Query 034187
Match_columns 102
No_of_seqs 112 out of 263
Neff 4.7
Searched_HMMs 46136
Date Fri Mar 29 10:44:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034187.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/034187hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02595 cytochrome c oxidase 100.0 2.8E-35 6.1E-40 204.4 7.9 95 1-96 3-98 (102)
2 cd00925 Cyt_c_Oxidase_VIa Cyto 100.0 1.4E-31 3.1E-36 181.2 5.5 61 36-96 9-74 (86)
3 PF02046 COX6A: Cytochrome c o 100.0 1.4E-31 3E-36 189.2 4.6 63 34-96 36-108 (116)
4 KOG3469 Cytochrome c oxidase, 99.9 8.9E-28 1.9E-32 169.3 1.6 90 5-96 4-98 (112)
5 smart00704 ZnF_CDGSH CDGSH-typ 47.5 11 0.00025 21.7 1.1 15 80-94 20-34 (38)
6 KOG0721 Molecular chaperone (D 41.7 26 0.00056 27.9 2.6 42 39-80 66-107 (230)
7 PF11946 DUF3463: Domain of un 32.8 23 0.0005 26.1 1.0 17 85-102 61-77 (138)
8 KOG3461 CDGSH-type Zn-finger c 30.0 28 0.0006 25.5 1.1 15 80-94 99-113 (132)
9 PF09360 zf-CDGSH: Iron-bindin 29.1 16 0.00035 20.9 -0.2 12 81-92 26-37 (38)
10 cd08040 OBF_DNA_ligase_family 26.5 47 0.001 22.1 1.6 19 83-101 64-82 (108)
11 PF10437 Lip_prot_lig_C: Bacte 26.0 15 0.00032 23.6 -0.9 14 76-89 4-17 (86)
12 PF02180 BH4: Bcl-2 homology r 24.8 29 0.00062 19.0 0.3 13 78-90 15-27 (27)
13 cd01850 CDC_Septin CDC/Septin. 21.8 35 0.00076 26.6 0.3 12 78-89 218-229 (276)
14 KOG4487 Uncharacterized conser 21.1 44 0.00094 23.7 0.7 15 83-97 42-56 (110)
No 1
>PLN02595 cytochrome c oxidase subunit VI protein
Probab=100.00 E-value=2.8e-35 Score=204.43 Aligned_cols=95 Identities=62% Similarity=1.018 Sum_probs=84.3
Q ss_pred ChhhhHHHHHHHHHhhhhcCCCCCCCCCCCcccccchHHhhhhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCcccc
Q 034187 1 MAMVRSGLLQTALRRVSSASSAPPKRGFASSAHHDDAYETAKWEKITYLGIATCTVLAFYNLSKGHPHYEEPPRYEYLHI 80 (102)
Q Consensus 1 ~~~~r~~~~r~a~~r~~~~~~~~~~R~~ss~~~~~~~~~~~~Wk~iS~~v~lP~v~l~~y~~~~eh~h~~E~~~Y~yL~i 80 (102)
++++|+++++.++ |..++++.+.+|+++++++|++++++.+||+|||++++||++|++|++++||+|++|+++||||||
T Consensus 3 ~~~~~~~l~~~~~-~~~~~~~~~~~r~~~a~~~h~~a~~a~~WkklS~~~v~~c~~lnaY~l~~eH~~~e~p~~Y~yLrI 81 (102)
T PLN02595 3 TAIVRSALSRAVT-RAAPKTSVAPKRNFSSSAGHDDAYEAAKWEKITYLGIASCTALAVYVLSKGHHHGEDPPAYPYMHI 81 (102)
T ss_pred HHHHHHHHHHHHH-hhccCcccccccccccccCCCcchhhhhhhhhhHHHhHHHHHHHHHHhhhccccCCCCCCCCccee
Confidence 3578999999999 677788888899988877787777889999999999999999999999988877788899999999
Q ss_pred ccCCCCCC-CCCcccee
Q 034187 81 RNKEFPWG-MFPYPCKL 96 (102)
Q Consensus 81 R~K~FPWG-dG~~tL~~ 96 (102)
|||+|||| ||++++|.
