Query 034188
Match_columns 102
No_of_seqs 111 out of 1030
Neff 9.3
Searched_HMMs 29240
Date Mon Mar 25 18:22:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034188.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034188hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1a7i_A QCRP2 (LIM1); LIM domai 99.8 6.5E-20 2.2E-24 102.6 4.5 71 1-71 1-71 (81)
2 2cu8_A Cysteine-rich protein 2 99.8 5.1E-19 1.7E-23 97.8 6.3 71 1-71 3-74 (76)
3 2d8y_A Eplin protein; LIM doma 99.8 4.5E-19 1.5E-23 101.2 5.9 75 6-80 14-88 (91)
4 2dj7_A Actin-binding LIM prote 99.7 2.1E-18 7.3E-23 96.3 5.8 66 5-71 13-78 (80)
5 1g47_A Pinch protein; LIM doma 99.7 4.2E-18 1.4E-22 94.2 6.0 69 3-71 7-76 (77)
6 1iml_A CRIP, cysteine rich int 99.7 9.3E-18 3.2E-22 92.7 6.6 66 8-73 1-67 (76)
7 1x4k_A Skeletal muscle LIM-pro 99.7 1.6E-17 5.3E-22 90.8 6.5 66 7-72 5-71 (72)
8 1wyh_A SLIM 2, skeletal muscle 99.7 1.2E-17 4.1E-22 91.3 6.0 65 7-71 5-70 (72)
9 2cur_A Skeletal muscle LIM-pro 99.7 2.1E-17 7.1E-22 89.7 6.3 65 6-71 4-68 (69)
10 1m3v_A FLIN4, fusion of the LI 99.7 1.7E-17 5.9E-22 99.3 6.2 78 6-83 4-86 (122)
11 2d8z_A Four and A half LIM dom 99.7 1.8E-17 6.3E-22 90.1 5.7 65 6-71 4-68 (70)
12 1j2o_A FLIN2, fusion of rhombo 99.7 1.4E-17 4.7E-22 98.6 5.4 70 5-74 1-72 (114)
13 1nyp_A Pinch protein; LIM doma 99.7 1.6E-17 5.6E-22 89.4 5.1 62 7-69 5-66 (66)
14 2dar_A PDZ and LIM domain prot 99.7 3E-17 1E-21 93.4 6.2 67 5-72 23-89 (90)
15 2cup_A Skeletal muscle LIM-pro 99.7 3.6E-17 1.2E-21 94.7 6.2 75 5-79 3-79 (101)
16 1x68_A FHL5 protein; four-and- 99.7 1.7E-17 5.8E-22 91.7 4.3 67 7-73 5-74 (76)
17 2d8x_A Protein pinch; LIM doma 99.7 6.7E-17 2.3E-21 87.9 6.6 66 5-71 3-68 (70)
18 1x64_A Alpha-actinin-2 associa 99.7 4.7E-17 1.6E-21 92.4 6.1 65 6-71 24-88 (89)
19 2xqn_T Testin, TESS; metal-bin 99.7 7.5E-17 2.6E-21 96.8 7.3 72 7-78 3-75 (126)
20 1x63_A Skeletal muscle LIM-pro 99.7 7.2E-17 2.4E-21 90.2 6.4 66 7-72 15-81 (82)
21 1x4l_A Skeletal muscle LIM-pro 99.7 4.3E-17 1.5E-21 89.1 5.1 66 5-70 3-71 (72)
22 1x3h_A Leupaxin; paxillin fami 99.7 6.1E-17 2.1E-21 90.1 5.7 64 7-71 15-78 (80)
23 1x62_A C-terminal LIM domain p 99.7 2.5E-17 8.7E-22 91.6 4.0 66 5-71 13-78 (79)
24 1b8t_A Protein (CRP1); LIM dom 99.7 4.6E-16 1.6E-20 99.4 9.4 71 1-71 1-71 (192)
25 2dlo_A Thyroid receptor-intera 99.7 1.7E-16 5.8E-21 88.6 5.9 66 5-71 13-79 (81)
26 2cuq_A Four and A half LIM dom 99.7 2E-16 6.8E-21 88.0 5.7 65 7-72 15-79 (80)
27 3f6q_B LIM and senescent cell 99.6 2.7E-16 9.1E-21 85.7 5.8 62 6-67 10-72 (72)
28 2co8_A NEDD9 interacting prote 99.6 3.2E-17 1.1E-21 91.9 2.0 66 4-69 12-79 (82)
29 2cor_A Pinch protein; LIM doma 99.6 3.4E-16 1.1E-20 87.1 5.4 65 5-71 13-77 (79)
30 1x61_A Thyroid receptor intera 99.6 5.8E-16 2E-20 84.5 5.8 63 6-68 4-67 (72)
31 2ehe_A Four and A half LIM dom 99.6 1.1E-16 3.9E-21 89.4 2.9 65 7-71 15-80 (82)
32 1b8t_A Protein (CRP1); LIM dom 99.6 2E-15 7E-20 96.4 8.5 69 5-73 113-181 (192)
33 2jtn_A LIM domain-binding prot 99.6 1.5E-15 5E-20 96.4 7.7 74 5-79 58-132 (182)
34 2xjy_A Rhombotin-2; oncoprotei 99.6 1E-15 3.6E-20 92.2 6.6 72 7-78 2-78 (131)
35 2rgt_A Fusion of LIM/homeobox 99.6 8.1E-16 2.8E-20 96.5 6.3 74 5-79 4-78 (169)
36 2l4z_A DNA endonuclease RBBP8, 99.6 6.7E-16 2.3E-20 92.5 4.2 61 7-67 61-123 (123)
37 1x6a_A LIMK-2, LIM domain kina 99.6 2.6E-15 8.8E-20 83.7 4.8 64 7-71 15-80 (81)
38 2l3k_A Rhombotin-2, linker, LI 99.6 2.6E-15 8.8E-20 89.9 4.7 69 7-75 8-78 (123)
39 1rut_X Flinc4, fusion protein 99.6 3.7E-15 1.3E-19 95.0 5.2 73 6-78 4-81 (188)
40 1wig_A KIAA1808 protein; LIM d 99.6 5.8E-15 2E-19 80.9 5.3 62 6-68 4-66 (73)
41 2iyb_E Testin, TESS, TES; LIM 99.5 1.3E-14 4.3E-19 77.8 5.0 58 7-64 2-63 (65)
42 2egq_A FHL1 protein; LIM domai 99.5 8.9E-15 3.1E-19 80.7 4.6 58 7-64 15-76 (77)
43 1v6g_A Actin binding LIM prote 99.4 1.4E-13 4.7E-18 76.6 3.8 62 7-69 15-77 (81)
44 2xjy_A Rhombotin-2; oncoprotei 99.4 3.6E-13 1.2E-17 81.1 4.6 61 9-69 68-130 (131)
45 1rut_X Flinc4, fusion protein 99.3 1.9E-12 6.4E-17 82.4 3.9 63 9-71 71-135 (188)
46 2xqn_T Testin, TESS; metal-bin 99.3 3.4E-12 1.2E-16 76.3 4.4 60 7-66 63-125 (126)
47 2rgt_A Fusion of LIM/homeobox 99.2 3E-11 1E-15 75.6 4.7 63 7-69 65-130 (169)
48 2jtn_A LIM domain-binding prot 99.1 1E-10 3.6E-15 73.9 4.2 59 7-65 119-180 (182)
49 1zfo_A LAsp-1; LIM domain, zin 98.4 5.1E-08 1.7E-12 44.5 0.9 29 7-35 3-31 (31)
50 2cup_A Skeletal muscle LIM-pro 98.2 4.6E-07 1.6E-11 51.7 2.2 35 7-41 66-101 (101)
51 1m3v_A FLIN4, fusion of the LI 96.5 0.00039 1.3E-08 40.9 -0.3 62 9-70 34-118 (122)
52 2cuq_A Four and A half LIM dom 95.4 0.0019 6.5E-08 34.8 -0.5 18 54-71 2-19 (80)
53 2ehe_A Four and A half LIM dom 95.4 0.0025 8.6E-08 34.5 -0.1 25 53-77 1-26 (82)
54 1x6a_A LIMK-2, LIM domain kina 95.1 0.0035 1.2E-07 33.9 -0.0 23 55-77 3-26 (81)
55 2egq_A FHL1 protein; LIM domai 94.7 0.0028 9.5E-08 33.9 -1.2 9 37-45 18-26 (77)
56 1x3h_A Leupaxin; paxillin fami 94.4 0.0032 1.1E-07 33.9 -1.4 25 36-61 17-41 (80)
57 1v6g_A Actin binding LIM prote 94.0 0.0082 2.8E-07 32.4 -0.3 25 36-61 17-41 (81)
58 1x63_A Skeletal muscle LIM-pro 92.8 0.01 3.4E-07 32.0 -1.2 26 36-61 17-43 (82)
59 1j2o_A FLIN2, fusion of rhombo 91.3 0.03 1E-06 32.2 -0.4 61 8-68 31-108 (114)
60 2ct0_A Non-SMC element 1 homol 73.2 1.3 4.6E-05 23.5 1.1 17 3-19 11-27 (74)
61 3nw0_A Non-structural maintena 63.2 2.8 9.4E-05 27.2 1.3 15 6-20 179-193 (238)
62 2gvi_A Conserved hypothetical 60.0 5.2 0.00018 25.3 2.1 30 35-64 173-202 (204)
63 1jjd_A Metallothionein, SMTA; 59.8 8.3 0.00029 19.3 2.4 29 36-64 9-38 (55)
64 2cs3_A Protein C14ORF4, MY039 57.2 3.8 0.00013 22.3 0.9 31 9-39 17-47 (93)
65 1v9x_A Poly (ADP-ribose) polym 53.5 5.5 0.00019 22.9 1.3 15 7-21 20-34 (114)
66 1uw0_A DNA ligase III; DNA rep 49.1 9.3 0.00032 22.0 1.8 15 7-21 15-29 (117)
67 2dmj_A Poly (ADP-ribose) polym 48.1 6 0.0002 22.4 0.8 15 7-21 25-39 (106)
68 2das_A Zinc finger MYM-type pr 42.2 32 0.0011 17.5 2.9 33 34-66 20-55 (62)
69 2xeu_A Ring finger protein 4; 37.9 12 0.00042 18.0 1.0 12 53-64 28-39 (64)
70 1loi_A Cyclic 3',5'-AMP specif 37.6 5.3 0.00018 16.2 -0.4 13 35-47 6-18 (26)
71 3od8_A Poly [ADP-ribose] polym 36.2 10 0.00034 21.9 0.5 14 8-21 39-52 (116)
72 3odc_A Poly [ADP-ribose] polym 35.9 12 0.0004 21.4 0.8 15 7-21 19-33 (111)
73 2ecl_A Ring-box protein 2; RNF 34.3 20 0.0007 18.6 1.6 10 8-17 16-25 (81)
74 1wfh_A Zinc finger (AN1-like) 33.0 22 0.00074 18.3 1.4 26 36-61 17-42 (64)
75 1chc_A Equine herpes virus-1 r 32.4 16 0.00056 18.0 0.9 9 9-17 7-15 (68)
76 1x4j_A Ring finger protein 38; 31.8 34 0.0011 17.2 2.2 32 34-65 23-56 (75)
77 2e5r_A Dystrobrevin alpha; ZZ 31.5 54 0.0018 16.5 3.3 35 28-64 7-44 (63)
78 2vpb_A Hpygo1, pygopus homolog 30.8 19 0.00066 18.3 1.1 28 8-35 9-40 (65)
79 1wjv_A Cell growth regulating 30.4 2.8 9.7E-05 22.6 -2.3 38 9-46 12-49 (79)
80 2cs2_A Poly [ADP-ribose] polym 29.7 22 0.00075 21.0 1.3 15 7-21 27-41 (134)
81 2yrc_A Protein transport prote 29.6 37 0.0013 17.0 2.0 28 3-30 5-34 (59)
82 2d8v_A Zinc finger FYVE domain 28.8 56 0.0019 16.9 2.6 13 53-65 26-38 (67)
83 1wfp_A Zinc finger (AN1-like) 28.7 28 0.00095 18.5 1.4 28 35-62 26-53 (74)
84 1wg2_A Zinc finger (AN1-like) 27.6 22 0.00075 18.3 0.9 25 37-61 18-42 (64)
85 2ecm_A Ring finger and CHY zin 26.4 37 0.0013 15.7 1.6 9 9-17 7-15 (55)
86 1wfl_A Zinc finger protein 216 25.7 23 0.00078 18.8 0.8 26 36-61 27-52 (74)
87 1weo_A Cellulose synthase, cat 24.7 69 0.0024 17.6 2.6 11 7-17 16-26 (93)
88 2ep4_A Ring finger protein 24; 23.5 58 0.002 16.1 2.2 36 36-71 17-56 (74)
89 2i5o_A DNA polymerase ETA; zin 23.5 31 0.0011 15.8 0.9 12 8-19 10-21 (39)
90 2y43_A E3 ubiquitin-protein li 23.3 78 0.0027 16.7 2.8 34 34-68 22-56 (99)
91 2ckl_A Polycomb group ring fin 21.9 1E+02 0.0036 16.5 3.3 34 34-68 15-49 (108)
92 1jm7_B BARD1, BRCA1-associated 21.2 72 0.0024 17.6 2.4 9 9-17 24-32 (117)
93 3vk6_A E3 ubiquitin-protein li 21.2 23 0.00077 20.0 0.2 9 10-18 4-12 (101)
94 4av1_A Poly [ADP-ribose] polym 20.5 21 0.00072 22.9 0.0 15 7-21 143-157 (223)
No 1
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=99.79 E-value=6.5e-20 Score=102.61 Aligned_cols=71 Identities=30% Similarity=0.709 Sum_probs=57.5
Q ss_pred CCccCCccccccccceeecCceEEecCccccccCcccccccccCcCcceEeeCCeeeeHHHHHHHhCCCCC
Q 034188 1 MSFIGTQQKCKVCEKTVYPVEQLSADGIVYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKPHFEQLFKESGN 71 (102)
Q Consensus 1 ~~~~~~~~~C~~C~~~i~~~~~~~~~~~~~h~~Cf~C~~C~~~l~~~~~~~~~~~~~C~~~~~~~~~~~c~ 71 (102)
|+|.++.++|..|++.|.+.+.+.+.++.||.+||+|..|.++|....|+..++++||..||.++|+++|.
