....+..|++|+...|+..|..|- +|= +...|||.||+.-..|.+
T Consensus 40 ~q~~aLs~ll~QLn~NF~A~s~~lq-~~fn~t~lni~~elD~LEa~A~~l~~ 90 (109)
T 2ieq_A 40 QQGSALNHLTSQLRHNFQSGGRGSG-RGGNLTYLNLSSELKQLEAKTASLFQ 90 (109)
T ss_dssp HHHHHHHHHHCCC------------------CCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCCcchHHH-HHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 4556778888888999988776554 221 667788888888777765
No 8
>1aq5_A Matrilin-1, CMP, cartilage matrix protein; coiled-coil, heptad repeat, interchain disulfide bonds, oligomerization domain, trimer; NMR {Gallus gallus} SCOP: h.1.6.1
Probab=89.89 E-value=0.84 Score=27.97 Aligned_cols=24 Identities=25% Similarity=0.549 Sum_probs=17.5
Q ss_pred HHHHHHHHhHHHHhhhHHHHHHHH
Q 034185 46 TMSDSIVTKIDEMGNRINELEQSI 69 (102)
Q Consensus 46 tMS~~I~~RiDeMg~RIDdLEksI 69 (102)
+.-..+..|+++|+.||..||+.|
T Consensus 23 ~~l~~Lt~kL~~vt~rle~lEnrl 46 (47)
T 1aq5_A 23 ELINTLQQKLEAVAKRIEALENKI 46 (47)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhc
Confidence 333444567789999999999865
No 9
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=89.35 E-value=0.72 Score=27.58 Aligned_cols=36 Identities=17% Similarity=0.262 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHh
Q 034185 40 MQSRFQTMSDSIVTKIDEMGNRINELEQSINDLRAE 75 (102)
Q Consensus 40 MQ~kFqtMS~~I~~RiDeMg~RIDdLEksI~dLm~q 75 (102)
||+.--.|-..+-+|=+++-.||+.||..+.+|-.+
T Consensus 3 mQn~mydlvsel~~r~e~LE~Ri~~LE~KLd~L~~~ 38 (43)
T 2pnv_A 3 HMNIMYDMISDLNERSEDFEKRIVTLETKLETLIGS 38 (43)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 566666677788899999999999999999998765
No 10
>3rk6_A Polyadenylate-binding protein-interacting protein; heat fold, PABP, EIF4A, EIF3, translation regulator; 2.00A {Homo sapiens}
Probab=86.75 E-value=1.4 Score=32.96 Aligned_cols=54 Identities=11% Similarity=0.258 Sum_probs=38.9
Q ss_pred CCHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHhhC
Q 034185 24 QSTADMTVFVQNLLQQMQ---SRFQTMSDSIVTKIDEMGNRINELEQSINDLRAEMG 77 (102)
Q Consensus 24 qs~~dLT~~Vq~LLqQMQ---~kFqtMS~~I~~RiDeMg~RIDdLEksI~dLm~qaG 77 (102)
...++|...|..+|+.|- ++|+.++++|+.-+..--+..+.|+.=|.-++.+|=
T Consensus 14 ~~~~~l~r~v~~iLNkLT~~p~~f~~l~~~i~~~~~~~~~~~~~L~~vi~lIfekAi 70 (234)
T 3rk6_A 14 GRGSTLSEYVQDFLNHLTEQPGSFETEIEQFAETLNGCVTTDDALQELVELIYQQAT 70 (234)
T ss_dssp ----CHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHccCChhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Confidence 357899999999999999 899999999998654333345667776666666653
No 11
>3n06_A Prolactin, PRL; PH dependence, hematopoietic cytokine, hormone-hormone recep complex; 2.00A {Homo sapiens} PDB: 3nce_A 3mzg_A 3ncc_A 2q98_A 3d48_P 3ncb_A 3n0p_A 3ncf_A 1n9d_A 1rw5_A 3npz_A 3ew3_A
Probab=86.56 E-value=7.1 Score=28.32 Aligned_cols=54 Identities=11% Similarity=0.285 Sum_probs=42.7
Q ss_pred CHHHHHHHHHHHHH-------HHHHHHH---HHHHHHHHhHHHHhhhHHHHHHHHHHHHHhhCC
Q 034185 25 STADMTVFVQNLLQ-------QMQSRFQ---TMSDSIVTKIDEMGNRINELEQSINDLRAEMGV 78 (102)
Q Consensus 25 s~~dLT~~Vq~LLq-------QMQ~kFq---tMS~~I~~RiDeMg~RIDdLEksI~dLm~qaG~ 78 (102)
+..||..++-.||+ .++.-+. ..++.|+.|.-|+..++.+|++-|..|+.+.+.
T Consensus 63 s~~~LL~~~l~Ll~SW~~PL~~L~~~~~~l~~~~~~il~Kakei~e~~~~L~egi~~i~~~~~~ 126 (186)
T 3n06_A 63 NQKDFLSLIVSILRSWNEPLYHLVTEVRGMQEAPEAILSKAVEIEEQTKRLLERMELIVSQVHP 126 (186)
T ss_dssp CHHHHHHHHHHHHHHTHHHHHHHHHHHHTSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 46788888777764 4444443 346899999999999999999999999998854
No 12
>1zva_A E2 glycoprotein; membrane fusion, virus entry, coiled C conformational change, viral protein; 1.50A {Sars coronavirus} SCOP: h.3.3.1 PDB: 1zv8_B
Probab=85.97 E-value=0.75 Score=30.86 Aligned_cols=37 Identities=19% Similarity=0.329 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHhHHHHhhhHHHHHHHH
Q 034185 30 TVFVQNLLQQMQSRFQTMSDSI---VTKIDEMGNRINELEQSI 69 (102)
Q Consensus 30 T~~Vq~LLqQMQ~kFqtMS~~I---~~RiDeMg~RIDdLEksI 69 (102)
.+.+..|+.|++..|+.+|..| ..|+| .||-.|-.-+
T Consensus 13 ~~aL~~L~~qL~~NFgAISSsi~dIy~rLd---GRlaaLnafv 52 (77)
T 1zva_A 13 AQALNTLVKQLSSNFGAISSVLNDISGGRG---GDISGINASV 52 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTSC---CCCTTHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhc---chHHHHHHHH
Confidence 4678899999999999988653 44555 4554444333
No 13
>1pzq_A Erythronolide synthase; four helix bundle, homodimer, transferase; NMR {Saccharopolyspora erythraea} SCOP: a.34.3.1
Probab=84.68 E-value=0.28 Score=31.25 Aligned_cols=23 Identities=39% Similarity=0.797 Sum_probs=18.1
Q ss_pred HHhhhHHHHHHHHHHHHHhhCCC
Q 034185 57 EMGNRINELEQSINDLRAEMGVE 79 (102)
Q Consensus 57 eMg~RIDdLEksI~dLm~qaG~e 79 (102)
|+|.|+|+|||.+..|-.+.|.+
T Consensus 9 digdrldelekalealsaedghd 31 (60)
T 1pzq_A 9 DIGDRLDELEKALEALSAEDGHD 31 (60)
T ss_dssp TTHHHHHHHHHHHHHHTTSSCCH
T ss_pred chhhHHHHHHHHHHHhccccccc
Confidence 56888889998888887777654
No 14
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=84.33 E-value=3.9 Score=26.79 Aligned_cols=53 Identities=23% Similarity=0.355 Sum_probs=36.1
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHhh
Q 034185 16 GHDSEDPKQSTADMTVFVQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDLRAEM 76 (102)
Q Consensus 16 ~~~s~dpkqs~~dLT~~Vq~LLqQMQ~kFqtMS~~I~~RiDeMg~RIDdLEksI~dLm~qa 76 (102)
|++|-..-.+..+|-..++.-.++++.|= .+|++.-.||++.|..|..|-.+.
T Consensus 11 ~~~~~~~mgti~eLq~~L~~K~eELr~kd--------~~I~eLEk~L~ekd~eI~~LqseL 63 (72)
T 3nmd_A 11 GMASIEGRGSLRDLQYALQEKIEELRQRD--------ALIDELELELDQKDELIQMLQNEL 63 (72)
T ss_dssp --------CHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhcccCCcHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445567777777777777776653 568999999999999999998775
No 15
>3p8c_D Wiskott-aldrich syndrome protein family member 1; actin polymerization, protein binding; 2.29A {Homo sapiens}
Probab=83.74 E-value=1.9 Score=34.20 Aligned_cols=40 Identities=8% Similarity=0.402 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHH
Q 034185 28 DMTVFVQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSIND 71 (102)
Q Consensus 28 dLT~~Vq~LLqQMQ~kFqtMS~~I~~RiDeMg~RIDdLEksI~d 71 (102)
+|+.+..++++.|..-+.. |..|+..+..||+.|+..+..
T Consensus 43 dLs~~A~dIF~eL~~e~~~----~~~R~~~L~~RI~~L~~~v~~ 82 (279)
T 3p8c_D 43 SLSKYAEDIFGELFNEAHS----FSFRVNSLQERVDRLSVSVTQ 82 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhccc
Confidence 4444444444444444433 347888888888888887753
No 16
>4gif_A Polycystic kidney disease 2-like 1 protein; coiled-coil, trimer, Trp channel, transient receptor potenti channel, polycystic kidney disease (PKD); 2.80A {Homo sapiens}
Probab=83.59 E-value=5 Score=24.28 Aligned_cols=39 Identities=26% Similarity=0.573 Sum_probs=27.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHH
Q 034185 25 STADMTVFVQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQS 68 (102)
Q Consensus 25 s~~dLT~~Vq~LLqQMQ~kFqtMS~~I~~RiDeMg~RIDdLEks 68 (102)
|.+|+..+...+|| .++.-..|.++||-+++++.-+|++
T Consensus 5 s~eeF~~L~rRVlq-----lE~~l~gI~S~idav~~Kl~~~Er~ 43 (45)
T 4gif_A 5 SGEEFYMLTRRVLQ-----LETVLEGVVSQIDAVGSKLKMLERK 43 (45)
T ss_dssp CHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred CHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45566666655543 4555667889999999999888874
No 17
>3ci9_A Heat shock factor-binding protein 1; triple helix, nucleus, transcription; 1.80A {Homo sapiens}
Probab=83.21 E-value=3.6 Score=24.98 Aligned_cols=39 Identities=33% Similarity=0.499 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHH
Q 034185 34 QNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDL 72 (102)
Q Consensus 34 q~LLqQMQ~kFqtMS~~I~~RiDeMg~RIDdLEksI~dL 72 (102)
+.|-.-+|+=++.|.+..-.-=+.+-+|||+.-..|.+|
T Consensus 5 ~dLt~~vq~LL~qmq~kFq~mS~~I~~riDdM~~RIDdL 43 (48)
T 3ci9_A 5 QDLTSVVQTLLQQMQDKFQTISDQIIGRIDDMSSRIDDL 43 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 445555556666666554444455667899999888876
No 18
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=82.95 E-value=6.8 Score=25.94 Aligned_cols=46 Identities=20% Similarity=0.403 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------------HhHHHHhhhHH----HHHHHHHHHHH
Q 034185 29 MTVFVQNLLQQMQSRFQTMSDSIV-------------TKIDEMGNRIN----ELEQSINDLRA 74 (102)
Q Consensus 29 LT~~Vq~LLqQMQ~kFqtMS~~I~-------------~RiDeMg~RID----dLEksI~dLm~ 74 (102)
|+++=+.|=..|+.+|.....+|- .||++|-+|++ +|++||.-|-.
T Consensus 5 lSAVeDKLRrrl~E~~~q~qaEl~sLrrT~~EL~~G~~KL~~mi~~l~~E~~~l~~ni~~lk~ 67 (78)
T 3iv1_A 5 ISAVSDKLRWRMKEEMDRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIELLKK 67 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556666677777776666654 57888888775 68888876643
No 19
>1f6f_A Placental lactogen; 4-helical bundle, alpha helical bundle, ternary complex, FN III domains, beta sheet domains, cytokine-receptor complex; 2.30A {Ovis aries} SCOP: a.26.1.1
Probab=81.48 E-value=5.2 Score=29.61 Aligned_cols=53 Identities=15% Similarity=0.258 Sum_probs=41.4
Q ss_pred CHHHHHHHHHHH-------HHHHHHHHHH---HHHHHHHhHHHHhhhHHHHHHHHHHHHHhhC
Q 034185 25 STADMTVFVQNL-------LQQMQSRFQT---MSDSIVTKIDEMGNRINELEQSINDLRAEMG 77 (102)
Q Consensus 25 s~~dLT~~Vq~L-------LqQMQ~kFqt---MS~~I~~RiDeMg~RIDdLEksI~dLm~qaG 77 (102)
+..||-.++-.| |+.|..-|.+ +++.|++|-+++..++.+|+.-|.-|+.+.+
T Consensus 78 s~~~LL~~~l~Ll~sW~~PL~~L~~~~~~~~~~p~~ilska~~I~ek~~~L~egi~~i~~~~~ 140 (199)
T 1f6f_A 78 EDKILFKLVISLLHSWDEPLHHAVTELANSKGTSPALLTKAQEIKEKAKVLVDGVEVIQKRIH 140 (199)
T ss_dssp CHHHHHHHHHHHHHTTHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHcccccCcchhcchHHHHHHHHHHHHHHHHHHHHHcc
Confidence 466777777666 4556666665 5588999999999999999999999999864
No 20
>1use_A VAsp, vasodilator-stimulated phosphoprotein; signaling protein, null; 1.3A {Homo sapiens} SCOP: h.1.29.1 PDB: 1usd_A
Probab=72.09 E-value=14 Score=22.40 Aligned_cols=31 Identities=19% Similarity=0.423 Sum_probs=28.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 034185 25 STADMTVFVQNLLQQMQSRFQTMSDSIVTKI 55 (102)
Q Consensus 25 s~~dLT~~Vq~LLqQMQ~kFqtMS~~I~~Ri 55 (102)
+..||-.+=|.+|+.|..-+|.|=++|+.-|
T Consensus 5 ~~~dle~~KqEIL~E~RkElqK~K~EIIeAi 35 (45)
T 1use_A 5 DYSDLQRVKQELLEEVKKELQKVKEEIIEAF 35 (45)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5689999999999999999999999999877
No 21
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=70.41 E-value=3.6 Score=28.44 Aligned_cols=40 Identities=13% Similarity=0.203 Sum_probs=24.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-HHHHhhhHHHHHHHHHH
Q 034185 25 STADMTVFVQNLLQQMQSRFQTMSDSIVTK-IDEMGNRINELEQSIND 71 (102)
Q Consensus 25 s~~dLT~~Vq~LLqQMQ~kFqtMS~~I~~R-iDeMg~RIDdLEksI~d 71 (102)
-..+|..-++.+|+.-.. ....| +||..+||+-|...++.
T Consensus 14 ~i~~l~~~l~~~l~~~~~-------~~~k~~~~D~~KRL~~LfdkLn~ 54 (118)
T 2yru_A 14 LIEDVLRPLEQALEDCHG-------HTKKQVCDDISRRLALLREQWAG 54 (118)
T ss_dssp CHHHHHHHHHHHHHHHHT-------TSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhh-------HHHHHHHHHHHHHHHHHHHHHhc
Confidence 355666666665553222 23344 79999999988876553
No 22
>3hrn_A Transient receptor potential (Trp) channel subfamily P member 2 (TRPP2); coiled coil, helix bundle, trimer, calcium, disease mutation, glycoprotein; 1.90A {Homo sapiens} PDB: 3hro_A
Probab=70.09 E-value=18 Score=23.34 Aligned_cols=39 Identities=26% Similarity=0.386 Sum_probs=28.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHH
Q 034185 25 STADMTVFVQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQS 68 (102)
Q Consensus 25 s~~dLT~~Vq~LLqQMQ~kFqtMS~~I~~RiDeMg~RIDdLEks 68 (102)
|.+|+..+...+|| .++.-..|.++||-+++++.-+|++
T Consensus 4 S~EEF~~L~rRVlq-----LE~sl~gI~SqIDaV~~KL~~~Er~ 42 (64)
T 3hrn_A 4 SYEEFQVLVRRVDR-----MEHSIGSIVSKIDAVIVKLEIMERA 42 (64)
T ss_dssp CHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35566666665553 4555677899999999999999985
No 23
>3p8c_E Probable protein brick1; actin polymerization, protein binding; 2.29A {Homo sapiens}
Probab=69.37 E-value=21 Score=23.43 Aligned_cols=49 Identities=10% Similarity=0.314 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHhh
Q 034185 28 DMTVFVQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDLRAEM 76 (102)
Q Consensus 28 dLT~~Vq~LLqQMQ~kFqtMS~~I~~RiDeMg~RIDdLEksI~dLm~qa 76 (102)
|+..+|...+..+-+-...-+...-.|+-.+..||+.||++|.=|=++.
T Consensus 20 e~ie~in~~I~~~v~FLN~F~~sce~KLa~ln~KL~~LEr~L~iLEAkl 68 (75)
T 3p8c_E 20 EYIEIITSSIKKIADFLNSFDMSCRSRLATLNEKLTALERRIEYIEARV 68 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555666555555443344445556888899999999999998776553
No 24
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=69.06 E-value=2.1 Score=25.62 Aligned_cols=21 Identities=19% Similarity=0.509 Sum_probs=15.5
Q ss_pred HhHHHHhhhHHHHHHHHHHHH
Q 034185 53 TKIDEMGNRINELEQSINDLR 73 (102)
Q Consensus 53 ~RiDeMg~RIDdLEksI~dLm 73 (102)
.+++++-.||++||..|..|-
T Consensus 49 ~~~~~Le~ri~~Le~~l~~l~ 69 (72)
T 2er8_A 49 ARNEAIEKRFKELTRTLTNLT 69 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 567777788888888887653
No 25
>1jek_B ENV polyprotein; envelope glycoprotein, retrovirus, HIV, SIV, GP41, viral Pro; 1.50A {Synthetic} SCOP: h.3.2.1
Probab=68.93 E-value=3.7 Score=23.84 Aligned_cols=18 Identities=22% Similarity=0.257 Sum_probs=15.9
Q ss_pred hhHHHHHHHHHHHHHhhC
Q 034185 60 NRINELEQSINDLRAEMG 77 (102)
Q Consensus 60 ~RIDdLEksI~dLm~qaG 77 (102)
++||.++.+|..|+.++-
T Consensus 7 reI~~~t~nIy~LLeeAq 24 (36)
T 1jek_B 7 EEIEQHEGNLSLLLREAA 24 (36)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 689999999999998863
No 26
>3iyn_Q Protein IX, PIX, hexon-associated protein; cryoem, 3D reconstruction, FULL-ATOM model interaction network, capsid protein, hexon protein; 3.60A {Human adenovirus 5}
Probab=68.65 E-value=6.6 Score=28.68 Aligned_cols=28 Identities=21% Similarity=0.527 Sum_probs=21.8
Q ss_pred HHHHhHHHHhhhHHHHHHHHHHHHHhhC
Q 034185 50 SIVTKIDEMGNRINELEQSINDLRAEMG 77 (102)
Q Consensus 50 ~I~~RiDeMg~RIDdLEksI~dLm~qaG 77 (102)
.++.+++.++.|+++|-+.+.+|-.|.-
T Consensus 102 ~~laqLe~ls~qL~~ls~~v~~L~~q~~ 129 (140)
T 3iyn_Q 102 ALLAQLDSLTRELNVVSQQLLDLRQQVS 129 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567788888888888888888887743
No 27
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=68.39 E-value=5.1 Score=27.42 Aligned_cols=32 Identities=16% Similarity=0.375 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHH
Q 034185 39 QMQSRFQTMSDSIVTKIDEMGNRINELEQSIN 70 (102)
Q Consensus 39 QMQ~kFqtMS~~I~~RiDeMg~RIDdLEksI~ 70 (102)
.|..-|..+..++=.--.||-..|++||+.|+
T Consensus 33 ELs~tfarLc~~Vd~t~~eL~~EI~~L~~eI~ 64 (96)
T 1t3j_A 33 EMATTFARLCQQVDMTQKHLEEEIARLSKEID 64 (96)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444443
No 28
>2yko_A LINE-1 ORF1P; RNA-binding protein, genome evolution, nucleic acid chaperon coiled-coil; HET: MSE; 2.10A {Homo sapiens} PDB: 2ykp_A 2ykq_A 2ldy_A
Probab=67.81 E-value=3.6 Score=32.00 Aligned_cols=24 Identities=21% Similarity=0.180 Sum_probs=16.0
Q ss_pred HhHHHHhhhHHHHHHHHHHHHHhh
Q 034185 53 TKIDEMGNRINELEQSINDLRAEM 76 (102)
Q Consensus 53 ~RiDeMg~RIDdLEksI~dLm~qa 76 (102)
........||..+|.++.||-+-.
T Consensus 27 q~eq~~ekrik~ne~sL~dL~d~i 50 (233)
T 2yko_A 27 REGKFREKRIKRNEQSLQEIWDYV 50 (233)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 444555677777777777776653
No 29
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=66.28 E-value=26 Score=29.32 Aligned_cols=58 Identities=9% Similarity=0.148 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHHH-------------HHhHHHHhhhHHHHHHHHHHHHHh-----hCCCCCCCCCCCCCCC
Q 034185 34 QNLLQQMQSRFQTMSDSI-------------VTKIDEMGNRINELEQSINDLRAE-----MGVEGSPSPLTPSKTN 91 (102)
Q Consensus 34 q~LLqQMQ~kFqtMS~~I-------------~~RiDeMg~RIDdLEksI~dLm~q-----aG~e~~p~~s~~~~~~ 91 (102)
+.-+++++.+-..+|.+| +.++.+++.+|.+||+.+.++-.+ ..+.+.|.+++|.-+.
T Consensus 46 ~~~~~~l~~~rn~~sk~i~~~k~~~~~~~~l~~~~~~l~~~i~~le~~~~~~~~~~~~~l~~iPN~~~~~vP~g~~ 121 (485)
T 3qne_A 46 RFDLDEHNKKLNSVQKEIGKRFKAKEDAKDLIAEKEKLSNEKKEIIEKEAEADKNLRSKINQVGNIVHESVVDSQD 121 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCTTSCCCSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccCCCCCC
Confidence 344677777777788765 345666777777777766655333 2477888888886544
No 30
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=65.98 E-value=22 Score=24.18 Aligned_cols=24 Identities=29% Similarity=0.471 Sum_probs=18.1
Q ss_pred HHhHHHHhhhHHHHHHHHHHHHHh
Q 034185 52 VTKIDEMGNRINELEQSINDLRAE 75 (102)
Q Consensus 52 ~~RiDeMg~RIDdLEksI~dLm~q 75 (102)
=.+|.++..|+++.|...++|...
T Consensus 82 e~~l~el~~rleeeee~~~~L~~~ 105 (129)
T 2fxo_A 82 EAKVKEMNKRLEDEEEMNAELTAK 105 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367788888888877777777653
No 31
>1lwu_B Fibrinogen beta chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_B*
Probab=65.86 E-value=7.3 Score=30.96 Aligned_cols=48 Identities=13% Similarity=0.317 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHH---HHhHHHHhhhHHHHHHHHHHHHHhh
Q 034185 29 MTVFVQNLLQQMQSRFQ-TMSDSI---VTKIDEMGNRINELEQSINDLRAEM 76 (102)
Q Consensus 29 LT~~Vq~LLqQMQ~kFq-tMS~~I---~~RiDeMg~RIDdLEksI~dLm~qa 76 (102)
++.-|+....+|+..++ +++.+| -++++.+..+|..||..|..++...
T Consensus 7 ~~~~le~~~~~ik~~~~~~~~~~I~~Lq~~le~L~~KI~~LE~~v~~q~~~~ 58 (323)
T 1lwu_B 7 AQKEIENRYKEVKIRIESTVAGSLRSMKSVLEHLRAKMQRMEEAIKTQKELC 58 (323)
T ss_dssp CHHHHHHHTHHHHHHHHTTTHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34556666666666664 333333 3578999999999999999888764
No 32
>3te3_A Polycystic kidney disease 2-like 1 protein; trimeric coiled-coil, oligomerization domain, C-terminal CYT regulatory domain, metal transport; 2.69A {Homo sapiens}
Probab=65.77 E-value=5.2 Score=23.53 Aligned_cols=19 Identities=16% Similarity=0.422 Sum_probs=15.8
Q ss_pred HhhhHHHHHHHHHHHHHhh
Q 034185 58 MGNRINELEQSINDLRAEM 76 (102)
Q Consensus 58 Mg~RIDdLEksI~dLm~qa 76 (102)
..+|++.||.+|..+|.+.
T Consensus 12 L~rRVlqlE~~l~gI~S~i 30 (39)
T 3te3_A 12 LTRRVLQLETVLEGVVSQI 30 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3578999999999998874
No 33
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=65.26 E-value=6.3 Score=26.97 Aligned_cols=43 Identities=12% Similarity=0.262 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHh
Q 034185 33 VQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDLRAE 75 (102)
Q Consensus 33 Vq~LLqQMQ~kFqtMS~~I~~RiDeMg~RIDdLEksI~dLm~q 75 (102)
.+.+|.++...|..=.++|..|++.+-.++.+||+.|..|..+
T Consensus 12 ~~~~l~~~a~~Lk~~~~~l~~~v~~l~~e~k~l~ke~~~l~~~ 54 (171)
T 2zvf_A 12 MERLLREASSILRVEPAKLPKTVERFFEEWKDQRKEIERLKSV 54 (171)
T ss_dssp HHHHHHHHHHTTTCCTTSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666766665433688889999999999999988887755
No 34
>2yo3_A General control protein GCN4, putative inner MEMB protein, general control protein...; HANS motif, YADA-like head, ylhead; 2.00A {Saccharomyces cerevisiae}
Probab=65.18 E-value=37 Score=26.90 Aligned_cols=55 Identities=20% Similarity=0.277 Sum_probs=26.7
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHhHHHHhhhHHHHHHHHHH
Q 034185 16 GHDSEDPKQSTADMTVFVQNLLQQMQSRFQTMS----------DSIVTKIDEMGNRINELEQSIND 71 (102)
Q Consensus 16 ~~~s~dpkqs~~dLT~~Vq~LLqQMQ~kFqtMS----------~~I~~RiDeMg~RIDdLEksI~d 71 (102)
|..++|.- +...|.+.++..-+--..||..|. .+|-.|+.+.-++|-.||.+|+.