T Consensus 82 RtK~FPWG~DG~~e~~h 98 (102)
T PLN02595 82 RNKEFPWGPDGLFEVKH 98 (102)
T ss_pred ecCCCCCCCCccccccc
Confidence 99999999 89888764
No 2
>cd00925 Cyt_c_Oxidase_VIa Cytochrome c oxidase subunit VIa. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit VIa is expressed in two tissue-specific isoforms in mammals but not fish. VIa-H is the heart and skeletal muscle isoform; VIa-L is the liver or non-muscle isoform. Mammalian VIa-H induces a slip in CcO (decrease in proton/electron stoichiometry) at high intramitochondrial ATP/ADP ratios, while VIa-L induces a permanent slip i
Probab=99.97 E-value=1.4e-31 Score=181.22 Aligned_cols=61 Identities=31% Similarity=0.427 Sum_probs=52.8
Q ss_pred chHHhhhhHHHHHHHHHHHHHHHHHH---HHhcCCC--CCCCCCCCccccccCCCCCCCCCcccee
Q 034187 36 DAYETAKWEKITYLGIATCTVLAFYN---LSKGHPH--YEEPPRYEYLHIRNKEFPWGMFPYPCKL 96 (102)
Q Consensus 36 ~~~~~~~Wk~iS~~v~lP~v~l~~y~---~~~eh~h--~~E~~~Y~yL~iR~K~FPWGdG~~tL~~ 96 (102)
+++++++||+|||+|++|||+|++++ +++||+| +||+++|||||||+|+|||||||||||.
T Consensus 9 ~~~~~~~WkkiS~~va~P~v~l~~~n~y~~~~eh~~~~~pe~~~Y~yl~IR~K~FpWGDG~~tlFh 74 (86)
T cd00925 9 AAGTSELWKKISFYVALPAVALCMLNAYLKHKEHEEHERPEFVEYEHLNIRTKPFPWGDGNKTLFH 74 (86)
T ss_pred ccchhhhhhhhhhhhHHHHHHHHHHHHHhhhhcccccCCCCCCCCccceeecCCCCCCCCCccccc
Confidence 34568999999999999999987544 6677653 7899999999999999999999999984
No 3
>PF02046 COX6A: Cytochrome c oxidase subunit VIa; InterPro: IPR001349 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as VIa in vertebrates and fungi. Mammals have two tissue-specific isoforms of VIa, a liver and a heart form. Only one form is found in fish [].; GO: 0004129 cytochrome-c oxidase activity, 0005743 mitochondrial inner membrane, 0005751 mitochondrial respiratory chain complex IV; PDB: 2DYR_G 2EIM_G 2Y69_T 1OCC_G 3AG4_G 3AG2_G 3ASN_G 3ABL_G 1V55_T 2EIJ_T ....
Probab=99.97 E-value=1.4e-31 Score=189.25 Aligned_cols=63 Identities=32% Similarity=0.495 Sum_probs=40.3
Q ss_pred ccchHHhhhhHHHHHHHHHHHHHHHHHH---HHhcCC-C------CCCCCCCCccccccCCCCCCCCCcccee
Q 034187 34 HDDAYETAKWEKITYLGIATCTVLAFYN---LSKGHP-H------YEEPPRYEYLHIRNKEFPWGMFPYPCKL 96 (102)
Q Consensus 34 ~~~~~~~~~Wk~iS~~v~lP~v~l~~y~---~~~eh~-h------~~E~~~Y~yL~iR~K~FPWGdG~~tL~~ 96 (102)
+++++++++||+||++|++|+|+|++++ ++.+|+ | +||+++|||||||+|+|||||||+|||-
T Consensus 36 ~ha~~~~~~Wk~iS~~v~iP~i~l~~~n~~~l~~~H~eH~~h~~~~pe~~~Y~yl~iR~K~FPWGDG~~tLFh 108 (116)
T PF02046_consen 36 EHAEETAKLWKKISFFVAIPAIALCMLNAYYLEKEHHEHREHLPERPEFVPYPYLRIRTKPFPWGDGNHTLFH 108 (116)
T ss_dssp STSSSSHHHHHHHHHHTHHHHHHHHHHHHH-HSTS-----------------TTSS--SS--SSTTSSS-TT-
T ss_pred cchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCCCCCCCccceecCCCCCCCCCCcCCcc
Confidence 4566788999999999999999987544 335553 3 5789999999999999999999999984