T Consensus 1 m~~~~~~~~C~~C~~~I~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~c~ 71 (81)
T 1a7i_A 1 MPNWGGGNKCGACGRTVYHAEEVQCDGRSFHRCCFLCMVCRKNLDSTTVAIHDAEVYCKSCYGKKYGPKGY 71 (81)
T ss_dssp -------CBCSSSCCBCSSTTEEEETTEEEESSSEECSSSCCEECSSCCEEETTEEECSHHHHHHCC----
T ss_pred CCCCCCCCcCcCcCccccCceeEEeCCcccccccCccCCCCCCCCCCCeEeeCCEEECHHHHHHHhCCccc
Confidence 78888899999999999878888999999999999999999999888899999999999999999999997
No 2
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.78 E-value=5.1e-19 Score=97.84 Aligned_cols=71 Identities=34% Similarity=0.679 Sum_probs=64.8
Q ss_pred CCccCCccccccccceeecCceEEecCccccccCcccccccccCcCcceEeeCCeeeeH-HHHHHHhCCCCC
Q 034188 1 MSFIGTQQKCKVCEKTVYPVEQLSADGIVYHKSCFKCSHCKGTLKLSNYSSMEGVLYCK-PHFEQLFKESGN 71 (102)
Q Consensus 1 ~~~~~~~~~C~~C~~~i~~~~~~~~~~~~~h~~Cf~C~~C~~~l~~~~~~~~~~~~~C~-~~~~~~~~~~c~ 71 (102)
+.|.+.+++|..|++.|.+.+.+.+.++.||.+||+|..|..+|....|+..++.+||. .||.++|+++|.
T Consensus 3 ~~~~~~~~~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~cy~~~f~~kc~ 74 (76)
T 2cu8_A 3 SGSSGMASKCPKCDKTVYFAEKVSSLGKDWHKFCLKCERCSKTLTPGGHAEHDGKPFCHKPCYATLFGSGPS 74 (76)
T ss_dssp CSCCCCCCBCTTTCCBCCTTTEEEETTEEEETTTCBCSSSCCBCCTTSCEEETTEEECTTTHHHHHSCSSCS
T ss_pred cccCCCCCCCcCCCCEeECCeEEEECCeEeeCCCCCCCCCCCccCCCceEeECCEEecchHHHHHhcccccC
Confidence 35667788999999999878888999999999999999999999987899999999999 799999999885
No 3
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.77 E-value=4.5e-19 Score=101.24 Aligned_cols=75 Identities=49% Similarity=1.057 Sum_probs=68.9
Q ss_pred CccccccccceeecCceEEecCccccccCcccccccccCcCcceEeeCCeeeeHHHHHHHhCCCCCCCCCCCCCC
Q 034188 6 TQQKCKVCEKTVYPVEQLSADGIVYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKPHFEQLFKESGNFNKNFQSPA 80 (102)
Q Consensus 6 ~~~~C~~C~~~i~~~~~~~~~~~~~h~~Cf~C~~C~~~l~~~~~~~~~~~~~C~~~~~~~~~~~c~~~~~~~~~~ 80 (102)
+.++|..|++.|.+.+.+.+.++.||..||+|..|..+|....|+..++.+||..||.++|+++|.++..|....
T Consensus 14 ~~~~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~f~~kc~~~~g~g~~~ 88 (91)
T 2d8y_A 14 ARETCVECQKTVYPMERLLANQQVFHISCFRCSYCNNKLSLGTYASLHGRIYCKPHFNQLFKSKGNYDEGFGSGP 88 (91)
T ss_dssp SSCBCTTTCCBCCTTSEEECSSSEEETTTCBCTTTCCBCCTTTCCCSSSCCCCHHHHHHHSCCCSCCCSCCCCCC
T ss_pred CCCcCccCCCccCCceeEEECCCEECCCCCeeCCCCCCCCCCCcEeECCEEECHHHHHHHhCCCcCccCCcCCCC
Confidence 456999999999887888999999999999999999999987888999999999999999999999988887755
No 4
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.75 E-value=2.1e-18 Score=96.35 Aligned_cols=66 Identities=29% Similarity=0.583 Sum_probs=60.6
Q ss_pred CCccccccccceeecCceEEecCccccccCcccccccccCcCcceEeeCCeeeeHHHHHHHhCCCCC
Q 034188 5 GTQQKCKVCEKTVYPVEQLSADGIVYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKPHFEQLFKESGN 71 (102)
Q Consensus 5 ~~~~~C~~C~~~i~~~~~~~~~~~~~h~~Cf~C~~C~~~l~~~~~~~~~~~~~C~~~~~~~~~~~c~ 71 (102)
.+.++|..|++.|.+.+.+.++++.||.+||+|..|..+|.. .|+..++.+||+.||.++|+++|+
T Consensus 13 ~~~~~C~~C~~~I~~~~~v~a~~~~wH~~CF~C~~C~~~L~~-~~~~~~g~~yC~~~y~~~fg~~C~ 78 (80)
T 2dj7_A 13 RGPSHCAGCKEEIKHGQSLLALDKQWHVSCFKCQTCSVILTG-EYISKDGVPYCESDYHAQFGSGPS 78 (80)
T ss_dssp SSCSCCTTTCCCCSSSCCEEETTEEECTTTCBCSSSCCBCSS-CCEEETTEEECTTHHHHHTTCCST
T ss_pred CCCCCCcCcCCeeCCCeEEEECCcccccccCCcCcCCCCcCC-CeEEECCEEECHHHHHHHcCCCCC
Confidence 456799999999987888899999999999999999999984 688999999999999999999886
No 5
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.74 E-value=4.2e-18 Score=94.22 Aligned_cols=69 Identities=26% Similarity=0.614 Sum_probs=60.4
Q ss_pred ccCCccccccccceeecCce-EEecCccccccCcccccccccCcCcceEeeCCeeeeHHHHHHHhCCCCC
Q 034188 3 FIGTQQKCKVCEKTVYPVEQ-LSADGIVYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKPHFEQLFKESGN 71 (102)
Q Consensus 3 ~~~~~~~C~~C~~~i~~~~~-~~~~~~~~h~~Cf~C~~C~~~l~~~~~~~~~~~~~C~~~~~~~~~~~c~ 71 (102)
.....++|.+|++.|.+.+. +.+.++.||..||+|..|..+|..+.|+..++.+||+.||.++|+++|.
T Consensus 7 ~~~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~f~~~C~ 76 (77)
T 1g47_A 7 NALASATCERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFPEGLFYEFEGRKYCEHDFQMLFAPCWI 76 (77)
T ss_dssp SCCCCCBCSSSCCBCCSTTTCEEETTEEECTTTCCCTTTCCCCGGGCSEEETTEEECHHHHHHHCCCC--
T ss_pred cCCCCCCchhcCCccCCCceEEEeCccEeccccCeECCCCCCCCCCCeEeECCeEeCHHHHHHHhhcccC
Confidence 34556799999999986564 7899999999999999999999988899999999999999999999885
No 6
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=99.73 E-value=9.3e-18 Score=92.72 Aligned_cols=66 Identities=33% Similarity=0.724 Sum_probs=60.7
Q ss_pred cccccccceeecCceEEecCccccccCcccccccccCcCcceEeeCCeeeeH-HHHHHHhCCCCCCC
Q 034188 8 QKCKVCEKTVYPVEQLSADGIVYHKSCFKCSHCKGTLKLSNYSSMEGVLYCK-PHFEQLFKESGNFN 73 (102)
Q Consensus 8 ~~C~~C~~~i~~~~~~~~~~~~~h~~Cf~C~~C~~~l~~~~~~~~~~~~~C~-~~~~~~~~~~c~~~ 73 (102)
++|..|++.|.+.+.+.+.++.||..||+|..|..+|..+.|+..++.+||. .||.++|+++|.-+
T Consensus 1 p~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~cy~~~f~~~C~~C 67 (76)
T 1iml_A 1 PKCPKCDKEVYFAERVTSLGKDWHRPCLKCEKCGKTLTSGGHAEHEGKPYCNHPCYSAMFGPKGFGR 67 (76)
T ss_dssp CBCTTTSSBCCGGGEEEETTEEEETTTCBCTTTCCBCCTTTEEEETTEEEETTTHHHHHSSCCCSSC
T ss_pred CcCCCCCCEEECceEEEECCccccCCCCCccccCccCCCCceECcCCeEeeCHHHHHHHhCccCCCc
Confidence 4799999999877888999999999999999999999988899999999999 69999999999833
No 7
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.72 E-value=1.6e-17 Score=90.82 Aligned_cols=66 Identities=21% Similarity=0.629 Sum_probs=60.5
Q ss_pred ccccccccceeecCc-eEEecCccccccCcccccccccCcCcceEeeCCeeeeHHHHHHHhCCCCCC
Q 034188 7 QQKCKVCEKTVYPVE-QLSADGIVYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKPHFEQLFKESGNF 72 (102)
Q Consensus 7 ~~~C~~C~~~i~~~~-~~~~~~~~~h~~Cf~C~~C~~~l~~~~~~~~~~~~~C~~~~~~~~~~~c~~ 72 (102)
+++|..|++.|.+.+ .+.+.++.||.+||+|..|.++|....|+..++.+||..||.++|+++|..
T Consensus 5 ~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~C~~ 71 (72)
T 1x4k_A 5 SSGCQECKKTIMPGTRKMEYKGSSWHETCFICHRCQQPIGTKSFIPKDNQNFCVPCYEKQHASGPSS 71 (72)
T ss_dssp CCCBSSSCCCCCSSSCEEEETTEEEETTTTCCSSSCCCCCSSSEEEETTEEEEHHHHHHHTSSCCCC
T ss_pred CCCCccCCCcccCCceEEEECcCeecccCCcccccCCccCCCccCccCCeEECHHHHhHHhCCCCCC
Confidence 468999999998765 589999999999999999999999888999999999999999999998863
No 8
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.72 E-value=1.2e-17 Score=91.27 Aligned_cols=65 Identities=31% Similarity=0.717 Sum_probs=59.8
Q ss_pred ccccccccceeecC-ceEEecCccccccCcccccccccCcCcceEeeCCeeeeHHHHHHHhCCCCC
Q 034188 7 QQKCKVCEKTVYPV-EQLSADGIVYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKPHFEQLFKESGN 71 (102)
Q Consensus 7 ~~~C~~C~~~i~~~-~~~~~~~~~~h~~Cf~C~~C~~~l~~~~~~~~~~~~~C~~~~~~~~~~~c~ 71 (102)
.++|..|++.|.+. +.+.+.++.||..||+|..|..+|....|+..++.+||..||.++|+++|.
T Consensus 5 ~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~C~ 70 (72)
T 1wyh_A 5 SSGCSACGETVMPGSRKLEYGGQTWHEHCFLCSGCEQPLGSRSFVPDKGAHYCVPCYENKFASGPS 70 (72)
T ss_dssp CCBCSSSCCBCCSSSCEECSTTCCEETTTCBCTTTCCBTTTSCEEEETTEEEEHHHHHHHTSCCCC
T ss_pred CCCCccCCCccccCccEEEECccccCcccCeECCCCCcCCCCccCCcCCeEECHHHHHHHccCcCC
Confidence 56899999999875 568899999999999999999999988889999999999999999999886
No 9
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.71 E-value=2.1e-17 Score=89.71 Aligned_cols=65 Identities=18% Similarity=0.539 Sum_probs=59.2
Q ss_pred CccccccccceeecCceEEecCccccccCcccccccccCcCcceEeeCCeeeeHHHHHHHhCCCCC
Q 034188 6 TQQKCKVCEKTVYPVEQLSADGIVYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKPHFEQLFKESGN 71 (102)
Q Consensus 6 ~~~~C~~C~~~i~~~~~~~~~~~~~h~~Cf~C~~C~~~l~~~~~~~~~~~~~C~~~~~~~~~~~c~ 71 (102)
+.++|..|++.|. .+.+.+.++.||.+||+|..|..+|....|+..++.+||..||.++|+++|.
T Consensus 4 ~~~~C~~C~~~I~-~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~C~ 68 (69)
T 2cur_A 4 GSSGCVKCNKAIT-SGGITYQDQPWHADCFVCVTCSKKLAGQRFTAVEDQYYCVDCYKNFVSGPSS 68 (69)
T ss_dssp CCCCCSSSCCCCC-TTCEEETTEEECTTTTBCTTTCCBCTTSCEEECSSCEEEHHHHHHHHTCSCC
T ss_pred CcCCCcccCCEeC-cceEEECccccccCcCEECCCCCCCCCCccEeECCEEECHHHhHHHhcCCCC
Confidence 4679999999996 4568999999999999999999999877888999999999999999999885
No 10
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=99.71 E-value=1.7e-17 Score=99.27 Aligned_cols=78 Identities=21% Similarity=0.407 Sum_probs=67.7
Q ss_pred CccccccccceeecCceEEecCccccccCcccccccccCcC--cceEeeCCeeeeHHHHHHHhCC--CCC-CCCCCCCCC
Q 034188 6 TQQKCKVCEKTVYPVEQLSADGIVYHKSCFKCSHCKGTLKL--SNYSSMEGVLYCKPHFEQLFKE--SGN-FNKNFQSPA 80 (102)
Q Consensus 6 ~~~~C~~C~~~i~~~~~~~~~~~~~h~~Cf~C~~C~~~l~~--~~~~~~~~~~~C~~~~~~~~~~--~c~-~~~~~~~~~ 80 (102)
..++|++|++.|...+.+.+.++.||..||+|..|..+|.. ..|+.+++.+||..||.++|++ +|. |.+.|.+..
T Consensus 4 ~~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~~f~~~~~C~~C~~~I~~~~ 83 (122)
T 1m3v_A 4 SWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGAGGSGGHMGSGGD 83 (122)
T ss_dssp CCCCBSSSSSCCCSSCCEEETTEEECHHHHCCSSSCCCTTTSEECCEEETTEEECHHHHHHHHCCCCSSSCSSCCSCCEE
T ss_pred CCCCCcccCCEeCCcEEEEECCceeHhhCCCcCCCCCcccccCCeEEEECCeeecHHHHHHHcCCCCccccCCCCcCchh
Confidence 46799999999987767899999999999999999999973 4689999999999999999999 898 666777665
Q ss_pred CCC
Q 034188 81 KSA 83 (102)
Q Consensus 81 ~~~ 83 (102)
+.+
T Consensus 84 ~~~ 86 (122)
T 1m3v_A 84 VMV 86 (122)
T ss_dssp SSS
T ss_pred eEE
Confidence 543
No 11
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.71 E-value=1.8e-17 Score=90.10 Aligned_cols=65 Identities=22% Similarity=0.566 Sum_probs=59.2
Q ss_pred CccccccccceeecCceEEecCccccccCcccccccccCcCcceEeeCCeeeeHHHHHHHhCCCCC
Q 034188 6 TQQKCKVCEKTVYPVEQLSADGIVYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKPHFEQLFKESGN 71 (102)
Q Consensus 6 ~~~~C~~C~~~i~~~~~~~~~~~~~h~~Cf~C~~C~~~l~~~~~~~~~~~~~C~~~~~~~~~~~c~ 71 (102)
..++|..|++.|.. +.+.+.++.||++||+|..|.++|....|+..++.+||..||.++|+++|.