T Consensus 191 G~~stDAV-Nv~QL~~s~~~an~yTd~k~~~l~n~I~~V~n~~~q~~~~~~~~~~~~~~~~~~~~~ 255 (268)
T 2yo3_A 191 AVNDTDAV-NYAQLKRSVEEANTYTDQKMGEMNSKIKGVENKMKQIEDKIEEILSKIYHIENEIAR 255 (268)
T ss_dssp CCSTTSBC-BHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCccccc-hHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666 667776655544333333443333 23334444444444444444443
No 35
>1sfc_A VAMP 2, protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1
Probab=63.28 E-value=26 Score=23.04 Aligned_cols=20 Identities=25% Similarity=0.461 Sum_probs=14.0
Q ss_pred HHhhhHHHHHHHHHHHHHhh
Q 034185 57 EMGNRINELEQSINDLRAEM 76 (102)
Q Consensus 57 eMg~RIDdLEksI~dLm~qa 76 (102)
+=|.|||+|+..-.+|..++
T Consensus 55 eRGEkLd~L~dkse~L~~~S 74 (96)
T 1sfc_A 55 ERDQKLSELDDRADALQAGA 74 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHHHHH
Confidence 33777888877777776654
No 36
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=62.35 E-value=42 Score=27.34 Aligned_cols=59 Identities=19% Similarity=0.344 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHHHH-------------HhHHHHhhhHHHHHHHHHHHHHhh-----CCCCCCCCCCCCCCCC
Q 034185 34 QNLLQQMQSRFQTMSDSIV-------------TKIDEMGNRINELEQSINDLRAEM-----GVEGSPSPLTPSKTNS 92 (102)
Q Consensus 34 q~LLqQMQ~kFqtMS~~I~-------------~RiDeMg~RIDdLEksI~dLm~qa-----G~e~~p~~s~~~~~~~ 92 (102)
+.-+++++.+-..+|.+|- .++.+++.+|.+||+.+.++-.+. .+.+.|.+++|.-+.+
T Consensus 44 ~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipN~~~~~vP~g~~e 120 (455)
T 2dq0_A 44 LKEINRLRHERNKIAVEIGKRRKKGEPVDELLAKSREIVKRIGELENEVEELKKKIDYYLWRLPNITHPSVPVGKDE 120 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCTTSCCCSSG
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccCCCCCCC
Confidence 3446667777777776663 445666777777777766655443 5888888888876543
No 37
>4gif_A Polycystic kidney disease 2-like 1 protein; coiled-coil, trimer, Trp channel, transient receptor potenti channel, polycystic kidney disease (PKD); 2.80A {Homo sapiens}
Probab=62.09 E-value=6.4 Score=23.79 Aligned_cols=18 Identities=17% Similarity=0.394 Sum_probs=14.3
Q ss_pred hhhHHHHHHHHHHHHHhh
Q 034185 59 GNRINELEQSINDLRAEM 76 (102)
Q Consensus 59 g~RIDdLEksI~dLm~qa 76 (102)
.+|++.||.+|..+|.+.
T Consensus 13 ~rRVlqlE~~l~gI~S~i 30 (45)
T 4gif_A 13 TRRVLQLETVLEGVVSQI 30 (45)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 578888888888888764
No 38
>2ba2_A D12_ORF131, hypothetical UPF0134 protein MPN010; DUF16, hypothetical protein, coiled-coil, stutter, structural genomics, PSI; 1.80A {Mycoplasma pneumoniae} SCOP: h.1.30.1
Probab=61.87 E-value=3.9 Score=27.80 Aligned_cols=18 Identities=22% Similarity=0.536 Sum_probs=15.8
Q ss_pred HHHHHhHHHHhhhHHHHH
Q 034185 49 DSIVTKIDEMGNRINELE 66 (102)
Q Consensus 49 ~~I~~RiDeMg~RIDdLE 66 (102)
.-|+..|..|+.|+|.||
T Consensus 67 ~lil~tL~~~nkRLDkle 84 (85)
T 2ba2_A 67 QLILEALQGINKRLDNLE 84 (85)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhhccC
Confidence 356899999999999997
No 39
>3pp5_A BRK1, protein brick1; triple coiled-coil, precursor of the SCAR-WAVE complex, ABI, structural protein; 1.50A {Dictyostelium discoideum}
Probab=60.28 E-value=33 Score=22.40 Aligned_cols=48 Identities=13% Similarity=0.232 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHh
Q 034185 28 DMTVFVQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDLRAE 75 (102)
Q Consensus 28 dLT~~Vq~LLqQMQ~kFqtMS~~I~~RiDeMg~RIDdLEksI~dLm~q 75 (102)
|+.++|..-+..+-+-...-+...-.|+-++..||+.||+.|.=|=++
T Consensus 20 e~ie~is~~I~~~v~FLN~F~~sce~KLa~ln~kL~~lE~~L~iLEAk 67 (73)
T 3pp5_A 20 EFIEDMSINIQKIVEFLNKFELSTRNKLSDLNEKLTILDRQVDYLEAT 67 (73)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444433333332222333445578888889999999988766444
No 40
>2lme_A Adhesin YADA; trimeric autotransporter, membrane protein, cell adhesion; NMR {Yersinia enterocolitica subsp}
Probab=59.85 E-value=9.3 Score=25.45 Aligned_cols=22 Identities=23% Similarity=0.471 Sum_probs=15.6
Q ss_pred HhHHHHhhhHHHHHHHHHHHHH
Q 034185 53 TKIDEMGNRINELEQSINDLRA 74 (102)
Q Consensus 53 ~RiDeMg~RIDdLEksI~dLm~ 74 (102)
.||+++..|||+|++.+..-..
T Consensus 16 ~~~~~l~~~i~~~~~~~~~g~A 37 (105)
T 2lme_A 16 HKFRQLDNRLDKLDTRVDKGLA 37 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5677788888888887665443
No 41
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=59.24 E-value=12 Score=21.94 Aligned_cols=21 Identities=19% Similarity=0.378 Sum_probs=14.6
Q ss_pred HHHHhhhHHHHHHHHHHHHHh
Q 034185 55 IDEMGNRINELEQSINDLRAE 75 (102)
Q Consensus 55 iDeMg~RIDdLEksI~dLm~q 75 (102)
++++-.||+.||+.|..|-..
T Consensus 46 ~~~L~~ri~~Le~~l~~l~~~ 66 (70)
T 1zme_C 46 LQQLQKDLNDKTEENNRLKAL 66 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 566667777777777777553
No 42
>1n7s_A Vesicle-associated membrane protein 2; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1kil_A 3rk2_A 3rk3_A 3rl0_A 3fii_B 3g94_B
Probab=58.15 E-value=28 Score=20.89 Aligned_cols=22 Identities=23% Similarity=0.406 Sum_probs=14.5
Q ss_pred HHHHhhhHHHHHHHHHHHHHhh
Q 034185 55 IDEMGNRINELEQSINDLRAEM 76 (102)
Q Consensus 55 iDeMg~RIDdLEksI~dLm~qa 76 (102)
+-+=|.|||+|+..=.+|..++
T Consensus 27 vl~RGekLd~L~~ks~~L~~~s 48 (63)
T 1n7s_A 27 VLERDQKLSELDDRADALQAGA 48 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhHHHHHHHHHHHHHHH
Confidence 3344777777777777776654
No 43
>2l3l_A Tubulin-specific chaperone C; tubulin binding cofactor; NMR {Homo sapiens}
Probab=56.65 E-value=12 Score=25.47 Aligned_cols=21 Identities=33% Similarity=0.615 Sum_probs=17.7
Q ss_pred HHhHHHHhhhHHHHHHHHHHH
Q 034185 52 VTKIDEMGNRINELEQSINDL 72 (102)
Q Consensus 52 ~~RiDeMg~RIDdLEksI~dL 72 (102)
...+|++..+|..|++-++|-
T Consensus 57 ~~~ld~i~~~I~~Lqk~v~da 77 (111)
T 2l3l_A 57 VERLEEAASRLQGLQKLINDS 77 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHS
T ss_pred hhHHHHHHHHHHHHHHHHHHH
Confidence 456899999999999988873
No 44
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=56.28 E-value=38 Score=26.28 Aligned_cols=24 Identities=13% Similarity=0.279 Sum_probs=18.6
Q ss_pred hHHHHhhhHHHHHHHHHHHHHhhC
Q 034185 54 KIDEMGNRINELEQSINDLRAEMG 77 (102)
Q Consensus 54 RiDeMg~RIDdLEksI~dLm~qaG 77 (102)
.-..|-+.||++++++.++-.||.
T Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~ 421 (471)
T 3mq9_A 398 VTHLLQQELTEAQKGFQDVEAQAA 421 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHhh
Confidence 335678888889998888888764
No 45
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=55.89 E-value=4.5 Score=26.20 Aligned_cols=19 Identities=16% Similarity=0.118 Sum_probs=14.2
Q ss_pred hhhHHHHHHHHHHHHHhhC
Q 034185 59 GNRINELEQSINDLRAEMG 77 (102)
Q Consensus 59 g~RIDdLEksI~dLm~qaG 77 (102)
...||.|++.+.-|..+..
T Consensus 41 q~~Id~L~~ql~~L~~rl~ 59 (78)
T 3efg_A 41 RLTGARNAELIRHLLEDLG 59 (78)
T ss_dssp HHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4568888888888888754
No 46
>2cf7_A DPR; peroxide resistance, DPS-family, ferritin-like, ferroxidase, iron-binding; HET: EPE; 1.50A {Streptococcus suis} PDB: 2ux1_A* 2bw1_A* 1umn_A* 2v15_A* 2xjm_A* 2xjn_A* 2xjo_A* 2xkq_A*
Probab=55.87 E-value=28 Score=24.14 Aligned_cols=30 Identities=17% Similarity=0.263 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHhhhHHHHH
Q 034185 37 LQQMQSRFQTMSDSIVTKIDEMGNRINELE 66 (102)
Q Consensus 37 LqQMQ~kFqtMS~~I~~RiDeMg~RIDdLE 66 (102)
+..+..+|+.++.+...-+|++..||-.|+
T Consensus 48 f~~lh~~~ee~~~e~~~haD~lAERIl~LG 77 (165)
T 2cf7_A 48 FMIWHPKMDEYMEEIDGYLAEMSERLITLG 77 (165)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 455678889999999999999999998775
No 47
>2z9e_A Cellulose synthase operon protein D; alpha and beta fold, octamer, tetramer of dimers, molecule ring, cellulose biosynthesis; 2.50A {Acetobacter xylinus} PDB: 3aj1_A 3aj2_A 3a8e_A 2z9f_A
Probab=55.61 E-value=51 Score=24.47 Aligned_cols=47 Identities=23% Similarity=0.416 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhh------------HHHHHHHHHHHHHhhC
Q 034185 29 MTVFVQNLLQQMQSRFQTMSDSIVTKIDEMGNR------------INELEQSINDLRAEMG 77 (102)
Q Consensus 29 LT~~Vq~LLqQMQ~kFqtMS~~I~~RiDeMg~R------------IDdLEksI~dLm~qaG 77 (102)
-+.|+..|.+.|.+.... ++.-.-|-.||.| +++||++||.+....+
T Consensus 21 W~~FL~aLa~E~~~~ag~--~e~~~fLrrvG~rlA~r~PLp~~~TlaeLE~~iNavla~~~ 79 (167)
T 2z9e_A 21 FTLFLQTLSWEIDDQVGI--EVRNELLREVGRGMGTRIMPPPCQTVDKLQIELNALLALIG 79 (167)
T ss_dssp CHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHTTTBCCCCCSSHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHhCCH--HHHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHhCC
Confidence 456777777777666543 2333335556665 6999999999988765
No 48
>3aj1_A Cellulose synthase operon protein D; alpha and beta fold, octamer, tetramer of dimers, molecule R cellulose biosynthesis; 2.50A {Acetobacter xylinus} PDB: 3aj2_A 3a8e_A
Probab=55.02 E-value=35 Score=25.38 Aligned_cols=48 Identities=25% Similarity=0.440 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhh------------HHHHHHHHHHHHHhhC
Q 034185 28 DMTVFVQNLLQQMQSRFQTMSDSIVTKIDEMGNR------------INELEQSINDLRAEMG 77 (102)
Q Consensus 28 dLT~~Vq~LLqQMQ~kFqtMS~~I~~RiDeMg~R------------IDdLEksI~dLm~qaG 77 (102)
+...||+.|..++.+.... ++.-.-|-.||.| +++||++||.+....+
T Consensus 20 ~~~~Fl~aLa~Ei~~~ag~--ee~~~fL~r~G~rlA~r~PLp~~~Tl~dLE~~iN~vla~~~ 79 (167)
T 3aj1_A 20 DFTLFLQTLSWEIDDQVGI--EVRNELLREVGRGMGTRIMPPPCQTVDKLQIELNALLALIG 79 (167)
T ss_dssp CCHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHTTTBCCCCCSSHHHHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHhcCCH--HHHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHhhCC
Confidence 5778898888888776643 2333445666666 6999999999998765
No 49
>4a25_A DPS, ferritin DPS family protein; metal binding protein, detoxification process; 2.00A {Kineococcus radiotolerans}
Probab=54.76 E-value=15 Score=25.82 Aligned_cols=29 Identities=10% Similarity=0.308 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHhHHHHhhhHHHHH
Q 034185 38 QQMQSRFQTMSDSIVTKIDEMGNRINELE 66 (102)
Q Consensus 38 qQMQ~kFqtMS~~I~~RiDeMg~RIDdLE 66 (102)
-++...|+.+-+++...+|+++.||-.|-
T Consensus 56 ~~lH~~fee~y~e~~~~~D~iAERI~~LG 84 (169)
T 4a25_A 56 RDLHLQLDTLVEAARGFSDDVAERMRAVG 84 (169)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 45577899999999999999999987763
No 50
>1hwt_C Protein (heme activator protein); transcription factor, asymmetry, GAL4, complex activator/DNA, gene regulation/DNA complex; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 2hap_C* 1qp9_A* 1pyc_A
Probab=54.08 E-value=4.4 Score=24.52 Aligned_cols=21 Identities=14% Similarity=0.555 Sum_probs=14.5
Q ss_pred HhHHHHhhhHHHHHHHHHHHH
Q 034185 53 TKIDEMGNRINELEQSINDLR 73 (102)
Q Consensus 53 ~RiDeMg~RIDdLEksI~dLm 73 (102)
..++.+-.||+.||..|..|-
T Consensus 58 ~~~~~L~~ri~~LE~~l~~l~ 78 (81)
T 1hwt_C 58 NELKKLRERVKSLEKTLSKVH 78 (81)
T ss_dssp HHHHHHHHHHHHHHTTC----
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 467888899999999888764
No 51
>1t72_A Phosphate transport system protein PHOU homolog; helix bundle, structural genomics, BSGC structure funded by NIH, protein structure initiative; 2.90A {Aquifex aeolicus} SCOP: a.7.12.1 PDB: 1t8b_A
Probab=53.52 E-value=52 Score=22.67 Aligned_cols=64 Identities=13% Similarity=0.176 Sum_probs=43.2
Q ss_pred hhHHhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHH
Q 034185 9 WLLFWQDGHDSEDPKQSTADMTVFVQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDLR 73 (102)
Q Consensus 9 ~~~~~~~~~~s~dpkqs~~dLT~~Vq~LLqQMQ~kFqtMS~~I~~RiDeMg~RIDdLEksI~dLm 73 (102)
|..|-.....+ .+.....+|...|...|....+-|.+.......++-++-.+||+|+..|..-.
T Consensus 107 ~~~~~~~~~~~-~~~~el~~m~~~v~~ml~~a~~a~~~~d~~~a~~v~~~d~~iD~l~~~i~~~~ 170 (227)
T 1t72_A 107 RAILLAEEPPL-KPYVNINFMSEIVKEMVNDSVISFIQQDTLLAKKVIEKDDTVDELYHQLEREL 170 (227)
T ss_dssp HHHHHHTSCCS-SCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcccCCC-chHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444443222 33324567788888888888888877666777777777788888887776543
No 52
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=53.35 E-value=58 Score=26.15 Aligned_cols=56 Identities=20% Similarity=0.379 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHH-----------HHhHHHHhhhHHHHHHHHHHHHHhh-----CCCCCCCCCCCCC
Q 034185 34 QNLLQQMQSRFQTMSDSI-----------VTKIDEMGNRINELEQSINDLRAEM-----GVEGSPSPLTPSK 89 (102)
Q Consensus 34 q~LLqQMQ~kFqtMS~~I-----------~~RiDeMg~RIDdLEksI~dLm~qa-----G~e~~p~~s~~~~ 89 (102)
+.-+++++.+-..+|.+| +.++.+++.+|.+||+.+.++-.+. .+.+.|.+++|.-
T Consensus 41 ~~~~~~l~~~~n~~sk~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipN~~~~~vp~g 112 (421)
T 1ses_A 41 KKRLQEVQTERNQVAKRVPKAPPEEKEALIARGKALGEEAKRLEEALREKEARLEALLLQVPLPPWPGAPVG 112 (421)
T ss_dssp HHHHHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCTTSCSS
T ss_pred HHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCC
Confidence 334566666666666544 5666677777777777766655443 4788888888765
No 53
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=53.31 E-value=42 Score=26.96 Aligned_cols=59 Identities=20% Similarity=0.410 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHHH-------------HhHHHHhhhHHHHHHHHHHHHHhh-----CCCCCCCCCCCCCCCC
Q 034185 34 QNLLQQMQSRFQTMSDSIV-------------TKIDEMGNRINELEQSINDLRAEM-----GVEGSPSPLTPSKTNS 92 (102)
Q Consensus 34 q~LLqQMQ~kFqtMS~~I~-------------~RiDeMg~RIDdLEksI~dLm~qa-----G~e~~p~~s~~~~~~~ 92 (102)
+.-+++++.+-..+|.+|- .++.+++.+|.+||+.+.++-.+. .+.+.|.+++|.-+.+
T Consensus 43 ~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipN~~~~~vp~g~~e 119 (425)
T 2dq3_A 43 IKRLEALRSERNKLSKEIGKLKREGKDTTEIQNRVKELKEEIDRLEEELRKVEEELKNTLLWIPNLPHPSVPVGEDE 119 (425)
T ss_dssp HHHHHHHHHHHHHHHHHTTGGGSSCSCTTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCCCTTSCCCSSG
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCc
Confidence 3446777888888887764 344556666666666655554432 4888888888775543
No 54
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=52.79 E-value=76 Score=26.41 Aligned_cols=38 Identities=13% Similarity=0.187 Sum_probs=25.1
Q ss_pred HHhHHHHhhhHHHHHHHHHHHHHhh-----CCCCCCCCCCCCC
Q 034185 52 VTKIDEMGNRINELEQSINDLRAEM-----GVEGSPSPLTPSK 89 (102)
Q Consensus 52 ~~RiDeMg~RIDdLEksI~dLm~qa-----G~e~~p~~s~~~~ 89 (102)
+.++.+++.+|.+||+.+.++-.+. .+.+.|.+++|.-
T Consensus 122 ~~~~~~l~~~i~~l~~~~~~~~~~l~~~l~~iPN~~~~~vP~g 164 (501)
T 1wle_A 122 RARGREIRKQLTLLYPKEAQLEEQFYLRALRLPNQTHPDVPVG 164 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCTTCCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCC
Confidence 3444556677777766666554443 5888898888765
No 55
>1t72_A Phosphate transport system protein PHOU homolog; helix bundle, structural genomics, BSGC structure funded by NIH, protein structure initiative; 2.90A {Aquifex aeolicus} SCOP: a.7.12.1 PDB: 1t8b_A
Probab=52.75 E-value=48 Score=22.84 Aligned_cols=48 Identities=15% Similarity=0.200 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHh
Q 034185 28 DMTVFVQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDLRAE 75 (102)
Q Consensus 28 dLT~~Vq~LLqQMQ~kFqtMS~~I~~RiDeMg~RIDdLEksI~dLm~q 75 (102)
.|...|...|...-.-|.+-......++-++-.+||.|++.|.....+
T Consensus 22 ~M~~~v~~~l~~a~~al~~~d~~~a~~v~~~d~~iD~l~~~i~~~~~~ 69 (227)
T 1t72_A 22 KMAKLVQEAIDKATEALNKQNVELAEEVIKGDDTIDLLEVDIERRCIR 69 (227)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 445555555555555565545566677777888899999888776544
No 56
>3gwk_C SAG1039, putative uncharacterized protein SAG1039; WXG motif, four-helical bundle, viral protein; 1.30A {Streptococcus agalactiae serogroup V} PDB: 3gvm_A 3o9o_A
Probab=52.50 E-value=34 Score=20.84 Aligned_cols=15 Identities=27% Similarity=0.541 Sum_probs=5.7
Q ss_pred HhHHHHhhhHHHHHH
Q 034185 53 TKIDEMGNRINELEQ 67 (102)
Q Consensus 53 ~RiDeMg~RIDdLEk 67 (102)
..++.|..-|+++.+
T Consensus 62 ~~~~~~~~~L~~i~~ 76 (98)
T 3gwk_C 62 PKITEFAQLLEDINQ 76 (98)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 57
>2gr7_A Adhesin; trimeric autotransporter, adhesion, membrane protein, protei secretion, microbial pathogenesis; HET: C8E; 2.30A {Haemophilus influenzae} SCOP: d.24.1.4
Probab=52.31 E-value=33 Score=23.91 Aligned_cols=42 Identities=5% Similarity=0.233 Sum_probs=22.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHH----HHHHHHhhCC
Q 034185 25 STADMTVFVQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQS----INDLRAEMGV 78 (102)
Q Consensus 25 s~~dLT~~Vq~LLqQMQ~kFqtMS~~I~~RiDeMg~RIDdLEks----I~dLm~qaG~ 78 (102)
+...|+++.+.+.+ +-.||+.+..|||+++|. |+--|.-+++
T Consensus 23 Ng~QL~~v~~~v~~------------~~~~in~L~~~I~~~~k~a~aGiA~A~A~A~L 68 (129)
T 2gr7_A 23 NGSQLYAVAKGVTN------------LAGQVNNLEGKVNKVGKRADAGTASALAASQL 68 (129)
T ss_dssp ------CHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred cHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 45677777666532 235677778888888877 4555555554
No 58
>3emo_C HIA (adhesin); transmembrane, outer membrane, trimeric autotransporter, membrane protein/cell adhesion complex; 3.00A {Haemophilus influenzae}
Probab=52.19 E-value=64 Score=23.29 Aligned_cols=48 Identities=8% Similarity=0.239 Sum_probs=31.0
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHH----HHHHHhhCC
Q 034185 18 DSEDPKQSTADMTVFVQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSI----NDLRAEMGV 78 (102)
Q Consensus 18 ~s~dpkqs~~dLT~~Vq~LLqQMQ~kFqtMS~~I~~RiDeMg~RIDdLEksI----~dLm~qaG~ 78 (102)
.++|.- +..+|-+..+.+- .+-.||+.+..||+++++.. +--+.-+++
T Consensus 50 ~~tDAv-N~~Ql~~~~~~v~------------n~~~~in~L~~~I~~~~k~a~aGiA~A~A~A~L 101 (162)
T 3emo_C 50 TSTDAI-NGSQLYAVAKGVT------------NLAGQVNNLEGKVNKVGKRADAGTASALAASQL 101 (162)
T ss_dssp TCCCBC-BHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCccc-cHHHHhhhhhhhh------------hhHHHHHHHHhhhhhhHHhHHHHHHHHHHhccC
Confidence 566666 6777777665531 23467778888888888775 444554554
No 59
>1pyi_A Protein (pyrimidine pathway regulator 1); protein-DNA complex, transcription/DNA complex, GAL4, zinc finger, Zn2Cys6, binuclear cluster; HET: DNA; 3.20A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1
Probab=51.98 E-value=17 Score=22.42 Aligned_cols=19 Identities=5% Similarity=0.172 Sum_probs=13.8
Q ss_pred hHHHHhhhHHHHHHHHHHH
Q 034185 54 KIDEMGNRINELEQSINDL 72 (102)
Q Consensus 54 RiDeMg~RIDdLEksI~dL 72 (102)
.+..+-.||..||+.|..+
T Consensus 49 ~~~~Le~rl~~le~~l~~~ 67 (96)
T 1pyi_A 49 YVFFLEDRLAVMMRVLKEY 67 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3456678888999877765
No 60
>1l4a_A Synaptobrevin; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=51.90 E-value=22 Score=22.47 Aligned_cols=22 Identities=27% Similarity=0.427 Sum_probs=15.4
Q ss_pred HHHHhhhHHHHHHHHHHHHHhh
Q 034185 55 IDEMGNRINELEQSINDLRAEM 76 (102)
Q Consensus 55 iDeMg~RIDdLEksI~dLm~qa 76 (102)
+-+=|.|||+|+..-.+|..++
T Consensus 38 vLeRGekLd~L~~kt~~L~~~s 59 (80)
T 1l4a_A 38 VLERDSKISELDDRADALQAGA 59 (80)
T ss_dssp HHHHHHHHHHHHHHHHTTTTTS
T ss_pred HHHhhhHHHHHHHHHHHHHHHH
Confidence 3344888898888777776654
No 61
>2gtl_O Extracellular hemoglobin linker L3 subunit; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1
Probab=51.53 E-value=4.9 Score=30.59 Aligned_cols=21 Identities=14% Similarity=0.501 Sum_probs=12.7
Q ss_pred HHHhHHHHhhhHHHHHHHHHH
Q 034185 51 IVTKIDEMGNRINELEQSIND 71 (102)
Q Consensus 51 I~~RiDeMg~RIDdLEksI~d 71 (102)
|..||+++-.+|+.||.++.+
T Consensus 10 ~~~~~~~l~~~~~~l~~~~~~ 30 (215)
T 2gtl_O 10 LIERTNKITTSISHVESLLDD 30 (215)
T ss_dssp TTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHhhhhhc
Confidence 445666666666666666554
No 62
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=51.41 E-value=19 Score=21.66 Aligned_cols=32 Identities=25% Similarity=0.559 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHH
Q 034185 33 VQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQS 68 (102)
Q Consensus 33 Vq~LLqQMQ~kFqtMS~~I~~RiDeMg~RIDdLEks 68 (102)
|+..|.++..-++.+ ...+.++-.+|..|+..