No 4
>KOG3469 consensus Cytochrome c oxidase, subunit VIa/COX13 [Energy production and conversion]
Probab=99.93 E-value=8.9e-28 Score=169.32 Aligned_cols=90 Identities=31% Similarity=0.426 Sum_probs=64.0
Q ss_pred hHHHHHHHHHhhhhcCCCCCCCCCCCcccccchHHhhhhHHHHHHHHHHHHHHHHHHHHh---cC-CC-CCCCCCCCccc
Q 034187 5 RSGLLQTALRRVSSASSAPPKRGFASSAHHDDAYETAKWEKITYLGIATCTVLAFYNLSK---GH-PH-YEEPPRYEYLH 79 (102)
Q Consensus 5 r~~~~r~a~~r~~~~~~~~~~R~~ss~~~~~~~~~~~~Wk~iS~~v~lP~v~l~~y~~~~---eh-~h-~~E~~~Y~yL~ 79 (102)
++...|+..++....+.....|..++.+.+++ + +++|++||+|+++||++|++|+.+. || +| ++|++.|+|||
T Consensus 4 ~~~~~rSv~r~~~~ks~~~~~~~~~~~~~~e~-~-s~~Wkkit~~~alP~~al~~~n~y~~~~~~~e~~~~e~~~Y~fl~ 81 (112)
T KOG3469|consen 4 AVPLTRSVTRRLGLKSARHMYRRAAVAGFKEG-G-SRTWKKITFFVALPAVALAMYNAYLGHGHHPEHERPEFRAYEFLN 81 (112)
T ss_pred chhhcccccccccccccccccchhhhhhhcch-h-hhhhhheeeeeeccHHHHHHHHHHHhhccCcccCCccccccchhh
Confidence 34445555544432333333444444554443 3 6899999999999999999888662 22 12 67899999999
Q ss_pred cccCCCCCCCCCcccee
Q 034187 80 IRNKEFPWGMFPYPCKL 96 (102)
Q Consensus 80 iR~K~FPWGdG~~tL~~ 96 (102)
||+|+|||||||+|||.
T Consensus 82 iR~K~fpWgdG~~tLfh 98 (112)
T KOG3469|consen 82 IRNKPFPWGDGNKTLFH 98 (112)
T ss_pred hhcCCCCCCCCcchhcc
Confidence 99999999999999984
No 5
>smart00704 ZnF_CDGSH CDGSH-type zinc finger. Function unknown.
Probab=47.55 E-value=11 Score=21.66 Aligned_cols=15 Identities=27% Similarity=0.191 Sum_probs=12.7
Q ss_pred cccCCCCCCCCCccc
Q 034187 80 IRNKEFPWGMFPYPC 94 (102)
Q Consensus 80 iR~K~FPWGdG~~tL 94 (102)
-++|.+|+=||.|.-
T Consensus 20 ~~S~~~PfCDGsH~~ 34 (38)
T smart00704 20 GRSKNFPYCDGSHKK 34 (38)
T ss_pred CCCCCCCccCCcccC
Confidence 478999999999953
No 6
>KOG0721 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=41.68 E-value=26 Score=27.87 Aligned_cols=42 Identities=12% Similarity=0.139 Sum_probs=29.3
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCcccc
Q 034187 39 ETAKWEKITYLGIATCTVLAFYNLSKGHPHYEEPPRYEYLHI 80 (102)
Q Consensus 39 ~~~~Wk~iS~~v~lP~v~l~~y~~~~eh~h~~E~~~Y~yL~i 80 (102)
+...|++|+++++=.+++..+|.+.+-...+..+-+|+-|.|
T Consensus 66 ~~~~~~~i~lv~~W~v~~fL~y~i~~~~~~~~~fDPyEILGl 107 (230)
T KOG0721|consen 66 SISTKRKVFLVVGWAVIAFLIYKIMNSRRERQKFDPYEILGL 107 (230)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHhhCC
Confidence 445889999988777777778877643322456778887766
No 7
>PF11946 DUF3463: Domain of unknown function (DUF3463); InterPro: IPR022563 This functionally uncharacterised domain is found in bacteria and archaea, which is about 140 amino acids in length and is found C-terminal to PF04055 from PFAM. It contains two conserved sequence motifs: CTPWG and PCYL. This domain is associated with hopanoid biosynthesis associated radical SAM proteins.
