BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 034187
(102 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9T070|COX6A_ARATH Cytochrome c oxidase subunit 6a, mitochondrial OS=Arabidopsis
thaliana GN=COX6A PE=2 SV=1
Length = 102
Score = 119 bits (298), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 58/87 (66%), Positives = 68/87 (78%), Gaps = 1/87 (1%)
Query: 2 AMVRSGLLQTALRRVSSASSAPPKRGFASSAHHDDAYETAKWEKITYLGIATCTVLAFYN 61
A+VRS L + A+ R + +S PKR F+SSA HDDAYE AKWEKITYLGIA+CT LA Y
Sbjct: 4 AIVRSALSR-AVTRAAPKTSVAPKRNFSSSAGHDDAYEAAKWEKITYLGIASCTALAVYV 62
Query: 62 LSKGHPHYEEPPRYEYLHIRNKEFPWG 88
LSKGH H E+PP Y ++HIRNKEFPWG
Sbjct: 63 LSKGHHHGEDPPAYPHMHIRNKEFPWG 89
>sp|O13085|COX6A_ONCMY Cytochrome c oxidase subunit 6A, mitochondrial OS=Oncorhynchus
mykiss PE=3 SV=1
Length = 102
Score = 36.2 bits (82), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 44/81 (54%), Gaps = 11/81 (13%)
Query: 16 VSSASSAPPKRGFASSAHHDDAYETAK-WEKITYL----GIATCTVLAFYNLSKGHPHYE 70
++S +S +R ++++H +A+ W+ ++++ G+A C A+ + + H
Sbjct: 1 MASPASMAARRVLSAASHAGHEGGSARTWKILSFVLALPGVAVCIANAYMKMQQ---HSH 57
Query: 71 EPPR---YEYLHIRNKEFPWG 88
EPP Y +L IR K++PWG
Sbjct: 58 EPPEFVAYSHLRIRTKKWPWG 78
>sp|P10818|CX6A1_RAT Cytochrome c oxidase subunit 6A1, mitochondrial OS=Rattus
norvegicus GN=Cox6a1 PE=1 SV=2
Length = 111
Score = 36.2 bits (82), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 39/89 (43%), Gaps = 17/89 (19%)
Query: 6 SGLLQTALRRVSSASSAPPKRGFASSAHHDDAYETAKWEKITYL----GIATCTVLAFYN 61
SGLL AL RV R +S AH ++ W+ +TY G+ + F
Sbjct: 12 SGLLGRALPRVG--------RPMSSGAHGEEG-SARIWKALTYFVALPGVGVSMLNVF-- 60
Query: 62 LSKGHPHYEEPP--RYEYLHIRNKEFPWG 88
L H +E P Y +L IR K FPWG
Sbjct: 61 LKSRHEEHERPEFVAYPHLRIRTKPFPWG 89
>sp|P43024|CX6A1_MOUSE Cytochrome c oxidase subunit 6A1, mitochondrial OS=Mus musculus
GN=Cox6a1 PE=1 SV=2
Length = 111
Score = 35.8 bits (81), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 29/65 (44%), Gaps = 8/65 (12%)
Query: 30 SSAHHDDAYETAKWEKITYL----GIATCTVLAFYNLSKGHPHYEEPP--RYEYLHIRNK 83
SS H + W+ +TY G+ + F L H +E PP Y +L IR K
Sbjct: 27 SSGAHGEEGSARMWKALTYFVALPGVGVSMLNVF--LKSRHEEHERPPFVAYPHLRIRTK 84
Query: 84 EFPWG 88
FPWG
Sbjct: 85 PFPWG 89
>sp|Q20779|COX6A_CAEEL Probable cytochrome c oxidase subunit 6A, mitochondrial
OS=Caenorhabditis elegans GN=tag-174 PE=3 SV=1
Length = 128
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 29/57 (50%), Gaps = 7/57 (12%)
Query: 36 DAYETAKWEKITYLGIATCTVLAFYNLSKGHPHY---EEPPRYEY--LHIRNKEFPW 87
+A ET W+KI ++ C L Y K H + E P EY L++RNK FPW
Sbjct: 46 NASET--WKKIFFIASIPCLALTMYAAFKDHKKHMSHERPEHVEYAFLNVRNKPFPW 100
>sp|Q756G2|TOM1_ASHGO Probable E3 ubiquitin-protein ligase TOM1 OS=Ashbya gossypii
(strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL
Y-1056) GN=TOM1 PE=3 SV=2
Length = 3258
Score = 34.3 bits (77), Expect = 0.25, Method: Composition-based stats.