T Consensus 4 ~~~~C~~C~~~I~~-~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~c~ 68 (70)
T 2d8z_A 4 GSSGCVQCKKPITT-GGVTYREQPWHKECFVCTACRKQLSGQRFTARDDFAYCLNCFCDLYASGPS 68 (70)
T ss_dssp CCCBCSSSCCBCCS-SEEESSSSEEETTTSBCSSSCCBCTTSCCEESSSSEECHHHHHHHTCCCCT
T ss_pred CCCCCcccCCeecc-ceEEECccccCCCCCccCCCCCcCCcCceEeeCCeEECHHHHHHHhccccC
Confidence 45799999999964 568999999999999999999999877888999999999999999999885
No 12
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=99.70 E-value=1.4e-17 Score=98.63 Aligned_cols=70 Identities=20% Similarity=0.393 Sum_probs=62.4
Q ss_pred CCccccccccceeecCceEEecCccccccCcccccccccCcC--cceEeeCCeeeeHHHHHHHhCCCCCCCC
Q 034188 5 GTQQKCKVCEKTVYPVEQLSADGIVYHKSCFKCSHCKGTLKL--SNYSSMEGVLYCKPHFEQLFKESGNFNK 74 (102)
Q Consensus 5 ~~~~~C~~C~~~i~~~~~~~~~~~~~h~~Cf~C~~C~~~l~~--~~~~~~~~~~~C~~~~~~~~~~~c~~~~ 74 (102)
++.++|++|++.|...+.+.+.++.||..||+|..|..+|.. ..|+.+++.+||+.||.++|+++|.++.
T Consensus 1 g~~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~~y~~~f~~~c~~c~ 72 (114)
T 1j2o_A 1 GSLLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLGGSGGHMGS 72 (114)
T ss_dssp CCCBCBSSSCSCBCSSEEEECSSSEECTTTCCCSSSCSCCCCSSSCCCCBTTBCCCHHHHHHHHTSCCSSCB
T ss_pred CcCCCCcCCCCeeCCcEEEEECchhHHHhcCcccccCCchhcCCCeeEEECCeeechHHHHHHhCcccCcCC
Confidence 356799999999987767899999999999999999999985 4688999999999999999999987553
No 13
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=99.70 E-value=1.6e-17 Score=89.39 Aligned_cols=62 Identities=24% Similarity=0.567 Sum_probs=57.1
Q ss_pred ccccccccceeecCceEEecCccccccCcccccccccCcCcceEeeCCeeeeHHHHHHHhCCC
Q 034188 7 QQKCKVCEKTVYPVEQLSADGIVYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKPHFEQLFKES 69 (102)
Q Consensus 7 ~~~C~~C~~~i~~~~~~~~~~~~~h~~Cf~C~~C~~~l~~~~~~~~~~~~~C~~~~~~~~~~~ 69 (102)
+++|++|++.|. .+.+.+.++.||.+||+|..|..+|....|+..++.+||..||.++|+++
T Consensus 5 ~~~C~~C~~~I~-~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~f~~k 66 (66)
T 1nyp_A 5 VPICGACRRPIE-GRVVNAMGKQWHVEHFVCAKCEKPFLGHRHYERKGLAYCETHYNQLFGDV 66 (66)
T ss_dssp CCEETTTTEECC-SCEECCTTSBEETTTCBCTTTCCBCSSSCCEEETTEEECHHHHHHHCSCC
T ss_pred CCCCcccCCEec-ceEEEECccccccCcCEECCCCCCCCCCceEeECCcEECHHHHHHHhCCC
Confidence 568999999997 66788999999999999999999998878999999999999999999875
No 14
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.70 E-value=3e-17 Score=93.44 Aligned_cols=67 Identities=27% Similarity=0.591 Sum_probs=60.3
Q ss_pred CCccccccccceeecCceEEecCccccccCcccccccccCcCcceEeeCCeeeeHHHHHHHhCCCCCC
Q 034188 5 GTQQKCKVCEKTVYPVEQLSADGIVYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKPHFEQLFKESGNF 72 (102)
Q Consensus 5 ~~~~~C~~C~~~i~~~~~~~~~~~~~h~~Cf~C~~C~~~l~~~~~~~~~~~~~C~~~~~~~~~~~c~~ 72 (102)
...++|..|++.|. .+.+.+.++.||++||+|..|.++|....|+..++.+||..||.++|+++|+.
T Consensus 23 ~~~~~C~~C~~~I~-~~~v~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~f~~~c~s 89 (90)
T 2dar_A 23 KRTPMCAHCNQVIR-GPFLVALGKSWHPEEFNCAHCKNTMAYIGFVEEKGALYCELCYEKFFASGPSS 89 (90)
T ss_dssp TCCCBBSSSCCBCC-SCEEEETTEEECTTTCBCSSSCCBCSSSCBEESSSCEECHHHHHHHTSCCCCC
T ss_pred CCCCCCccCCCEec-ceEEEECCccccccCCccCCCCCCCCCCEeEeECCEEECHHHHHHHcCCCCCC
Confidence 34578999999994 56788999999999999999999999878888999999999999999999863
No 15
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=99.70 E-value=3.6e-17 Score=94.73 Aligned_cols=75 Identities=15% Similarity=0.373 Sum_probs=65.6
Q ss_pred CCccccccccceeec-CceEEecCccccccCcccccccccCcCcceEeeCCeeeeHHHHHHHhCCCCC-CCCCCCCC
Q 034188 5 GTQQKCKVCEKTVYP-VEQLSADGIVYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKPHFEQLFKESGN-FNKNFQSP 79 (102)
Q Consensus 5 ~~~~~C~~C~~~i~~-~~~~~~~~~~~h~~Cf~C~~C~~~l~~~~~~~~~~~~~C~~~~~~~~~~~c~-~~~~~~~~ 79 (102)
.+.++|..|++.|.. .+.+.+.++.||..||+|..|.++|....|+..++++||..||.++|+++|. |.+.|.++
T Consensus 3 ~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~~~C~~C~~~I~~~ 79 (101)
T 2cup_A 3 SGSSGCVECRKPIGADSKEVHYKNRFWHDTCFRCAKCLHPLANETFVAKDNKILCNKCTTREDSPKCKGCFKAIVAG 79 (101)
T ss_dssp SCCCBCSSSCCBCCSSSCEEEETTEEEETTTCCCSSSCCCTTSSCCEEETTEEECHHHHTTCCCCBCSSSCCBCCSS
T ss_pred CCCCcCcccCCcccCCceEEEECccChhhcCCcccccCCCCCcCeeECcCCEEEChhHhhhhcCCccccCCCccccC
Confidence 346799999999975 5668999999999999999999999877799999999999999999999998 66666643
No 16
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.69 E-value=1.7e-17 Score=91.70 Aligned_cols=67 Identities=15% Similarity=0.413 Sum_probs=60.5
Q ss_pred ccccccccceeec---CceEEecCccccccCcccccccccCcCcceEeeCCeeeeHHHHHHHhCCCCCCC
Q 034188 7 QQKCKVCEKTVYP---VEQLSADGIVYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKPHFEQLFKESGNFN 73 (102)
Q Consensus 7 ~~~C~~C~~~i~~---~~~~~~~~~~~h~~Cf~C~~C~~~l~~~~~~~~~~~~~C~~~~~~~~~~~c~~~ 73 (102)
+++|..|++.|.+ .+.+.+.++.||.+||+|..|..+|....|+..++++||..||.++|+++|.-+
T Consensus 5 ~~~C~~C~~~I~~~g~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~f~~~C~~~ 74 (76)
T 1x68_A 5 SSGCVACSKPISGLTGAKFICFQDSQWHSECFNCGKCSVSLVGKGFLTQNKEIFCQKCGSGMDTDISGPS 74 (76)
T ss_dssp CCCCTTTCCCCCTTTTCCEEEETTEEEEGGGCBCTTTCCBCSSSCEEEETTEEEETTTTCCCCCCSSSSS
T ss_pred CCCCccCCCcccCCCCceeEEECCcccCcccCChhhCCCcCCCCceEeECCEEECHHHhhhhhCCcCCCC
Confidence 5689999999974 356899999999999999999999987779999999999999999999999754
No 17
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.69 E-value=6.7e-17 Score=87.89 Aligned_cols=66 Identities=18% Similarity=0.446 Sum_probs=59.2
Q ss_pred CCccccccccceeecCceEEecCccccccCcccccccccCcCcceEeeCCeeeeHHHHHHHhCCCCC
Q 034188 5 GTQQKCKVCEKTVYPVEQLSADGIVYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKPHFEQLFKESGN 71 (102)
Q Consensus 5 ~~~~~C~~C~~~i~~~~~~~~~~~~~h~~Cf~C~~C~~~l~~~~~~~~~~~~~C~~~~~~~~~~~c~ 71 (102)
++.++|..|++.|. .+.+.+.++.||++||+|..|..+|....|+..++.+||..||.++|+++..
T Consensus 3 ~~~~~C~~C~~~I~-~~~~~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~~~~~~ 68 (70)
T 2d8x_A 3 SGSSGCHQCGEFII-GRVIKAMNNSWHPECFRCDLCQEVLADIGFVKNAGRHLCRPCHNREKASGPS 68 (70)
T ss_dssp CCSSBCSSSCCBCC-SCCEEETTEEECTTTSBCSSSCCBCSSSCCEEETTEEECHHHHHHHHCCCSC
T ss_pred CCCCcCccCCCEec-ceEEEECcccccccCCEeCCCCCcCCCCccEeECCeEECHHHhhhhcCCCCC
Confidence 45679999999997 4568999999999999999999999988888899999999999999988653
No 18
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=99.69 E-value=4.7e-17 Score=92.43 Aligned_cols=65 Identities=26% Similarity=0.522 Sum_probs=58.8
Q ss_pred CccccccccceeecCceEEecCccccccCcccccccccCcCcceEeeCCeeeeHHHHHHHhCCCCC
Q 034188 6 TQQKCKVCEKTVYPVEQLSADGIVYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKPHFEQLFKESGN 71 (102)
Q Consensus 6 ~~~~C~~C~~~i~~~~~~~~~~~~~h~~Cf~C~~C~~~l~~~~~~~~~~~~~C~~~~~~~~~~~c~ 71 (102)
...+|..|++.|.. +.+.+.++.||.+||+|..|..+|....|+..++.+||+.||.++|++++.
T Consensus 24 ~~~~C~~C~~~I~~-~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~f~p~~~ 88 (89)
T 1x64_A 24 RMPLCDKCGSGIVG-AVVKARDKYRHPECFVCADCNLNLKQKGYFFVEGELYCETHARARTSGPSS 88 (89)
T ss_dssp SCCBCTTTCCBCCS-CCEESSSCEECTTTCCCSSSCCCTTTSCCEEETTEEECHHHHHHHSSSCCC
T ss_pred cCCCcccCCCEecc-cEEEECCceECccCCEecCCCCCCCCCCeEeECCEEECHHHHHHHhCCCCC
Confidence 34689999999975 568899999999999999999999887899999999999999999999764
No 19
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=99.69 E-value=7.5e-17 Score=96.77 Aligned_cols=72 Identities=18% Similarity=0.404 Sum_probs=65.3
Q ss_pred ccccccccceeecCceEEecCccccccCcccccccccCcCcceEeeCCeeeeHHHHHHHhCCCCC-CCCCCCC
Q 034188 7 QQKCKVCEKTVYPVEQLSADGIVYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKPHFEQLFKESGN-FNKNFQS 78 (102)
Q Consensus 7 ~~~C~~C~~~i~~~~~~~~~~~~~h~~Cf~C~~C~~~l~~~~~~~~~~~~~C~~~~~~~~~~~c~-~~~~~~~ 78 (102)
+++|.+|++.|.+.+.+.+.++.||.+||+|..|..+|....|+..++.+||..||.++|+++|. |.+.|.+
T Consensus 3 ~~~C~~C~~~I~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~~~~C~~C~~~I~~ 75 (126)
T 2xqn_T 3 KPRCAGCDELIFSNEYTQAENQNWHLKHFCCFDCDSILAGEIYVMVNDKPVCKPCYVKNHAVVCQGCHNAIDP 75 (126)
T ss_dssp CCBBTTTSSBCCSSCEEEETTEEECGGGSBCTTTCCBCTTSEEEEETTEEEEHHHHHHHSCCBCTTTCSBCCT
T ss_pred CCCCccCCCEeCCceEEeeCCCCccCCCCCcCCCCCCCCcCEEEeECCEEechHHhCcCcCccCcccCCcCCc
Confidence 57899999999877778999999999999999999999877788999999999999999999998 6666664
No 20
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.69 E-value=7.2e-17 Score=90.24 Aligned_cols=66 Identities=30% Similarity=0.622 Sum_probs=60.2
Q ss_pred ccccccccceeecCce-EEecCccccccCcccccccccCcCcceEeeCCeeeeHHHHHHHhCCCCCC
Q 034188 7 QQKCKVCEKTVYPVEQ-LSADGIVYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKPHFEQLFKESGNF 72 (102)
Q Consensus 7 ~~~C~~C~~~i~~~~~-~~~~~~~~h~~Cf~C~~C~~~l~~~~~~~~~~~~~C~~~~~~~~~~~c~~ 72 (102)
+++|.+|++.|.+.+. +.+.++.||.+||+|..|.++|..+.|+..++.+||..||.++|+++++.