Probab=32.75 E-value=23 Score=26.07 Aligned_cols=17 Identities=35% Similarity=0.612 Sum_probs=15.7
Q ss_pred CCCCCCCccceeeeeccC
Q 034187 85 FPWGMFPYPCKLVFVKPC 102 (102)
Q Consensus 85 FPWGdG~~tL~~~~~~~~ 102 (102)
=|||.-+.+.+- .+|||
T Consensus 61 tPWg~pt~n~~G-wq~PC 77 (138)
T PF11946_consen 61 TPWGNPTRNPFG-WQKPC 77 (138)
T ss_pred cCCCCCccCccc-cccCC
Confidence 399999999999 99999
No 8
>KOG3461 consensus CDGSH-type Zn-finger containing protein [General function prediction only]
Probab=30.00 E-value=28 Score=25.51 Aligned_cols=15 Identities=27% Similarity=0.129 Sum_probs=13.2
Q ss_pred cccCCCCCCCCCccc
Q 034187 80 IRNKEFPWGMFPYPC 94 (102)
Q Consensus 80 iR~K~FPWGdG~~tL 94 (102)
=|+|.||.=||.|+-
T Consensus 99 Wrs~kfP~CDGsh~K 113 (132)
T KOG3461|consen 99 WRSKKFPLCDGSHGK 113 (132)
T ss_pred eccCCcccccCcccc
Confidence 599999999999863
No 9
>PF09360 zf-CDGSH: Iron-binding zinc finger CDGSH type; InterPro: IPR018967 This entry represents iron-sulphur domain containing proteins that have a CDGSH sequence motif (although the Ser residue can also be an Ala or Thr), and is found in proteins from a wide range of organisms with the exception of fungi. The CDGSH-type domain binds a redox-active pH-labile 2Fe-2S cluster. The conserved sequence C-X-C-X2-(S/T)-X3-P-X-C-D-G-(S/A/T)-H is a defining feature of this family []. CDGSH-type domains are found in mitoNEET, an iron-containing integral protein of the outer mitochondrian membrane (OMM). MitoNEET forms a dimeric structure with a NEET fold, and contains two domains: a beta-cap region and a cluster-binding domain that coordinated two acid-labile 2Fe-2S clusters (one bound to each protomer) []. The CDGSH iron-sulphur domain is oriented towards the cytoplasm and is tethered to the mitochondrial membrane by a more N-terminal domain found in higher vertebrates, (IPR019610 from INTERPRO) [, ]. The whole protein regulates oxidative capacity and may function in electron transfer, for instance in redox reactions with metabolic intermediates, cofactors and/or proteins localized at the OMM. ; GO: 0051537 2 iron, 2 sulfur cluster binding, 0043231 intracellular membrane-bounded organelle; PDB: 3TBO_A 3FNV_B 3TBM_B 3TBN_A 3S2R_A 3S2Q_A 3LPQ_A 2QH7_A 3EW0_A 2R13_A ....