T Consensus 25 VD~FLd~v~~~~~~l----~~e~~~L~~~~~~l~~~ 56 (57)
T 2wuj_A 25 VNEFLAQVRKDYEIV----LRKKTELEAKVNELDER 56 (57)
T ss_dssp HHHHHHHHHHHHHHH----HHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhc
Confidence 444555555555443 34455566666666554
No 63
>3uno_A Probable bacterioferritin BFRB; ferroxidase activity, iron storage, oxidoreductase; 2.50A {Mycobacterium tuberculosis} PDB: 3oj5_A 3qd8_A
Probab=50.93 E-value=65 Score=23.00 Aligned_cols=36 Identities=19% Similarity=0.240 Sum_probs=16.1
Q ss_pred HHHhHHHHhhhHHHHHHHHHHHHHhhCCCCCCCCCCCCCC
Q 034185 51 IVTKIDEMGNRINELEQSINDLRAEMGVEGSPSPLTPSKT 90 (102)
Q Consensus 51 I~~RiDeMg~RIDdLEksI~dLm~qaG~e~~p~~s~~~~~ 90 (102)
++++|+-||.-.-.|+.-+.+-+ . +....+.+|+..
T Consensus 142 ~l~~l~~~g~~~~~l~~yL~~~~---~-~~~~~~~~~~~~ 177 (189)
T 3uno_A 142 LVRVADRAGANLFELENFVAREV---D-VAPAASGAPHAA 177 (189)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHS---C-CCCCCCCCCCCT
T ss_pred HHHHHHHhCCCHHHHHHHHHHHh---c-CCCCCCCCCccc
Confidence 34444445444444444444433 3 334444455443
No 64
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=50.93 E-value=51 Score=22.83 Aligned_cols=51 Identities=18% Similarity=0.257 Sum_probs=25.6
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHhHHHHhhhHHHHHHHHH
Q 034185 17 HDSEDPKQSTADMTVFVQNLLQQMQSRFQT------------------MSDSIVTKIDEMGNRINELEQSIN 70 (102)
Q Consensus 17 ~~s~dpkqs~~dLT~~Vq~LLqQMQ~kFqt------------------MS~~I~~RiDeMg~RIDdLEksI~ 70 (102)
+...||= -.+-.=|+.-|+.|+..|+. ...++..-|.+.-.-|+|||++|.
T Consensus 23 ms~~DPF---~~Vk~EVq~sl~~l~~l~~~w~~l~~~~~~~s~~E~~~~~~EL~~~l~sie~dLeDLe~sI~ 91 (130)
T 4dnd_A 23 MSLEDPF---FVVRGEVQKAVNTARGLYQRWCELLQESAAVGREELDWTTNELRNGLRSIEWDLEDLEETIG 91 (130)
T ss_dssp ----CCH---HHHHHHHHHHHHHHHHHHHHHHHC---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCc---HHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456663 34444555555555555553 333445555555566666666665
No 65
>2xz3_A Maltose ABC transporter periplasmic protein, ENVE glycoprotein; viral protein, viral membrane fusion, hairpin, chimera; HET: MAL; 1.95A {Escherichia coli} PDB: 1mg1_A*
Probab=50.90 E-value=36 Score=26.33 Aligned_cols=32 Identities=9% Similarity=0.216 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHH
Q 034185 41 QSRFQTMSDSIVTKIDEMGNRINELEQSINDL 72 (102)
Q Consensus 41 Q~kFqtMS~~I~~RiDeMg~RIDdLEksI~dL 72 (102)
..+++.+-.++-.-|+++..-|..|+++|..|
T Consensus 374 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 405 (463)
T 2xz3_A 374 HQRLTSLIHVLEQDQQRLITAINQTHYNLLNV 405 (463)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666777777777777777654
No 66
>3uul_A Utrophin; spectrin repeat, structural protein, cytoskeletal, helical bundle; 1.95A {Rattus norvegicus} PDB: 3uum_A
Probab=50.74 E-value=41 Score=20.61 Aligned_cols=19 Identities=16% Similarity=0.205 Sum_probs=9.5
Q ss_pred HHHhHHHHhhhHHHHHHHH
Q 034185 51 IVTKIDEMGNRINELEQSI 69 (102)
Q Consensus 51 I~~RiDeMg~RIDdLEksI 69 (102)
|-.|++++..|-+.|-...
T Consensus 83 i~~~l~~l~~rw~~L~~~~ 101 (118)
T 3uul_A 83 IQEQMTLLNARWEALRVES 101 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4445555555555554433
No 67
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=50.72 E-value=27 Score=21.32 Aligned_cols=24 Identities=8% Similarity=0.181 Sum_probs=14.6
Q ss_pred HHHhHHHHhhhHHHHHHHHHHHHH
Q 034185 51 IVTKIDEMGNRINELEQSINDLRA 74 (102)
Q Consensus 51 I~~RiDeMg~RIDdLEksI~dLm~ 74 (102)
+-..++.++.+||.|...|..|-.
T Consensus 9 Lss~V~~L~~kVdqLssdV~al~~ 32 (52)
T 1jcd_A 9 ASSDAQTANAKADQASNDANAARS 32 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 335566666666666666666544
No 68
>3opc_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, chaperone; HET: MSE; 2.09A {Bordetella pertussis}
Probab=50.61 E-value=54 Score=22.03 Aligned_cols=50 Identities=14% Similarity=0.357 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH--------HHHHhHHHHhhhHHHHHHHHHHHHHhhCCC
Q 034185 30 TVFVQNLLQQMQSRFQTMSD--------SIVTKIDEMGNRINELEQSINDLRAEMGVE 79 (102)
Q Consensus 30 T~~Vq~LLqQMQ~kFqtMS~--------~I~~RiDeMg~RIDdLEksI~dLm~qaG~e 79 (102)
...++.|+.-|+..++-+.. .|..+....-.+|..+|+....++...|..
T Consensus 17 ~~~l~~L~~lL~~E~~~L~~~~d~~~L~~i~~~K~~ll~~L~~~~~~R~~~l~~lgl~ 74 (154)
T 3opc_A 17 NALVVEFLHALEAETEALMDRRAHESLQAAVQRKETLADDLAQLGAERDALLSGAGLA 74 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 44556667777777776655 566666777888999999999999999875
No 69
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=50.36 E-value=48 Score=21.38 Aligned_cols=17 Identities=24% Similarity=0.519 Sum_probs=8.5
Q ss_pred hhhHHHHHHHHHHHHHh
Q 034185 59 GNRINELEQSINDLRAE 75 (102)
Q Consensus 59 g~RIDdLEksI~dLm~q 75 (102)
|.|||+|+..=.+|-.+
T Consensus 32 gekL~~L~~kt~~L~~~ 48 (91)
T 3hd7_A 32 DQKLSELDDRADALQAG 48 (91)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHH
Confidence 45555555554444443
No 70
>3f42_A Protein HP0035; helicobacter pylori unknown-function, structural genomics, P protein structure initiative; HET: MSE; 1.78A {Helicobacter pylori}
Probab=50.03 E-value=15 Score=24.61 Aligned_cols=20 Identities=20% Similarity=0.400 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 034185 33 VQNLLQQMQSRFQTMSDSIV 52 (102)
Q Consensus 33 Vq~LLqQMQ~kFqtMS~~I~ 52 (102)
+++|+|+||.+++.+-.++-
T Consensus 8 m~~lmq~mQ~~m~~~QeeL~ 27 (99)
T 3f42_A 8 LGGLLDGMKKEFSQLEEKNK 27 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 46677999999998887765
No 71
>2vs0_A Virulence factor ESXA; secreted, four helical bundle, cell invasion; 1.4A {Staphylococcus aureus} PDB: 2vrz_A
Probab=49.76 E-value=39 Score=20.15 Aligned_cols=17 Identities=18% Similarity=0.548 Sum_probs=6.6
Q ss_pred HhHHHHhhhHHHHHHHH
Q 034185 53 TKIDEMGNRINELEQSI 69 (102)
Q Consensus 53 ~RiDeMg~RIDdLEksI 69 (102)
..+..|-.-|+++.+.+
T Consensus 60 ~~~~~~~~~L~~i~~~L 76 (97)
T 2vs0_A 60 PKVEKFAQLLEEIKQQL 76 (97)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 72
>2fjc_A Antigen TPF1; mini ferritin, iron binding protein, metal transport; 2.50A {Treponema pallidum} SCOP: a.25.1.1
Probab=49.00 E-value=19 Score=24.59 Aligned_cols=30 Identities=17% Similarity=0.327 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHhhhHHHHH
Q 034185 37 LQQMQSRFQTMSDSIVTKIDEMGNRINELE 66 (102)
Q Consensus 37 LqQMQ~kFqtMS~~I~~RiDeMg~RIDdLE 66 (102)
+..+..+|+.++.+...-+|+++.||-.|+
T Consensus 44 f~~lh~~~ee~~~e~~~~aD~lAERI~~LG 73 (156)
T 2fjc_A 44 FKQVHELLEEYYVSVTEAFDTIAERLLQLG 73 (156)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 445678899999999999999999998775
No 73
>1sz7_A BET3 homolog, trafficking protein particle complex subunit 3; alpha-beta plait, trapp complex, palmitoylated, transport PR; HET: PLM; 1.55A {Homo sapiens} PDB: 2cfh_A* 2pwn_A* 3kxc_A* 1wc8_A* 2j3w_D* 2j3r_A* 2j3t_A* 1wc9_A* 2c0j_A*
Probab=48.91 E-value=21 Score=26.62 Aligned_cols=36 Identities=19% Similarity=0.378 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhHH
Q 034185 27 ADMTVFVQNLLQQMQSRFQTMSDSIVTKIDEMGNRIN 63 (102)
Q Consensus 27 ~dLT~~Vq~LLqQMQ~kFqtMS~~I~~RiDeMg~RID 63 (102)
.-++-.--.+.+|++.+++. .+.+..||+.||-+|=
T Consensus 26 s~f~lly~eiV~~~~~~~~~-~~ev~~rLe~mGy~IG 61 (200)
T 1sz7_A 26 ELFTLTYGALVTQLCKDYEN-DEDVNKQLDKMGFNIG 61 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHCS-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCC-HHHHHHHHHHhCHHHh
Confidence 33444456788899999987 5668999999998875
No 74
>2chp_A MRGA, metalloregulation DNA-binding stress protein; DNA-binding protein, DPS, dodecameric, ferritin; 2.0A {Bacillus subtilis}
Probab=48.48 E-value=19 Score=24.44 Aligned_cols=43 Identities=9% Similarity=0.371 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHhhhHHHHHH----HHHHHHHhhCCC
Q 034185 37 LQQMQSRFQTMSDSIVTKIDEMGNRINELEQ----SINDLRAEMGVE 79 (102)
Q Consensus 37 LqQMQ~kFqtMS~~I~~RiDeMg~RIDdLEk----sI~dLm~qaG~e 79 (102)
+..+..+|+.++.+...-+|+++.||-.|.- ++.++..-+.+.
T Consensus 43 f~~lh~~~ee~~~e~~~~~D~lAERI~~LGg~P~~~~~~~~~~s~i~ 89 (153)
T 2chp_A 43 FFTLHEKFEELYDHAAETVDTIAERLLAIGGQPVATVKEYTEHASIT 89 (153)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSHHHHHHHCSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHhHCCCC
Confidence 4456788999999999999999999988753 334444444433
No 75
>2bk6_A Non-heme iron-containing ferritin; DPS (DNA binding protein from starved cells), ferroxidase center, mutagenesis study; 2.19A {Listeria innocua} SCOP: a.25.1.1 PDB: 1qgh_A 2bjy_A 2iy4_A 2bkc_A
Probab=47.80 E-value=20 Score=24.36 Aligned_cols=30 Identities=10% Similarity=0.333 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHhhhHHHHH
Q 034185 37 LQQMQSRFQTMSDSIVTKIDEMGNRINELE 66 (102)
Q Consensus 37 LqQMQ~kFqtMS~~I~~RiDeMg~RIDdLE 66 (102)
+..+..+|+.++.+...-+|+++.||-.|.
T Consensus 39 f~~lh~~~ee~~~e~~~~~D~lAERI~~Lg 68 (156)
T 2bk6_A 39 FFTLHEKMDDLYSEFGEQMDEVAERLLAIG 68 (156)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 456688899999999999999999998775
No 76
>3iq1_A DPS family protein; csgid, SAD, niaid, metal transport, STRU genomics, center for structural genomics of infectious DISE; 1.67A {Vibrio cholerae o1 biovar el tor}
Probab=47.79 E-value=20 Score=24.52 Aligned_cols=31 Identities=26% Similarity=0.516 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHhhhHHHHHH
Q 034185 37 LQQMQSRFQTMSDSIVTKIDEMGNRINELEQ 67 (102)
Q Consensus 37 LqQMQ~kFqtMS~~I~~RiDeMg~RIDdLEk 67 (102)
+..+..+|+...+++..-+|+...||-.|.-
T Consensus 49 F~~lH~~~ee~~~~~~~~~D~lAERI~~LGg 79 (159)
T 3iq1_A 49 FFELHAKFEEIYTDLQLKIDELAERILTLSA 79 (159)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 3455777899999999999999999988764
No 77
>1bgf_A STAT-4; transcription factor, regulation, DNA-binding; 1.45A {Mus musculus} SCOP: a.90.1.1
Probab=47.74 E-value=11 Score=26.24 Aligned_cols=40 Identities=28% Similarity=0.429 Sum_probs=26.4
Q ss_pred hHHhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 034185 10 LLFWQDGHDSEDPKQSTADMTVFVQNLLQQMQSRFQTMSD 49 (102)
Q Consensus 10 ~~~~~~~~~s~dpkqs~~dLT~~Vq~LLqQMQ~kFqtMS~ 49 (102)
|-=|+.+++-.+..+.-..-+.++++||++|+.+...++.
T Consensus 35 LA~WIE~q~W~~~~~~e~~A~~l~~~Ll~eL~~~~~~~~~ 74 (124)
T 1bgf_A 35 LAQWIETQDWEVASNNETMATILLQNLLIQLDEQLGRVSK 74 (124)
T ss_dssp THHHHHHSCHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcccccccchHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 3445555543333334556688999999999999876543
No 78
>3rmi_A Chorismate mutase protein; emerald biostructures, structural genomics, seattle structur genomics center for infectious disease, ssgcid; 2.40A {Bartonella henselae}
Probab=47.62 E-value=34 Score=22.94 Aligned_cols=30 Identities=17% Similarity=0.398 Sum_probs=22.1
Q ss_pred HHHHHHHHhHHHHhhhHHHHHHHHHHHHHh
Q 034185 46 TMSDSIVTKIDEMGNRINELEQSINDLRAE 75 (102)
Q Consensus 46 tMS~~I~~RiDeMg~RIDdLEksI~dLm~q 75 (102)
.++...-..|++.=.+||+|-+.|-+|+.+
T Consensus 5 ~~~p~~~~~L~~lR~~ID~ID~~il~LL~~ 34 (114)
T 3rmi_A 5 MMQEKILSELAYLRQSIDNFDITLIHILAE 34 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCcchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566667888888888888888887764
No 79
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=47.27 E-value=44 Score=29.10 Aligned_cols=16 Identities=13% Similarity=0.281 Sum_probs=11.1
Q ss_pred hhHHHHHHHHHHHHHh
Q 034185 60 NRINELEQSINDLRAE 75 (102)
Q Consensus 60 ~RIDdLEksI~dLm~q 75 (102)
++|..|+++|.++..+
T Consensus 131 snIrvLQsnLedq~~k 146 (562)
T 3ghg_A 131 QHIQLLQKNVRAQLVD 146 (562)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6667777777777654
No 80
>3ak8_A DNA protection during starvation protein; DPS-like protein, dodecamer, iron-binding protein, metal BIN protein, oxidoreductase; HET: DNA; 1.25A {Salmonella enterica subsp} PDB: 3ak9_A* 1f33_A* 1f30_A* 1dps_A 1jts_A* 1jre_A* 1l8h_A* 1l8i_A* 4dyu_A*
Probab=46.65 E-value=21 Score=24.74 Aligned_cols=29 Identities=14% Similarity=0.307 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHhHHHHhhhHHHHH
Q 034185 38 QQMQSRFQTMSDSIVTKIDEMGNRINELE 66 (102)
Q Consensus 38 qQMQ~kFqtMS~~I~~RiDeMg~RIDdLE 66 (102)
..+..+|+.++.+...-+|+++.||-.|+
T Consensus 60 ~~lh~~~ee~~~e~~~~aD~lAERI~~LG 88 (167)
T 3ak8_A 60 IAVHEMLDGFRTALTDHLDTMAERAVQLG 88 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 34577889999999999999999988775
No 81
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=46.25 E-value=98 Score=25.33 Aligned_cols=54 Identities=17% Similarity=0.257 Sum_probs=33.2
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHhHHHHhhhHHHHHHHHHHHHHhh
Q 034185 22 PKQSTADMTVFVQNLLQQMQSRFQTMS-------DSIVTKIDEMGNRINELEQSINDLRAEM 76 (102)
Q Consensus 22 pkqs~~dLT~~Vq~LLqQMQ~kFqtMS-------~~I~~RiDeMg~RIDdLEksI~dLm~qa 76 (102)
++.+....|.....+++++.. ++++- ..+-.+++...++|+.|+..|..|+...
T Consensus 75 ~~d~~e~~tq~skkml~~~~~-~e~~~~~~~~~i~~l~~~~~~~~~~i~~l~~~i~~l~~~~ 135 (409)
T 1m1j_C 75 LPQSIEQLTQKSKKIIEEIIR-YENTILAHENTIQQLTDMHIMNSNKITQLKQKIAQLESHC 135 (409)
T ss_dssp CSSCHHHHHHHHHHHHHHHHH-THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred CCCchhhHHHHHHHHHHHHHH-HHHHhcchHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 333566778888777776543 33322 2233445566777888888888887653
No 82
>2xz3_A Maltose ABC transporter periplasmic protein, ENVE glycoprotein; viral protein, viral membrane fusion, hairpin, chimera; HET: MAL; 1.95A {Escherichia coli} PDB: 1mg1_A*
Probab=46.10 E-value=51 Score=25.49 Aligned_cols=42 Identities=17% Similarity=0.196 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHH-HhHHHHhhhHHHHHHHHHHHHHhh
Q 034185 35 NLLQQMQSRFQTMSDSIV-TKIDEMGNRINELEQSINDLRAEM 76 (102)
Q Consensus 35 ~LLqQMQ~kFqtMS~~I~-~RiDeMg~RIDdLEksI~dLm~qa 76 (102)
..|++++.+.+.+-.+-. .-+++...-|+.+++||..|=.+.
T Consensus 360 eal~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 402 (463)
T 2xz3_A 360 AALAAAQTNAAALSHQRLTSLIHVLEQDQQRLITAINQTHYNL 402 (463)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346666777665444333 334777888888889988886653
No 83
>2yjk_A AFP, DPS; metal-binding protein, iron uptake, ferritin fold; 2.00A {Microbacterium arborescens} PDB: 2yjj_A
Probab=46.01 E-value=22 Score=24.42 Aligned_cols=30 Identities=13% Similarity=0.179 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHhhhHHHHH
Q 034185 37 LQQMQSRFQTMSDSIVTKIDEMGNRINELE 66 (102)
Q Consensus 37 LqQMQ~kFqtMS~~I~~RiDeMg~RIDdLE 66 (102)
+..+..+|+.++.+...-+|+++.||-.|+
T Consensus 51 f~~lh~~~ee~~~e~~~~aD~lAERI~~LG 80 (161)
T 2yjk_A 51 FIAIHELLDSVVAHAQDYADTAAERIVALG 80 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 345578899999999999999999998775
No 84
>1rtm_1 Mannose-binding protein-A; lectin; 1.80A {Rattus norvegicus} SCOP: d.169.1.1 h.1.1.1 PDB: 1kwu_A* 1kwv_A* 1kwt_A* 1kwx_A* 1kwy_A* 1kx1_A* 1kww_A 1kwz_A* 1kx0_A* 3kmb_1* 1kmb_1* 2kmb_1* 4kmb_1* 1afb_1* 1afa_1* 1afd_1 1bch_1* 1bcj_1* 1fif_A 1fih_A*
Probab=45.70 E-value=24 Score=22.92 Aligned_cols=25 Identities=24% Similarity=0.282 Sum_probs=19.2
Q ss_pred HHHhHHHHhhhHHHHHHHHHHHHHh
Q 034185 51 IVTKIDEMGNRINELEQSINDLRAE 75 (102)
Q Consensus 51 I~~RiDeMg~RIDdLEksI~dLm~q 75 (102)
+..||..|-.+|+.|++.+..|...
T Consensus 2 ~~~~l~~l~~~~~~l~~~l~~l~~~ 26 (149)
T 1rtm_1 2 IEVKLANMEAEINTLKSKLELTNKL 26 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4567888888888888888777763
No 85
>2z90_A Starvation-inducible DNA-binding protein or FINE tangled PILI major subunit; quarternary assembly, ferroxidation; 2.40A {Mycobacterium smegmatis str}
Probab=45.65 E-value=22 Score=24.45 Aligned_cols=30 Identities=13% Similarity=0.348 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHhhhHHHHH
Q 034185 37 LQQMQSRFQTMSDSIVTKIDEMGNRINELE 66 (102)
Q Consensus 37 LqQMQ~kFqtMS~~I~~RiDeMg~RIDdLE 66 (102)
+..+..+|+.++.+...-+|+++.||-.|+
T Consensus 49 f~~lh~~~ee~~~e~~~~aD~lAERIl~LG 78 (161)
T 2z90_A 49 FRDLHLQLDELVDFAREGSDTIAERMRALD 78 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 345577888999999999999999987775
No 86
>4eve_A Neutrophil-activating protein; dodecamer, four-helix bundle, metal transport; 2.10A {Helicobacter pylori} PDB: 4evd_A 3t9j_A 3ta8_A 4evb_A 4evc_A 1ji4_A
Probab=45.57 E-value=22 Score=24.74 Aligned_cols=44 Identities=11% Similarity=0.255 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHhhhHHHHHH----HHHHHHHhhCCCC
Q 034185 37 LQQMQSRFQTMSDSIVTKIDEMGNRINELEQ----SINDLRAEMGVEG 80 (102)
Q Consensus 37 LqQMQ~kFqtMS~~I~~RiDeMg~RIDdLEk----sI~dLm~qaG~e~ 80 (102)
+..+..+|+...+++..-+|++..||-.|.- +..++..-+.+.+
T Consensus 53 F~~lH~~~ee~~~e~~~~~D~lAERI~~LGg~P~~t~~~~~~~s~i~e 100 (164)
T 4eve_A 53 FFNVHKATEEIYEEFADMFDDLAERIVQLGHHPLVTLSEAIKLTRVKE 100 (164)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHCCSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHcCCCc
Confidence 4556778999999999999999999988764 3444544444443
No 87
>1gl2_A Endobrevin; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1
Probab=45.31 E-value=49 Score=20.02 Aligned_cols=19 Identities=26% Similarity=0.475 Sum_probs=11.4
Q ss_pred HhhhHHHHHHHHHHHHHhh
Q 034185 58 MGNRINELEQSINDLRAEM 76 (102)
Q Consensus 58 Mg~RIDdLEksI~dLm~qa 76 (102)
=|.|||+|...=.+|..++
T Consensus 35 RgekLd~L~~ks~~L~~~s 53 (65)
T 1gl2_A 35 RGENLDHLRNKTEDLEATS 53 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHH
Confidence 3666666666666665543
No 88
>2hn1_A CORA, magnesium and cobalt transporter; integral membrane protein fragment, metal transporter protei divalent cations, metal transport; 2.90A {Archaeoglobus fulgidus}
Probab=45.22 E-value=25 Score=25.35 Aligned_cols=18 Identities=17% Similarity=0.370 Sum_probs=9.9
Q ss_pred HHhHHHHhhhHHHHHHHH
Q 034185 52 VTKIDEMGNRINELEQSI 69 (102)
Q Consensus 52 ~~RiDeMg~RIDdLEksI 69 (102)
+.-+++++.+||+||..|
T Consensus 186 ~~~l~~i~~~id~lE~~l 203 (266)
T 2hn1_A 186 FEALLKISDEIEVLEDEV 203 (266)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334555556666666554
No 89
>2d4y_A HAP1, flagellar HOOK-associated protein 1; multi-domain protein, alpha-helical bundle, complex all- beta folds, structural protein; 2.10A {Salmonella typhimurium}
Probab=44.95 E-value=82 Score=25.02 Aligned_cols=40 Identities=13% Similarity=0.261 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHhh
Q 034185 37 LQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDLRAEM 76 (102)
Q Consensus 37 LqQMQ~kFqtMS~~I~~RiDeMg~RIDdLEksI~dLm~qa 76 (102)
|+++...++.+-..+-..|...-.+|+.|=++|++|-.|.
