Query 034187
Match_columns 102
No_of_seqs 112 out of 263
Neff 4.7
Searched_HMMs 29240
Date Mon Mar 25 18:21:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034187.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034187hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2y69_G Cytochrome C oxidase po 100.0 4.1E-34 1.4E-38 196.3 6.3 76 20-96 4-83 (97)
2 1v54_G Cytochrome C oxidase po 100.0 5.3E-32 1.8E-36 182.0 6.3 61 35-96 8-71 (85)
3 2a2m_A Hypothetical protein BT 55.0 3.2 0.00011 31.0 0.5 25 74-98 17-41 (258)
4 4ezf_A Mitoneet, CDGSH iron-su 49.4 3.9 0.00013 26.5 0.2 15 80-94 44-58 (77)
5 3fnv_A CDGSH iron sulfur domai 38.0 7.5 0.00026 25.5 0.2 16 79-94 49-64 (83)
6 3s2r_A AT5G51720/MIO24_14; red 36.7 8.1 0.00028 25.3 0.2 21 74-94 45-66 (83)
7 3l7h_A RE64145P, roadblock; LC 23.7 19 0.00063 23.7 0.2 13 73-85 65-77 (97)
8 3ew0_A Mitoneet, CDGSH iron su 21.3 22 0.00075 23.0 0.2 16 79-94 46-61 (80)
9 1pxv_A Cysteine protease; hydr 20.9 51 0.0018 24.3 2.1 23 65-87 2-32 (183)
10 3s9f_A Tryparedoxin; thioredox 19.5 37 0.0013 22.3 1.1 9 82-90 157-165 (165)
No 1
>2y69_G Cytochrome C oxidase polypeptide 6A2; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=100.00 E-value=4.1e-34 Score=196.26 Aligned_cols=76 Identities=24% Similarity=0.231 Sum_probs=57.5
Q ss_pred CCCCCCCCCCCccccc-chHHhhhhHHHHHHHHHHHHHHHHHHHH---hcCCCCCCCCCCCccccccCCCCCCCCCccce
Q 034187 20 SSAPPKRGFASSAHHD-DAYETAKWEKITYLGIATCTVLAFYNLS---KGHPHYEEPPRYEYLHIRNKEFPWGMFPYPCK 95 (102)
Q Consensus 20 ~~~~~~R~~ss~~~~~-~~~~~~~Wk~iS~~v~lP~v~l~~y~~~---~eh~h~~E~~~Y~yL~iR~K~FPWGdG~~tL~ 95 (102)
++.+.+|.|+|+++.+ +++++++||+||++|++|+|+|++++.+ +| +|+||+++|||||||+|+|||||||||||
T Consensus 4 ~~~~~~r~~as~a~~~ha~~~~~~WkkiS~~va~P~v~l~~~n~y~~~~e-h~~~E~~~Y~yl~IR~K~FPWGDG~~tLF 82 (97)
T 2y69_G 4 PLKSLSRGLASAAKGDHGGTGARTWRFLTFGLALPSVALCTLNSWLHSGH-RERPAFIPYHHLRIRTKPFSWGDGNHTFF 82 (97)
T ss_dssp ---------CCCSCCCCSSCCHHHHHHHHHHTHHHHHHHHHHHHTTSCSC-CCCCCCCCCTTSSCCSSCCSSTTSSSCTT
T ss_pred cccccccccccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccc-CCCCCCCCCchhhhccCCCCCCCCCcCcc
Confidence 3446678888876544 4577899999999999999999877754 44 36899999999999999999999999998
Q ss_pred e
Q 034187 96 L 96 (102)
Q Consensus 96 ~ 96 (102)
.
T Consensus 83 h 83 (97)
T 2y69_G 83 H 83 (97)
T ss_dssp C
T ss_pred c
Confidence 5
No 2
>1v54_G Cytochrome C oxidase polypeptide VIA-heart; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.2.1 PDB: 1v55_G* 2dyr_G* 2dys_G* 2eij_G* 2eik_G* 2eil_G* 2eim_G* 2ein_G* 2zxw_G* 3abk_G* 3abl_G* 3abm_G* 3ag1_G* 3ag2_G* 3ag3_G* 3ag4_G* 3asn_G* 3aso_G* 2occ_G* 1oco_G* ...