Probab=29.07 E-value=16 Score=20.92 Aligned_cols=12 Identities=17% Similarity=0.102 Sum_probs=7.0
Q ss_pred ccCCCCCCCCCc
Q 034187 81 RNKEFPWGMFPY 92 (102)
Q Consensus 81 R~K~FPWGdG~~ 92 (102)
++|.+||=||.|
T Consensus 26 ~S~~~PfCDGsH 37 (38)
T PF09360_consen 26 KSKNKPFCDGSH 37 (38)
T ss_dssp --TTTTB--SHH
T ss_pred CCCCCCccCCcC
Confidence 678999999976
No 10
>cd08040 OBF_DNA_ligase_family The Oligonucleotide/oligosaccharide binding (OB)-fold domain is a DNA-binding module that is part of the catalytic core unit of ATP dependent DNA ligases. ATP-dependent polynucleotide ligases catalyze phosphodiester bond formation using nicked nucleic acid substrates with the high energy nucleotide of ATP as a cofactor in a three step reaction mechanism. DNA ligases play a vital role in the diverse processes of DNA replication, recombination and repair. ATP dependent DNA ligases have a highly modular architecture consisting of a unique arrangement of two or more discrete domains including a DNA-binding domain, an adenylation (nucleotidyltransferase (NTase)) domain, and an oligonucleotide/oligosaccharide binding (OB)-fold domain. The adenylation and C-terminal OB-fold domains comprise a catalytic core unit that is common to most members of the ATP-dependent DNA ligase family. The catalytic core unit contains six conserved sequence motifs (I, III, IIIa, IV,
Probab=26.48 E-value=47 Score=22.10 Aligned_cols=19 Identities=16% Similarity=0.092 Sum_probs=12.2
Q ss_pred CCCCCCCCCccceeeeecc
Q 034187 83 KEFPWGMFPYPCKLVFVKP 101 (102)
Q Consensus 83 K~FPWGdG~~tL~~~~~~~ 101 (102)
++|||-.+.+...+|+|+|
T Consensus 64 ~~~~~~~~~~~~~~vwv~P 82 (108)
T cd08040 64 DDHPVWNVGKDLSFVPLYP 82 (108)
T ss_pred CCCcccccccCCCCEEeec
Confidence 5566544444567788888
No 11
>PF10437 Lip_prot_lig_C: Bacterial lipoate protein ligase C-terminus; InterPro: IPR019491 This is the C-terminal domain of a bacterial lipoate protein ligase. There is no conservation between this C terminus and that of vertebrate lipoate protein ligase C-termini, but both are associated with IPR004143 from INTERPRO, further upstream. This C-terminal domain is more stable than IPR004143 from INTERPRO and the hypothesis is that the C-terminal domain has a role in recognising the lipoyl domain and/or transferring the lipoyl group onto it from the lipoyl-AMP intermediate. C-terminal fragments of length 172 to 193 amino acid residues are observed in the eubacterial enzymes whereas in their archaeal counterparts the C-terminal segment is significantly smaller, ranging in size from 87 to 107 amino acid residues. ; PDB: 1X2G_A 3A7R_A 3A7A_A 1X2H_C 1VQZ_A 3R07_C.
Probab=25.99 E-value=15 Score=23.57 Aligned_cols=14 Identities=36% Similarity=1.118 Sum_probs=10.8
Q ss_pred CccccccCCCCCCC
Q 034187 76 EYLHIRNKEFPWGM 89 (102)
Q Consensus 76 ~yL~iR~K~FPWGd 89 (102)
+|-.-+.++||||.
T Consensus 4 ~f~~~~~~rf~~G~ 17 (86)
T PF10437_consen 4 EFTFSKERRFPWGT 17 (86)
T ss_dssp CESEEEEEEETTEE
T ss_pred CCcEeeeeEcCCce
Confidence 45567889999985
No 12
>PF02180 BH4: Bcl-2 homology region 4; InterPro: IPR003093 Apoptosis, or programmed cell death (PCD), is a common and evolutionarily conserved property of all metazoans []. In many biological processes, apoptosis is required to eliminate supernumerary or dangerous (such as pre-cancerous) cells and to promote normal development. Dysregulation of apoptosis can, therefore, contribute to the development of many major diseases including cancer, autoimmunity and neurodegenerative disorders. In most cases, proteins of the caspase family execute the genetic programme that leads to cell death. Bcl-2 proteins are central regulators of caspase activation, and play a key role in cell death by regulating the integrity of the mitochondrial and endoplasmic reticulum (ER) membranes []. At least 20 Bcl-2 proteins have been reported in mammals, and several others