T Consensus 80 ~n~~~~~L~~~~~~~n~~i~~~V~~iN~l~~qIa~LN~qI 119 (463)
T 2d4y_A 80 FKTTDQYLRDQDKQVNIAIGSSVAQINNYAKQIANLNDQI 119 (463)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666677777777777777778888888888877664
No 90
>3eh0_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltransferase; LPXD, LEFT-handed parallel beta helix, acyl carrier protein, antibiotic resistance; 2.60A {Escherichia coli}
Probab=44.62 E-value=10 Score=28.92 Aligned_cols=24 Identities=33% Similarity=0.667 Sum_probs=19.5
Q ss_pred HHHHHhHHHHhhhHHHHHHHHHHH
Q 034185 49 DSIVTKIDEMGNRINELEQSINDL 72 (102)
Q Consensus 49 ~~I~~RiDeMg~RIDdLEksI~dL 72 (102)
...+.|+++|-+|+.+|||.+..|
T Consensus 317 ~~~~~~l~~~~~~~~~l~~~~~~l 340 (341)
T 3eh0_A 317 AALVMNIDDMSKRLKSLERKVNQQ 340 (341)
T ss_dssp HHHHHTHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHhHHHHHHHHHHHHHHHhhc
Confidence 445688999999999999987643
No 91
>1loi_A Cyclic 3',5'-AMP specific phosphodiesterase RD1; hydrolase, C-AMP phosphodiesterase; NMR {Rattus norvegicus} SCOP: j.51.1.1
Probab=44.58 E-value=4.2 Score=22.12 Aligned_cols=14 Identities=57% Similarity=1.440 Sum_probs=10.8
Q ss_pred eehhchh-hhHHhhc
Q 034185 2 FCLICSN-WLLFWQD 15 (102)
Q Consensus 2 ~~~~~~~-~~~~~~~ 15 (102)
||-.||. ||.=|-|
T Consensus 7 fcetcskpwlvgwwd 21 (26)
T 1loi_A 7 FCETCSKPWLVGWWD 21 (26)
T ss_dssp HHHTSSCTTGGGGHH
T ss_pred HHHhcCCchhhhhHH
Confidence 8999984 8877754
No 92
>3coq_A Regulatory protein GAL4; helix bundle, protein-DNA complex; HET: DNA; 2.40A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1
Probab=44.44 E-value=21 Score=21.63 Aligned_cols=21 Identities=24% Similarity=0.313 Sum_probs=15.6
Q ss_pred hHHHHhhhHHHHHHHHHHHHH
Q 034185 54 KIDEMGNRINELEQSINDLRA 74 (102)
Q Consensus 54 RiDeMg~RIDdLEksI~dLm~ 74 (102)
.++++-.||+.||..|..|..
T Consensus 46 ~~~~L~~r~~~le~~l~~l~~ 66 (89)
T 3coq_A 46 HLTEVESRLERLEQLFLLIFP 66 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHHHHcC
Confidence 456667788888888887754
No 93
>3aad_A Transcription initiation factor TFIID subunit 1; protein-protein complex, bromodomain, transcription, transcr regulation, chromatin regulator, transcription-C complex; 3.30A {Homo sapiens}
Probab=44.43 E-value=75 Score=24.08 Aligned_cols=23 Identities=17% Similarity=0.371 Sum_probs=16.7
Q ss_pred hHHHHhhhHHHHHHHHHHHHHhh
Q 034185 54 KIDEMGNRINELEQSINDLRAEM 76 (102)
Q Consensus 54 RiDeMg~RIDdLEksI~dLm~qa 76 (102)
++.++-..+..||++|+..-..|
T Consensus 266 ~~~~~~~~l~~le~~i~~~~~~~ 288 (292)
T 3aad_A 266 TLTEYDEHLTQLEKDICTAKEAA 288 (292)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555568899999998776654
No 94
>2c2j_A DNA-binding stress response protein; DNA-binding protein, DPS; 2.05A {Deinococcus radiodurans} PDB: 2c6r_A
Probab=44.30 E-value=22 Score=26.27 Aligned_cols=30 Identities=13% Similarity=0.164 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHhhhHHHHH
Q 034185 37 LQQMQSRFQTMSDSIVTKIDEMGNRINELE 66 (102)
Q Consensus 37 LqQMQ~kFqtMS~~I~~RiDeMg~RIDdLE 66 (102)
+..+..+|+.+..+...-+|+++.||-.|+
T Consensus 78 F~~LHe~fee~~~e~~~haD~lAERIl~LG 107 (211)
T 2c2j_A 78 WYTLHELLQDHYEGISKFADDVAERQLSVG 107 (211)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 345578899999999999999999998775
No 95
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=44.24 E-value=56 Score=25.96 Aligned_cols=28 Identities=14% Similarity=0.185 Sum_probs=21.6
Q ss_pred HHHHhHHHHhhhHHHHHHHHHHHHHhhC
Q 034185 50 SIVTKIDEMGNRINELEQSINDLRAEMG 77 (102)
Q Consensus 50 ~I~~RiDeMg~RIDdLEksI~dLm~qaG 77 (102)
.+-.+|+.+.++|++|+..|.+|+....
T Consensus 30 ~L~~~l~~~~~~i~~l~~~i~~l~~~~~ 57 (323)
T 1lwu_C 30 ELSEMWRVNQQFVTRLQQQLVDIRQTCS 57 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445667788899999999999988643
No 96
>3kwo_A Putative bacterioferritin; alpha-helix, bacterial ferritin fold, structural genomics, center for structural genomics of infectious diseases; 1.99A {Campylobacter jejuni} SCOP: a.25.1.0
Probab=43.88 E-value=29 Score=23.48 Aligned_cols=43 Identities=9% Similarity=0.125 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHhhhHHHHHH----HHHHHHHhhCCC
Q 034185 37 LQQMQSRFQTMSDSIVTKIDEMGNRINELEQ----SINDLRAEMGVE 79 (102)
Q Consensus 37 LqQMQ~kFqtMS~~I~~RiDeMg~RIDdLEk----sI~dLm~qaG~e 79 (102)
+..+..+|+...+++..-+|+...||-.|.- +..++..-+.+.
T Consensus 36 F~~lH~~~ee~~~~~~~~~D~iAERI~~LGg~P~~t~~~~~~~s~i~ 82 (152)
T 3kwo_A 36 FFSIHEYTEKAYEEMAELFDSCAERVLQLGEKAITCQKVLMENAKSP 82 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCHHHHHHHCCSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHhHCCCC
Confidence 4567888999999999999999999988764 334444444443
No 97
>4akv_A Sorting nexin-33; transport protein, organelle biogenesis; 2.65A {Homo sapiens}
Probab=43.69 E-value=57 Score=25.72 Aligned_cols=38 Identities=5% Similarity=0.203 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHhHHHH-hhhHHHHHHHHHHHHH
Q 034185 37 LQQMQSRFQTMSDSIVTKIDEM-GNRINELEQSINDLRA 74 (102)
Q Consensus 37 LqQMQ~kFqtMS~~I~~RiDeM-g~RIDdLEksI~dLm~ 74 (102)
+++++.||+.+|..+..-|+.- ..|+.|+-++|.+.+.
T Consensus 325 ~~e~~~r~e~IS~~~~~El~rF~~~Rv~Dfk~~l~eyle 363 (386)
T 4akv_A 325 ADGIRRRCRVVGFALQAEMNHFHQRRELDFKHMMQNYLR 363 (386)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578999999999999888665 7889999999888765
No 98
>2wlu_A DPS-like peroxide resistance protein; DNA-binding, oxidoreductase; 1.94A {Streptococcus pyogenes} PDB: 2wla_A
Probab=43.64 E-value=25 Score=24.70 Aligned_cols=30 Identities=17% Similarity=0.428 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHhhhHHHHH
Q 034185 37 LQQMQSRFQTMSDSIVTKIDEMGNRINELE 66 (102)
Q Consensus 37 LqQMQ~kFqtMS~~I~~RiDeMg~RIDdLE 66 (102)
+..+..+|+.++.+...-+|+++.||-.|+
T Consensus 58 f~~lh~~~ee~~~e~~~~aD~lAERIl~LG 87 (175)
T 2wlu_A 58 FLYLHPKMDELLDSLNANLDEVSERLITIG 87 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 345577788999999999999999988775
No 99
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=43.56 E-value=97 Score=25.83 Aligned_cols=36 Identities=14% Similarity=0.312 Sum_probs=20.0
Q ss_pred HHHhhhHHHHHHHHHHHHHh-----hCCCCCCCCCCCCCCC
Q 034185 56 DEMGNRINELEQSINDLRAE-----MGVEGSPSPLTPSKTN 91 (102)
Q Consensus 56 DeMg~RIDdLEksI~dLm~q-----aG~e~~p~~s~~~~~~ 91 (102)
-++..+|.+||+.+.++-.+ ..+.+.|.+++|.-+.
T Consensus 114 ~~l~~~i~~le~~~~~~~~~~~~~l~~iPN~~~~~vP~g~~ 154 (484)
T 3lss_A 114 KDLSDQVAGLAKEAQQLEEERDKLMLNVGNILHESVPIAQD 154 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCTTSCCCSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccCCCCCC
Confidence 33445555555444443222 2477888888886543
No 100
>4ioe_A Secreted protein ESXB; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; HET: MSE; 1.44A {Bacillus anthracis} PDB: 4iog_A
Probab=43.55 E-value=36 Score=20.39 Aligned_cols=18 Identities=0% Similarity=0.126 Sum_probs=8.6
Q ss_pred HhHHHHhhhHHHHHHHHH
Q 034185 53 TKIDEMGNRINELEQSIN 70 (102)
Q Consensus 53 ~RiDeMg~RIDdLEksI~ 70 (102)
..+..+...|+++.+.+.
T Consensus 63 ~~~~~~~~~L~~i~~~L~ 80 (93)
T 4ioe_A 63 QAMQQYIPILEGISTDLK 80 (93)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344455555555544443
No 101
>1kmi_Z CHEZ, chemotaxis protein CHEZ; four-helix bundle, signaling protein; HET: BCN; 2.90A {Escherichia coli} SCOP: h.4.11.1
Probab=43.46 E-value=17 Score=27.14 Aligned_cols=34 Identities=21% Similarity=0.358 Sum_probs=24.6
Q ss_pred HHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHhhCCCC
Q 034185 44 FQTMSDSIVTKIDEMGNRINELEQSINDLRAEMGVEG 80 (102)
Q Consensus 44 FqtMS~~I~~RiDeMg~RIDdLEksI~dLm~qaG~e~ 80 (102)
||.+..|+|.|+=.+ |.++|+.|..|+...|.+.
T Consensus 141 FQDLTGQ~I~KVi~l---v~~vE~~L~~ll~~~~~~~ 174 (214)
T 1kmi_Z 141 FQDLTGQVIKRMMDV---IQEIERQLLMVLLENIPEQ 174 (214)
T ss_dssp HHHHHHHHHHHHHHH---HHHHHHTTTTTTC------
T ss_pred cchHHHHHHHHHHHH---HHHHHHHHHHHHHHhCCcc
Confidence 999999999988655 7789999999998877554
No 102
>1xwm_A PHOU, phosphate uptake regulator; negative phosphate uptake regulator, structural genomics, protein structure initiative, PSI; 2.50A {Geobacillus stearothermophilus} SCOP: a.7.12.1
Probab=43.31 E-value=74 Score=21.84 Aligned_cols=49 Identities=24% Similarity=0.317 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHh
Q 034185 27 ADMTVFVQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDLRAE 75 (102)
Q Consensus 27 ~dLT~~Vq~LLqQMQ~kFqtMS~~I~~RiDeMg~RIDdLEksI~dLm~q 75 (102)
..|...|...|...-.-|.+-......++-++-.+||.|+..|......
T Consensus 17 ~~M~~~v~~ml~~a~~al~~~d~~~a~~v~~~d~~iD~l~~~i~~~~~~ 65 (217)
T 1xwm_A 17 IEMGRLTEVALQQAIEAFQTQNANLAMAVIDGDGSIDALEEEVNDFALW 65 (217)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 3455566666666666665555566677777788899999998876554
No 103
>3pmo_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltr; lipid A biosynthesis pathway, transferase; 1.30A {Pseudomonas aeruginosa}
Probab=43.18 E-value=13 Score=28.94 Aligned_cols=23 Identities=22% Similarity=0.598 Sum_probs=17.4
Q ss_pred HHHHhHHHHhhhHHHHHHHHHHH
Q 034185 50 SIVTKIDEMGNRINELEQSINDL 72 (102)
Q Consensus 50 ~I~~RiDeMg~RIDdLEksI~dL 72 (102)
..+.|+.+|-+|+++|||.+..|
T Consensus 340 ~~~~~l~~~~~~~~~l~k~~~~~ 362 (372)
T 3pmo_A 340 ARIRQLDDMARRLQQLEKRLAAV 362 (372)
T ss_dssp HHHHTHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 44688999999999999988765
No 104
>2bjn_A TPC6, trafficking protein particle complex subunit 6B; trapp complex, tethering, transport protein; 1.7A {Homo sapiens} PDB: 3kxc_C* 2cfh_C*
Probab=43.01 E-value=11 Score=26.80 Aligned_cols=32 Identities=16% Similarity=0.342 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHH---HHHHHhHHHHhhhH
Q 034185 31 VFVQNLLQQMQSRFQTMS---DSIVTKIDEMGNRI 62 (102)
Q Consensus 31 ~~Vq~LLqQMQ~kFqtMS---~~I~~RiDeMg~RI 62 (102)
-..-.+.++++.++.+.. +.+..||+.||-+|
T Consensus 11 ~l~~ElV~~~~~~~~~~~~~~~~v~~~Le~mGy~i 45 (160)
T 2bjn_A 11 LLHNEMVSGVYKSAEQGEVENGRCITKLENMGFRV 45 (160)
T ss_dssp HHHHHHHHHHHHTCCTTTTTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCchhhHHHHHHHHHHhhhHh
Confidence 344567788888887765 36889999998776
No 105
>3oj5_A Ferritin family protein; ferroxidase, cytosol, oxidoreductase; 2.85A {Mycobacterium tuberculosis} PDB: 3qd8_A
Probab=42.63 E-value=78 Score=21.82 Aligned_cols=41 Identities=22% Similarity=0.338 Sum_probs=13.5
Q ss_pred HHHHHHHHhHHHHhhhHHHHHHHHHHHHHhhCCCCCCCCCCCCCC
Q 034185 46 TMSDSIVTKIDEMGNRINELEQSINDLRAEMGVEGSPSPLTPSKT 90 (102)
Q Consensus 46 tMS~~I~~RiDeMg~RIDdLEksI~dLm~qaG~e~~p~~s~~~~~ 90 (102)
.+-..++.+|+.||..+=.+++.++ .+.+... +++.+|+..
T Consensus 137 ~~l~~~l~~l~~~g~~l~~~d~~l~---~~~~~~~-~~~~~~~~~ 177 (189)
T 3oj5_A 137 ALMATLVRVADRAGANLFELENFVA---REVDVAP-AASGAPHAA 177 (189)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHH---HHC--------------
T ss_pred HHHHHHHHHHHHhCchHhHHHHHHH---HhhCCCC-CCCCCCccc
Confidence 3344445555555554444555443 3344444 444444443
No 106
>1aq5_A Matrilin-1, CMP, cartilage matrix protein; coiled-coil, heptad repeat, interchain disulfide bonds, oligomerization domain, trimer; NMR {Gallus gallus} SCOP: h.1.6.1
Probab=42.60 E-value=55 Score=19.78 Aligned_cols=33 Identities=18% Similarity=0.498 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhH
Q 034185 26 TADMTVFVQNLLQQMQSRFQTMSDSIVTKIDEMGNRI 62 (102)
Q Consensus 26 ~~dLT~~Vq~LLqQMQ~kFqtMS~~I~~RiDeMg~RI 62 (102)
--.+-..|.+.|+.|..|...|+ .||..+..||
T Consensus 14 lv~FQ~~v~~~l~~Lt~kL~~vt----~rle~lEnrl 46 (47)
T 1aq5_A 14 IVKFQTKVEELINTLQQKLEAVA----KRIEALENKI 46 (47)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhhc
Confidence 34556667888888888876554 6777777765
No 107
>1o9r_A Agrobacterium tumefaciens DPS; iron-binding protein, DNA protection from oxidative damage, DNA-binding, iron- binding protein; 1.45A {Agrobacterium tumefaciens} SCOP: a.25.1.1 PDB: 3ge4_A*
Probab=42.34 E-value=27 Score=23.83 Aligned_cols=30 Identities=13% Similarity=0.259 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHhhhHHHHH
Q 034185 37 LQQMQSRFQTMSDSIVTKIDEMGNRINELE 66 (102)
Q Consensus 37 LqQMQ~kFqtMS~~I~~RiDeMg~RIDdLE 66 (102)
+..+..+|+....+...-.|+++.||-.|.
T Consensus 48 f~~lh~~~ee~~~e~~~~aD~lAERI~~LG 77 (162)
T 1o9r_A 48 FIAVHELLDTFRTQLDNHGDTIAERVVQLG 77 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 344678899999999999999999998775
No 108
>2yw6_A DNA protection during starvation protein; DNA-binding protein, quarternary assembly, ferroxidation, oxidoreductase; HET: DNA; 2.53A {Mycobacterium smegmatis} SCOP: a.25.1.1 PDB: 1vei_A 1vel_A 1veq_A 1uvh_A* 2yw7_A
Probab=42.34 E-value=26 Score=24.80 Aligned_cols=30 Identities=17% Similarity=0.234 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHhhhHHHHH
Q 034185 37 LQQMQSRFQTMSDSIVTKIDEMGNRINELE 66 (102)
Q Consensus 37 LqQMQ~kFqtMS~~I~~RiDeMg~RIDdLE 66 (102)
+..+..+|+.+..+...-+|+++.||-.|.
T Consensus 47 F~~lh~~~ee~~~e~~~haD~lAERIl~LG 76 (183)
T 2yw6_A 47 FIGVHEMIDPQVELVRGYADEVAERIATLG 76 (183)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 345678899999999999999999998775
No 109
>2nps_A VAMP-4, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Mus musculus}
Probab=42.22 E-value=46 Score=20.59 Aligned_cols=43 Identities=19% Similarity=0.417 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHhh
Q 034185 26 TADMTVFVQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDLRAEM 76 (102)
Q Consensus 26 ~~dLT~~Vq~LLqQMQ~kFqtMS~~I~~RiDeMg~RIDdLEksI~dLm~qa 76 (102)
...+..-|+.+-.-|....+. |+.| |.|||+|...=.+|-.++
T Consensus 10 l~~vq~el~ev~~iM~~NI~~----vL~R----gekLd~L~~ks~~L~~~s 52 (74)
T 2nps_A 10 IKHVQNQVDEVIDVMQENITK----VIER----GERLDELQDKSESLSDNA 52 (74)
T ss_dssp SHHHHTTHHHHHHHHHHHHHH----HHHH----HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHh----hhHHHHHHHHHHHHHHHH
Confidence 344444455554445444432 2322 555666655555555443
No 110
>1ji5_A DLP-1; dodecamer, four-helix bundle, metal transport; 2.50A {Bacillus anthracis} SCOP: a.25.1.1
Probab=41.13 E-value=37 Score=21.88 Aligned_cols=31 Identities=23% Similarity=0.434 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHhhhHHHHHH
Q 034185 37 LQQMQSRFQTMSDSIVTKIDEMGNRINELEQ 67 (102)
Q Consensus 37 LqQMQ~kFqtMS~~I~~RiDeMg~RIDdLEk 67 (102)
+..+..+|...+.+...-+|.+..||-.|.-
T Consensus 32 f~~l~~~~~~~~~ee~~had~laeri~~lGg 62 (142)
T 1ji5_A 32 FFTLHEKFEELYTESATHIDEIAERILAIGG 62 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 4556788888888888888999988887753
No 111
>1sum_B Phosphate transport system protein PHOU homolog 2; ABC transport, PST, structural genomics, berkeley STRU genomics center, BSGC; 2.00A {Thermotoga maritima} SCOP: a.7.12.1
Probab=40.92 E-value=91 Score=21.86 Aligned_cols=48 Identities=13% Similarity=0.258 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHh
Q 034185 28 DMTVFVQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDLRAE 75 (102)
Q Consensus 28 dLT~~Vq~LLqQMQ~kFqtMS~~I~~RiDeMg~RIDdLEksI~dLm~q 75 (102)
.|...|...|...-.-|.+-......++-+.-.+||.||..|......
T Consensus 18 ~M~~~v~~~l~~a~~al~~~d~~~a~~V~~~d~~iD~l~~~I~~~~~~ 65 (235)
T 1sum_B 18 KAGWFIEKMFRNSISSLVERNESLAREVIADEEVVDQMEVEIQEKAME 65 (235)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 444555555555555554444566777777788899999988876654
No 112
>2c41_A DPS family DNA-binding stress response protein; iron-binding/oxidation protein, DPS (DNA-binding proteins from starved cells); HET: PG4 PGE; 1.81A {Thermosynechococcus elongatus}
Probab=40.76 E-value=36 Score=22.79 Aligned_cols=30 Identities=20% Similarity=0.405 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHhhhHHHHH
Q 034185 37 LQQMQSRFQTMSDSIVTKIDEMGNRINELE 66 (102)
Q Consensus 37 LqQMQ~kFqtMS~~I~~RiDeMg~RIDdLE 66 (102)
+..+..+|...+.+...-+|++..||-.|.
T Consensus 41 f~~lh~~~~~~~~ee~~had~iaErI~~lG 70 (158)
T 2c41_A 41 FRDLHLLFEEQGSEVFAMIDELAERSLMLD 70 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 455678899999999999999999987763
No 113
>3b5n_A Synaptobrevin homolog 1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=40.70 E-value=57 Score=19.43 Aligned_cols=18 Identities=22% Similarity=0.551 Sum_probs=10.6
Q ss_pred hhhHHHHHHHHHHHHHhh
Q 034185 59 GNRINELEQSINDLRAEM 76 (102)
Q Consensus 59 g~RIDdLEksI~dLm~qa 76 (102)
|.|||+|...=.+|-.++
T Consensus 29 gekLd~L~~ks~~L~~~s 46 (61)
T 3b5n_A 29 GERLTSIEDKADNLAVSA 46 (61)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHH
Confidence 566666666655555543
No 114
>4i0x_B ESAT-6-like protein MAB_3113; structural genomics, PSI-2, protein structure initiative, in center for structure and function innovation; HET: BME GOL; 1.96A {Mycobacterium abscessus}
Probab=40.60 E-value=63 Score=20.27 Aligned_cols=22 Identities=14% Similarity=0.386 Sum_probs=9.0
Q ss_pred HHHHHHHHHHhHHHHhhhHHHH
Q 034185 44 FQTMSDSIVTKIDEMGNRINEL 65 (102)
Q Consensus 44 FqtMS~~I~~RiDeMg~RIDdL 65 (102)
+...+.+|-..|++|-++|+.|
T Consensus 23 ~~~~~~~i~~~l~~L~~~v~~L 44 (103)
T 4i0x_B 23 ARGFKEFVTENLDQLESRAQKL 44 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444433
No 115
>3okg_A Restriction endonuclease S subunits; coiled-coil, type I methyltransferase, DNA binding, DNA BIND protein; 1.95A {Thermoanaerobacter tengcongensis}
Probab=39.59 E-value=63 Score=23.65 Aligned_cols=36 Identities=14% Similarity=0.192 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHh
Q 034185 40 MQSRFQTMSDSIVTKIDEMGNRINELEQSINDLRAE 75 (102)
Q Consensus 40 MQ~kFqtMS~~I~~RiDeMg~RIDdLEksI~dLm~q 75 (102)
-|.|.-..-+.+..+||..-+.+..|++.+..|+.+
T Consensus 176 eQ~~I~~~l~~~~~~i~~~~~~~~~~~~~~~~l~q~ 211 (412)
T 3okg_A 176 EQRRIVAKVEALMERVREVRRLRAEAQKDTELLMQT 211 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666666666677777777777777777666543
No 116
>2yo3_A General control protein GCN4, putative inner MEMB protein, general control protein...; HANS motif, YADA-like head, ylhead; 2.00A {Saccharomyces cerevisiae}
Probab=39.42 E-value=1.1e+02 Score=24.22 Aligned_cols=41 Identities=12% Similarity=0.312 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHh
Q 034185 35 NLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDLRAE 75 (102)
Q Consensus 35 ~LLqQMQ~kFqtMS~~I~~RiDeMg~RIDdLEksI~dLm~q 75 (102)
..+++-....+.--.+|-.+|+...+|+..+|++|.++...
T Consensus 205 ~s~~~an~yTd~k~~~l~n~I~~V~n~~~q~~~~~~~~~~~ 245 (268)
T 2yo3_A 205 RSVEEANTYTDQKMGEMNSKIKGVENKMKQIEDKIEEILSK 245 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444445555667777777777777788888887653
No 117
>1jig_A DLP-2; dodecamer, four-helix bundle, metal transport; 1.46A {Bacillus anthracis} SCOP: a.25.1.1
Probab=39.37 E-value=40 Score=21.95 Aligned_cols=30 Identities=30% Similarity=0.480 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHhhhHHHHH
Q 034185 37 LQQMQSRFQTMSDSIVTKIDEMGNRINELE 66 (102)
Q Consensus 37 LqQMQ~kFqtMS~~I~~RiDeMg~RIDdLE 66 (102)
+..+...|...+.+...-+|++..||-.|.