T Consensus 15 ~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~~~~ 81 (82)
T 1x63_A 15 SPKCKGCFKAIVAGDQNVEYKGTVWHKDCFTCSNCKQVIGTGSFFPKGEDFYCVTCHETKFASGPSS 81 (82)
T ss_dssp SCBCSSSCCBCCSSSCEEECSSCEEETTTCCCSSSCCCCTTSCEEEETTEEEEHHHHHHHTSCCCSC
T ss_pred CCcCccCCcccccCceEEEECccccccccCchhhCCCccCCCccEeeCCEEECHHHHHHHhCCCCCC
Confidence 4699999999987665 78999999999999999999999888999999999999999999998763
No 21
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.68 E-value=4.3e-17 Score=89.11 Aligned_cols=66 Identities=17% Similarity=0.395 Sum_probs=58.5
Q ss_pred CCccccccccceeec---CceEEecCccccccCcccccccccCcCcceEeeCCeeeeHHHHHHHhCCCC
Q 034188 5 GTQQKCKVCEKTVYP---VEQLSADGIVYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKPHFEQLFKESG 70 (102)
Q Consensus 5 ~~~~~C~~C~~~i~~---~~~~~~~~~~~h~~Cf~C~~C~~~l~~~~~~~~~~~~~C~~~~~~~~~~~c 70 (102)
.++++|..|++.|.. .+.+.+.++.||.+||+|..|..+|....|+..++++||..||.++|++++
T Consensus 3 ~~~~~C~~C~~~I~~~~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~~p~~ 71 (72)
T 1x4l_A 3 SGSSGCAGCTNPISGLGGTKYISFEERQWHNDCFNCKKCSLSLVGRGFLTERDDILCPDCGKDISGPSS 71 (72)
T ss_dssp SCSCSBTTTTBCCCCSSSCSCEECSSCEECTTTCBCSSSCCBCTTSCCEECSSSEECHHHHHTCCCSSC
T ss_pred CCCCCCcCCCccccCCCCcceEEECCcccCcccCEeccCCCcCCCCccEeECCEEEChhHcCcccCCCC
Confidence 346799999999975 245889999999999999999999987778889999999999999998865
No 22
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.68 E-value=6.1e-17 Score=90.12 Aligned_cols=64 Identities=25% Similarity=0.612 Sum_probs=59.2
Q ss_pred ccccccccceeecCceEEecCccccccCcccccccccCcCcceEeeCCeeeeHHHHHHHhCCCCC
Q 034188 7 QQKCKVCEKTVYPVEQLSADGIVYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKPHFEQLFKESGN 71 (102)
Q Consensus 7 ~~~C~~C~~~i~~~~~~~~~~~~~h~~Cf~C~~C~~~l~~~~~~~~~~~~~C~~~~~~~~~~~c~ 71 (102)
+++|++|++.|.+ +.+.+.++.||..||+|..|..+|..+.++..++++||+.||.++|+++|.
T Consensus 15 ~~~C~~C~~~I~~-~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~~y~~~f~~~C~ 78 (80)
T 1x3h_A 15 SPKCGGCNRPVLE-NYLSAMDTVWHPECFVCGDCFTSFSTGSFFELDGRPFCELHYHHRRGSGPS 78 (80)
T ss_dssp SCBCTTTCCBCCS-SCEEETTEEECTTTCBCSSSCCBSCSSCCEESSSCEECHHHHHHHHSSSCC
T ss_pred CCccccCCCeecc-eeEEECCCeEecCcCChhhCCCCCCCCcEEeECCEEECHHHHHHHcCCCCC
Confidence 4689999999975 568999999999999999999999887899999999999999999999885
No 23
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.68 E-value=2.5e-17 Score=91.63 Aligned_cols=66 Identities=18% Similarity=0.402 Sum_probs=59.2
Q ss_pred CCccccccccceeecCceEEecCccccccCcccccccccCcCcceEeeCCeeeeHHHHHHHhCCCCC
Q 034188 5 GTQQKCKVCEKTVYPVEQLSADGIVYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKPHFEQLFKESGN 71 (102)
Q Consensus 5 ~~~~~C~~C~~~i~~~~~~~~~~~~~h~~Cf~C~~C~~~l~~~~~~~~~~~~~C~~~~~~~~~~~c~ 71 (102)
++.++|..|++.|.. +.+.+.++.||.+||+|..|..+|....|+..++.+||..||.++|++++.
T Consensus 13 ~~~~~C~~C~~~I~~-~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~p~g~ 78 (79)
T 1x62_A 13 QKLPMCDKCGTGIVG-VFVKLRDRHRHPECYVCTDCGTNLKQKGHFFVEDQIYCEKHARERVSGPSS 78 (79)
T ss_dssp CCCCCCSSSCCCCCS-SCEECSSCEECTTTTSCSSSCCCHHHHCCEESSSCEECHHHHHHHHSSCCC
T ss_pred CCCCccccCCCCccC-cEEEECcceeCcCcCeeCCCCCCCCCCCeEeECCEEECHHHHHHHhCCCCC
Confidence 345799999999975 578999999999999999999999877799999999999999999999764
No 24
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=99.67 E-value=4.6e-16 Score=99.43 Aligned_cols=71 Identities=34% Similarity=0.729 Sum_probs=66.1
Q ss_pred CCccCCccccccccceeecCceEEecCccccccCcccccccccCcCcceEeeCCeeeeHHHHHHHhCCCCC
Q 034188 1 MSFIGTQQKCKVCEKTVYPVEQLSADGIVYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKPHFEQLFKESGN 71 (102)
Q Consensus 1 ~~~~~~~~~C~~C~~~i~~~~~~~~~~~~~h~~Cf~C~~C~~~l~~~~~~~~~~~~~C~~~~~~~~~~~c~ 71 (102)
|+..++.++|..|++.|.+.+.+.+.++.||..||+|..|..+|....|+.+++.+||+.||.++|+++|.
T Consensus 1 m~~~~~~~~C~~C~~~I~~~~~v~a~g~~wH~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~f~~~c~ 71 (192)
T 1b8t_A 1 MPNWGGGKKCGVCQKAVYFAEEVQCEGSSFHKSCFLCMVCKKNLDSTTVAVHGDEIYCKSCYGKKYGPKGK 71 (192)
T ss_dssp CCCCCCCEECTTTCCEECSSCCEEETTEEECTTTCBCTTTCCBCCSSSEEEETTEEEEHHHHHHHHSCCCC
T ss_pred CCCCCCCCcCccCCCeecceeEEEeCCceecCCCCcCcccCCcCCCCeeEecCCEeeChhhhHhhcCcccc
Confidence 66778889999999999877888899999999999999999999988899999999999999999999986
No 25
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.66 E-value=1.7e-16 Score=88.60 Aligned_cols=66 Identities=26% Similarity=0.556 Sum_probs=58.1
Q ss_pred CCccccccccceeecCceEEecCccccccCcccccccccCcCcceEee-CCeeeeHHHHHHHhCCCCC
Q 034188 5 GTQQKCKVCEKTVYPVEQLSADGIVYHKSCFKCSHCKGTLKLSNYSSM-EGVLYCKPHFEQLFKESGN 71 (102)
Q Consensus 5 ~~~~~C~~C~~~i~~~~~~~~~~~~~h~~Cf~C~~C~~~l~~~~~~~~-~~~~~C~~~~~~~~~~~c~ 71 (102)
...++|+.|++.|. .+.+.+.++.||+.||+|..|..+|....|... ++.+||..||.++|+++|.
T Consensus 13 ~~~~~C~~C~~~I~-~~~~~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~~g~~yC~~cy~~~f~~~C~ 79 (81)
T 2dlo_A 13 ATLEKCATCSQPIL-DRILRAMGKAYHPGCFTCVVCHRGLDGIPFTVDATSQIHCIEDFHRKFASGPS 79 (81)
T ss_dssp SSCCBCTTTCCBCC-SCCEEETTEEECTTTCBCSSSCCBCTTSCEECCTTCCCEEHHHHHHHTTSSSC
T ss_pred cCCCccccCCCeec-ceeEEECCccccHHhcCcccCCCccCCCeeEECCCCEEECHHHHHHHhcCcCC
Confidence 45679999999997 456899999999999999999999986666665 7899999999999999885
No 26
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.65 E-value=2e-16 Score=88.02 Aligned_cols=65 Identities=23% Similarity=0.556 Sum_probs=59.1
Q ss_pred ccccccccceeecCceEEecCccccccCcccccccccCcCcceEeeCCeeeeHHHHHHHhCCCCCC
Q 034188 7 QQKCKVCEKTVYPVEQLSADGIVYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKPHFEQLFKESGNF 72 (102)
Q Consensus 7 ~~~C~~C~~~i~~~~~~~~~~~~~h~~Cf~C~~C~~~l~~~~~~~~~~~~~C~~~~~~~~~~~c~~ 72 (102)
+++|..|++.|.+ +.+.+.++.||..||+|..|.++|....|+..++.+||..||.++|+++|+.
T Consensus 15 ~~~C~~C~~~I~~-~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~c~s 79 (80)
T 2cuq_A 15 APRCARCSKTLTQ-GGVTYRDQPWHRECLVCTGCQTPLAGQQFTSRDEDPYCVACFGELFASGPSS 79 (80)
T ss_dssp SCCCTTTCCCCCS-CCEESSSSEECTTTCBCSSSCCBCTTCCEEECSSSEEEHHHHHHHTTCSTTC
T ss_pred CCcCCCCCCEecC-cEEEECCchhhhhhCCcccCCCcCCCCeeEeECCEEECHHHHHHHcCCCCCC
Confidence 5789999999965 5689999999999999999999998778889999999999999999998863
No 27
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=99.65 E-value=2.7e-16 Score=85.66 Aligned_cols=62 Identities=29% Similarity=0.766 Sum_probs=56.3
Q ss_pred CccccccccceeecCce-EEecCccccccCcccccccccCcCcceEeeCCeeeeHHHHHHHhC
Q 034188 6 TQQKCKVCEKTVYPVEQ-LSADGIVYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKPHFEQLFK 67 (102)
Q Consensus 6 ~~~~C~~C~~~i~~~~~-~~~~~~~~h~~Cf~C~~C~~~l~~~~~~~~~~~~~C~~~~~~~~~ 67 (102)
..++|++|++.|...+. +.+.++.||..||+|..|+.+|..+.++..++++||+.||.++|+
T Consensus 10 ~~~~C~~C~~~i~~~e~~~~~~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~lf~ 72 (72)
T 3f6q_B 10 ASATCERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFPEGLFYEFEGRKYCEHDFQMLFA 72 (72)
T ss_dssp TTCBCTTTCCBCCTTCEEEEETTEEEETTTSSCTTTCCCCGGGCCEEETTEEECHHHHHHHTC
T ss_pred CCccchhcCccccCCceEEEeCcCeeCcCCCcccCCCCCCCCCCeEeECCeEeCHHHHHHhhC
Confidence 45699999999987775 689999999999999999999998888999999999999999875
No 28
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.65 E-value=3.2e-17 Score=91.90 Aligned_cols=66 Identities=32% Similarity=0.770 Sum_probs=57.9
Q ss_pred cCCccccccccceeecCceEEecCccccccCcccccccccCcCcceE--eeCCeeeeHHHHHHHhCCC
Q 034188 4 IGTQQKCKVCEKTVYPVEQLSADGIVYHKSCFKCSHCKGTLKLSNYS--SMEGVLYCKPHFEQLFKES 69 (102)
Q Consensus 4 ~~~~~~C~~C~~~i~~~~~~~~~~~~~h~~Cf~C~~C~~~l~~~~~~--~~~~~~~C~~~~~~~~~~~ 69 (102)
.++.++|.+|++.|++.+.+.++++.||..||+|..|..+|....|+ .+++++||+.||.++|+..
T Consensus 12 ~~~~~~C~~C~~~I~~~e~v~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~~~ 79 (82)
T 2co8_A 12 AGAGDLCALCGEHLYVLERLCVNGHFFHRSCFRCHTCEATLWPGGYEQHPGDGHFYCLQHLPQTDSGP 79 (82)
T ss_dssp CCSSCBCSSSCCBCCTTTBCCBTTBCCBTTTCBCSSSCCBCCTTSEECCTTTCCCEETTTCCCCCCCC
T ss_pred CCCCCCCcccCCCcccceEEEECCCeeCCCcCEEcCCCCCcCCCceeEeCcCCEEEChHHHHhhhcCC
Confidence 35667999999999888888899999999999999999999988777 3699999999998877653
No 29
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.64 E-value=3.4e-16 Score=87.12 Aligned_cols=65 Identities=22% Similarity=0.462 Sum_probs=56.9
Q ss_pred CCccccccccceeecCceEEecCccccccCcccccccccCcCcceEeeCCeeeeHHHHHHHhCCCCC
Q 034188 5 GTQQKCKVCEKTVYPVEQLSADGIVYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKPHFEQLFKESGN 71 (102)
Q Consensus 5 ~~~~~C~~C~~~i~~~~~~~~~~~~~h~~Cf~C~~C~~~l~~~~~~~~~~~~~C~~~~~~~~~~~c~ 71 (102)
.+.++|..|++.|. .+.+.+.++.||.+||+|..|..+|... ++..++.+||..||.++|++.++
T Consensus 13 ~~~~~C~~C~~~I~-~~~v~a~~~~~H~~CF~C~~C~~~L~~~-~f~~~g~~yC~~cy~~~f~p~~s 77 (79)
T 2cor_A 13 LGKYICQKCHAIID-EQPLIFKNDPYHPDHFNCANCGKELTAD-ARELKGELYCLPCHDKMGVSGPS 77 (79)
T ss_dssp CCCCBCTTTCCBCC-SCCCCCSSSCCCTTTSBCSSSCCBCCTT-CEEETTEEECHHHHHTTSCCSSC
T ss_pred cCCCCCccCCCEec-ceEEEECcceeCCCCCEeCCCCCccCCC-CEeECCEEeCHHHHHHhCCCCCC
Confidence 44679999999997 5568899999999999999999999866 45889999999999999988553
No 30
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.63 E-value=5.8e-16 Score=84.54 Aligned_cols=63 Identities=24% Similarity=0.529 Sum_probs=56.4
Q ss_pred CccccccccceeecCc-eEEecCccccccCcccccccccCcCcceEeeCCeeeeHHHHHHHhCC
Q 034188 6 TQQKCKVCEKTVYPVE-QLSADGIVYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKPHFEQLFKE 68 (102)
Q Consensus 6 ~~~~C~~C~~~i~~~~-~~~~~~~~~h~~Cf~C~~C~~~l~~~~~~~~~~~~~C~~~~~~~~~~ 68 (102)
+.++|.+|++.|...+ .+.+.++.||..||+|..|..+|....|+..++.+||..||.++|+.