have been identified in viruses. Bcl-2 family proteins fall roughly into three subtypes, which either promote cell survival (anti-apoptotic) or trigger cell death (pro-apoptotic). All members contain at least one of four conserved motifs, termed Bcl-2 Homology (BH) domains. Bcl-2 subfamily proteins, which contain at least BH1 and BH2, promote cell survival by inhibiting the adapters needed for the activation of caspases. Pro-apoptotic members potentially exert their effects by displacing the adapters from the pro-survival proteins; these proteins belong either to the Bax subfamily, which contain BH1-BH3, or to the BH3 subfamily, which mostly only feature BH3 []. Thus, the balance between antagonistic family members is believed to play a role in determining cell fate. Members of the wider Bcl-2 family, which also includes Bcl-x, Bcl-w and Mcl-1, are described by their similarity to Bcl-2 protein, a member of the pro-survival Bcl-2 subfamily []. Full-length Bcl-2 proteins feature all four BH domains, seven alpha-helices, and a C-terminal hydrophobic motif that targets the protein to the outer mitochondrial membrane, ER and nuclear envelope. Active cell suicide (apoptosis) is induced by events such as growth factor withdrawal and toxins. It is controlled by regulators, which have either an inhibitory effect on programmed cell death (anti-apoptotic) or block the protective effect of inhibitors (pro-apoptotic) [, ]. Many viruses have found a way of countering defensive apoptosis by encoding their own anti-apoptosis genes preventing their target-cells from dying too soon. All proteins belonging to the Bcl-2 family [] contain either a BH1, BH2, BH3, or BH4 domain. All anti-apoptotic proteins contain BH1 and BH2 domains, some of them contain an additional N-terminal BH4 domain (Bcl-2, Bcl-x(L), Bcl-w), which is never seen in pro-apoptotic proteins, except for Bcl-x(S). On the other hand, all pro-apoptotic proteins contain a BH3 domain (except for Bad) necessary for dimerisation with other proteins of Bcl-2 family and crucial for their killing activity, some of them also contain BH1 and BH2 domains (Bax, Bak). The BH3 domain is also present in some anti-apoptotic protein, such as Bcl-2 or Bcl-x(L). Proteins that are known to contain these domains include vertebrate Bcl-2 (alpha and beta isoforms) and Bcl-x (isoforms (Bcl-x(L) and Bcl-x(S)); mammalian proteins Bax and Bak; mouse protein Bid; Xenopus laevis proteins Xr1 and Xr11; human induced myeloid leukemia cell differentiation protein MCL1 and Caenorhabditis elegans protein ced-9.; GO: 0042981 regulation of apoptosis; PDB: 1AF3_A 2PON_B 1YSN_A 3PL7_B 3R85_A 2O2N_A 2P1L_C 1R2G_A 2O1Y_A 1BXL_A ....
Probab=24.80 E-value=29 Score=18.96 Aligned_cols=13 Identities=8% Similarity=0.468 Sum_probs=9.2
Q ss_pred cccccCCCCCCCC
Q 034187 78 LHIRNKEFPWGMF 90 (102)
Q Consensus 78 L~iR~K~FPWGdG 90 (102)
-+++.|.|+|++.
T Consensus 15 yKLsQrgy~w~~~ 27 (27)
T PF02180_consen 15 YKLSQRGYVWEEA 27 (27)
T ss_dssp HHHHHTTSTSTTT
T ss_pred HHhhhcCCCCCCC
Confidence 3567788888763
No 13
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=21.77 E-value=35 Score=26.60 Aligned_cols=12 Identities=33% Similarity=1.268 Sum_probs=9.6
Q ss_pred cccccCCCCCCC
Q 034187 78 LHIRNKEFPWGM 89 (102)
Q Consensus 78 L~iR~K~FPWGd 89 (102)
-.+|.+.||||-
T Consensus 218 ~~~~~R~y~WG~ 229 (276)
T cd01850 218 KKVRGRKYPWGV 229 (276)
T ss_pred cEEEEecCCccE
Confidence 357889999994
No 14
>KOG4487 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.06 E-value=44 Score=23.74 Aligned_cols=15 Identities=7% Similarity=-0.398 Sum_probs=12.0
Q ss_pred CCCCCCCCCccceee
Q 034187 83 KEFPWGMFPYPCKLV 97 (102)
Q Consensus 83 K~FPWGdG~~tL~~~ 97 (102)
-+|-|+||+.+++-+
T Consensus 42 Gr~c~~D~~q~~~~~ 56 (110)
T KOG4487|consen 42 GRFCEQDGEQTLIRF 56 (110)
T ss_pred cceeccCCCeEEEEE
Confidence 479999999887643
Done!