T Consensus 36 f~~lh~~~~~~~~ee~~had~laeri~~lG 65 (146)
T 1jig_A 36 FFTLHEKFEEFYNEAGTYIDELAERILALE 65 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 344677788888888888999998887764
No 118
>1n1q_A DPS protein; four-helix bundle, unknown function; 2.20A {Brevibacillus brevis} SCOP: a.25.1.1
Probab=39.23 E-value=40 Score=22.10 Aligned_cols=30 Identities=13% Similarity=0.374 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHhhhHHHHH
Q 034185 37 LQQMQSRFQTMSDSIVTKIDEMGNRINELE 66 (102)
Q Consensus 37 LqQMQ~kFqtMS~~I~~RiDeMg~RIDdLE 66 (102)
+..+...|...+.+...-+|++..||-.|.
T Consensus 39 f~~lh~~~~~~~~ee~~had~laeri~~lG 68 (149)
T 1n1q_A 39 FFTLHEKFEELYTEASGHIDTLAERVLSIG 68 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 345677888888889999999999987764
No 119
>1xwm_A PHOU, phosphate uptake regulator; negative phosphate uptake regulator, structural genomics, protein structure initiative, PSI; 2.50A {Geobacillus stearothermophilus} SCOP: a.7.12.1
Probab=39.22 E-value=86 Score=21.52 Aligned_cols=48 Identities=13% Similarity=0.207 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHH
Q 034185 26 TADMTVFVQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDLR 73 (102)
Q Consensus 26 ~~dLT~~Vq~LLqQMQ~kFqtMS~~I~~RiDeMg~RIDdLEksI~dLm 73 (102)
..+|...|...++..-+-|.+.......++-++-.+||+|++.+..-.
T Consensus 119 l~~m~~~v~~~l~~a~~a~~~~d~~~A~~v~~~d~~iD~l~~~~~~~~ 166 (217)
T 1xwm_A 119 LVLMYRLATDMVSTAIAAYDREDASLAAQIADMDHRVDEQYGEMMASL 166 (217)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556677777777777777877666666777777788999988876543
No 120
>1cnt_1 CNTF, ciliary neurotrophic factor; cytokine, growth factor; 2.40A {Homo sapiens} SCOP: a.26.1.1
Probab=38.57 E-value=44 Score=25.35 Aligned_cols=50 Identities=14% Similarity=0.180 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHhhCCCCCCC
Q 034185 34 QNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDLRAEMGVEGSPS 83 (102)
Q Consensus 34 q~LLqQMQ~kFqtMS~~I~~RiDeMg~RIDdLEksI~dLm~qaG~e~~p~ 83 (102)
+.++++=|+.|.--+..+...|..+-.|...|=-+|+.||.-.|..-||.
T Consensus 88 ~~vledqq~~~~P~~~~l~~~L~~~~l~v~~la~~l~~im~~L~~~iPpe 137 (187)
T 1cnt_1 88 ARLLEDQQVHFTPTEGDFHQAIHTLLLQVAAFAYQIEELMILLEYKIPRN 137 (187)
T ss_dssp HHHHHHHHTTTSSSCSHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCC
T ss_pred HHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCC
Confidence 33444444444444455778899999999999999999999888655543
No 121
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=38.22 E-value=77 Score=25.18 Aligned_cols=17 Identities=6% Similarity=0.272 Sum_probs=10.8
Q ss_pred HhHHHHhhhHHHHHHHH
Q 034185 53 TKIDEMGNRINELEQSI 69 (102)
Q Consensus 53 ~RiDeMg~RIDdLEksI 69 (102)
.+|+++...|.+|+..+
T Consensus 40 ~~i~~l~~~i~~l~~~~ 56 (323)
T 1lwu_C 40 QFVTRLQQQLVDIRQTC 56 (323)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 56666666666666554
No 122
>2i0m_A Phosphate transport system protein PHOU; zinc-binding protein, structural genomics, PSI-2, PROT structure initiative; 2.40A {Streptococcus pneumoniae}
Probab=37.76 E-value=96 Score=21.18 Aligned_cols=49 Identities=12% Similarity=0.099 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHhh
Q 034185 28 DMTVFVQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDLRAEM 76 (102)
Q Consensus 28 dLT~~Vq~LLqQMQ~kFqtMS~~I~~RiDeMg~RIDdLEksI~dLm~qa 76 (102)
.|...|...|...-.-|.+-......++-+.-.+||.||..|.+.....
T Consensus 18 ~M~~~v~~~l~~a~~al~~~d~~~a~~v~~~d~~iD~l~~~I~~~~~~l 66 (216)
T 2i0m_A 18 GLGQLVLETASKALLALASKDKEMAELIINKDHAINQGQSAIELTCARL 66 (216)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555544445667777778888999999998887764
No 123
>3nvo_A Zinc transport protein ZNTB; alpha-beta-alpha sandwich, zinc efflux system, membrane, TRA protein; 2.30A {Salmonella enterica} PDB: 3nwi_A
Probab=37.05 E-value=20 Score=25.67 Aligned_cols=32 Identities=16% Similarity=0.416 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHH
Q 034185 31 VFVQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSI 69 (102)
Q Consensus 31 ~~Vq~LLqQMQ~kFqtMS~~I~~RiDeMg~RIDdLEksI 69 (102)
.++-.||..+-++|-.+ +++++.+||+||..|
T Consensus 147 ~ll~~lld~ivd~y~~~-------l~~l~~~id~lE~~l 178 (264)
T 3nvo_A 147 GWLVDVCDALTDHASEF-------IEELHDKIIDLEDNL 178 (264)
T ss_dssp HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
Confidence 45666666666666444 455555555555554
No 124
>2pyb_A NAPA, neutrophil activating protein; ferritin, DPS, four-helix bundle, metal transport; 2.60A {Borrelia burgdorferi}
Probab=36.89 E-value=19 Score=24.38 Aligned_cols=30 Identities=20% Similarity=0.226 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHhhhHHHHH
Q 034185 37 LQQMQSRFQTMSDSIVTKIDEMGNRINELE 66 (102)
Q Consensus 37 LqQMQ~kFqtMS~~I~~RiDeMg~RIDdLE 66 (102)
+..+..+|+.++.+...-+|+++.||-.|+
T Consensus 36 f~~lh~~~ee~~~e~~~~aD~lAERI~~Lg 65 (151)
T 2pyb_A 36 FFVIHKKTQKLYEYIEKIIDIVAERSRMLG 65 (151)
T ss_dssp THHHHHHHHHHHTTTHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 345677888888888888999999887664
No 125
>4egw_A Magnesium transport protein CORA; magnesium transporter, magnesium binding, metal transp; 2.50A {Methanocaldococcus jannaschii}
Probab=36.34 E-value=32 Score=25.13 Aligned_cols=15 Identities=7% Similarity=0.439 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHH
Q 034185 32 FVQNLLQQMQSRFQT 46 (102)
Q Consensus 32 ~Vq~LLqQMQ~kFqt 46 (102)
++-.||..+-++|-.
T Consensus 157 ll~~lld~ivd~y~~ 171 (280)
T 4egw_A 157 LLYHILNEITRSYSR 171 (280)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333444444444433
No 126
>1tjo_A Iron-rich DPSA-homolog protein; ferritin, low-iron, metal binding protein; 1.60A {Halobacterium salinarum} SCOP: a.25.1.1 PDB: 1moj_A 1tk6_A 1tko_A 1tkp_A
Probab=36.16 E-value=44 Score=23.26 Aligned_cols=29 Identities=14% Similarity=0.295 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHhHHHHhhhHHHHH
Q 034185 38 QQMQSRFQTMSDSIVTKIDEMGNRINELE 66 (102)
Q Consensus 38 qQMQ~kFqtMS~~I~~RiDeMg~RIDdLE 66 (102)
..+..+|...+.+...-+|++..||-.|.
T Consensus 61 ~~lh~~~ee~~~e~~~haD~laERI~~LG 89 (182)
T 1tjo_A 61 RDLHLFLGEAAETAEEVADELAERVQALG 89 (182)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 44577788889999999999999998875
No 127
>2xgw_A Peroxide resistance protein; metal binding protein; 2.10A {Streptococcus pyogenes}
Probab=36.14 E-value=36 Score=24.72 Aligned_cols=29 Identities=17% Similarity=0.420 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHhHHHHhhhHHHHH
Q 034185 38 QQMQSRFQTMSDSIVTKIDEMGNRINELE 66 (102)
Q Consensus 38 qQMQ~kFqtMS~~I~~RiDeMg~RIDdLE 66 (102)
..+..+|+.++.+...-+|+++.||-.|+
T Consensus 75 ~~LH~~~ee~~~e~~~haD~lAERIl~LG 103 (199)
T 2xgw_A 75 LYLHPKMDELLDSLNANLDEVSERLITIG 103 (199)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 45577888999999999999999988775
No 128
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=36.04 E-value=82 Score=19.93 Aligned_cols=45 Identities=9% Similarity=0.259 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHH
Q 034185 26 TADMTVFVQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDLRA 74 (102)
Q Consensus 26 ~~dLT~~Vq~LLqQMQ~kFqtMS~~I~~RiDeMg~RIDdLEksI~dLm~ 74 (102)
..+....|+.=...+..+-. .+-.+++....++.+|++.+..++.
T Consensus 68 ~~ea~~~L~~~~e~ie~~i~----~le~~~~~l~~~l~~lk~~l~~~~~ 112 (117)
T 2zqm_A 68 KDKAVAELKEKIETLEVRLN----ALERQEKKLNEKLKELTAQIQSALR 112 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 44444444444444443333 3346667777777777777777774
No 129
>3dyt_A Sorting nexin-9; 3-helix bundle, BAR domain, PX domain, phosphoprotein, protein transport, SH3 domain, transport, transport protein; 2.08A {Homo sapiens} PDB: 3dyu_A 2raj_A 2rai_A 2rak_A*
Probab=35.68 E-value=93 Score=24.07 Aligned_cols=38 Identities=24% Similarity=0.314 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHhHHHH-hhhHHHHHHHHHHHHH
Q 034185 37 LQQMQSRFQTMSDSIVTKIDEM-GNRINELEQSINDLRA 74 (102)
Q Consensus 37 LqQMQ~kFqtMS~~I~~RiDeM-g~RIDdLEksI~dLm~ 74 (102)
+++.+.||+.+|..+..-|+.- ..|+.|+-+++.+.+.
T Consensus 305 ~~~~~~r~e~is~~~~~El~rF~~~r~~Dfk~~l~~yl~ 343 (366)
T 3dyt_A 305 KQNMVKRVSIMSYALQAEMNHFHSNRIYDYNSVIRLYLE 343 (366)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4778899999999998777655 6779899888887765
No 130
>1yf2_A Type I restriction-modification enzyme, S subunit; structura genomics, PSI, protein structure initiative; 2.40A {Methanocaldococcus jannaschii} SCOP: d.287.1.2 d.287.1.2
Probab=35.62 E-value=94 Score=22.52 Aligned_cols=38 Identities=11% Similarity=0.171 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHhh
Q 034185 39 QMQSRFQTMSDSIVTKIDEMGNRINELEQSINDLRAEM 76 (102)
Q Consensus 39 QMQ~kFqtMS~~I~~RiDeMg~RIDdLEksI~dLm~qa 76 (102)
..|.+|...-+.+..+|+..-.+|+.|++-=..||.++
T Consensus 379 ~eQ~~I~~~l~~ld~~i~~~~~~~~~l~~~k~~Ll~~l 416 (425)
T 1yf2_A 379 EEQKQIAKILSSVDKSIELKKQKKEKLQRMKKKIMELL 416 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35778877777888888888888999988888888876
No 131
>2bbh_A Divalent cation transport-related protein; transporter, Mg, membrane, structural genomics, structural G consortium, SGC; HET: DMU; 1.85A {Thermotoga maritima} SCOP: d.328.1.1
Probab=35.16 E-value=27 Score=25.05 Aligned_cols=14 Identities=7% Similarity=0.323 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHH
Q 034185 34 QNLLQQMQSRFQTM 47 (102)
Q Consensus 34 q~LLqQMQ~kFqtM 47 (102)
-.||..+-++|-.+
T Consensus 174 ~~lld~ivd~y~~~ 187 (269)
T 2bbh_A 174 YSLIDALVDDYFVL 187 (269)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 44555555555433
No 132
>1fzc_B Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB: 1fzb_B* 1fza_B* 1fze_B* 1fzf_B* 1fzg_B* 1n86_B* 1n8e_B 2h43_B* 2hlo_B* 2hod_B* 2hpc_B* 2q9i_B* 2xnx_B 2xny_B 3e1i_B* 2z4e_B* 2oyh_B* 1ltj_B* 1rf0_B* 1lt9_B* ...
Probab=34.68 E-value=11 Score=29.90 Aligned_cols=25 Identities=12% Similarity=0.271 Sum_probs=20.3
Q ss_pred HHhHHHHhhhHHHHHHHHHHHHHhh
Q 034185 52 VTKIDEMGNRINELEQSINDLRAEM 76 (102)
Q Consensus 52 ~~RiDeMg~RIDdLEksI~dLm~qa 76 (102)
-..++.+..||..||..|..++...
T Consensus 36 q~~le~l~~KIq~Le~~v~~~~~~~ 60 (328)
T 1fzc_B 36 RSILENLRSKIQKLESDVSAQMEYC 60 (328)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3456788999999999999888764
No 133
>2c2u_A DPS, DNA-binding stress response protein; DNA-binding protein, iron; 1.1A {Deinococcus radiodurans} PDB: 2c2f_A 2f7n_A
Probab=34.38 E-value=32 Score=25.22 Aligned_cols=30 Identities=20% Similarity=0.410 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHhhhHHHHH
Q 034185 37 LQQMQSRFQTMSDSIVTKIDEMGNRINELE 66 (102)
Q Consensus 37 LqQMQ~kFqtMS~~I~~RiDeMg~RIDdLE 66 (102)
+..+..+|+.+..+...-+|++..||-.|+
T Consensus 91 F~~LHe~~ee~~~e~~~haD~lAERIl~LG 120 (207)
T 2c2u_A 91 FRDLHLAYDEFIAEIFPSIDEQAERLVALG 120 (207)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 345578899999999999999999998875
No 134
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=34.38 E-value=67 Score=21.87 Aligned_cols=32 Identities=6% Similarity=0.341 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHhHHHH---hhhHHHHHHHHHHHH
Q 034185 42 SRFQTMSDSIVTKIDEM---GNRINELEQSINDLR 73 (102)
Q Consensus 42 ~kFqtMS~~I~~RiDeM---g~RIDdLEksI~dLm 73 (102)
.+++.+-..+..+++.. -.+|.++++.+..|-
T Consensus 19 qql~~~~~~l~~~~~~L~~a~~~~~e~~~~l~~l~ 53 (151)
T 2zdi_C 19 QVLQAQAQILAQNLELLNLAKAEVQTVRETLENLK 53 (151)
T ss_dssp HHHTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666677788888 888999999988864
No 135
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=34.20 E-value=72 Score=18.97 Aligned_cols=25 Identities=24% Similarity=0.563 Sum_probs=17.5
Q ss_pred HHHhHHHHhhhHHHHHHHHHHHHHh
Q 034185 51 IVTKIDEMGNRINELEQSINDLRAE 75 (102)
Q Consensus 51 I~~RiDeMg~RIDdLEksI~dLm~q 75 (102)
+-.|-.||-.|..+||.-|+-|-++
T Consensus 8 LE~r~k~le~~naeLEervstLq~E 32 (42)
T 2oqq_A 8 LENRVKDLENKNSELEERLSTLQNE 32 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456677777888888877776554
No 136
>2olt_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; HET: MSE; 2.00A {Shewanella oneidensis} PDB: 2iiu_A*
Probab=33.87 E-value=1.2e+02 Score=21.21 Aligned_cols=49 Identities=16% Similarity=0.164 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--------HHHhHHHHhhhHHHHHHHHHHHHH
Q 034185 26 TADMTVFVQNLLQQMQSRFQTMSDS--------IVTKIDEMGNRINELEQSINDLRA 74 (102)
Q Consensus 26 ~~dLT~~Vq~LLqQMQ~kFqtMS~~--------I~~RiDeMg~RIDdLEksI~dLm~ 74 (102)
..++...+...++.+..=|..+..- =..++.++..+|+.||..+.++..
T Consensus 122 ~~~~~~~~~~~~~~~~~ai~~l~~l~e~~~~~~~~~~~~~~~~~i~~lE~~~D~l~~ 178 (227)
T 2olt_A 122 FIAYLQRCIDAVGLAQQVINELDDLLEAGFRGREVDFVAKMINELDIIEEDTDDLQI 178 (227)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSCCSSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555556666666655200 023334555555555555554443
No 137
>3uun_A Dystrophin; triple helical, cell structure and stability, cytoskeletal, structural protein; 2.30A {Homo sapiens}
Probab=33.40 E-value=81 Score=19.07 Aligned_cols=19 Identities=11% Similarity=0.212 Sum_probs=9.2
Q ss_pred HHHhHHHHhhhHHHHHHHH
Q 034185 51 IVTKIDEMGNRINELEQSI 69 (102)
Q Consensus 51 I~~RiDeMg~RIDdLEksI 69 (102)
|-.|++++..|-+.|-..+
T Consensus 83 i~~~l~~l~~rw~~L~~~~ 101 (119)
T 3uun_A 83 VQEQMNLLNSRWECLRVAS 101 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4445555555555544433
No 138
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=33.24 E-value=89 Score=19.50 Aligned_cols=22 Identities=0% Similarity=0.202 Sum_probs=11.6
Q ss_pred HhHHHHhhhHHHHHHHHHHHHH
Q 034185 53 TKIDEMGNRINELEQSINDLRA 74 (102)
Q Consensus 53 ~RiDeMg~RIDdLEksI~dLm~ 74 (102)
.+|..+..+++.+++.+.++-.
T Consensus 79 ~~i~~le~~~~~~~~~l~~lk~ 100 (107)
T 1fxk_A 79 LREKTIERQEERVMKKLQEMQV 100 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555543
No 139
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=32.91 E-value=1.1e+02 Score=20.28 Aligned_cols=47 Identities=17% Similarity=0.319 Sum_probs=34.4
Q ss_pred CHHHHHHHHHHHHHH------HHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHH
Q 034185 25 STADMTVFVQNLLQQ------MQSRFQTMSDSIVTKIDEMGNRINELEQSIND 71 (102)
Q Consensus 25 s~~dLT~~Vq~LLqQ------MQ~kFqtMS~~I~~RiDeMg~RIDdLEksI~d 71 (102)
++..+..-|++|+.+ .++....+-+.+|.|+|++++.-..|--.+..
T Consensus 3 ~~~gmgkevEnLi~EN~eLl~TKNaLnvvk~DLI~rvdELt~E~e~l~~El~s 55 (77)
T 2w83_C 3 DPEFMGREVENLILENTQLLETKNALNIVKNDLIAKVDELTCEKDVLQGELEA 55 (77)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 466777778887653 45667788899999999999877666544443
No 140
>1huw_A Human growth hormone; 2.00A {Homo sapiens} SCOP: a.26.1.1 PDB: 1kf9_A 1hwg_A 3hhr_A 1a22_A 1bp3_A 1hwh_A 1axi_A 1hgu_A 1z7c_A
Probab=32.38 E-value=32 Score=25.12 Aligned_cols=53 Identities=17% Similarity=0.223 Sum_probs=39.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HhHH-HHhhhHHHHHHHHHHHHHhhC
Q 034185 25 STADMTVFVQNLLQQMQSRFQTMSDSIV-----TKID-EMGNRINELEQSINDLRAEMG 77 (102)
Q Consensus 25 s~~dLT~~Vq~LLqQMQ~kFqtMS~~I~-----~RiD-eMg~RIDdLEksI~dLm~qaG 77 (102)
+..||-.++-.||+--.+=.+.++..+. +.=| ++.+|+.+||..|..|+.+..
T Consensus 71 s~~~LL~~~l~Ll~SW~~PL~~L~~~l~~~~~~~~~~~~i~~k~k~Leegi~~l~~~~~ 129 (191)
T 1huw_A 71 SNLELLRISLLLIQSWLEPVQFLRSVFANSLVYGASDSNVYDLLKDLEEGIQTLMGRLE 129 (191)
T ss_dssp CHHHHHHHHHHHHHTTTTGGGGGHHHHHHCCSTTTTTCCHHHHHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCChHHHHHHHHHHHHHHHHHHHHhc
Confidence 5678888888887766555555555542 3335 788899999999999998865
No 141
>2h8e_A Crossover junction endodeoxyribonuclease RUSA; homologous recombination, DNA repair, resolvase, hydrolase; 1.20A {Escherichia coli} PDB: 2h8c_A 1q8r_A
Probab=31.99 E-value=27 Score=23.00 Aligned_cols=17 Identities=18% Similarity=0.382 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHhhCC
Q 034185 62 INELEQSINDLRAEMGV 78 (102)
Q Consensus 62 IDdLEksI~dLm~qaG~ 78 (102)
||+|.|.+.|-|+.+|+
T Consensus 71 ~DN~~K~~~Dal~~~Gv 87 (120)
T 2h8e_A 71 LDNLQKAAFDALTKAGF 87 (120)
T ss_dssp THHHHHHHHHHHHHHTS
T ss_pred ccchHHHHHHHhcCCCc
Confidence 89999999999999984
No 142
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=31.98 E-value=86 Score=23.54 Aligned_cols=22 Identities=18% Similarity=0.228 Sum_probs=10.9
Q ss_pred HhHHHHhhhHHHHHHH---HHHHHH
Q 034185 53 TKIDEMGNRINELEQS---INDLRA 74 (102)
Q Consensus 53 ~RiDeMg~RIDdLEks---I~dLm~ 74 (102)
.|+.++-.+++.|+.. +..|..
T Consensus 113 ~~~~~L~~~~~~l~~~~~~l~~L~p 137 (357)
T 3rrk_A 113 KERAALEEEIQTIELFGKAAEKLAA 137 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHhh
Confidence 4444555555555555 554443
No 143
>2d5k_A DPS, DPS family protein; four helix bundle, metal binding protein; 1.85A {Staphylococcus aureus subsp}
Probab=31.76 E-value=60 Score=21.71 Aligned_cols=29 Identities=17% Similarity=0.387 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHhHHHHhhhHHHHH
Q 034185 38 QQMQSRFQTMSDSIVTKIDEMGNRINELE 66 (102)
Q Consensus 38 qQMQ~kFqtMS~~I~~RiDeMg~RIDdLE 66 (102)
..+..+|...+.+...-+|++..||-.|.
T Consensus 39 ~~lh~~~~~~~~ee~~had~iaERI~~lG 67 (156)
T 2d5k_A 39 FSLHVKFEELYNEASQYVDELAERILAVG 67 (156)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 44567788888888888899988887774
No 144
>3um3_B Charged multivesicular BODY protein 4B; alpha-helix of C-terminal tail of CHMP4B, ESCRT-III, CHMPS, protein-transport protein complex, BROX; 3.80A {Homo sapiens}
Probab=31.54 E-value=1.2e+02 Score=20.46 Aligned_cols=42 Identities=24% Similarity=0.500 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHH---HHHHHHHHHhHHHHhhhH--HHHHHHHHHHHHh
Q 034185 33 VQNLLQQMQSRF---QTMSDSIVTKIDEMGNRI--NELEQSINDLRAE 75 (102)
Q Consensus 33 Vq~LLqQMQ~kF---qtMS~~I~~RiDeMg~RI--DdLEksI~dLm~q 75 (102)
|+.|+.++++-- +.+++-|-+.+. .+..+ |+|++-+..|-.+
T Consensus 8 Ve~lmDei~E~~e~~~EI~e~Ls~~~~-~~~~~DEdELe~ELe~Le~e 54 (104)
T 3um3_B 8 VDELMQDIADQQELAEEISTAISKPVG-FGEEFDEDELMAELEELEQE 54 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccC-CCCCCCHHHHHHHHHHHHHH
Confidence 556666665543 233333322220 11223 5666666666554
No 145
>1nfn_A Apolipoprotein E3; lipid transport, heparin-binding, plasma protein, HDL, VLDL; 1.80A {Homo sapiens} SCOP: a.24.1.1 PDB: 1h7i_A 1ea8_A 1b68_A 1nfo_A 2kc3_A 1ya9_A
Probab=31.45 E-value=29 Score=25.13 Aligned_cols=27 Identities=11% Similarity=-0.090 Sum_probs=11.4
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 034185 22 PKQSTADMTVFVQNLLQQMQSRFQTMS 48 (102)
Q Consensus 22 pkqs~~dLT~~Vq~LLqQMQ~kFqtMS 48 (102)
|+..-..+..++-.-+.++++.+..+.
T Consensus 22 ~~s~~e~v~~~~~~y~~~l~~~a~~~~ 48 (191)
T 1nfn_A 22 SGQRWELALGRFWDYLRWVQTLSEQVQ 48 (191)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHCCHHHH
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 442333344455555555544443333
No 146
>1urq_A M-tomosyn isoform; transport protein, tomosyn-snare complex, exocytosis, four helical bundle, coiled coil; 2.0A {Rattus norvegicus} SCOP: h.1.15.1
Probab=30.93 E-value=95 Score=19.07 Aligned_cols=43 Identities=12% Similarity=0.266 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHhh
Q 034185 26 TADMTVFVQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDLRAEM 76 (102)
Q Consensus 26 ~~dLT~~Vq~LLqQMQ~kFqtMS~~I~~RiDeMg~RIDdLEksI~dLm~qa 76 (102)
.+.+-+.|..+-.-|... +.++.|=|.||+.|+..-.+|+.+|
T Consensus 6 i~~v~~qv~ev~~iM~~n--------i~kvlERGekL~~L~dkT~~L~~~A 48 (63)
T 1urq_A 6 IEGVKGAASGVVGELARA--------RLALDERGQKLSDLEERTAAMMSSA 48 (63)
T ss_dssp CHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555554444433 3556677888888888888887765
No 147
>3g67_A Methyl-accepting chemotaxis protein; four-helix bundle, signaling protein; 2.17A {Thermotoga maritima} PDB: 3g6b_A 3ur1_C
Probab=30.74 E-value=1.6e+02 Score=21.65 Aligned_cols=10 Identities=20% Similarity=0.501 Sum_probs=3.9
Q ss_pred HHHHHHHHHH
Q 034185 28 DMTVFVQNLL 37 (102)
Q Consensus 28 dLT~~Vq~LL 37 (102)
+|...++.+.