T Consensus 4 ~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~~~~ 67 (72)
T 1x61_A 4 GSSGCGGCGEDVVGDGAGVVALDRVFHVGCFVCSTCRAQLRGQHFYAVERRAYCEGCYVATLES 67 (72)
T ss_dssp CCCCCSSSCSCCCSSSCCEECSSSEECTTTCBCSSSCCBCTTSCEEESSSCEEEHHHHHHHHHT
T ss_pred CCCCCccCCCccCCCceEEEECCCeEcccCCcccccCCcCCcCcCEeeCCeEECHHHHHHHHcc
Confidence 4579999999998654 58999999999999999999999876799999999999999999864
No 31
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=1.1e-16 Score=89.44 Aligned_cols=65 Identities=18% Similarity=0.552 Sum_probs=58.3
Q ss_pred ccccccccceeec-CceEEecCccccccCcccccccccCcCcceEeeCCeeeeHHHHHHHhCCCCC
Q 034188 7 QQKCKVCEKTVYP-VEQLSADGIVYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKPHFEQLFKESGN 71 (102)
Q Consensus 7 ~~~C~~C~~~i~~-~~~~~~~~~~~h~~Cf~C~~C~~~l~~~~~~~~~~~~~C~~~~~~~~~~~c~ 71 (102)
+++|+.|++.|.+ ...+.+.++.||..||+|..|.++|....|+..++.+||..||.++|+++|.
T Consensus 15 ~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~~~~~C~~c~~~~~~~~C~ 80 (82)
T 2ehe_A 15 ANTCAECQQLIGHDSRELFYEDRHFHEGCFRCCRCQRSLADEPFTCQDSELLCNDCYCSAFSSGPS 80 (82)
T ss_dssp SCBCTTTCCBCCSSCCBCCCSSCCCBTTTSBCTTTCCBCSSCCEEEETTEEEETTTSSCCGGGSSC
T ss_pred CCcCccCCCccccCcEEEEeCCccccccCCeecCCCCccCCCccEeeCCEEECHHHHhhhcCCCCC
Confidence 4689999999974 3457889999999999999999999977888999999999999999999875
No 32
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=99.62 E-value=2e-15 Score=96.40 Aligned_cols=69 Identities=30% Similarity=0.714 Sum_probs=62.6
Q ss_pred CCccccccccceeecCceEEecCccccccCcccccccccCcCcceEeeCCeeeeHHHHHHHhCCCCCCC
Q 034188 5 GTQQKCKVCEKTVYPVEQLSADGIVYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKPHFEQLFKESGNFN 73 (102)
Q Consensus 5 ~~~~~C~~C~~~i~~~~~~~~~~~~~h~~Cf~C~~C~~~l~~~~~~~~~~~~~C~~~~~~~~~~~c~~~ 73 (102)
++.++|..|++.|.+.+.+.+.++.||.+||+|..|..+|....|+..++++||+.||.++|+++|.-+
T Consensus 113 ~~~~~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~f~~kc~~C 181 (192)
T 1b8t_A 113 GGSDGCPRCGQAVYAAEKVIGAGKSWHKSCFRCAKCGKSLESTTLADKDGEIYCKGCYAKNFGPKGFGF 181 (192)
T ss_dssp CCCEECTTTSCEECSSSCEEETTEEECTTTCBCTTTCCBCCSSSEEEETTEEEEHHHHHHHTCCCCCCC
T ss_pred CCCCcCCCCCCEecCcEEEecCCCccchhcCCccccCCCCCCCcccccCCEEeCHHHHHHhcCCcCCCC
Confidence 345689999999987778889999999999999999999988789999999999999999999999843
No 33
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=99.62 E-value=1.5e-15 Score=96.36 Aligned_cols=74 Identities=23% Similarity=0.380 Sum_probs=64.1
Q ss_pred CCccccccccceeecCceEEecCccccccCcccccccccCcCcceEeeCCeeeeHHHHHHHhCCCCC-CCCCCCCC
Q 034188 5 GTQQKCKVCEKTVYPVEQLSADGIVYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKPHFEQLFKESGN-FNKNFQSP 79 (102)
Q Consensus 5 ~~~~~C~~C~~~i~~~~~~~~~~~~~h~~Cf~C~~C~~~l~~~~~~~~~~~~~C~~~~~~~~~~~c~-~~~~~~~~ 79 (102)
.+.++|..|++.|...+.+.+.++.||..||+|..|..+|.... +.+++.+||..||.++|+++|. |.+.|.+.
T Consensus 58 ~~~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~-f~~~g~~yC~~~y~~~f~~kC~~C~~~I~~~ 132 (182)
T 2jtn_A 58 PEIPMCAGCDQHILDRFILKALDRHWHSKCLKCSDCHVPLAERC-FSRGESVYCKDDFFKRFGTKCAACQLGIPPT 132 (182)
T ss_dssp CSCCBCBTSSSBCCCSEEEEETTEEECSSTTSCTTTCCCCSSCC-EEETTEEECHHHHHHTTSCCCTTTCCCCCSS
T ss_pred CCCCcCccCCCCccCceeEEecCCeEccccCccCCCCCccCCCc-eeECCEeeecCccccccccccccCCCccCCC
Confidence 44579999999998766678999999999999999999998765 5789999999999999999998 66566553
No 34
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=99.62 E-value=1e-15 Score=92.25 Aligned_cols=72 Identities=19% Similarity=0.379 Sum_probs=62.8
Q ss_pred ccccccccceeecCceEEecCccccccCcccccccccCcC--cceEeeCCeeeeHHHHHHHhCC--CCC-CCCCCCC
Q 034188 7 QQKCKVCEKTVYPVEQLSADGIVYHKSCFKCSHCKGTLKL--SNYSSMEGVLYCKPHFEQLFKE--SGN-FNKNFQS 78 (102)
Q Consensus 7 ~~~C~~C~~~i~~~~~~~~~~~~~h~~Cf~C~~C~~~l~~--~~~~~~~~~~~C~~~~~~~~~~--~c~-~~~~~~~ 78 (102)
.++|..|++.|.+.+.+.+.++.||.+||+|..|..+|.. ..|+..++.+||..||.++|++ +|. |.+.|.+
T Consensus 2 ~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~~~~~C~~C~~~I~~ 78 (131)
T 2xjy_A 2 LLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRA 78 (131)
T ss_dssp CCBBTTTCCBCCSSEEEEETTEEEETTTCBCTTTCCBCSSTTCCEEEETTEEECHHHHHHHHCCCEECTTTCCEECT
T ss_pred cccCcCCCCEeCCcEEEEECCCcccHHHcccCcCCCccccCCCeEEEECCEEeecCchhhhCCCccChhhcCCccCc
Confidence 4689999999987656899999999999999999999964 4688999999999999999999 888 5555554
No 35
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=99.62 E-value=8.1e-16 Score=96.53 Aligned_cols=74 Identities=23% Similarity=0.380 Sum_probs=62.5
Q ss_pred CCccccccccceeecCceEEecCccccccCcccccccccCcCcceEeeCCeeeeHHHHHHHhCCCCC-CCCCCCCC
Q 034188 5 GTQQKCKVCEKTVYPVEQLSADGIVYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKPHFEQLFKESGN-FNKNFQSP 79 (102)
Q Consensus 5 ~~~~~C~~C~~~i~~~~~~~~~~~~~h~~Cf~C~~C~~~l~~~~~~~~~~~~~C~~~~~~~~~~~c~-~~~~~~~~ 79 (102)
++.++|..|++.|.+.+.+.+.++.||..||+|..|..+|.... +.+++.+||..||.++|+++|. |.+.|.+.
T Consensus 4 ~~~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~-f~~~g~~yC~~~y~~~f~~~C~~C~~~I~~~ 78 (169)
T 2rgt_A 4 PEIPMCAGCDQHILDRFILKALDRHWHSKCLKCSDCHVPLAERC-FSRGESVYCKDDFFKRFGTKCAACQLGIPPT 78 (169)
T ss_dssp ---CBBSSSSSBCCSSSCEECSSCEECTTTSBCTTTCCBCCSCC-EESSSCEECHHHHHHHHSCBCTTTCCBCCTT
T ss_pred CCCCccccCCCccCCcEEEEECCcEEccccCccCCCCCcCCCCC-cccCCeeeecccccccccccccccccccCCC
Confidence 45679999999998766788999999999999999999998765 5789999999999999999998 65556543
No 36
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=99.60 E-value=6.7e-16 Score=92.54 Aligned_cols=61 Identities=25% Similarity=0.549 Sum_probs=55.0
Q ss_pred ccccccccceeecCceEEecCccccccCcccccccccCcC--cceEeeCCeeeeHHHHHHHhC
Q 034188 7 QQKCKVCEKTVYPVEQLSADGIVYHKSCFKCSHCKGTLKL--SNYSSMEGVLYCKPHFEQLFK 67 (102)
Q Consensus 7 ~~~C~~C~~~i~~~~~~~~~~~~~h~~Cf~C~~C~~~l~~--~~~~~~~~~~~C~~~~~~~~~ 67 (102)
+++|.+|++.|...+.+.+.++.||..||+|..|..+|.. ..|+.+++.+||+.||.++|+
T Consensus 61 ~~~C~~C~~~I~~~~~v~a~~~~wH~~CF~C~~C~~~L~~~g~~f~~~dg~~yC~~cy~~~Fg 123 (123)
T 2l4z_A 61 WKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFG 123 (123)
T ss_dssp CSBBSSSSSBCCSSSEEEETTEEEETTTSBCTTTCCBGGGTTCCCBCSSSCCBCHHHHHHHCC
T ss_pred CCcCcCCCCCcCCcEEEEeCCcEEcccccCcCcCCCcccccCCceEEECCEEeCHHHhhhhcC
Confidence 4689999999987767899999999999999999999973 468889999999999999885
No 37
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.57 E-value=2.6e-15 Score=83.69 Aligned_cols=64 Identities=22% Similarity=0.503 Sum_probs=55.6
Q ss_pred ccccccccceeecCceEEecCccccccCcccccccccCcCc-ceE-eeCCeeeeHHHHHHHhCCCCC
Q 034188 7 QQKCKVCEKTVYPVEQLSADGIVYHKSCFKCSHCKGTLKLS-NYS-SMEGVLYCKPHFEQLFKESGN 71 (102)
Q Consensus 7 ~~~C~~C~~~i~~~~~~~~~~~~~h~~Cf~C~~C~~~l~~~-~~~-~~~~~~~C~~~~~~~~~~~c~ 71 (102)
+++|..|++.|. .+.+.+.++.||.+||+|..|.++|..+ .|. ..++.+||..||.++|++.++
T Consensus 15 ~~~C~~C~~~I~-~~~~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~~~~~~C~~c~~~~~~~~~s 80 (81)
T 1x6a_A 15 GEFCHGCSLLMT-GPFMVAGEFKYHPECFACMSCKVIIEDGDAYALVQHATLYCGKCHNEVVSGPSS 80 (81)
T ss_dssp SCBCTTTCCBCC-SCCBCCTTCCBCTTSCBCTTTCCBCCTTSCEEECSSSCEEEHHHHHHHHCTTSC
T ss_pred CCcCccCCCCcC-ceEEEECCceeccccCCccCCCCccCCCCcEEEeeCCEEECHHHHHHHhcCCCC
Confidence 468999999997 5568899999999999999999999754 455 479999999999999998764
No 38
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=99.56 E-value=2.6e-15 Score=89.87 Aligned_cols=69 Identities=23% Similarity=0.563 Sum_probs=59.6
Q ss_pred ccccccccceeecCce-EEecCccccccCcccccccccCcCc-ceEeeCCeeeeHHHHHHHhCCCCCCCCC
Q 034188 7 QQKCKVCEKTVYPVEQ-LSADGIVYHKSCFKCSHCKGTLKLS-NYSSMEGVLYCKPHFEQLFKESGNFNKN 75 (102)
Q Consensus 7 ~~~C~~C~~~i~~~~~-~~~~~~~~h~~Cf~C~~C~~~l~~~-~~~~~~~~~~C~~~~~~~~~~~c~~~~~ 75 (102)
.++|..|++.|...+. +.+.++.||..||.|..|.++|..+ .|+..++.+||..||.++|+++|.....
T Consensus 8 ~~~C~~C~~~I~~~e~~~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~g~~yC~~cy~~~~~~~~~~~~~ 78 (123)
T 2l3k_A 8 DGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFSVGDRYLLINSDIVCEQDIYEWTKINGGSGGS 78 (123)
T ss_dssp SCCCSSSSCCCCTTCCCCCCSSCCCCTTTCBCTTTCCBCCTTCEEEECSSSEEEGGGHHHHHHHHTCCCCC
T ss_pred CCcccCCCCeecCCceEEEECCcccccccCccccCCCCCCCCCcEEeeCCEEEcHHHhHHHhccccCCCCC
Confidence 3489999999987554 6889999999999999999999544 5888999999999999999998875543
No 39
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=99.56 E-value=3.7e-15 Score=94.97 Aligned_cols=73 Identities=21% Similarity=0.488 Sum_probs=63.4
Q ss_pred CccccccccceeecCceEEecCccccccCcccccccccCcC--cceEeeCCeeeeHHHHHHHhCC--CCC-CCCCCCC
Q 034188 6 TQQKCKVCEKTVYPVEQLSADGIVYHKSCFKCSHCKGTLKL--SNYSSMEGVLYCKPHFEQLFKE--SGN-FNKNFQS 78 (102)
Q Consensus 6 ~~~~C~~C~~~i~~~~~~~~~~~~~h~~Cf~C~~C~~~l~~--~~~~~~~~~~~C~~~~~~~~~~--~c~-~~~~~~~ 78 (102)
..++|..|++.|...+.+.+.++.||.+||+|..|..+|.. ..|+.+++.+||..||.++|++ +|. |.+.|.+
T Consensus 4 ~~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~cy~~~~~~~~~C~~C~~~I~~ 81 (188)
T 1rut_X 4 SWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGACSACGQSIPA 81 (188)
T ss_dssp CCCBBTTTCCBCCCSEEEEETTEEECGGGCBCTTTCCBHHHHCSEEEEETTEEECHHHHHHHHSCCEECTTTCCEECT
T ss_pred CCCcCccCCCEeCCceeEEecCcEecccCcccCCCCcccccCCceEEEeCCccccccccccccccCCccccCCCcccc
Confidence 35689999999987666899999999999999999999986 4688999999999999999998 687 5555654
No 40
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.56 E-value=5.8e-15 Score=80.91 Aligned_cols=62 Identities=21% Similarity=0.333 Sum_probs=54.5
Q ss_pred CccccccccceeecCceEEecCccccccCcccccccccCc-CcceEeeCCeeeeHHHHHHHhCC
Q 034188 6 TQQKCKVCEKTVYPVEQLSADGIVYHKSCFKCSHCKGTLK-LSNYSSMEGVLYCKPHFEQLFKE 68 (102)
Q Consensus 6 ~~~~C~~C~~~i~~~~~~~~~~~~~h~~Cf~C~~C~~~l~-~~~~~~~~~~~~C~~~~~~~~~~ 68 (102)
.+++|++|++.|.. +.+.+.++.||++||+|..|..+|. ...|+..++.+||..||..+++.