Probab=99.97 E-value=5.3e-32 Score=181.99 Aligned_cols=61 Identities=20% Similarity=0.172 Sum_probs=53.9
Q ss_pred cchHHhhhhHHHHHHHHHHHHHHHHHHHH---hcCCCCCCCCCCCccccccCCCCCCCCCcccee
Q 034187 35 DDAYETAKWEKITYLGIATCTVLAFYNLS---KGHPHYEEPPRYEYLHIRNKEFPWGMFPYPCKL 96 (102)
Q Consensus 35 ~~~~~~~~Wk~iS~~v~lP~v~l~~y~~~---~eh~h~~E~~~Y~yL~iR~K~FPWGdG~~tL~~ 96 (102)
++++++++||+||++|++|||+|++++.+ +| +|+||+++|||||||+|+|||||||||||.
T Consensus 8 ha~~~~~~Wkkis~~va~P~v~l~~~n~y~~~~e-~~~pE~~~Y~yl~IR~K~FPWGdGd~tLFh 71 (85)
T 1v54_G 8 HGGTGARTWRFLTFGLALPSVALCTLNSWLHSGH-RERPAFIPYHHLRIRTKPFSWGDGNHTFFH 71 (85)
T ss_dssp CSCCCHHHHHHHHHHTHHHHHHHHHHHHTTSCSC-CCCCCCCCCTTSSCCSSCCSSTTSSSCTTC
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccC-CCCCCCCCCchhheecCCCCCCCCCcCccc
Confidence 35577899999999999999999987765 33 468999999999999999999999999985
No 3
>2a2m_A Hypothetical protein BT3146; putative TENA family transcriptional regulator, structural G joint center for structural genomics; 1.88A {Bacteroides thetaiotaomicron} SCOP: a.132.1.3 PDB: 2a2o_A
Probab=54.95 E-value=3.2 Score=31.02 Aligned_cols=25 Identities=12% Similarity=0.111 Sum_probs=17.8
Q ss_pred CCCccccccCCCCCCCCCccceeee
Q 034187 74 RYEYLHIRNKEFPWGMFPYPCKLVF 98 (102)
Q Consensus 74 ~Y~yL~iR~K~FPWGdG~~tL~~~~ 98 (102)
+-..||+|+.-.|||.|+-.|+.+.
T Consensus 17 ~~~~~~~~~~~~~~~~~~gpl~~~~ 41 (258)
T 2a2m_A 17 KNQWLRKRTFAIPASRLTGRLTTLK 41 (258)
T ss_dssp -----CCCCCCCCGGGCCGGGTTCC
T ss_pred HHHHHHHhhcccccccCCCCccCcc
Confidence 4578999999999999998888654
No 4
>4ezf_A Mitoneet, CDGSH iron-sulfur domain-containing protein 1; 2Fe-2S proteins, membrane, mitochondrion, signal-anchor, transmembrane; 1.19A {Homo sapiens} PDB: 2qd0_A 3ree_A 2r13_A 3ew0_A 2qh7_A 4f1e_A 4f2c_A 4f28_A 3lpq_A
Probab=49.43 E-value=3.9 Score=26.53 Aligned_cols=15 Identities=27% Similarity=0.259 Sum_probs=12.9
Q ss_pred cccCCCCCCCCCccc
Q 034187 80 IRNKEFPWGMFPYPC 94 (102)
Q Consensus 80 iR~K~FPWGdG~~tL 94 (102)
=|+|.|||=||.|..
T Consensus 44 ~~Sk~~PfCDGsH~~ 58 (77)
T 4ezf_A 44 WRSKKFPFCDGAHTK 58 (77)
T ss_dssp SCCTTTTBCCSHHHH
T ss_pred CCCCCCCccCCchhh
Confidence 489999999999863
No 5
>3fnv_A CDGSH iron sulfur domain-containing protein 2; diabetes, membrane bound, thiazolidinedione, oxidative stres endoplasmic reticulum, membrane; 2.10A {Homo sapiens}
Probab=37.96 E-value=7.5 Score=25.49 Aligned_cols=16 Identities=25% Similarity=0.021 Sum_probs=13.4
Q ss_pred ccccCCCCCCCCCccc
Q 034187 79 HIRNKEFPWGMFPYPC 94 (102)
Q Consensus 79 ~iR~K~FPWGdG~~tL 94 (102)
--|+|.||+=||.|..
T Consensus 49 C~~S~~~PfCDGsH~~ 64 (83)
T 3fnv_A 49 CWRSKTFPACDGSHNK 64 (83)
T ss_dssp SSCCTTTTBCCSHHHH
T ss_pred CCCCCCCCccCchhhh
Confidence 4589999999999864
No 6
>3s2r_A AT5G51720/MIO24_14; redox, Fe-S cluster, metal binding protein; 1.14A {Arabidopsis thaliana} PDB: 3s2q_A
Probab=36.70 E-value=8.1 Score=25.34 Aligned_cols=21 Identities=19% Similarity=0.061 Sum_probs=15.1
Q ss_pred CCCccc-cccCCCCCCCCCccc
Q 034187 74 RYEYLH-IRNKEFPWGMFPYPC 94 (102)
Q Consensus 74 ~Y~yL~-iR~K~FPWGdG~~tL 94 (102)
.+.|=| =|+|.||+=||.|..