T Consensus 11 em~~~i~~i~ 20 (213)
T 3g67_A 11 NLNRLFQELV 20 (213)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3344444333
No 148
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=30.58 E-value=92 Score=19.84 Aligned_cols=22 Identities=14% Similarity=0.184 Sum_probs=10.6
Q ss_pred hHHHHhhhHHHHHHHHHHHHHh
Q 034185 54 KIDEMGNRINELEQSINDLRAE 75 (102)
Q Consensus 54 RiDeMg~RIDdLEksI~dLm~q 75 (102)
.||.+..++..|-..+.++-..
T Consensus 43 ~Id~L~~ql~~L~~rl~~~~~~ 64 (78)
T 3efg_A 43 TGARNAELIRHLLEDLGKVRST 64 (78)
T ss_dssp HHHHHHHHHHHHHHTC------
T ss_pred HHHHHHHHHHHHHHHHHHhhhc
Confidence 4666666666666666665543
No 149
>1sig_A Sigma70, RNA polymerase primary sigma factor; RNA polymerase sigma factor, transcription regulation; 2.60A {Escherichia coli} SCOP: a.177.1.1
Probab=30.34 E-value=1.4e+02 Score=22.39 Aligned_cols=32 Identities=22% Similarity=0.251 Sum_probs=25.2
Q ss_pred HHHHHHHhHHHHhhhHHHHHHHHHHHH-HhhCC
Q 034185 47 MSDSIVTKIDEMGNRINELEQSINDLR-AEMGV 78 (102)
Q Consensus 47 MS~~I~~RiDeMg~RIDdLEksI~dLm-~qaG~ 78 (102)
.-+.++.+|-++-.||..+|+.|..|. ..+|+
T Consensus 156 ~id~Lv~~lr~~~~~ir~~Er~i~~l~v~~~~m 188 (339)
T 1sig_A 156 QFDYLVNSMRVMMDRVRTQERLIMKLCVEQCKM 188 (339)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 345667788888999999999999998 44554
No 150
>3mtu_E Head morphogenesis protein, tropomyosin alpha-1 C; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Bacillus phage PHI29}
Probab=30.28 E-value=65 Score=21.26 Aligned_cols=14 Identities=21% Similarity=0.451 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHH
Q 034185 35 NLLQQMQSRFQTMS 48 (102)
Q Consensus 35 ~LLqQMQ~kFqtMS 48 (102)
.+|||+...+-++-
T Consensus 30 ~~~~~~~~~~~~~E 43 (77)
T 3mtu_E 30 EALQQLRVNYGSFV 43 (77)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 46788877776543
No 151
>2c5k_T Syntaxin TLG1, T-snare affecting A late golgi compartment protein 1; protein transport/complex, snare, VFT complex, protein transport, phosphorylation; 2.05A {Saccharomyces cerevisiae} PDB: 2c5j_A 2c5i_T
Probab=29.73 E-value=1.2e+02 Score=19.85 Aligned_cols=45 Identities=13% Similarity=0.221 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHH--------HHHHHHHHhHHHHhhhHHHHHHHHHH
Q 034185 27 ADMTVFVQNLLQQMQSRFQ--------TMSDSIVTKIDEMGNRINELEQSIND 71 (102)
Q Consensus 27 ~dLT~~Vq~LLqQMQ~kFq--------tMS~~I~~RiDeMg~RIDdLEksI~d 71 (102)
.++-.=|+.=|++++..|. .....+..-++++..-|+||+++|.-
T Consensus 9 ~~V~~D~~~ql~~l~~~~~~~~~~~~~~~~~El~~~l~el~e~l~DL~~SI~i 61 (95)
T 2c5k_T 9 QQVVKDTKEQLNRINNYITRHNTAGDDDQEEEIQDILKDVEETIVDLDRSIIV 61 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCC--CTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555556666666666653 23355555566666666666666654
No 152
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=29.64 E-value=2.3e+02 Score=23.68 Aligned_cols=25 Identities=24% Similarity=0.321 Sum_probs=20.4
Q ss_pred HHhHHHHhhhHHHHHHHHHHHHHhh
Q 034185 52 VTKIDEMGNRINELEQSINDLRAEM 76 (102)
Q Consensus 52 ~~RiDeMg~RIDdLEksI~dLm~qa 76 (102)
-..++.+..+|..||..|..++...
T Consensus 174 ~~~~~~l~~ki~~l~~~~~~~~~~~ 198 (464)
T 1m1j_B 174 RAVIDSLHKKIQKLENAIATQTDYC 198 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3567888999999999999888753
No 153
>2i0m_A Phosphate transport system protein PHOU; zinc-binding protein, structural genomics, PSI-2, PROT structure initiative; 2.40A {Streptococcus pneumoniae}
Probab=29.63 E-value=1.3e+02 Score=20.42 Aligned_cols=48 Identities=13% Similarity=0.152 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHH
Q 034185 26 TADMTVFVQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDLR 73 (102)
Q Consensus 26 ~~dLT~~Vq~LLqQMQ~kFqtMS~~I~~RiDeMg~RIDdLEksI~dLm 73 (102)
..+|...|...++..-+-|.+.......++-++-.+||+|++.+..-.
T Consensus 119 l~~m~~~v~~~l~~a~~a~~~~d~~~a~~v~~~d~~iD~l~~~~~~~~ 166 (216)
T 2i0m_A 119 LHQMGKLSLSMLADLLVAFPLHQASKAISIAQKDEQIDQYYYALSKEI 166 (216)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGTCHHHHHHHHHTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667777777777777877666677778788889999998886543
No 154
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=29.60 E-value=92 Score=21.69 Aligned_cols=51 Identities=18% Similarity=0.371 Sum_probs=33.1
Q ss_pred CHHHHHHHHHHHHHHHHHH--HHHHHHHHH----------------HhHHHHhhhHHHHHHHHHHHHHh
Q 034185 25 STADMTVFVQNLLQQMQSR--FQTMSDSIV----------------TKIDEMGNRINELEQSINDLRAE 75 (102)
Q Consensus 25 s~~dLT~~Vq~LLqQMQ~k--FqtMS~~I~----------------~RiDeMg~RIDdLEksI~dLm~q 75 (102)
....+..+|+.-+.+|..+ |..++..=+ .+.+.+-..|+++++.|.+|-.+
T Consensus 29 ~L~~vA~~vd~km~ei~~~~~~~~l~~~r~aVLaALNiadEl~k~~~~~~~L~~~l~~~~kE~~~lK~e 97 (138)
T 3hnw_A 29 YLQRVASYINNKITEFNKEESYRRMSAELRTDMMYLNIADDYFKAKKMADSLSLDIENKDKEIYDLKHE 97 (138)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5778899999999999944 765543311 24455566666666666666543
No 155
>1woz_A 177AA long conserved hypothetical protein (ST1454; structural genomics, unknown function; 1.94A {Sulfolobus tokodaii}
Probab=29.58 E-value=87 Score=22.68 Aligned_cols=42 Identities=26% Similarity=0.399 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-----hHHHHhhhHHHHHHHHHHHHHhh
Q 034185 33 VQNLLQQMQSRFQTMSDSIVT-----KIDEMGNRINELEQSINDLRAEM 76 (102)
Q Consensus 33 Vq~LLqQMQ~kFqtMS~~I~~-----RiDeMg~RIDdLEksI~dLm~qa 76 (102)
+...|.++|...-.+...+-+ +|.+ ..|+.||+-|..+..+.
T Consensus 50 ~~~~L~~IQ~~Lf~lga~la~~~~~~~i~~--~~v~~LE~~id~~~~~l 96 (177)
T 1woz_A 50 MKKDLERVQVELFEIGEDLSTQSSKKKIDE--KYVKWLEERTVEYRKES 96 (177)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTSSCCCCH--HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCccccCCCH--HHHHHHHHHHHHHHhhC
Confidence 445577777776666666554 2332 56889999999888876
No 156
>1gs9_A Apolipoprotein E, APOE4; lipid transport, heparin-binding, plasma, lipid binding protein; 1.7A {Homo sapiens} SCOP: a.24.1.1 PDB: 1or3_A 1or2_A 1le4_A 1bz4_A 1lpe_A 1le2_A
Probab=29.00 E-value=36 Score=24.28 Aligned_cols=17 Identities=24% Similarity=0.270 Sum_probs=7.5
Q ss_pred HHHHhHHHHhhhHHHHH
Q 034185 50 SIVTKIDEMGNRINELE 66 (102)
Q Consensus 50 ~I~~RiDeMg~RIDdLE 66 (102)
.|-.++|++++.+++|.
T Consensus 63 ~l~~~ld~l~~~~~~l~ 79 (165)
T 1gs9_A 63 LMDETMKELKAYKSELE 79 (165)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444443
No 157
>1nog_A Conserved hypothetical protein TA0546; structural genomics, PSI, protein structure initiative, MIDW center for structural genomics; 1.55A {Thermoplasma acidophilum} SCOP: a.25.2.2
Probab=28.62 E-value=93 Score=22.59 Aligned_cols=43 Identities=23% Similarity=0.489 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh-----HHHHhhhHHHHHHHHHHHHHhhC
Q 034185 33 VQNLLQQMQSRFQTMSDSIVTK-----IDEMGNRINELEQSINDLRAEMG 77 (102)
Q Consensus 33 Vq~LLqQMQ~kFqtMS~~I~~R-----iDeMg~RIDdLEksI~dLm~qaG 77 (102)
+...|.++|...-.+...+-+- |.+ ..|+.||+-|..+..+..
T Consensus 51 ~~~~L~~IQ~~Lf~lga~la~~~~~~~i~~--~~v~~LE~~id~~~~~l~ 98 (177)
T 1nog_A 51 IRNDLFRIQNDLFVLGEDVSTGGKGRTVTR--EMIDYLEARVKEMKAEIG 98 (177)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTSSSCCCH--HHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCcccCCCH--HHHHHHHHHHHHHHhhCC
Confidence 4455777777766666665542 332 668999999999988763
No 158
>1sum_B Phosphate transport system protein PHOU homolog 2; ABC transport, PST, structural genomics, berkeley STRU genomics center, BSGC; 2.00A {Thermotoga maritima} SCOP: a.7.12.1
Probab=28.58 E-value=1.1e+02 Score=21.48 Aligned_cols=48 Identities=10% Similarity=0.195 Sum_probs=36.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHH
Q 034185 25 STADMTVFVQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDL 72 (102)
Q Consensus 25 s~~dLT~~Vq~LLqQMQ~kFqtMS~~I~~RiDeMg~RIDdLEksI~dL 72 (102)
...+|...|...|+..-+-|.+.......++-++-.+||+|++.+..-
T Consensus 118 ~l~~m~~~v~~~l~~a~~a~~~~d~~~A~~v~~~d~~iD~l~~~l~~~ 165 (235)
T 1sum_B 118 DIPAMANQTSEMLKFALRMFADVNVEKSFEVCRMDSKVDDLYEKVREE 165 (235)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCCHHHHTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466777888888888888887766666677777778888888776653
No 159
>1avy_A Fibritin, gpwac M; bacteriophage T4, structural protein, chaperone, bacteriopha assembly, protein folding; 1.85A {Enterobacteria phage T4} SCOP: h.1.17.1
Probab=28.34 E-value=1.3e+02 Score=19.79 Aligned_cols=25 Identities=16% Similarity=0.373 Sum_probs=22.1
Q ss_pred HHHHhHHHHhhhHHHHHHHHHHHHH
Q 034185 50 SIVTKIDEMGNRINELEQSINDLRA 74 (102)
Q Consensus 50 ~I~~RiDeMg~RIDdLEksI~dLm~ 74 (102)
.|..|++....||-.||..|+.|-.
T Consensus 19 a~~~ev~t~~~~l~~~e~~vqaL~~ 43 (74)
T 1avy_A 19 SVRQEVNTAKGNISSLQGDVQALQE 43 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhheeeccccchhhhhhhhhHHHHh
Confidence 5667889999999999999999866
No 160
>2nrj_A HBL B protein; enterotoxin, hemolysis, transmembrane, structural genomics, PSI-2, protein structure initiative; 2.03A {Bacillus cereus} SCOP: h.4.4.2
Probab=28.33 E-value=1.6e+02 Score=23.04 Aligned_cols=32 Identities=6% Similarity=0.282 Sum_probs=20.1
Q ss_pred HHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHh
Q 034185 44 FQTMSDSIVTKIDEMGNRINELEQSINDLRAE 75 (102)
Q Consensus 44 FqtMS~~I~~RiDeMg~RIDdLEksI~dLm~q 75 (102)
|.+...++...+..-+.-|.+|++.|.++-.+
T Consensus 160 f~~~~~~l~~~L~~~~~~I~~Lq~eI~~l~~~ 191 (346)
T 2nrj_A 160 FGSNKELLQSILKNQGADVDADQKRLEEVLGS 191 (346)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHTGG
T ss_pred HHhHHHHHHHHHhcccccHHHHHHHHHHHHHH
Confidence 44556666666655566677777777766554
No 161
>3p8c_F ABL interactor 2; actin polymerization, protein binding; 2.29A {Homo sapiens}
Probab=28.20 E-value=1.7e+02 Score=21.29 Aligned_cols=54 Identities=17% Similarity=0.378 Sum_probs=33.6
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHH
Q 034185 19 SEDPKQSTADMTVFVQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDL 72 (102)
Q Consensus 19 s~dpkqs~~dLT~~Vq~LLqQMQ~kFqtMS~~I~~RiDeMg~RIDdLEksI~dL 72 (102)
+.|..+.-++--+|+-.-|-..-..-.+++..++.-+|.=...|+.+|.+|+-|
T Consensus 41 s~dK~~aleeTK~Ya~qsLaSVAyqIn~lA~~ll~lLd~Q~~~l~~mes~v~~l 94 (159)
T 3p8c_F 41 SADKQRALEETKAYTTQSLASVAYLINTLANNVLQMLDIQASQLRRMESSINHI 94 (159)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455554556666665555655655666677777666666666666666666643
No 162
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=27.97 E-value=1.9e+02 Score=22.00 Aligned_cols=49 Identities=4% Similarity=0.090 Sum_probs=27.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHH
Q 034185 25 STADMTVFVQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDLR 73 (102)
Q Consensus 25 s~~dLT~~Vq~LLqQMQ~kFqtMS~~I~~RiDeMg~RIDdLEksI~dLm 73 (102)
+.++|...++.+=+||+-+.+.+-..+---+++|-+.|+.+++.|.+=+
T Consensus 199 ~~e~l~~~l~~~~~~~~qq~e~f~~~~~p~~e~~~~~l~~~~e~l~~~l 247 (273)
T 3s84_A 199 NTEGLQKSLAELGGHLDQQVEEFRRRVEPYGENFNKALVQQMEQLRQKL 247 (273)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHh
Confidence 3455555555555555555555555555555666666666665555444
No 163
>3ajm_A Programmed cell death protein 10; adaptor protein, dimerization, four-helix bundle, apoptosis; HET: 4IP; 2.30A {Homo sapiens} PDB: 3l8i_A 3rqe_A 3rqf_A 3rqg_A 3l8j_A
Probab=27.95 E-value=76 Score=24.42 Aligned_cols=32 Identities=28% Similarity=0.494 Sum_probs=22.4
Q ss_pred HHHHHHHHHHhH-HHHhhh------HHHHHHHHHHHHHh
Q 034185 44 FQTMSDSIVTKI-DEMGNR------INELEQSINDLRAE 75 (102)
Q Consensus 44 FqtMS~~I~~Ri-DeMg~R------IDdLEksI~dLm~q 75 (102)
..+.-..|++|| |||+.| |.++=.+|..|..-
T Consensus 99 rA~~LK~iLSrIPdEI~dR~~FL~tIKeIAsaIKklLDA 137 (213)
T 3ajm_A 99 KARALKQILSKIPDEINDRVRFLQTIKDIASAIKELLDT 137 (213)
T ss_dssp HHHHHHHHHHTHHHHTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCchhhcchHHHHHHHHHHHHHHHHHHHH
Confidence 345567888898 888888 66666666666554
No 164
>2ovc_A Potassium voltage-gated channel subfamily KQT MEM; potassium channel, ION channel assemb coiled-coil, tetramer, transport protein; 2.07A {Homo sapiens}
Probab=27.91 E-value=42 Score=18.87 Aligned_cols=19 Identities=5% Similarity=0.331 Sum_probs=7.8
Q ss_pred HhHHHHhhhHHHHHHHHHH
Q 034185 53 TKIDEMGNRINELEQSIND 71 (102)
Q Consensus 53 ~RiDeMg~RIDdLEksI~d 71 (102)
+|+--+-+.+.++|+.++-
T Consensus 10 ~Rl~kVE~qv~~md~KLd~ 28 (33)
T 2ovc_A 10 GRVVKVEKQVQSIEHKLDL 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3443333444444444433
No 165
>2y7c_A Type-1 restriction enzyme ecoki specificity prote; transferase; 18.00A {Escherichia coli} PDB: 2y7h_A*
Probab=27.83 E-value=73 Score=23.60 Aligned_cols=19 Identities=11% Similarity=0.188 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHhHHHHh
Q 034185 41 QSRFQTMSDSIVTKIDEMG 59 (102)
Q Consensus 41 Q~kFqtMS~~I~~RiDeMg 59 (102)
|.++-..-+.++.++|.+-
T Consensus 378 Q~~Iv~~l~~~~~~id~l~ 396 (464)
T 2y7c_A 378 QAEIVRRVEQLFAYADTIE 396 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4454443344444444443
No 166
>1ydx_A Type I restriction enzyme specificity protein Mg4; type-I HSDS, DNA binding protein; 2.30A {Mycoplasma genitalium} SCOP: d.287.1.2 d.287.1.2
Probab=27.77 E-value=1.5e+02 Score=21.98 Aligned_cols=38 Identities=16% Similarity=0.215 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHhh
Q 034185 39 QMQSRFQTMSDSIVTKIDEMGNRINELEQSINDLRAEM 76 (102)
Q Consensus 39 QMQ~kFqtMS~~I~~RiDeMg~RIDdLEksI~dLm~qa 76 (102)
.-|.+|...-+.|..+|+..-.+|+.|++--..||.++
T Consensus 355 ~eQ~~I~~~l~~id~~i~~~~~~i~~L~~lk~~LL~~l 392 (406)
T 1ydx_A 355 QLQRKAGKIVFLLDQKLDQYKKELSSLTVIRDTLLKKL 392 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34667766667777888888888888888888888886
No 167
>2vxx_A Starvation induced DNA binding protein; stress response protein, DPS, oxidation, iron binding, ferroxidase centre; HET: PG4; 2.40A {Synechococcus elongatus}
Probab=27.31 E-value=76 Score=22.01 Aligned_cols=30 Identities=20% Similarity=0.419 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHhHHHHhhhHHHHHH
Q 034185 38 QQMQSRFQTMSDSIVTKIDEMGNRINELEQ 67 (102)
Q Consensus 38 qQMQ~kFqtMS~~I~~RiDeMg~RIDdLEk 67 (102)
..+..+|...+.+...-+|++..||-.|.-
T Consensus 60 ~~lh~~~~~~~~ee~~had~laErI~~LGg 89 (192)
T 2vxx_A 60 YPLHQFFQDCYEQVQDHVHALGERLNGLGG 89 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 344566777777777778888888777653
No 168
>1p68_A De novo designed protein S-824; four helix bundle, de novo protein; NMR {Escherichia coli} SCOP: k.8.1.1 PDB: 2jua_A
Probab=27.29 E-value=1.5e+02 Score=20.16 Aligned_cols=52 Identities=23% Similarity=0.482 Sum_probs=35.9
Q ss_pred CCCHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHhHHHHhhh-------HHHHHHHHHHHHH
Q 034185 23 KQSTADMTVFVQNLLQQMQS---------RFQTMSDSIVTKIDEMGNR-------INELEQSINDLRA 74 (102)
Q Consensus 23 kqs~~dLT~~Vq~LLqQMQ~---------kFqtMS~~I~~RiDeMg~R-------IDdLEksI~dLm~ 74 (102)
|.+..|+...+|++++.+.+ |.|.|-.++-.-+||..+. +-.+|++|.++.-
T Consensus 27 kdnlhdvdnhlqnviedihdfmqgggsggklqemmkefqqvldelnnhlqggkhtvhhieqnikeifh 94 (102)
T 1p68_A 27 KDNLHDVDNHLQNVIEDIHDFMQGGGSGGKLQEMMKEFQQVLDELNNHLQGGKHTVHHIEQNIKEIFH 94 (102)
T ss_dssp STTTHHHHHHHHHHHHHHHTTTTTSSTTTHHHHTHHHHHHHHHHHHTTCCSCHHHHHHHHHHHTTHHH
T ss_pred ccchhhHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHhHHHHHH
Confidence 34678888888888777654 5666666666667777543 5678888876643
No 169
>1yzm_A FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB GTPase, vesicular trafficking, protein transport; 1.50A {Homo sapiens} SCOP: a.2.19.1
Probab=27.15 E-value=37 Score=20.77 Aligned_cols=19 Identities=26% Similarity=0.597 Sum_probs=12.8
Q ss_pred HhHHHHhhhHHHHHHHHHHHHHh
Q 034185 53 TKIDEMGNRINELEQSINDLRAE 75 (102)
Q Consensus 53 ~RiDeMg~RIDdLEksI~dLm~q 75 (102)
+|+||+. -||.|+.+|-.+
T Consensus 25 ~r~DEV~----~Le~NLrEL~~e 43 (51)
T 1yzm_A 25 GRMDEVR----TLQENLRQLQDE 43 (51)
T ss_dssp TCHHHHH----HHHHHHHHHHHH
T ss_pred CCcHHHH----HHHHHHHHHHHH
Confidence 5666644 388888888654
No 170
>3v1a_A Computational design, MID1-APO1; helix-turn-helix, metal binding, homodimer, de novo protein, binding protein; 0.98A {Artificial gene} PDB: 3v1b_A* 3v1c_A* 3v1d_A* 3v1f_A* 3v1e_A
Probab=27.11 E-value=37 Score=20.54 Aligned_cols=19 Identities=26% Similarity=0.559 Sum_probs=13.4
Q ss_pred HhHHHHhhhHHHHHHHHHHHHHh
Q 034185 53 TKIDEMGNRINELEQSINDLRAE 75 (102)
Q Consensus 53 ~RiDeMg~RIDdLEksI~dLm~q 75 (102)
+|.||+.+ |++|+.+|-.+
T Consensus 24 rRfdEV~~----L~~NL~EL~~E 42 (48)
T 3v1a_A 24 GRMDEVRT----LQENLHQLMHE 42 (48)
T ss_dssp TCHHHHHH----HHHHHHHHHHH
T ss_pred cChHHHHH----HHHHHHHHHHH
Confidence 56666544 88888888665
No 171
>3pp5_A BRK1, protein brick1; triple coiled-coil, precursor of the SCAR-WAVE complex, ABI, structural protein; 1.50A {Dictyostelium discoideum}
Probab=26.85 E-value=1.3e+02 Score=19.45 Aligned_cols=40 Identities=10% Similarity=0.341 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHH
Q 034185 28 DMTVFVQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSIND 71 (102)
Q Consensus 28 dLT~~Vq~LLqQMQ~kFqtMS~~I~~RiDeMg~RIDdLEksI~d 71 (102)
-++.|+...=....+|+..+. .||....++|+=||..+..
T Consensus 31 ~~v~FLN~F~~sce~KLa~ln----~kL~~lE~~L~iLEAklsS 70 (73)
T 3pp5_A 31 KIVEFLNKFELSTRNKLSDLN----EKLTILDRQVDYLEATFKT 70 (73)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhc
Confidence 345555555555566665544 6788899999999988763
No 172
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=26.82 E-value=1.8e+02 Score=21.02 Aligned_cols=13 Identities=23% Similarity=0.537 Sum_probs=5.6
Q ss_pred hHHHHHHHHHHHH
Q 034185 61 RINELEQSINDLR 73 (102)
Q Consensus 61 RIDdLEksI~dLm 73 (102)
+|+.|-+.|.+|.
T Consensus 114 kI~aL~~Ei~~Lr 126 (175)
T 3lay_A 114 KINAVAKEMESLG 126 (175)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444443
No 173
>3t98_B Nucleoporin NUP58/NUP45; NUP62 complex, nuclear import, coiled-coil, HE hairpin, FG-repeat, NPC, nuclear tranport, TRA channel, karyopherin; 2.50A {Rattus norvegicus} PDB: 2osz_A
Probab=26.54 E-value=87 Score=20.74 Aligned_cols=31 Identities=16% Similarity=0.378 Sum_probs=21.7
Q ss_pred HHHHHHHHHHhHHHHhhhHHHHHHHHHHHHH
Q 034185 44 FQTMSDSIVTKIDEMGNRINELEQSINDLRA 74 (102)
Q Consensus 44 FqtMS~~I~~RiDeMg~RIDdLEksI~dLm~ 74 (102)
|+.+..+.-.||..--..|++||+.+.-+-.