T Consensus 4 ~~~~C~~C~~~I~~-~~v~a~~~~wH~~CF~C~~C~~~L~~~~~f~~~~~~~yC~~C~~~~~~~ 66 (73)
T 1wig_A 4 GSSGCDSCEKYITG-RVLEAGEKHYHPSCALCVRCGQMFAEGEEMYLQGSSIWHPACRQAARTE 66 (73)
T ss_dssp SCCSCSSSCCCCSS-CCBCCSSCCBCTTTSCCSSSCCCCCSSCCCEEETTEEECTTHHHHTSSS
T ss_pred CcCCcccCCCEecC-eeEEeCCCCCCCCcCEeCCCCCCCCCCCeeEeeCCEEEChHHChHhhcc
Confidence 35799999999965 5678999999999999999999998 45688899999999999887664
No 41
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=99.53 E-value=1.3e-14 Score=77.83 Aligned_cols=58 Identities=22% Similarity=0.644 Sum_probs=51.8
Q ss_pred ccccccccceeecC-ceEEecCcccc--ccCcccccccccCcCcceEeeCCeeee-HHHHHH
Q 034188 7 QQKCKVCEKTVYPV-EQLSADGIVYH--KSCFKCSHCKGTLKLSNYSSMEGVLYC-KPHFEQ 64 (102)
Q Consensus 7 ~~~C~~C~~~i~~~-~~~~~~~~~~h--~~Cf~C~~C~~~l~~~~~~~~~~~~~C-~~~~~~ 64 (102)
+++|++|++.|.+. +.+.+.++.|| .+||+|..|+.+|....|+..++++|| ..||.+
T Consensus 2 a~~C~~C~~~I~~~~~~v~a~~~~wH~~~~CF~C~~C~~~L~~~~f~~~~g~~yC~~~C~~k 63 (65)
T 2iyb_E 2 AVVCQGCHNAIDPEVQRVTYNNFSWHASTECFLCSCCSKCLIGQKFMPVEGMVFCSVECKKR 63 (65)
T ss_dssp CEECTTTSSEECTTSCEEEETTEEEETTTTTSBCTTTCCBCTTSCCEEETTEEESSHHHHHT
T ss_pred cCCCcCCCCeeccCceEEEECCCccCCCCCCEECCCCCCcCCCCceEEECCEEecCHHHhhh
Confidence 46899999999864 56899999999 999999999999987789999999999 778754
No 42
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=99.53 E-value=8.9e-15 Score=80.71 Aligned_cols=58 Identities=21% Similarity=0.566 Sum_probs=52.2
Q ss_pred ccccccccceeec----CceEEecCccccccCcccccccccCcCcceEeeCCeeeeHHHHHH
Q 034188 7 QQKCKVCEKTVYP----VEQLSADGIVYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKPHFEQ 64 (102)
Q Consensus 7 ~~~C~~C~~~i~~----~~~~~~~~~~~h~~Cf~C~~C~~~l~~~~~~~~~~~~~C~~~~~~ 64 (102)
+++|++|++.|.+ .+.+.+.++.||..||+|..|.++|....|+..++.+||..||.+
T Consensus 15 ~~~C~~C~~~I~~~g~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~~~~yC~~cy~~ 76 (77)
T 2egq_A 15 AKKCAGCKNPITGFGKGSSVVAYEGQSWHDYCFHCKKCSVNLANKRFVFHQEQVYCPDCAKK 76 (77)
T ss_dssp CCCCSSSCCCCCCCSSCCCEEEETTEEEETTTCBCSSSCCBCTTSCCCEETTEECCHHHHHH
T ss_pred CccCcccCCcccCCCCCceeEEECcceeCcccCEehhcCCCCCCCccEeECCEEEChHHhcc
Confidence 4689999999984 356899999999999999999999987778899999999999865
No 43
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.41 E-value=1.4e-13 Score=76.63 Aligned_cols=62 Identities=21% Similarity=0.427 Sum_probs=51.8
Q ss_pred ccccccccceeecCceEEecCccccccCcccccccccCcCcceEee-CCeeeeHHHHHHHhCCC
Q 034188 7 QQKCKVCEKTVYPVEQLSADGIVYHKSCFKCSHCKGTLKLSNYSSM-EGVLYCKPHFEQLFKES 69 (102)
Q Consensus 7 ~~~C~~C~~~i~~~~~~~~~~~~~h~~Cf~C~~C~~~l~~~~~~~~-~~~~~C~~~~~~~~~~~ 69 (102)
+++|+.|++.|. .+.+.+.++.||.+||+|..|.++|..+.++.. ++.+||..||.+.++..
T Consensus 15 ~~~C~~C~~~I~-~~~v~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~~~~C~~C~~~~~~~~ 77 (81)
T 1v6g_A 15 GTRCFSCDQFIE-GEVVSALGKTYHPDCFVCAVCRLPFPPGDRVTFNGKECMCQKCSLPVSVSG 77 (81)
T ss_dssp CCBCTTTCCBCC-SCCEEETTEEECTTTSSCSSSCCCCCSSSCEEEETTEEEEHHHHSCCSSCC
T ss_pred CCcCccccCEec-cceEEECCceeCccCCccccCCCCCCCCCEEEeCCCCEEChhhhcccCCCC
Confidence 469999999997 567899999999999999999999987766654 55679999997765543
No 44
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=99.38 E-value=3.6e-13 Score=81.06 Aligned_cols=61 Identities=25% Similarity=0.603 Sum_probs=53.9
Q ss_pred ccccccceeecCc-eEEecCccccccCcccccccccCcC-cceEeeCCeeeeHHHHHHHhCCC
Q 034188 9 KCKVCEKTVYPVE-QLSADGIVYHKSCFKCSHCKGTLKL-SNYSSMEGVLYCKPHFEQLFKES 69 (102)
Q Consensus 9 ~C~~C~~~i~~~~-~~~~~~~~~h~~Cf~C~~C~~~l~~-~~~~~~~~~~~C~~~~~~~~~~~ 69 (102)
+|..|++.|...+ .+.+.++.||+.||+|..|.++|.. ..|+..++++||..||.++|+++
T Consensus 68 ~C~~C~~~I~~~e~~~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~~~~~C~~c~~~~~~~~ 130 (131)
T 2xjy_A 68 LCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLINSDIVCEQDIYEWTKIN 130 (131)
T ss_dssp ECTTTCCEECTTSEEEEETTEEEEGGGCBCTTTCCBCCTTCEEEEETTEEEEGGGHHHHHHHH
T ss_pred ChhhcCCccCccceeEeeCCceECccCcccCCCCCCCCCCCEEEEECCEEEcHHHHHHHhhcc
Confidence 8999999997766 4789999999999999999999964 45888999999999999988754
No 45
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=99.29 E-value=1.9e-12 Score=82.40 Aligned_cols=63 Identities=27% Similarity=0.653 Sum_probs=53.1
Q ss_pred ccccccceeecCce-EEecCccccccCcccccccccCcCc-ceEeeCCeeeeHHHHHHHhCCCCC
Q 034188 9 KCKVCEKTVYPVEQ-LSADGIVYHKSCFKCSHCKGTLKLS-NYSSMEGVLYCKPHFEQLFKESGN 71 (102)
Q Consensus 9 ~C~~C~~~i~~~~~-~~~~~~~~h~~Cf~C~~C~~~l~~~-~~~~~~~~~~C~~~~~~~~~~~c~ 71 (102)
+|..|++.|...+. +.+.++.||..||+|..|.++|..+ .|+..++++||..||.++|+++|.
T Consensus 71 ~C~~C~~~I~~~e~~i~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~g~~yC~~c~~~~~~~~~~ 135 (188)
T 1rut_X 71 ACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHYINGSLFCEHDRPTALINGHL 135 (188)
T ss_dssp ECTTTCCEECTTSEEEEETTEEECGGGCBCTTTCCBCCTTCEEEEETTEEEEGGGCCTTTC----
T ss_pred ccccCCCccccCcEEEEcCCCEEeCCCCeECCCCCCCCCCCeEEEECCeEECHHHHHHHhccccc
Confidence 79999999987664 7899999999999999999999644 588889999999999999988775
No 46
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=99.28 E-value=3.4e-12 Score=76.29 Aligned_cols=60 Identities=22% Similarity=0.625 Sum_probs=52.9
Q ss_pred ccccccccceeecCc-eEEecCcccc--ccCcccccccccCcCcceEeeCCeeeeHHHHHHHh
Q 034188 7 QQKCKVCEKTVYPVE-QLSADGIVYH--KSCFKCSHCKGTLKLSNYSSMEGVLYCKPHFEQLF 66 (102)
Q Consensus 7 ~~~C~~C~~~i~~~~-~~~~~~~~~h--~~Cf~C~~C~~~l~~~~~~~~~~~~~C~~~~~~~~ 66 (102)
+++|.+|++.|.+.+ .+.+.++.|| ++||+|..|.++|....|+..++++||..++.++|
T Consensus 63 ~~~C~~C~~~I~~~~~~~~a~~~~~H~~~~CF~C~~C~~~l~~~~f~~~~~~~yC~~~~~~~f 125 (126)
T 2xqn_T 63 AVVCQGCHNAIDPEVQRVTYNNFSWHASTECFLCSCCSKCLIGQKFMPVEGMVFCSVECKKRM 125 (126)
T ss_dssp CCBCTTTCSBCCTTSCEEEETTEEEESSTTTSBCTTTCCBCTTSEEEEETTEEESSHHHHHSC
T ss_pred CccCcccCCcCCcCceEEECCCCEeeCCCCCcCcCCCCCccCCCeeEeECCEEcchHHhhhhc
Confidence 468999999998654 4899999999 99999999999998767888999999998887765
No 47
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=99.16 E-value=3e-11 Score=75.61 Aligned_cols=63 Identities=29% Similarity=0.613 Sum_probs=53.2
Q ss_pred ccccccccceeecCce-EEecCccccccCcccccccccCcCc-ceEe-eCCeeeeHHHHHHHhCCC
Q 034188 7 QQKCKVCEKTVYPVEQ-LSADGIVYHKSCFKCSHCKGTLKLS-NYSS-MEGVLYCKPHFEQLFKES 69 (102)
Q Consensus 7 ~~~C~~C~~~i~~~~~-~~~~~~~~h~~Cf~C~~C~~~l~~~-~~~~-~~~~~~C~~~~~~~~~~~ 69 (102)
+++|..|++.|...+. +.+.++.||..||+|..|..+|..+ .|+. .++++||..||.+++...
T Consensus 65 ~~~C~~C~~~I~~~~~v~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~~g~~~C~~c~~~~~~~~ 130 (169)
T 2rgt_A 65 GTKCAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYETAKQGG 130 (169)
T ss_dssp SCBCTTTCCBCCTTSEEEEETTEEEEGGGCBCTTTCCBCCTTCEEEECTTSCEEEHHHHHHHHHCC
T ss_pred cccccccccccCCCcEEEEcCCceEeeCCCcCCCCCCCCCCCCceEEccCCeEECHHHHHHHhhcc
Confidence 4689999999987665 5899999999999999999999855 4544 589999999999887653
No 48
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=99.07 E-value=1e-10 Score=73.92 Aligned_cols=59 Identities=31% Similarity=0.674 Sum_probs=49.9
Q ss_pred ccccccccceeecCce-EEecCccccccCcccccccccCcCcc-eEe-eCCeeeeHHHHHHH
Q 034188 7 QQKCKVCEKTVYPVEQ-LSADGIVYHKSCFKCSHCKGTLKLSN-YSS-MEGVLYCKPHFEQL 65 (102)
Q Consensus 7 ~~~C~~C~~~i~~~~~-~~~~~~~~h~~Cf~C~~C~~~l~~~~-~~~-~~~~~~C~~~~~~~ 65 (102)
.++|..|++.|...+. +.+.++.||..||+|..|.++|..+. |+. .++++||..||.++
T Consensus 119 ~~kC~~C~~~I~~~~~v~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~~g~~yC~~cy~~~ 180 (182)
T 2jtn_A 119 GTKCAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYETA 180 (182)
T ss_dssp SCCCTTTCCCCCSSCCCCEETTEECCTTTCCCTTTCCCCCTTCEEEECTTSCEECHHHHHHH
T ss_pred ccccccCCCccCCCceEEecCCCCEEeCCCcCCCCCCCCCCCCceEEccCCEEECHHHHHHh
Confidence 4689999999987664 58999999999999999999998554 544 58999999999765
No 49
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=98.42 E-value=5.1e-08 Score=44.54 Aligned_cols=29 Identities=38% Similarity=0.894 Sum_probs=26.7
Q ss_pred ccccccccceeecCceEEecCccccccCc
Q 034188 7 QQKCKVCEKTVYPVEQLSADGIVYHKSCF 35 (102)
Q Consensus 7 ~~~C~~C~~~i~~~~~~~~~~~~~h~~Cf 35 (102)
.++|..|++.|++.+.+.+.++.||..||
T Consensus 3 ~~~C~~C~k~Vy~~Ek~~~~g~~~Hk~CF 31 (31)
T 1zfo_A 3 NPNCARCGKIVYPTEKVNCLDKFWHKACF 31 (31)
T ss_dssp CCBCSSSCSBCCGGGCCCSSSSCCCGGGC
T ss_pred CCcCCccCCEEecceeEEECCeEecccCC
Confidence 35899999999999999999999999997
No 50
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=98.23 E-value=4.6e-07 Score=51.72 Aligned_cols=35 Identities=31% Similarity=0.645 Sum_probs=30.4
Q ss_pred ccccccccceeecCc-eEEecCccccccCccccccc
Q 034188 7 QQKCKVCEKTVYPVE-QLSADGIVYHKSCFKCSHCK 41 (102)
Q Consensus 7 ~~~C~~C~~~i~~~~-~~~~~~~~~h~~Cf~C~~C~ 41 (102)
.++|..|++.|.+.+ .+.+.++.||++||.|..|+
T Consensus 66 ~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~ 101 (101)
T 2cup_A 66 SPKCKGCFKAIVAGDQNVEYKGTVWHKDCFSGPSSG 101 (101)
T ss_dssp CCBCSSSCCBCCSSSCEEESSSCEEETTTCCCTTCC
T ss_pred CCccccCCCccccCCeEEEeCCcchHHhCCCCCCCC
Confidence 468999999997655 58999999999999999884
No 51
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=96.46 E-value=0.00039 Score=40.85 Aligned_cols=62 Identities=11% Similarity=0.212 Sum_probs=37.1
Q ss_pred ccccccceeec--CceEEecCccccccCc--------ccccccccCc-------------CcceEeeCCeeeeHHHHHHH
Q 034188 9 KCKVCEKTVYP--VEQLSADGIVYHKSCF--------KCSHCKGTLK-------------LSNYSSMEGVLYCKPHFEQL 65 (102)
Q Consensus 9 ~C~~C~~~i~~--~~~~~~~~~~~h~~Cf--------~C~~C~~~l~-------------~~~~~~~~~~~~C~~~~~~~ 65 (102)
+|..|++.+.. ...+...++.|...|| +|..|..++. ...|+..++++||..||.++
T Consensus 34 ~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~~f~~~~~C~~C~~~I~~~~~~~~g~~~l~g~~f~~~~~~~yC~~~~~~~ 113 (122)
T 1m3v_A 34 KCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGAGGSGGHMGSGGDVMVVGEPTLMGGEFGDEDERLITRLENTQF 113 (122)
T ss_dssp CCSSSCCCTTTSEECCEEETTEEECHHHHHHHHCCCCSSSCSSCCSCCEESSSSSSSSCCSCTTCCTTCCCCEECTTTTT
T ss_pred CcCCCCCcccccCCeEEEECCeeecHHHHHHHcCCCCccccCCCCcCchheEEcCCcCCCCCccEecCCEeEccCcchhc
Confidence 46666666631 1124555555554444 4555655544 23466778999999998877
Q ss_pred hCCCC
Q 034188 66 FKESG 70 (102)
Q Consensus 66 ~~~~c 70 (102)
+...+
T Consensus 114 ~~~~g 118 (122)
T 1m3v_A 114 DAANG 118 (122)
T ss_dssp TCCSC
T ss_pred hhhcC
Confidence 65543
No 52
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=95.42 E-value=0.0019 Score=34.83 Aligned_cols=18 Identities=17% Similarity=0.174 Sum_probs=8.5
Q ss_pred CeeeeHHHHHHHhCCCCC
Q 034188 54 GVLYCKPHFEQLFKESGN 71 (102)
Q Consensus 54 ~~~~C~~~~~~~~~~~c~ 71 (102)
|++||+.||.++|+++|.