Identities = 25/83 (30%), Positives = 41/83 (49%), Gaps = 6/83 (7%)
Query: 2 AMVRSGLLQTALRRVSSASSAPPKRGFASSAHH-----DDAYETAKWEKITYLGIATCTV 56
+++ +GL+ + L VS+ +S KR AS+AH DA TA++ I TV
Sbjct: 420 SLISAGLISSLLEIVSTQNSKY-KRTLASAAHLLEDVISDADATAEFINNNGFNILIQTV 478
Query: 57 LAFYNLSKGHPHYEEPPRYEYLH 79
N + +P EPP+Y ++
Sbjct: 479 TYEVNFAVQNPSSAEPPKYSVVY 501
>sp|P13182|CX6A1_BOVIN Cytochrome c oxidase subunit 6A1, mitochondrial OS=Bos taurus
GN=COX6A1 PE=1 SV=3
Length = 109
Score = 33.1 bits (74), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 26/63 (41%), Gaps = 4/63 (6%)
Query: 30 SSAHHDDAYETAKWEKITYL----GIATCTVLAFYNLSKGHPHYEEPPRYEYLHIRNKEF 85
SS H + W+ +TY G+ + F G E Y +L IR+K F
Sbjct: 25 SSGAHGEEGSARMWKALTYFVALPGVGVSMLNVFLKSHHGEEERPEFVAYPHLRIRSKPF 84
Query: 86 PWG 88
PWG
Sbjct: 85 PWG 87
>sp|Q9TTT7|CX6A1_RABIT Cytochrome c oxidase subunit 6A1, mitochondrial OS=Oryctolagus
cuniculus GN=COX6A1 PE=3 SV=1
Length = 109
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 28/63 (44%), Gaps = 4/63 (6%)
Query: 30 SSAHHDDAYETAKWEKITYLGIATCTVLAFYN--LSKGHPHYEEPP--RYEYLHIRNKEF 85
SS H + W+ +TY ++ N L H +E P Y +L IR+K F
Sbjct: 25 SSGAHGEEGSARMWKALTYFVALPGVGVSMLNVYLKSHHEEHERPEFIAYPHLRIRSKPF 84
Query: 86 PWG 88
PWG
Sbjct: 85 PWG 87
>sp|P12074|CX6A1_HUMAN Cytochrome c oxidase subunit 6A1, mitochondrial OS=Homo sapiens
GN=COX6A1 PE=1 SV=4
Length = 109
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 27/63 (42%), Gaps = 4/63 (6%)
Query: 30 SSAHHDDAYETAKWEKITYLGIATCTVLAFYN--LSKGHPHYEEPP--RYEYLHIRNKEF 85
SS H + W+ +T+ ++ N L H +E P Y +L IR K F
Sbjct: 25 SSGAHGEEGSARMWKTLTFFVALPGVAVSMLNVYLKSHHGEHERPEFIAYPHLRIRTKPF 84
Query: 86 PWG 88
PWG
Sbjct: 85 PWG 87
>sp|P07471|CX6A2_BOVIN Cytochrome c oxidase subunit 6A2, mitochondrial OS=Bos taurus
GN=COX6A2 PE=1 SV=2
Length = 97
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 32/68 (47%), Gaps = 7/68 (10%)
Query: 26 RGFASSAHHDDAYETAK-WEKITYL----GIATCTVLAFYNLSKGHPHYEEPPRYEYLHI 80
RG AS+A D A+ W +T+ +A CT+ ++ L GH Y +L I
Sbjct: 10 RGLASAAKGDHGGTGARTWRFLTFGLALPSVALCTLNSW--LHSGHRERPAFIPYHHLRI 67
Query: 81 RNKEFPWG 88
R K F WG
Sbjct: 68 RTKPFSWG 75
>sp|P43023|CX6A2_MOUSE Cytochrome c oxidase subunit 6A2, mitochondrial OS=Mus musculus
GN=Cox6a2 PE=1 SV=2
Length = 97
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 7/69 (10%)
Query: 25 KRGFASSAHHDDAYETAK-WEKITYL----GIATCTVLAFYNLSKGHPHYEEPPRYEYLH 79
R AS+A D A W +T++ G+A C++ + + GH E Y +L
Sbjct: 9 SRSMASAAKGDHGGAGANTWRLLTFVLALPGVALCSLNCW--MHAGHHERPEFIPYHHLR 66
Query: 80 IRNKEFPWG 88
IR K F WG
Sbjct: 67 IRTKPFAWG 75
>sp|P54683|TAGB_DICDI Serine protease/ABC transporter B family protein tagB
OS=Dictyostelium discoideum GN=tagB PE=3 SV=2
Length = 1906
Score = 30.0 bits (66), Expect = 4.8, Method: Composition-based stats.
Identities = 13/41 (31%), Positives = 21/41 (51%)
Query: 39 ETAKWEKITYLGIATCTVLAFYNLSKGHPHYEEPPRYEYLH 79
E + W ++ G+AT +AFY+LS G P Y ++
Sbjct: 445 EDSSWAISSFSGLATDAKIAFYDLSSGSSEPTPPEDYSQMY 485
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.135 0.444
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,073,385
Number of Sequences: 539616
Number of extensions: 1477123
Number of successful extensions: 2319
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 2310
Number of HSP's gapped (non-prelim): 16
length of query: 102
length of database: 191,569,459
effective HSP length: 71
effective length of query: 31
effective length of database: 153,256,723
effective search space: 4750958413
effective search space used: 4750958413
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)