T Consensus 10 F~~lv~~fe~rL~~Yr~~IeelE~~L~s~s~ 40 (93)
T 3t98_B 10 FRVLVQQFEVQLQQYRQQIEELENHLATQAN 40 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 4555555556777778888888888876543
No 174
>3cue_B Transport protein particle 31 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae}
Probab=26.50 E-value=58 Score=25.81 Aligned_cols=37 Identities=22% Similarity=0.441 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhHH
Q 034185 26 TADMTVFVQNLLQQMQSRFQTMSDSIVTKIDEMGNRIN 63 (102)
Q Consensus 26 ~~dLT~~Vq~LLqQMQ~kFqtMS~~I~~RiDeMg~RID 63 (102)
..-++-....+.++++.+..+.+ ++..||+.||-+|=
T Consensus 59 ~s~fafLf~EmV~~~~~~~~~~~-e~e~rLe~mGy~IG 95 (283)
T 3cue_B 59 LSAMAFLFQEMISQLHRTCKTAG-DFETKLSDYGHNIG 95 (283)
T ss_dssp HHHHHHHHHHHHHHHHHHCSSHH-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCchH-HHHHHHHHhhhhhh
Confidence 34455667788899999888765 47889999887663
No 175
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=26.22 E-value=88 Score=17.57 Aligned_cols=10 Identities=30% Similarity=0.830 Sum_probs=4.9
Q ss_pred hhHHHHHHHH
Q 034185 60 NRINELEQSI 69 (102)
Q Consensus 60 ~RIDdLEksI 69 (102)
.|+|.||..+
T Consensus 20 ~r~drle~tv 29 (32)
T 2akf_A 20 ERLDRLEETV 29 (32)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4455555444
No 176
>1yf2_A Type I restriction-modification enzyme, S subunit; structura genomics, PSI, protein structure initiative; 2.40A {Methanocaldococcus jannaschii} SCOP: d.287.1.2 d.287.1.2
Probab=26.16 E-value=1.5e+02 Score=21.48 Aligned_cols=37 Identities=22% Similarity=0.276 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHhh
Q 034185 40 MQSRFQTMSDSIVTKIDEMGNRINELEQSINDLRAEM 76 (102)
Q Consensus 40 MQ~kFqtMS~~I~~RiDeMg~RIDdLEksI~dLm~qa 76 (102)
-|.|+-..-++|-.+|+.--+.|+.|++--..||.++
T Consensus 170 EQ~~I~~~l~~ld~~i~~~~~~i~~l~~~k~~l~~~~ 206 (425)
T 1yf2_A 170 EQKQIAKILTKIDEGIEIIEKSINKLERIKKGLMHKL 206 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677766666777777778888888888777777664
No 177
>3zrx_A AF1503 protein, osmolarity sensor protein ENVZ; signaling protein, osmoregulation, OMPR, OMPC; 1.25A {Archaeoglobus fulgidus} PDB: 3zrv_A 3zrw_A 3zrw_B 2lfs_A 2lfr_A 1joy_A 2l7i_A 2y20_A 2l7h_A 2y21_A 2y0t_A 2y0q_A
Probab=26.12 E-value=97 Score=17.62 Aligned_cols=17 Identities=6% Similarity=0.130 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 034185 27 ADMTVFVQNLLQQMQSR 43 (102)
Q Consensus 27 ~dLT~~Vq~LLqQMQ~k 43 (102)
.+|...+..+.++++..
T Consensus 40 ~~l~~~~n~m~~~l~~~ 56 (115)
T 3zrx_A 40 GILAKSIERLRRSLKQL 56 (115)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444433
No 178
>2yko_A LINE-1 ORF1P; RNA-binding protein, genome evolution, nucleic acid chaperon coiled-coil; HET: MSE; 2.10A {Homo sapiens} PDB: 2ykp_A 2ykq_A 2ldy_A
Probab=25.85 E-value=30 Score=26.84 Aligned_cols=25 Identities=24% Similarity=0.574 Sum_probs=19.1
Q ss_pred HHHHhHHHHhhhHHHHHHHHHHHHH
Q 034185 50 SIVTKIDEMGNRINELEQSINDLRA 74 (102)
Q Consensus 50 ~I~~RiDeMg~RIDdLEksI~dLm~ 74 (102)
.+-+|+|++..||++||..+.++.+
T Consensus 3 ~lnsRvd~~EErIs~le~rleei~q 27 (233)
T 2yko_A 3 SLRSRCDQLEERVSAAEDEINEIKR 27 (233)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHH
Confidence 4568999999999999999988764
No 179
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=25.67 E-value=83 Score=23.13 Aligned_cols=25 Identities=24% Similarity=0.335 Sum_probs=16.3
Q ss_pred HHhHHHHhhhHHHHHHHHHHHHHhh
Q 034185 52 VTKIDEMGNRINELEQSINDLRAEM 76 (102)
Q Consensus 52 ~~RiDeMg~RIDdLEksI~dLm~qa 76 (102)
...|+....||..||+.|.++|.+.
T Consensus 96 ~kEie~~~~~i~~lE~eile~~e~i 120 (256)
T 3na7_A 96 NIEEDIAKERSNQANREIENLQNEI 120 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666677777777777777653
No 180
>3p8c_E Probable protein brick1; actin polymerization, protein binding; 2.29A {Homo sapiens}
Probab=25.64 E-value=1.4e+02 Score=19.39 Aligned_cols=37 Identities=22% Similarity=0.411 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHH
Q 034185 30 TVFVQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSIN 70 (102)
Q Consensus 30 T~~Vq~LLqQMQ~kFqtMS~~I~~RiDeMg~RIDdLEksI~ 70 (102)
+.|+.+.=....+||.++. .||....++|+=||+.++
T Consensus 33 v~FLN~F~~sce~KLa~ln----~KL~~LEr~L~iLEAkls 69 (75)
T 3p8c_E 33 ADFLNSFDMSCRSRLATLN----EKLTALERRIEYIEARVT 69 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHh
Confidence 3344443344455555444 677888899999998764
No 181
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=25.23 E-value=62 Score=24.80 Aligned_cols=23 Identities=13% Similarity=0.325 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhH
Q 034185 33 VQNLLQQMQSRFQTMSDSIVTKI 55 (102)
Q Consensus 33 Vq~LLqQMQ~kFqtMS~~I~~Ri 55 (102)
+..||..+-++|..+-+.|-.++
T Consensus 182 l~~lld~ivd~y~~~l~~l~~~i 204 (363)
T 2iub_A 182 LYSLIDALVDDYFVLLEKIDDEI 204 (363)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444333333333
No 182
>2c0j_B R32611_2; palmitate; HET: PLM; 2.20A {Homo sapiens} PDB: 2j3t_B*
Probab=25.18 E-value=50 Score=23.36 Aligned_cols=33 Identities=9% Similarity=0.217 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHhHHHHhhhH
Q 034185 30 TVFVQNLLQQMQSRFQTMS----DSIVTKIDEMGNRI 62 (102)
Q Consensus 30 T~~Vq~LLqQMQ~kFqtMS----~~I~~RiDeMg~RI 62 (102)
+-.--.+.++++.+++..+ +.+..||+.||-+|
T Consensus 9 ~~l~~elV~~~~~~~~~~~~~~~~~v~~~Le~mGy~I 45 (160)
T 2c0j_B 9 EFLHTEMVAELWAHDPDPGPGGQKMSLSVLEGMGFRV 45 (160)
T ss_dssp HHHHHHHHHHTC-----------CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCcccccHHHHHHHHHHHhHHH
Confidence 3334466777777777542 34578888888765
No 183
>2e9x_C GINS complex subunit 3; eukaryotic DNA replication; HET: DNA; 2.30A {Homo sapiens} SCOP: a.278.1.3 d.344.1.4 PDB: 2eho_D* 2q9q_D*
Probab=24.95 E-value=59 Score=24.14 Aligned_cols=43 Identities=26% Similarity=0.387 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhH----HHHhhhHHHHHHHHHHH
Q 034185 30 TVFVQNLLQQMQSRFQTMSDSIVTKI----DEMGNRINELEQSINDL 72 (102)
Q Consensus 30 T~~Vq~LLqQMQ~kFqtMS~~I~~Ri----DeMg~RIDdLEksI~dL 72 (102)
..+.+.|++-+..||-.+.+...... .+.-.|+|.+|+.|-..
T Consensus 135 ~~L~~~L~~tf~~R~~~I~d~a~~~~~~~~~~~~~~Ld~~Er~Lf~~ 181 (219)
T 2e9x_C 135 ADISQSLLQTFIGRFRRIMDSSQNAYNEDTSALVARLDEMERGLFQT 181 (219)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSSCCCCHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccccHHHHHhcCCHHHHHHHHH
Confidence 35567788889999998888876653 34688999999987654
No 184
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A
Probab=24.78 E-value=1.1e+02 Score=21.00 Aligned_cols=20 Identities=15% Similarity=0.361 Sum_probs=14.1
Q ss_pred HHHhHHHHhhhHHHHHHHHH
Q 034185 51 IVTKIDEMGNRINELEQSIN 70 (102)
Q Consensus 51 I~~RiDeMg~RIDdLEksI~ 70 (102)
+-.+++++..|+++||+.++
T Consensus 143 l~~~i~~L~~~l~~le~~~~ 162 (166)
T 3pjs_K 143 YTRTTRALHERFDRLERMLD 162 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 34556777888888887664
No 185
>4i0x_B ESAT-6-like protein MAB_3113; structural genomics, PSI-2, protein structure initiative, in center for structure and function innovation; HET: BME GOL; 1.96A {Mycobacterium abscessus}
Probab=24.70 E-value=1.3e+02 Score=18.72 Aligned_cols=18 Identities=17% Similarity=0.320 Sum_probs=7.5
Q ss_pred HHHhhhHHHHHHHHHHHH
Q 034185 56 DEMGNRINELEQSINDLR 73 (102)
Q Consensus 56 DeMg~RIDdLEksI~dLm 73 (102)
.++...|++|+..|..|.
T Consensus 28 ~~i~~~l~~L~~~v~~L~ 45 (103)
T 4i0x_B 28 EFVTENLDQLESRAQKLV 45 (103)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 333334444444444443
No 186
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=24.67 E-value=1.2e+02 Score=18.28 Aligned_cols=21 Identities=24% Similarity=0.420 Sum_probs=13.3
Q ss_pred HhHHHHhhhHHHHHHHHHHHH
Q 034185 53 TKIDEMGNRINELEQSINDLR 73 (102)
Q Consensus 53 ~RiDeMg~RIDdLEksI~dLm 73 (102)
.+-+++-.+|..|+..+.-|-
T Consensus 37 ~~N~~L~~~i~~L~~E~~~Lk 57 (63)
T 1ci6_A 37 KKNEALKERADSLAKEIQYLK 57 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 455666677777776665553
No 187
>1hs7_A Syntaxin VAM3; UP-and-DOWN three-helix bundle insertion preceding proline in AN alpha-helix, endocytosis/exocytosis complex; NMR {Saccharomyces cerevisiae} SCOP: a.47.2.1
Probab=24.59 E-value=1.5e+02 Score=19.83 Aligned_cols=26 Identities=12% Similarity=0.304 Sum_probs=18.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034185 25 STADMTVFVQNLLQQMQSRFQTMSDSI 51 (102)
Q Consensus 25 s~~dLT~~Vq~LLqQMQ~kFqtMS~~I 51 (102)
+..|+...++++=.++| .|+.|-.+|
T Consensus 4 ~~~d~~~li~t~s~niq-~l~k~~~ql 29 (97)
T 1hs7_A 4 KTKELSNLIETFAEQSR-VLEKECTKI 29 (97)
T ss_dssp HHHHHHHHHHHHHHHHH-HHHHHHHHT
T ss_pred ccccHHHHHHHHHHHHH-HHHHHHHHh
Confidence 45688888888888887 677665443
No 188
>2nps_B Syntaxin 13, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus}
Probab=24.46 E-value=1.2e+02 Score=18.26 Aligned_cols=36 Identities=14% Similarity=0.340 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHH
Q 034185 34 QNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDLR 73 (102)
Q Consensus 34 q~LLqQMQ~kFqtMS~~I~~RiDeMg~RIDdLEksI~dLm 73 (102)
+.-+.++..=|..|+.= +.+=|.-||.+|.||...-
T Consensus 12 e~~i~eL~~iF~dla~l----V~eQge~id~Ie~nv~~a~ 47 (71)
T 2nps_B 12 EADILDVNQIFKDLAMM----IHDQGDLIDSIEANVESSE 47 (71)
T ss_dssp HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH----HHHhhhHHHHHHHHHHHHH
Confidence 34455666778877633 3566788888888887654
No 189
>1ecm_A Endo-oxabicyclic transition state analogue; P-protein, chorismate mutase domain, chorismate mutase; HET: TSA; 2.20A {Escherichia coli} SCOP: a.130.1.1
Probab=24.44 E-value=55 Score=21.16 Aligned_cols=21 Identities=24% Similarity=0.396 Sum_probs=14.7
Q ss_pred HHHHhhhHHHHHHHHHHHHHh
Q 034185 55 IDEMGNRINELEQSINDLRAE 75 (102)
Q Consensus 55 iDeMg~RIDdLEksI~dLm~q 75 (102)
|++.=.+||++-+.|-+|+++
T Consensus 7 L~~lR~~ID~iD~~L~~LL~~ 27 (109)
T 1ecm_A 7 LLALREKISALDEKLLALLAE 27 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 666667777777777777654
No 190
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=24.35 E-value=1.3e+02 Score=19.19 Aligned_cols=35 Identities=17% Similarity=0.322 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHH
Q 034185 33 VQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDLRA 74 (102)
Q Consensus 33 Vq~LLqQMQ~kFqtMS~~I~~RiDeMg~RIDdLEksI~dLm~ 74 (102)
.++-|..+..+|.. .+.++...|..||..+..+..
T Consensus 15 Le~~l~e~E~~~~~-------~l~~~q~~i~~lE~el~~~r~ 49 (86)
T 1x8y_A 15 KEAKLRDLEDSLAR-------ERDTSRRLLAEKEREMAEMRA 49 (86)
T ss_dssp HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666643 345555555666666555543
No 191
>3p8c_D Wiskott-aldrich syndrome protein family member 1; actin polymerization, protein binding; 2.29A {Homo sapiens}
Probab=24.15 E-value=2e+02 Score=22.62 Aligned_cols=43 Identities=19% Similarity=0.457 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhH----HHHhhhHHHHHHHHHHHHHhh
Q 034185 33 VQNLLQQMQSRFQTMSDSIVTKI----DEMGNRINELEQSINDLRAEM 76 (102)
Q Consensus 33 Vq~LLqQMQ~kFqtMS~~I~~Ri----DeMg~RIDdLEksI~dLm~qa 76 (102)
+-++|.||.+= ...+..||+-| ..++.|+..|...|..|....
T Consensus 34 L~gilRQL~dL-s~~A~dIF~eL~~e~~~~~~R~~~L~~RI~~L~~~v 80 (279)
T 3p8c_D 34 LANIIRQLSSL-SKYAEDIFGELFNEAHSFSFRVNSLQERVDRLSVSV 80 (279)
T ss_dssp HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34678888663 34455555544 688999999999999998765
No 192
>3fkm_X Signaling protein; bromodomain, malaria, structural genomics, structural genomi consortium, SGC; 2.50A {Plasmodium falciparum 3D7}
Probab=24.12 E-value=29 Score=24.44 Aligned_cols=10 Identities=40% Similarity=0.464 Sum_probs=7.5
Q ss_pred hhchhhhHHh
Q 034185 4 LICSNWLLFW 13 (102)
Q Consensus 4 ~~~~~~~~~~ 13 (102)
|||.|...|-
T Consensus 90 Lif~Na~~yN 99 (166)
T 3fkm_X 90 LIFDNCSLYN 99 (166)
T ss_dssp HHHHHHHHSS
T ss_pred HHHHHHHHHC
Confidence 6788888774
No 193
>1buu_A Protein (mannose-binding protein A); lectin, HOST defense, metalloprotein, sugar binding protein; 1.90A {Rattus norvegicus} SCOP: d.169.1.1 h.1.1.1
Probab=23.99 E-value=86 Score=20.86 Aligned_cols=9 Identities=33% Similarity=0.608 Sum_probs=3.3
Q ss_pred hHHHHHHHH
Q 034185 61 RINELEQSI 69 (102)
Q Consensus 61 RIDdLEksI 69 (102)
+|..|+..+
T Consensus 31 ~~~~L~~~l 39 (168)
T 1buu_A 31 EINTLKSKL 39 (168)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 194
>3r2k_A Bacterioferritin, BFR; bacterial ferritin, iron binding, iron storage, iron homeost iron release, iron mobilization; 1.55A {Pseudomonas aeruginosa} SCOP: a.25.1.0 PDB: 3r2h_A 3r2l_A 3r2m_A 3r2o_A 3r2r_A 3r2s_A
Probab=23.77 E-value=75 Score=20.59 Aligned_cols=29 Identities=17% Similarity=0.220 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHhhhHHHH
Q 034185 37 LQQMQSRFQTMSDSIVTKIDEMGNRINEL 65 (102)
Q Consensus 37 LqQMQ~kFqtMS~~I~~RiDeMg~RIDdL 65 (102)
+.++...|...+.+...-.|.+..||-.|
T Consensus 37 ~~~l~~~f~~~a~ee~~had~l~eri~~l 65 (154)
T 3r2k_A 37 FSKLYERLNHEMEEETQHADALLRRILLL 65 (154)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 45667777777777777777777777554
No 195
>2a01_A Apolipoprotein A-I; four-helix bundle, lipid transport; HET: AC9; 2.40A {Homo sapiens} PDB: 3k2s_A* 1av1_A 3j00_0*
Probab=23.59 E-value=1.9e+02 Score=21.26 Aligned_cols=30 Identities=10% Similarity=0.257 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 034185 26 TADMTVFVQNLLQQMQSRFQTMSDSIVTKI 55 (102)
Q Consensus 26 ~~dLT~~Vq~LLqQMQ~kFqtMS~~I~~Ri 55 (102)
.++|-.-|..-++.++.++.-..+++-.+|
T Consensus 145 ~eelr~kl~~~veelk~~l~P~~ee~r~kl 174 (243)
T 2a01_A 145 GEEMRDRARAHVDALRTHLAPYSDELRQRL 174 (243)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 455555566667777777755555544444
No 196
>3mq1_A Mite allergen DER P 5; DUST mite; HET: MRD MPD; 2.80A {Dermatophagoides pteronyssinus}
Probab=23.48 E-value=80 Score=21.90 Aligned_cols=30 Identities=13% Similarity=0.365 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHH
Q 034185 35 NLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQS 68 (102)
Q Consensus 35 ~LLqQMQ~kFqtMS~~I~~RiDeMg~RIDdLEks 68 (102)
.|.++++.+|..+-..++ ..+..|++||++
T Consensus 4 ~Lv~~~~~~~~k~E~~Ll----~Ls~Qi~~LEkt 33 (103)
T 3mq1_A 4 SLMERIHEQIKKGELALF----YLQEQINHFEEK 33 (103)
T ss_dssp CCHHHHHHHHHHHHHHHH----HHHHHHHHHHHS
T ss_pred hHHHHHHHHHHHHHHHHH----HHHHHHHHHHcc
Confidence 356777888876543333 456777888875
No 197
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=23.46 E-value=1.9e+02 Score=24.02 Aligned_cols=35 Identities=14% Similarity=0.475 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHhHHHHhhhH-------HHHHHHHHHHHHh
Q 034185 41 QSRFQTMSDSIVTKIDEMGNRI-------NELEQSINDLRAE 75 (102)
Q Consensus 41 Q~kFqtMS~~I~~RiDeMg~RI-------DdLEksI~dLm~q 75 (102)
+++|..+|+++-.||-.+-.+| .-|+.+|.++..+
T Consensus 108 dn~~~e~s~eLe~~i~~lk~~V~~q~~~ir~Lq~~l~~q~~k 149 (390)
T 1deq_A 108 DNTFKQINEDLRSRIEILRRKVIEQVQRINLLQKNVRDQLVD 149 (390)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 4456666666666665555544 4466666665543
No 198
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=23.37 E-value=44 Score=23.19 Aligned_cols=12 Identities=25% Similarity=0.617 Sum_probs=7.2
Q ss_pred CHHHHHHHHHHH
Q 034185 25 STADMTVFVQNL 36 (102)
Q Consensus 25 s~~dLT~~Vq~L 36 (102)
...|+...++.+
T Consensus 115 ~~~~v~~~i~~l 126 (203)
T 3qks_A 115 SSKAISAFMEKL 126 (203)
T ss_dssp SHHHHHHHHHHH
T ss_pred ChHHHHHHHHHH
Confidence 355666666655
No 199
>3zcc_A HAMP, osmolarity sensor protein ENVZ; signaling protein, signal transduction, membrane protein, signalling, chimera; 1.25A {Archaeoglobus fulgidus} PDB: 3zrw_A 3zrv_A 3zrx_A 3zrw_B 2lfr_A 2lfs_A 1joy_A 2l7h_A 2l7i_A 2y20_A 2y21_A 2y0q_A 2y0t_A
Probab=23.24 E-value=1.1e+02 Score=17.43 Aligned_cols=15 Identities=7% Similarity=0.184 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHH
Q 034185 28 DMTVFVQNLLQQMQS 42 (102)
Q Consensus 28 dLT~~Vq~LLqQMQ~ 42 (102)
+|...+..+.++++.
T Consensus 41 ~l~~~~n~m~~~l~~ 55 (114)
T 3zcc_A 41 ILAKSIERLRRSLKQ 55 (114)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444443
No 200
>1szq_A 2-methylcitrate dehydratase; propionate catabolism, 2-methylcitric acid cycle structural genomics target, NYSGXRC, PSI; 2.70A {Escherichia coli} SCOP: e.44.1.1
Probab=23.07 E-value=94 Score=25.15 Aligned_cols=37 Identities=19% Similarity=0.250 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHH-----HhHHHHhhhHHHHHH-HHHHHHH
Q 034185 38 QQMQSRFQTMSDSIV-----TKIDEMGNRINELEQ-SINDLRA 74 (102)
Q Consensus 38 qQMQ~kFqtMS~~I~-----~RiDeMg~RIDdLEk-sI~dLm~ 74 (102)
.++..||..+...++ .||=+.-.+++.||. .+.+|+.
T Consensus 437 ~~l~~KF~~~~~~~~~~~~~~~i~~~~~~le~~~~~~v~~l~~ 479 (483)
T 1szq_A 437 PKLVDKFKINLARQFPTRQQQRILEVSLDRARLEQMPVNEYLD 479 (483)
T ss_dssp HHHHHHHHHHHHHHSCHHHHHHHHHHHHCHHHHHHSBHHHHHT
T ss_pred HHHHHHHHHHhhccCCHHHHHHHHHHHhChhccccCCHHHHHH
Confidence 367788877654333 444455556666776 6888875
No 201
>1ygt_A Cytoplasmic dynein light chain; domain swapping, protein transport; 1.70A {Drosophila melanogaster} PDB: 2pg1_E 3fm7_A
Probab=23.07 E-value=1.1e+02 Score=19.95 Aligned_cols=19 Identities=5% Similarity=0.165 Sum_probs=13.7
Q ss_pred CCCCHHHHHHHHHHHHHHH
Q 034185 22 PKQSTADMTVFVQNLLQQM 40 (102)
Q Consensus 22 pkqs~~dLT~~Vq~LLqQM 40 (102)
.+-.++++...++..|++-
T Consensus 8 ~~F~~~~v~~ii~~~l~~~ 26 (111)
T 1ygt_A 8 SQFIVDDVSKTIKEAIETT 26 (111)
T ss_dssp CCCCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHh
Confidence 3346788888888888753
No 202
>2jmh_A BLO T 5, mite allergen BLO T 5; DUST mites, group 5; NMR {Blomia tropicalis} PDB: 2jrk_A
Probab=22.91 E-value=1.3e+02 Score=21.24 Aligned_cols=29 Identities=14% Similarity=0.381 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHH
Q 034185 36 LLQQMQSRFQTMSDSIVTKIDEMGNRINELEQS 68 (102)
Q Consensus 36 LLqQMQ~kFqtMS~~I~~RiDeMg~RIDdLEks 68 (102)
|+++++.+|..+-..++ ..+..|++||++
T Consensus 20 Lv~~~~~~~~k~E~~Ll----~Ls~Qi~~LE~t 48 (119)
T 2jmh_A 20 LIEQANHAIEKGEHQLL----YLQHQLDELNEN 48 (119)
T ss_dssp HHHHHHHHHHHHHHHHH----HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHHhc
Confidence 56677778866543333 456777788776
No 203
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=22.88 E-value=1.7e+02 Score=19.35 Aligned_cols=28 Identities=21% Similarity=0.227 Sum_probs=19.8
Q ss_pred HHhHHHHhhhHHHHHHHHHHHHHhhCCC
Q 034185 52 VTKIDEMGNRINELEQSINDLRAEMGVE 79 (102)
Q Consensus 52 ~~RiDeMg~RIDdLEksI~dLm~qaG~e 79 (102)
-.||.|.-.|+..||..=+=|.+-+-.|
T Consensus 21 Ke~I~EL~e~~~qLE~EN~~Lk~~aspE 48 (78)
T 1dip_A 21 KEQIRELVEKNSQLERENTLLKTLASPE 48 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCHH
Confidence 4677778888888888766666655554
No 204
>2clb_A DPS-like protein; DI-iron carboxylate, hypothetical protein, bacterioferritin, hydrogen peroxide, metal binding protein, archaea; 2.4A {Sulfolobus solfataricus}
Probab=22.83 E-value=60 Score=22.81 Aligned_cols=28 Identities=18% Similarity=0.100 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHhHHHHhhhHHHHH
Q 034185 39 QMQSRFQTMSDSIVTKIDEMGNRINELE 66 (102)
Q Consensus 39 QMQ~kFqtMS~~I~~RiDeMg~RIDdLE 66 (102)
.+...|...+.+...-+|++..||-.|.