T Consensus 2 g~~yC~~cy~~~~~~~C~ 19 (80)
T 2cuq_A 2 SSGSSGPCYENKFAPRCA 19 (80)
T ss_dssp CCCSCCCCCCCCSSCCCT
T ss_pred CcEEcHHHHccccCCcCC
Confidence 344444444444444444
No 53
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.38 E-value=0.0025 Score=34.54 Aligned_cols=25 Identities=8% Similarity=0.134 Sum_probs=14.1
Q ss_pred CCeeeeHHHHHHHhCCCCC-CCCCCC
Q 034188 53 EGVLYCKPHFEQLFKESGN-FNKNFQ 77 (102)
Q Consensus 53 ~~~~~C~~~~~~~~~~~c~-~~~~~~ 77 (102)
+|++||+.||.++|+++|. |.+.|.
T Consensus 1 ~g~~yC~~~y~~~~~~~C~~C~~~I~ 26 (82)
T 2ehe_A 1 GSSGSSGPCYDNTFANTCAECQQLIG 26 (82)
T ss_dssp CCCCCCCCCCCCCCSCBCTTTCCBCC
T ss_pred CCceechhHhCcccCCcCccCCCccc
Confidence 3456666666666666665 444444
No 54
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=95.14 E-value=0.0035 Score=33.88 Aligned_cols=23 Identities=9% Similarity=-0.117 Sum_probs=11.3
Q ss_pred eeeeHHHHHHHhCCCCC-CCCCCC
Q 034188 55 VLYCKPHFEQLFKESGN-FNKNFQ 77 (102)
Q Consensus 55 ~~~C~~~~~~~~~~~c~-~~~~~~ 77 (102)
.+||+.||.++|+++|. |.+.|.
T Consensus 3 ~~yC~~~y~~~~~~~C~~C~~~I~ 26 (81)
T 1x6a_A 3 SGSSGKDYWGKFGEFCHGCSLLMT 26 (81)
T ss_dssp CCCCCCCSSCCSSCBCTTTCCBCC
T ss_pred CccchhHHhhhcCCcCccCCCCcC
Confidence 44555555555555554 333343
No 55
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=94.70 E-value=0.0028 Score=33.90 Aligned_cols=9 Identities=33% Similarity=1.084 Sum_probs=4.9
Q ss_pred cccccccCc
Q 034188 37 CSHCKGTLK 45 (102)
Q Consensus 37 C~~C~~~l~ 45 (102)
|..|..++.
T Consensus 18 C~~C~~~I~ 26 (77)
T 2egq_A 18 CAGCKNPIT 26 (77)
T ss_dssp CSSSCCCCC
T ss_pred CcccCCccc
Confidence 555555554
No 56
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=94.38 E-value=0.0032 Score=33.89 Aligned_cols=25 Identities=24% Similarity=0.445 Sum_probs=11.9
Q ss_pred ccccccccCcCcceEeeCCeeeeHHH
Q 034188 36 KCSHCKGTLKLSNYSSMEGVLYCKPH 61 (102)
Q Consensus 36 ~C~~C~~~l~~~~~~~~~~~~~C~~~ 61 (102)
+|..|..++.. .+....++.|-..|
T Consensus 17 ~C~~C~~~I~~-~~v~a~~~~~H~~C 41 (80)
T 1x3h_A 17 KCGGCNRPVLE-NYLSAMDTVWHPEC 41 (80)
T ss_dssp BCTTTCCBCCS-SCEEETTEEECTTT
T ss_pred ccccCCCeecc-eeEEECCCeEecCc
Confidence 45666666543 33333445544333
No 57
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=94.00 E-value=0.0082 Score=32.38 Aligned_cols=25 Identities=20% Similarity=0.393 Sum_probs=12.1
Q ss_pred ccccccccCcCcceEeeCCeeeeHHH
Q 034188 36 KCSHCKGTLKLSNYSSMEGVLYCKPH 61 (102)
Q Consensus 36 ~C~~C~~~l~~~~~~~~~~~~~C~~~ 61 (102)
+|..|..++. .......+..|-..|
T Consensus 17 ~C~~C~~~I~-~~~v~a~~~~wH~~C 41 (81)
T 1v6g_A 17 RCFSCDQFIE-GEVVSALGKTYHPDC 41 (81)
T ss_dssp BCTTTCCBCC-SCCEEETTEEECTTT
T ss_pred cCccccCEec-cceEEECCceeCccC
Confidence 4566666554 233333455554444
No 58
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=92.75 E-value=0.01 Score=32.02 Aligned_cols=26 Identities=19% Similarity=0.447 Sum_probs=13.0
Q ss_pred ccccccccCcCcc-eEeeCCeeeeHHH
Q 034188 36 KCSHCKGTLKLSN-YSSMEGVLYCKPH 61 (102)
Q Consensus 36 ~C~~C~~~l~~~~-~~~~~~~~~C~~~ 61 (102)
.|..|...+.... +....++.|-..|
T Consensus 17 ~C~~C~~~I~~~~~~~~a~~~~~H~~C 43 (82)
T 1x63_A 17 KCKGCFKAIVAGDQNVEYKGTVWHKDC 43 (82)
T ss_dssp BCSSSCCBCCSSSCEEECSSCEEETTT
T ss_pred cCccCCcccccCceEEEECcccccccc
Confidence 4666666665332 2333455554444
No 59
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=91.33 E-value=0.03 Score=32.19 Aligned_cols=61 Identities=10% Similarity=0.035 Sum_probs=37.2
Q ss_pred cccccccceeec--CceEEecCccccccCc---------ccc-----cccccCc-CcceEeeCCeeeeHHHHHHHhCC
Q 034188 8 QKCKVCEKTVYP--VEQLSADGIVYHKSCF---------KCS-----HCKGTLK-LSNYSSMEGVLYCKPHFEQLFKE 68 (102)
Q Consensus 8 ~~C~~C~~~i~~--~~~~~~~~~~~h~~Cf---------~C~-----~C~~~l~-~~~~~~~~~~~~C~~~~~~~~~~ 68 (102)
-+|..|++.+.. ...+...+++|...|| .|. .|...+. ...|...++++||..|+.++.+.
T Consensus 31 F~C~~C~~~L~~~g~~~~~~~g~~yC~~~y~~~f~~~c~~c~~~~~~~~~~~~~~g~~f~~~~~~~~C~~~~~~~~~~ 108 (114)
T 1j2o_A 31 LSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLGGSGGHMGSGGDVMVVGEPTLMGGEFGDEDERLITRLENTQFDAA 108 (114)
T ss_dssp CCCSSSCSCCCCSSSCCCCBTTBCCCHHHHHHHHTSCCSSCBSCSCCCSSCSSTTSSBCCCSSSCCCEEEECTTCCCT
T ss_pred CcccccCCchhcCCCeeEEECCeeechHHHHHHhCcccCcCCCCceeEcCCccCCCCeeEEcCCEeecchhhhccccc
Confidence 478889998853 1234556666654433 221 2333433 33577789999999998776544
No 60
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=73.15 E-value=1.3 Score=23.48 Aligned_cols=17 Identities=12% Similarity=0.552 Sum_probs=11.9
Q ss_pred ccCCccccccccceeec
Q 034188 3 FIGTQQKCKVCEKTVYP 19 (102)
Q Consensus 3 ~~~~~~~C~~C~~~i~~ 19 (102)
|......|+.|...|..
T Consensus 11 y~~~i~~C~IC~~~i~~ 27 (74)
T 2ct0_A 11 YPDAVKICNICHSLLIQ 27 (74)
T ss_dssp CSSSSCBCSSSCCBCSS
T ss_pred ccCCCCcCcchhhHccc
Confidence 44555678888888854
No 61
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=63.23 E-value=2.8 Score=27.23 Aligned_cols=15 Identities=13% Similarity=0.494 Sum_probs=10.3
Q ss_pred CccccccccceeecC
Q 034188 6 TQQKCKVCEKTVYPV 20 (102)
Q Consensus 6 ~~~~C~~C~~~i~~~ 20 (102)
....|..|...|..+
T Consensus 179 ~i~~C~iC~~iv~~g 193 (238)
T 3nw0_A 179 AVKICNICHSLLIQG 193 (238)
T ss_dssp TCCBCTTTCSBCSSC
T ss_pred CCCcCcchhhHHhCC
Confidence 356788888887543
No 62
>2gvi_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.87A {Thermoplasma acidophilum} SCOP: d.81.3.1 g.39.1.18
Probab=60.04 E-value=5.2 Score=25.28 Aligned_cols=30 Identities=20% Similarity=0.475 Sum_probs=22.2
Q ss_pred cccccccccCcCcceEeeCCeeeeHHHHHH
Q 034188 35 FKCSHCKGTLKLSNYSSMEGVLYCKPHFEQ 64 (102)
Q Consensus 35 f~C~~C~~~l~~~~~~~~~~~~~C~~~~~~ 64 (102)
..|..|+...........+++.+|..|+.+
T Consensus 173 ~~C~~CGE~~~~~~~~~~~g~~~C~~C~~~ 202 (204)
T 2gvi_A 173 VRCDVCGEYTYEADAKLLNGKPVCKPDYYG 202 (204)
T ss_dssp EECTTTCCEEEGGGCEEETTEEECHHHHHC
T ss_pred eECCCCCCchhhcceeeeCCcEEChhhhcc
Confidence 458888777665555567899999999864
No 63
>1jjd_A Metallothionein, SMTA; zinc finger, zinc cluster, metal binding PR; NMR {Synechococcus elongatus} SCOP: g.46.1.1
Probab=59.84 E-value=8.3 Score=19.26 Aligned_cols=29 Identities=21% Similarity=0.508 Sum_probs=20.8
Q ss_pred ccccccccCcCcceEeeCCeeee-HHHHHH
Q 034188 36 KCSHCKGTLKLSNYSSMEGVLYC-KPHFEQ 64 (102)
Q Consensus 36 ~C~~C~~~l~~~~~~~~~~~~~C-~~~~~~ 64 (102)
.|..|...+....-...+|+.|| +.+...
T Consensus 9 aC~~C~c~Vs~~eai~~dGK~YCSe~Ca~g 38 (55)
T 1jjd_A 9 ACEPCLCNVDPSKAIDRNGLYYCSEACADG 38 (55)
T ss_dssp SSTTCCCCBCTTTSEESSSCEESSHHHHHT
T ss_pred cCCCCeeEechHHhhhcCCeEEehHHHHcc
Confidence 46777777766667778999998 666543
No 64
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=57.24 E-value=3.8 Score=22.32 Aligned_cols=31 Identities=26% Similarity=0.658 Sum_probs=23.9
Q ss_pred ccccccceeecCceEEecCccccccCccccc
Q 034188 9 KCKVCEKTVYPVEQLSADGIVYHKSCFKCSH 39 (102)
Q Consensus 9 ~C~~C~~~i~~~~~~~~~~~~~h~~Cf~C~~ 39 (102)
.|.-|.+.+.+...++.-...-|.-||-|..