T Consensus 45 ~~~~CrC~~Sk~~P~CDGSH~k 66 (83)
T 3s2r_A 45 ITPYCRCWRSGTFPLCDGSCVK 66 (83)
T ss_dssp EEEECSSSCCTTTTBCCSHHHH
T ss_pred ceEEEecCCCCCCCccCchhHH
Confidence 344433 489999999999843
No 7
>3l7h_A RE64145P, roadblock; LC7, KM23, dynein, light chain, hydrolase, protei transport; 1.95A {Drosophila melanogaster} SCOP: d.110.7.1 PDB: 3l9k_A 1z09_A 2e8j_A 1y4o_A
Probab=23.70 E-value=19 Score=23.65 Aligned_cols=13 Identities=23% Similarity=0.544 Sum_probs=11.0
Q ss_pred CCCCccccccCCC
Q 034187 73 PRYEYLHIRNKEF 85 (102)
Q Consensus 73 ~~Y~yL~iR~K~F 85 (102)
-+-.+||||||.+
T Consensus 65 del~fLRiRTkk~ 77 (97)
T 3l7h_A 65 NDMTFLRVRSKKH 77 (97)
T ss_dssp CCEEEEEEEESSC
T ss_pred CCeEEEEEEeCCc
Confidence 4679999999976
No 8
>3ew0_A Mitoneet, CDGSH iron sulfur domain-containing protein 1; mitochondrial outer membrane, 2Fe-2S proteins, isotopic LABE highyield expression; 1.40A {Homo sapiens} PDB: 2r13_A 2qd0_A 3ree_A 2qh7_A 3lpq_A
Probab=21.35 E-value=22 Score=22.95 Aligned_cols=16 Identities=25% Similarity=0.216 Sum_probs=13.2
Q ss_pred ccccCCCCCCCCCccc
Q 034187 79 HIRNKEFPWGMFPYPC 94 (102)
Q Consensus 79 ~iR~K~FPWGdG~~tL 94 (102)
--|+|.+||=||.|..
T Consensus 46 Cg~S~~~PfCDGsH~~ 61 (80)
T 3ew0_A 46 CWRSKKFPFCDGAHTK 61 (80)
T ss_dssp SSCCTTTTBCCSHHHH
T ss_pred CCCCCCCcccCCccCC
Confidence 4578999999999864
No 9
>1pxv_A Cysteine protease; hydrolase; 1.80A {Staphylococcus aureus} SCOP: d.3.1.1 PDB: 1y4h_A
Probab=20.90 E-value=51 Score=24.29 Aligned_cols=23 Identities=26% Similarity=0.498 Sum_probs=14.3
Q ss_pred cCCCCCCCC------CCCccccccC--CCCC
Q 034187 65 GHPHYEEPP------RYEYLHIRNK--EFPW 87 (102)
Q Consensus 65 eh~h~~E~~------~Y~yL~iR~K--~FPW 87 (102)
||+|++||- .++-++||-- ..||
T Consensus 2 ~~~~~~~~~~~~~~n~l~N~~I~ETQg~~~W 32 (183)
T 1pxv_A 2 HHHHHHEFDQVQYENTLKNFKIREQQFDNSW 32 (183)
T ss_dssp CCCCCCTTCCEEEEEECTTCCCCCCCCSSSC
T ss_pred CcccccccchHHHhhhccCceeeeccCcCch
Confidence 455566764 3556777765 4566
No 10
>3s9f_A Tryparedoxin; thioredoxin fold, disulfide reductase, electron transport; 1.80A {Leishmania major}
Probab=19.52 E-value=37 Score=22.27 Aligned_cols=9 Identities=33% Similarity=0.896 Sum_probs=5.9
Q ss_pred cCCCCCCCC
Q 034187 82 NKEFPWGMF 90 (102)
Q Consensus 82 ~K~FPWGdG 90 (102)
.+.|||.|.
T Consensus 157 ~~~fpw~~~ 165 (165)
T 3s9f_A 157 GEQFPWRDE 165 (165)
T ss_dssp CTTTTCCCC
T ss_pred cccCCCCCC
Confidence 345888874
Done!