T Consensus 58 ~lh~~f~~~~~ee~~haD~iaERI~~LG 85 (188)
T 2clb_A 58 GLKEIAEDARLEDRLHFELMTQRIYELG 85 (188)
T ss_dssp GGHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 4567788888889999999999988775
No 205
>3r2v_A PB2 C-terminal subunit; structural genomics, seattle structural genomics center for infectious disease, ssgcid, polymerase BASI H3N2, H1N1; 1.30A {Influenza a virus} PDB: 2vy6_A 3cw4_A 3l56_A 3kc6_A 3khw_A 2gmo_A 2jdq_D
Probab=22.76 E-value=71 Score=24.46 Aligned_cols=36 Identities=31% Similarity=0.445 Sum_probs=26.6
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Q 034185 17 HDSEDPKQSTADMTVFVQNLLQQMQSRFQTM-SDSIV 52 (102)
Q Consensus 17 ~~s~dpkqs~~dLT~~Vq~LLqQMQ~kFqtM-S~~I~ 52 (102)
..|--||-....-+.||.+|+|||.+-..++ ..||+
T Consensus 43 FqSlvPka~r~qYSGFvRtlfqQMRDvlgtf~T~QiI 79 (216)
T 3r2v_A 43 FQSLVPKAIRSQYSGFVRTLFQQMRDVLGTFDTTQII 79 (216)
T ss_dssp HHTTSCTTTHHHHHHHHHHHHHHHHHSTTCCCHHHHH
T ss_pred hhhhchHHHhhhhhHHHHHHHHHHHHHHccchhhhhh
Confidence 4566788778899999999999999854433 14554
No 206
>2qqy_A Sigma B operon; dodecameric alpha-helical, ferritin fold, structural genomic protein structure initiative; 2.00A {Bacillus anthracis str}
Probab=22.38 E-value=1.2e+02 Score=18.99 Aligned_cols=28 Identities=14% Similarity=0.163 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHhHHHHhhhHHHH
Q 034185 38 QQMQSRFQTMSDSIVTKIDEMGNRINEL 65 (102)
Q Consensus 38 qQMQ~kFqtMS~~I~~RiDeMg~RIDdL 65 (102)
..+...|...+.+-..-.|.+..||..|
T Consensus 42 ~~l~~~f~~~a~ee~~Ha~~l~e~i~~l 69 (149)
T 2qqy_A 42 QVLKPFFESEISDEQGHALYLAEKIKTL 69 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3455566666666666666666666543
No 207
>2gtl_O Extracellular hemoglobin linker L3 subunit; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1
Probab=22.31 E-value=1.3e+02 Score=22.75 Aligned_cols=38 Identities=21% Similarity=0.390 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhHHHHH
Q 034185 26 TADMTVFVQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELE 66 (102)
Q Consensus 26 ~~dLT~~Vq~LLqQMQ~kFqtMS~~I~~RiDeMg~RIDdLE 66 (102)
..+|+.-|..|=+.+..|+. +.++.++.+++.|.|+++
T Consensus 14 ~~~l~~~~~~l~~~~~~r~~---~~~~~~~~~c~d~sDE~~ 51 (215)
T 2gtl_O 14 TNKITTSISHVESLLDDRLD---PKRIRKAGSLRHRVEELE 51 (215)
T ss_dssp HHHHHHHHHHHHHHHHHHHC---HHHHHHHHHHHHHHHHHS
T ss_pred HHHHhhhHHHHhhhhhcccc---hhhhcccccCCcchhhcc
Confidence 45666666666666666654 556777788888888764
No 208
>1mr1_C SKI oncogene, SKI, C-SKI; SMAD, cancer, TGF-B signaling, protein interaction, signaling protein; 2.85A {Homo sapiens} SCOP: d.217.1.2
Probab=22.29 E-value=90 Score=21.34 Aligned_cols=34 Identities=15% Similarity=0.338 Sum_probs=23.7
Q ss_pred hhhhHHhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 034185 7 SNWLLFWQDGHDSEDPKQSTADMTVFVQNLLQQMQSRFQ 45 (102)
Q Consensus 7 ~~~~~~~~~~~~s~dpkqs~~dLT~~Vq~LLqQMQ~kFq 45 (102)
+||-.|-.-..+.++ .+..+.++.+|++|..||+
T Consensus 65 anWr~yl~l~~~~~~-----~~~~~~l~~~l~~~k~~f~ 98 (99)
T 1mr1_C 65 ANWRAYILLSQDYTG-----KEEQARLGRCLDDVKEKFD 98 (99)
T ss_dssp GGHHHHCEECTTCCC-----TTHHHHHHHHHHHHHHHCC
T ss_pred hccceeEEcccCCCC-----cchhHHHHHHHHHHHHHhC
Confidence 677777665555443 2345778899999999985
No 209
>1wy1_A Hypothetical protein PH0671; structural genomics, riken structural genomics/proteomics in RSGI, transferase; 1.80A {Pyrococcus horikoshii}
Probab=22.20 E-value=1.2e+02 Score=21.87 Aligned_cols=43 Identities=26% Similarity=0.384 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh-----HHHHhhhHHHHHHHHHHHHHhhC
Q 034185 33 VQNLLQQMQSRFQTMSDSIVTK-----IDEMGNRINELEQSINDLRAEMG 77 (102)
Q Consensus 33 Vq~LLqQMQ~kFqtMS~~I~~R-----iDeMg~RIDdLEksI~dLm~qaG 77 (102)
++..|..+|...-.+...+-+- |.+ ..|+.||+-|..+..+..
T Consensus 52 ~~~~L~~IQ~~Lf~lga~la~~~~~~~i~~--~~v~~LE~~id~~~~~lp 99 (172)
T 1wy1_A 52 MKGILEEIQNDIYKIMGEIGSKGKIEGISE--ERIKWLEGLISRYEEMVN 99 (172)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTSSCCCCH--HHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCcccCCCH--HHHHHHHHHHHHHhhhCC
Confidence 5566777887776666666652 322 668889999998887654
No 210
>1rty_A YVQK protein; all alpha-helical trimeric protein, structural genomics, PSI, protein structure initiative; 2.40A {Bacillus subtilis} SCOP: a.25.2.2
Probab=22.14 E-value=1.2e+02 Score=22.20 Aligned_cols=42 Identities=19% Similarity=0.257 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh-------HHHHhhhHHHHHHHHHHHHHhh
Q 034185 33 VQNLLQQMQSRFQTMSDSIVTK-------IDEMGNRINELEQSINDLRAEM 76 (102)
Q Consensus 33 Vq~LLqQMQ~kFqtMS~~I~~R-------iDeMg~RIDdLEksI~dLm~qa 76 (102)
+...|.++|...-.+...+-+- |++ ..|+.||+-|..+..+.
T Consensus 56 ~~~~L~~IQ~~Lf~lga~la~p~~~~~~~i~~--~~v~~LE~~Id~~~~~l 104 (193)
T 1rty_A 56 LTAELLTIQHELFDCGGDLAIVTERKDYKLTE--ESVSFLETRIDAYTAEA 104 (193)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCC---CCCCCH--HHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCccccCCCCH--HHHHHHHHHHHHHHhhC
Confidence 4555777777766666555542 222 66899999999988875
No 211
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=21.95 E-value=1.7e+02 Score=19.07 Aligned_cols=48 Identities=15% Similarity=0.254 Sum_probs=33.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHhh
Q 034185 25 STADMTVFVQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDLRAEM 76 (102)
Q Consensus 25 s~~dLT~~Vq~LLqQMQ~kFqtMS~~I~~RiDeMg~RIDdLEksI~dLm~qa 76 (102)
+..|-..|++.=++.+..+...+. ..+.....+|..++..|..++.++
T Consensus 85 ~~~eA~~~l~~r~~~l~~~~~~l~----~~l~~l~~~i~~~~~~l~~~~~~~ 132 (133)
T 1fxk_C 85 NFEDAMESIKSQKNELESTLQKMG----ENLRAITDIMMKLSPQAEELLAAV 132 (133)
T ss_dssp EHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhhcc
Confidence 456666777766666666665544 455677778888888888888765
No 212
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=21.83 E-value=3.2e+02 Score=23.41 Aligned_cols=37 Identities=27% Similarity=0.452 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHhHHHHh-------hhHHHHHHHHHHHHHh
Q 034185 39 QMQSRFQTMSDSIVTKIDEMG-------NRINELEQSINDLRAE 75 (102)
Q Consensus 39 QMQ~kFqtMS~~I~~RiDeMg-------~RIDdLEksI~dLm~q 75 (102)
+-.++|...|+++-.||..+- ++|.-|-.+|.++..+
T Consensus 104 dndn~~~e~S~eLe~ri~yIK~kVd~qi~~IrvLq~~l~~q~sk 147 (491)
T 1m1j_A 104 QLDENYGHVSTELRRRIVTLKQRVATQVNRIKALQNSIQEQVVE 147 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334556666666666554444 4444566666665543
No 213
>2xhe_A UNC18; exocytosis, exocytosis complex, snare, neuro fusion, SM PROT choanoflagellates; 2.80A {Monosiga brevicollis}
Probab=21.83 E-value=1.9e+02 Score=24.08 Aligned_cols=48 Identities=15% Similarity=0.272 Sum_probs=29.2
Q ss_pred CCCHHHHHHHHHHH--HHHHHHHHH---HHHHHHHHhHHHHhhhHHHHHHHHH
Q 034185 23 KQSTADMTVFVQNL--LQQMQSRFQ---TMSDSIVTKIDEMGNRINELEQSIN 70 (102)
Q Consensus 23 kqs~~dLT~~Vq~L--LqQMQ~kFq---tMS~~I~~RiDeMg~RIDdLEksI~ 70 (102)
..+..||..||..| +++++.++. ++...|+..+.+==.++=++|++|.
T Consensus 321 ~~s~~~lk~~V~~LP~~~~~~~~l~~H~~ia~~l~~~i~~~l~~~~~~EQ~l~ 373 (650)
T 2xhe_A 321 EGGAGALKQMLKDLPQHREQMQKYSLHLDMSNAINMAFSSTIDSCTKAEQNIV 373 (650)
T ss_dssp TTTHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34899999999985 444444443 6677777766541112335676664
No 214
>2y7c_A Type-1 restriction enzyme ecoki specificity prote; transferase; 18.00A {Escherichia coli} PDB: 2y7h_A*
Probab=21.63 E-value=1.1e+02 Score=22.56 Aligned_cols=9 Identities=11% Similarity=0.438 Sum_probs=5.5
Q ss_pred hhhhHHhhc
Q 034185 7 SNWLLFWQD 15 (102)
Q Consensus 7 ~~~~~~~~~ 15 (102)
..||.||+.
T Consensus 119 ~~fl~y~l~ 127 (464)
T 2y7c_A 119 SGFIAHFTK 127 (464)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHc
Confidence 347766664
No 215
>1z0j_B FYVE-finger-containing RAB5 effector protein RABE, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Homo sapiens} SCOP: a.2.19.1
Probab=21.60 E-value=48 Score=20.85 Aligned_cols=19 Identities=21% Similarity=0.522 Sum_probs=13.6
Q ss_pred HhHHHHhhhHHHHHHHHHHHHHh
Q 034185 53 TKIDEMGNRINELEQSINDLRAE 75 (102)
Q Consensus 53 ~RiDeMg~RIDdLEksI~dLm~q 75 (102)
+|+||+. -||.|+.+|-.+
T Consensus 32 ~R~DEV~----~Le~NLrEL~~e 50 (59)
T 1z0j_B 32 GRLDEVE----VLTENLRELKHT 50 (59)
T ss_dssp SCHHHHH----HHHHHHHHHHHH
T ss_pred CChHHHH----HHHHHHHHHHHH
Confidence 5677754 488898888665
No 216
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=21.52 E-value=1.8e+02 Score=19.05 Aligned_cols=33 Identities=15% Similarity=0.398 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHH
Q 034185 37 LQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDLR 73 (102)
Q Consensus 37 LqQMQ~kFqtMS~~I~~RiDeMg~RIDdLEksI~dLm 73 (102)
+.++.+=|+.|+.- +.+=|.-||.+|.|+...-
T Consensus 30 I~eL~~iF~dla~l----V~eQge~Id~Ie~nv~~a~ 62 (109)
T 3hd7_B 30 IRELHDMFMDMAML----VESQGEMIDRIEYNVEHAV 62 (109)
T ss_dssp HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH----HHHhhHHHHHHHHHHHHHH
Confidence 44555566666533 3466777888888876543
No 217
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=21.16 E-value=85 Score=24.25 Aligned_cols=17 Identities=18% Similarity=0.374 Sum_probs=6.5
Q ss_pred HHHhhhHHHHHHHHHHH
Q 034185 56 DEMGNRINELEQSINDL 72 (102)
Q Consensus 56 DeMg~RIDdLEksI~dL 72 (102)
+.+..++..|++.|.+|
T Consensus 188 e~L~~~~~~L~eEi~~L 204 (315)
T 2ve7_A 188 ESLEAKNRALNEQIARL 204 (315)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 218
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=21.11 E-value=2.1e+02 Score=19.64 Aligned_cols=49 Identities=14% Similarity=0.345 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--H----h----HHHHhhh---HHHHHHHHHHHHHhh
Q 034185 28 DMTVFVQNLLQQMQSRFQTMSDSIV--T----K----IDEMGNR---INELEQSINDLRAEM 76 (102)
Q Consensus 28 dLT~~Vq~LLqQMQ~kFqtMS~~I~--~----R----iDeMg~R---IDdLEksI~dLm~qa 76 (102)
.++.=+++.|+.+..-.+.+-..|. . | -+|.++| |.+++..|.++-.+.
T Consensus 67 ~~~~EL~~~l~sie~dLeDLe~sI~ivE~np~kF~l~~~Ei~~Rr~fV~~~r~~I~~mk~~l 128 (130)
T 4dnd_A 67 WTTNELRNGLRSIEWDLEDLEETIGIVEANPGKFKLPAGDLQERKVFVERMREAVQEMKDHM 128 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344455555555555555555444 2 2 2456655 566777777766553
No 219
>1z0k_B FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB gtpases, effector complex, vesicular trafficking, protein transport; HET: GTP MES; 1.92A {Homo sapiens} SCOP: a.2.19.1
Probab=21.05 E-value=54 Score=21.13 Aligned_cols=19 Identities=26% Similarity=0.597 Sum_probs=13.3
Q ss_pred HhHHHHhhhHHHHHHHHHHHHHh
Q 034185 53 TKIDEMGNRINELEQSINDLRAE 75 (102)
Q Consensus 53 ~RiDeMg~RIDdLEksI~dLm~q 75 (102)
+|+||+. -||.|+.+|-.+
T Consensus 43 ~r~DEV~----tLe~NLrEL~~e 61 (69)
T 1z0k_B 43 GRMDEVR----TLQENLRQLQDE 61 (69)
T ss_dssp TCHHHHH----HHHHHHHHHHHH
T ss_pred cCcHHHH----HHHHHHHHHHHH
Confidence 5666654 488888888665
No 220
>3he4_A Synzip6; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=21.02 E-value=1.3e+02 Score=18.59 Aligned_cols=26 Identities=27% Similarity=0.604 Sum_probs=15.0
Q ss_pred HHHHHhHH----HHhhhHHHHHHHHHHHHH
Q 034185 49 DSIVTKID----EMGNRINELEQSINDLRA 74 (102)
Q Consensus 49 ~~I~~RiD----eMg~RIDdLEksI~dLm~ 74 (102)
+.|+.|++ .+-..|-.|||.|+.|-.
T Consensus 23 enivarlendnanlekdianlekdianler 52 (56)
T 3he4_A 23 ENIVARLENDNANLEKDIANLEKDIANLER 52 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcccchHHHHHHHHHHHHHHHHH
Confidence 34555553 234556677777776643
No 221
>3g46_A Globin-1; oxygen transport, allostery, oxygen affinity, cytoplasm, heme, iron, metal-binding, oxygen storage/transport, oxygen binding; HET: HEM; 0.91A {Scapharca inaequivalvis} SCOP: a.1.1.2 PDB: 1nxf_A* 3g4q_A* 3g4r_A* 3g4u_A* 3g4v_A* 3g4w_A* 3g4y_A* 3g52_A* 3g53_A* 3uhg_A* 3uhs_A* 3uhk_A* 3uhi_A* 3uhn_A* 3ugy_A* 2auo_A* 2aup_A* 3uhr_A* 3uh5_A* 3uh3_A* ...
Probab=20.93 E-value=82 Score=20.79 Aligned_cols=31 Identities=3% Similarity=0.139 Sum_probs=20.6
Q ss_pred HHHHHHHHhHHHHhhhHHHHHHHHHHHHHhhC
Q 034185 46 TMSDSIVTKIDEMGNRINELEQSINDLRAEMG 77 (102)
Q Consensus 46 tMS~~I~~RiDeMg~RIDdLEksI~dLm~qaG 77 (102)
.=...|++-|+..-..||+++. +..++.+.|
T Consensus 68 ~h~~~v~~al~~~v~~ldd~~~-l~~~l~~l~ 98 (146)
T 3g46_A 68 GHSITLMYALQNFIDQLDNPDD-LVCVVEKFA 98 (146)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHH-HHHHHHHHH
Confidence 3445577777777777888775 666665554
No 222
>2la2_A Cecropin, papiliocin; antimicrobial peptide, cecropin-like peptide, AN inflammatory activity, antimicrobial protein; NMR {Papilio xuthus}
Probab=20.83 E-value=66 Score=18.82 Aligned_cols=15 Identities=27% Similarity=0.674 Sum_probs=11.1
Q ss_pred HHHHhHHHHhhhHHH
Q 034185 50 SIVTKIDEMGNRINE 64 (102)
Q Consensus 50 ~I~~RiDeMg~RIDd 64 (102)
.++.+|+-+|.||.|
T Consensus 3 ~~FK~iE~vGq~iRd 17 (38)
T 2la2_A 3 KIFKKIEKVGRNVRD 17 (38)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHH
Confidence 357788888888754
No 223
>2ld3_A Myosin VI; molecular motor, lever arm extension, motor prote; NMR {Mus musculus}
Probab=26.12 E-value=21 Score=23.54 Aligned_cols=20 Identities=40% Similarity=0.536 Sum_probs=12.3
Q ss_pred HHHhhhHHHHHHHHHHHHHh
Q 034185 56 DEMGNRINELEQSINDLRAE 75 (102)
Q Consensus 56 DeMg~RIDdLEksI~dLm~q 75 (102)
|+|+..|.+|++.|..++..
T Consensus 31 ~~~~kqV~~l~~~Ie~~I~k 50 (88)
T 2ld3_A 31 PEVNRQIKNLEISIDALMAK 50 (88)
Confidence 45666666666666666554
No 224
>3ci3_A Cobalamin adenosyltransferase PDUO-like protein; adenosyltransferase variant, adenosylcobalamin binding, ATP binding; HET: 3PO 5AD B12; 1.11A {Lactobacillus reuteri} PDB: 3ci1_A* 3ci4_A* 2r6t_A* 2r6x_A* 3gah_A* 3gai_A* 3gaj_A*
Probab=20.66 E-value=97 Score=22.81 Aligned_cols=42 Identities=17% Similarity=0.187 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH----------hHHHHhhhHHHHHHHHHHHHHhh
Q 034185 33 VQNLLQQMQSRFQTMSDSIVT----------KIDEMGNRINELEQSINDLRAEM 76 (102)
Q Consensus 33 Vq~LLqQMQ~kFqtMS~~I~~----------RiDeMg~RIDdLEksI~dLm~qa 76 (102)
+...|.++|...-.+...+-+ +|. ...|+.||+-|..+..+.
T Consensus 61 ~~~~L~~IQ~~Lf~lga~la~p~~~~~~~~~~i~--~~~v~~LE~~id~~~~~l 112 (194)
T 3ci3_A 61 LSNELEEIQQLLFDCGHDLATPADDERHSFKFKQ--EQPTVWLEEKIDNYTQVV 112 (194)
T ss_dssp GHHHHHHHHHHHHHHHHHHTSCTTCTTCCCCCCC--HHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHcCCcccccccccCCC--HHHHHHHHHHHHHHHhhC
Confidence 444566677666556555554 232 266889999999988875
No 225
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=20.45 E-value=3e+02 Score=21.18 Aligned_cols=15 Identities=33% Similarity=0.576 Sum_probs=7.8
Q ss_pred hhHHHHHHHHHHHHH
Q 034185 60 NRINELEQSINDLRA 74 (102)
Q Consensus 60 ~RIDdLEksI~dLm~ 74 (102)
.||.+||..|..|-.
T Consensus 443 ~~~~~~~~~~~~~~~ 457 (471)
T 3mq9_A 443 KKVEELEGEITTLNH 457 (471)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 355555555555443
No 226
>2zhy_A ATP:COB(I)alamin adenosyltransferase, putative; helix bundle; 1.80A {Burkholderia thailandensis} PDB: 2zhz_A*
Probab=20.37 E-value=1.4e+02 Score=21.66 Aligned_cols=42 Identities=12% Similarity=0.298 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH----hHHHHhhhHHHHHHHHHHHHHhh
Q 034185 33 VQNLLQQMQSRFQTMSDSIVT----KIDEMGNRINELEQSINDLRAEM 76 (102)
Q Consensus 33 Vq~LLqQMQ~kFqtMS~~I~~----RiDeMg~RIDdLEksI~dLm~qa 76 (102)
+...|.++|...-.+...+-. +|.+ .-|+.||+-|..+..+.
T Consensus 58 ~~~~L~~IQ~~Lf~lga~la~~~~~~i~~--~~v~~LE~~id~~~~~l 103 (183)
T 2zhy_A 58 VRAALSAIQHDLFDLGGELCIPGHAAITD--AHLARLDGWLAHYNGQL 103 (183)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTCCCCCH--HHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCCCH--HHHHHHHHHHHHHHhhC
Confidence 455677777776666555552 3443 56899999999888764
No 227
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=20.36 E-value=2.5e+02 Score=20.27 Aligned_cols=38 Identities=21% Similarity=0.343 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHH------HhHHHHhhhHHHHHHHHHHHHH
Q 034185 37 LQQMQSRFQTMSDSIV------TKIDEMGNRINELEQSINDLRA 74 (102)
Q Consensus 37 LqQMQ~kFqtMS~~I~------~RiDeMg~RIDdLEksI~dLm~ 74 (102)
-++|..+-+.|-.-+. .+|+....+|.+|...+.....
T Consensus 91 r~ql~akr~EL~aL~~a~~~DeakI~aL~~Ei~~Lr~qL~~~R~ 134 (175)
T 3lay_A 91 RQQLISKRYEYNALLTASSPDTAKINAVAKEMESLGQKLDEQRV 134 (175)
T ss_dssp HHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444333 5677777777777777666553
No 228
>2d8d_A Aroag, phospho-2-dehydro-3-deoxyheptonate aldolase/chori mutase; chorismate, dimer, structural genomics, NPPSFA; 1.15A {Thermus thermophilus} SCOP: a.130.1.1 PDB: 2d8e_A
Probab=20.33 E-value=97 Score=19.26 Aligned_cols=21 Identities=19% Similarity=0.401 Sum_probs=14.5
Q ss_pred HHHHhhhHHHHHHHHHHHHHh
Q 034185 55 IDEMGNRINELEQSINDLRAE 75 (102)
Q Consensus 55 iDeMg~RIDdLEksI~dLm~q 75 (102)
|++.-.+||++-+.|-+|+++
T Consensus 5 L~~lR~~ID~iD~~l~~Ll~~ 25 (90)
T 2d8d_A 5 IQALRKEVDRVNREILRLLSE 25 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 566666777777777777654
No 229
>3uv4_A Second bromodomain of human transcription initiat TFIID subunit 1 (TAF1); structural genomics consortium, SGC; 1.89A {Homo sapiens} PDB: 3hmh_A
Probab=20.32 E-value=60 Score=22.67 Aligned_cols=23 Identities=17% Similarity=0.381 Sum_probs=15.2
Q ss_pred HhHHHHhhhHHHHHHHHHHHHHh
Q 034185 53 TKIDEMGNRINELEQSINDLRAE 75 (102)
Q Consensus 53 ~RiDeMg~RIDdLEksI~dLm~q 75 (102)
.++.++-.++..||++|..--..
T Consensus 125 ~~l~e~~~~l~~le~~i~~~~e~ 147 (158)
T 3uv4_A 125 QTLTEYDEHLTQLEKDICTAKEA 147 (158)
T ss_dssp HHHHHTHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556667788899988765443
No 230
>2ieq_A S glycoprotein, spike glycoprotein, peplomer protein, E2; membrane fusion, virus entry, six-HEL bundle, viral protein; 1.75A {Human coronavirus}
Probab=20.18 E-value=2.3e+02 Score=19.75 Aligned_cols=44 Identities=18% Similarity=0.360 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHhhCC
Q 034185 31 VFVQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDLRAEMGV 78 (102)
Q Consensus 31 ~~Vq~LLqQMQ~kFqtMS~~I~~RiDeMg~RIDdLEksI~dLm~qaG~ 78 (102)
+-|.+-++|+|+-|.+++..+ .++-+. +.+-=+-|++|+.|.+.
T Consensus 11 ~~~n~Ai~~~~~gf~tv~~Al-~kiQdV---VN~q~~aLs~ll~QLn~ 54 (109)
T 2ieq_A 11 SSVNDAITQTAEAIHTVTIAL-NKIQDV---VNQQGSALNHLTSQLRH 54 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-HHHHHH---HHHHHHHHHHHHCCC--
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHH---HHHHHHHHHHHHHHhcc
Confidence 456788999999999988654 455544 55577889999998764
No 231
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=20.01 E-value=2.1e+02 Score=19.28 Aligned_cols=24 Identities=13% Similarity=0.191 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 034185 27 ADMTVFVQNLLQQMQSRFQTMSDS 50 (102)
Q Consensus 27 ~dLT~~Vq~LLqQMQ~kFqtMS~~ 50 (102)
.-|.+.|+...+.|.+....|..+
T Consensus 39 arLc~~Vd~t~~eL~~EI~~L~~e 62 (96)
T 1t3j_A 39 ARLCQQVDMTQKHLEEEIARLSKE 62 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555554444444
Done!