T Consensus 17 ~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr 47 (93)
T 2cs3_A 17 CCTICHERLEDTHFVQCPSVPSHKFCFPCSR 47 (93)
T ss_dssp CCSSSCSCCSSTTSEECSSCSSCEECHHHHH
T ss_pred EeecchhhhccCceeeCCCccCCeeeccccH
Confidence 6888888887666677777777888888765
No 65
>1v9x_A Poly (ADP-ribose) polymerase; PARP, DNA repair, inflammation, cell death, structural genomics; NMR {Arabidopsis thaliana}
Probab=53.54 E-value=5.5 Score=22.92 Aligned_cols=15 Identities=20% Similarity=0.654 Sum_probs=12.2
Q ss_pred ccccccccceeecCc
Q 034188 7 QQKCKVCEKTVYPVE 21 (102)
Q Consensus 7 ~~~C~~C~~~i~~~~ 21 (102)
...|..|++.|..++
T Consensus 20 RA~Ck~Ck~kI~Kge 34 (114)
T 1v9x_A 20 RSSCKTCKSVINKEN 34 (114)
T ss_dssp CCBCSSSCCBCCSSS
T ss_pred CCCchhhCCccCCCC
Confidence 358999999997766
No 66
>1uw0_A DNA ligase III; DNA repair, zinc finger, PARP-like finger, cell division, DNA replication, nuclear protein; HET: DNA; NMR {Homo sapiens} SCOP: g.39.1.12
Probab=49.06 E-value=9.3 Score=21.97 Aligned_cols=15 Identities=20% Similarity=0.488 Sum_probs=12.3
Q ss_pred ccccccccceeecCc
Q 034188 7 QQKCKVCEKTVYPVE 21 (102)
Q Consensus 7 ~~~C~~C~~~i~~~~ 21 (102)
...|..|++.|.-++
T Consensus 15 RA~Ck~C~~kI~Kge 29 (117)
T 1uw0_A 15 TAGCKKCKEKIVKGV 29 (117)
T ss_dssp CEECTTSSCEECTTC
T ss_pred CccchhhCcccCCCC
Confidence 358999999997776
No 67
>2dmj_A Poly (ADP-ribose) polymerase family, member 1; zinc finger, PARP-1, ADPRT, NAD(+) ADP-ribosyltransferase 1, poly(ADP-ribose) synthetase 1; NMR {Homo sapiens}
Probab=48.09 E-value=6 Score=22.38 Aligned_cols=15 Identities=20% Similarity=0.567 Sum_probs=11.4
Q ss_pred ccccccccceeecCc
Q 034188 7 QQKCKVCEKTVYPVE 21 (102)
Q Consensus 7 ~~~C~~C~~~i~~~~ 21 (102)
...|..|++.|..++
T Consensus 25 Ra~Ck~C~~kI~Kge 39 (106)
T 2dmj_A 25 RASCKKCSESIPKDS 39 (106)
T ss_dssp CCBCSSSCCBCCTTC
T ss_pred CCcchhhCCccCCCC
Confidence 357889999887666
No 68
>2das_A Zinc finger MYM-type protein 5; trash domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.17
Probab=42.24 E-value=32 Score=17.49 Aligned_cols=33 Identities=21% Similarity=0.472 Sum_probs=20.7
Q ss_pred CcccccccccCcCcceEe-e--CCeeeeHHHHHHHh
Q 034188 34 CFKCSHCKGTLKLSNYSS-M--EGVLYCKPHFEQLF 66 (102)
Q Consensus 34 Cf~C~~C~~~l~~~~~~~-~--~~~~~C~~~~~~~~ 66 (102)
-..|..|++.|..+.++. + ..++||..--...|
T Consensus 20 ~v~C~~CKk~lqKGQtAyqrkGs~~LFCS~~CL~~f 55 (62)
T 2das_A 20 KITCANCKKPLQKGQTAYQRKGSAHLFCSTTCLSSF 55 (62)
T ss_dssp SCBCTTTCCBCCTTSCCEECTTCCCEESSHHHHHHH
T ss_pred ccChhhccchhhcCceeeeecCchhheechHHHccc
Confidence 456888888988775443 2 66778844333333
No 69
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=37.88 E-value=12 Score=18.04 Aligned_cols=12 Identities=17% Similarity=0.609 Sum_probs=6.0
Q ss_pred CCeeeeHHHHHH
Q 034188 53 EGVLYCKPHFEQ 64 (102)
Q Consensus 53 ~~~~~C~~~~~~ 64 (102)
=+..||..|..+
T Consensus 28 CgH~fc~~Ci~~ 39 (64)
T 2xeu_A 28 CGHVFCSQCLRD 39 (64)
T ss_dssp TSCEEEHHHHHH
T ss_pred CCCchhHHHHHH
Confidence 444555555543
No 70
>1loi_A Cyclic 3',5'-AMP specific phosphodiesterase RD1; hydrolase, C-AMP phosphodiesterase; NMR {Rattus norvegicus} SCOP: j.51.1.1
Probab=37.64 E-value=5.3 Score=16.23 Aligned_cols=13 Identities=23% Similarity=0.644 Sum_probs=9.5
Q ss_pred cccccccccCcCc
Q 034188 35 FKCSHCKGTLKLS 47 (102)
Q Consensus 35 f~C~~C~~~l~~~ 47 (102)
|.|..|.+++-.+
T Consensus 6 ffcetcskpwlvg 18 (26)
T 1loi_A 6 FFCETCSKPWLVG 18 (26)
T ss_dssp HHHHTSSCTTGGG
T ss_pred HHHHhcCCchhhh
Confidence 5688888887654
No 71
>3od8_A Poly [ADP-ribose] polymerase 1; protein-DNA complex, PARP zinc finger, DNA binding protein-D complex; 2.40A {Homo sapiens} PDB: 3oda_A 4dqy_A*
Probab=36.21 E-value=10 Score=21.93 Aligned_cols=14 Identities=21% Similarity=0.572 Sum_probs=10.5
Q ss_pred cccccccceeecCc
Q 034188 8 QKCKVCEKTVYPVE 21 (102)
Q Consensus 8 ~~C~~C~~~i~~~~ 21 (102)
..|..|++.|..++
T Consensus 39 A~Ck~C~~kI~Kge 52 (116)
T 3od8_A 39 ASCKKCSESIPKDS 52 (116)
T ss_dssp CBCTTTCCBCCTTS
T ss_pred ccCcccCCccCCCC
Confidence 47888888886655
No 72
>3odc_A Poly [ADP-ribose] polymerase 1; protein-DNA complex, PARP zinc finger, DNA binding protein-D complex; 2.80A {Homo sapiens} PDB: 3ode_A 2l31_A
Probab=35.85 E-value=12 Score=21.43 Aligned_cols=15 Identities=20% Similarity=0.494 Sum_probs=11.8
Q ss_pred ccccccccceeecCc
Q 034188 7 QQKCKVCEKTVYPVE 21 (102)
Q Consensus 7 ~~~C~~C~~~i~~~~ 21 (102)
...|..|++.|..++
T Consensus 19 Ra~Ck~C~~kI~Kg~ 33 (111)
T 3odc_A 19 RSTCKGCMEKIEKGQ 33 (111)
T ss_dssp CCBCTTTCCBCCTTC
T ss_pred CccccccCCCccCCc
Confidence 458999999987666
No 73
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=34.32 E-value=20 Score=18.62 Aligned_cols=10 Identities=30% Similarity=0.959 Sum_probs=5.3
Q ss_pred ccccccccee
Q 034188 8 QKCKVCEKTV 17 (102)
Q Consensus 8 ~~C~~C~~~i 17 (102)
..|+.|...+
T Consensus 16 ~~C~IC~~~~ 25 (81)
T 2ecl_A 16 DTCAICRVQV 25 (81)
T ss_dssp SCBTTTTBCT
T ss_pred CCCcccChhh
Confidence 3455555554
No 74
>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=32.96 E-value=22 Score=18.32 Aligned_cols=26 Identities=23% Similarity=0.763 Sum_probs=13.4
Q ss_pred ccccccccCcCcceEeeCCeeeeHHH
Q 034188 36 KCSHCKGTLKLSNYSSMEGVLYCKPH 61 (102)
Q Consensus 36 ~C~~C~~~l~~~~~~~~~~~~~C~~~ 61 (102)
+|..|++.+.-..|.-+-+..||..|
T Consensus 17 rC~~C~kkvgl~~f~CrCg~~FC~~H 42 (64)
T 1wfh_A 17 RCTVCRKRVGLTGFMCRCGTTFCGSH 42 (64)
T ss_dssp CCTTTCCCCCTTCEECSSSCEECTTT
T ss_pred cChhhCCccCccCEEeecCCEecccc
Confidence 34455554443334445566677655
No 75
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=32.43 E-value=16 Score=17.96 Aligned_cols=9 Identities=22% Similarity=0.918 Sum_probs=4.2
Q ss_pred cccccccee
Q 034188 9 KCKVCEKTV 17 (102)
Q Consensus 9 ~C~~C~~~i 17 (102)
.|..|...+
T Consensus 7 ~C~IC~~~~ 15 (68)
T 1chc_A 7 RCPICLEDP 15 (68)
T ss_dssp CCSSCCSCC
T ss_pred CCeeCCccc
Confidence 455554443
No 76
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=31.81 E-value=34 Score=17.20 Aligned_cols=32 Identities=6% Similarity=0.022 Sum_probs=16.6
Q ss_pred CcccccccccCcCcc--eEeeCCeeeeHHHHHHH
Q 034188 34 CFKCSHCKGTLKLSN--YSSMEGVLYCKPHFEQL 65 (102)
Q Consensus 34 Cf~C~~C~~~l~~~~--~~~~~~~~~C~~~~~~~ 65 (102)
-..|..|...+.... ....=+..||..|..+.
T Consensus 23 ~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w 56 (75)
T 1x4j_A 23 QTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKW 56 (75)
T ss_dssp CCEETTTTEECCBTCEEEEETTTEEEETTHHHHH
T ss_pred CCCCeECCcccCCCCeEEEECCCCHhHHHHHHHH
Confidence 345666665554332 12235666777766443
No 77
>2e5r_A Dystrobrevin alpha; ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=31.51 E-value=54 Score=16.45 Aligned_cols=35 Identities=23% Similarity=0.468 Sum_probs=21.5
Q ss_pred ccccccCccccccccc-CcCcceEee--CCeeeeHHHHHH
Q 034188 28 IVYHKSCFKCSHCKGT-LKLSNYSSM--EGVLYCKPHFEQ 64 (102)
Q Consensus 28 ~~~h~~Cf~C~~C~~~-l~~~~~~~~--~~~~~C~~~~~~ 64 (102)
.++|. ..|..|... +.+..|.-. .+--+|..||..
T Consensus 7 ~v~H~--~~Cd~C~~~pi~G~RykC~~C~d~DLC~~C~~~ 44 (63)
T 2e5r_A 7 GVFHP--VECSYCHSESMMGFRYRCQQCHNYQLCQDCFWR 44 (63)
T ss_dssp SCCSC--SCCSSSCCCSSCSCEEEESSCSSCEECHHHHHH
T ss_pred CceeC--CCCcCCCCcceecceEEecCCCCchhHHHHHhC
Confidence 45565 678888764 543333322 456689999876
No 78
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=30.82 E-value=19 Score=18.29 Aligned_cols=28 Identities=18% Similarity=0.522 Sum_probs=18.4
Q ss_pred cccccccceeecCce-EEec---CccccccCc
Q 034188 8 QKCKVCEKTVYPVEQ-LSAD---GIVYHKSCF 35 (102)
Q Consensus 8 ~~C~~C~~~i~~~~~-~~~~---~~~~h~~Cf 35 (102)
..|..|++.+.+... +... ...||..|.
T Consensus 9 ~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cv 40 (65)
T 2vpb_A 9 YPCGICTNEVNDDQDAILCEASCQKWFHRICT 40 (65)
T ss_dssp CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHH
T ss_pred CcCccCCCccCCCCCeEecccCccccCchhcc
Confidence 479999999865554 4445 445676663
No 79
>1wjv_A Cell growth regulating nucleolar protein LYAR; DNA-binding protein, C2H2 type zinc-finger, structural genomics; NMR {Mus musculus} SCOP: g.37.1.2 g.37.1.2
Probab=30.40 E-value=2.8 Score=22.61 Aligned_cols=38 Identities=16% Similarity=0.396 Sum_probs=21.7
Q ss_pred ccccccceeecCceEEecCccccccCcccccccccCcC
Q 034188 9 KCKVCEKTVYPVEQLSADGIVYHKSCFKCSHCKGTLKL 46 (102)
Q Consensus 9 ~C~~C~~~i~~~~~~~~~~~~~h~~Cf~C~~C~~~l~~ 46 (102)
.|..|++.|.-..+-....+.....-|.|.+|...+..
T Consensus 12 ~C~~Cgd~lKK~kv~~H~~~Cr~~~~~SCIDC~~~F~~ 49 (79)
T 1wjv_A 12 TCNACGESVKKIQVEKHVSNCRNCECLSCIDCGKDFWG 49 (79)
T ss_dssp EESSSCCEEETTHHHHHHHHCTTCCEEEETTTTEEEEG
T ss_pred EcCCCCCeeecccchhHHhhCCCCCcEEecccCCeeCC
Confidence 69999998854432122222222234778888776653
No 80
>2cs2_A Poly [ADP-ribose] polymerase-1; DNA BIND, DNA repair, necrosis, apoptosis, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=29.74 E-value=22 Score=20.96 Aligned_cols=15 Identities=20% Similarity=0.494 Sum_probs=12.2
Q ss_pred ccccccccceeecCc
Q 034188 7 QQKCKVCEKTVYPVE 21 (102)
Q Consensus 7 ~~~C~~C~~~i~~~~ 21 (102)
...|..|++.|.-.+
T Consensus 27 RA~CK~C~~kI~Kge 41 (134)
T 2cs2_A 27 RSTCKGCMEKIEKGQ 41 (134)
T ss_dssp CCBCSSSCCBCCTTS
T ss_pred CccchhcCCcccCCC
Confidence 358999999997766
No 81
>2yrc_A Protein transport protein SEC23A; zinc binding, copii, coat protein complex-II, endoplasmic reticulum, golgi, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yrd_A
Probab=29.57 E-value=37 Score=16.95 Aligned_cols=28 Identities=18% Similarity=0.392 Sum_probs=18.6
Q ss_pred ccCCcccccc--ccceeecCceEEecCccc
Q 034188 3 FIGTQQKCKV--CEKTVYPVEQLSADGIVY 30 (102)
Q Consensus 3 ~~~~~~~C~~--C~~~i~~~~~~~~~~~~~ 30 (102)
...+..+|.+ |...|-+--.+...++.|
T Consensus 5 ~~~~pvRC~r~~CraylNP~~~~~~~~~~W 34 (59)
T 2yrc_A 5 SSGEPVLCSRTTCRAVLNPLCQVDYRAKLW 34 (59)
T ss_dssp SCCCCCBCSCTTTCCBCCTTSEEEGGGTEE
T ss_pred CCCCCcccCCCCCCeEECCceEEECCCCEE
Confidence 3456678988 998885544455556665
No 82
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=28.81 E-value=56 Score=16.88 Aligned_cols=13 Identities=38% Similarity=0.815 Sum_probs=10.9
Q ss_pred CCeeeeHHHHHHH
Q 034188 53 EGVLYCKPHFEQL 65 (102)
Q Consensus 53 ~~~~~C~~~~~~~ 65 (102)
++.+||..||.+.
T Consensus 26 dgDLYC~rC~rE~ 38 (67)
T 2d8v_A 26 DGDLYCARCFREG 38 (67)
T ss_dssp TSEEECSSHHHHH
T ss_pred CCceehHHHHHHH
Confidence 6789999999765
No 83
>1wfp_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=28.66 E-value=28 Score=18.45 Aligned_cols=28 Identities=18% Similarity=0.580 Sum_probs=17.1
Q ss_pred cccccccccCcCcceEeeCCeeeeHHHH
Q 034188 35 FKCSHCKGTLKLSNYSSMEGVLYCKPHF 62 (102)
Q Consensus 35 f~C~~C~~~l~~~~~~~~~~~~~C~~~~ 62 (102)
-+|..|.+.+.-..|.-+-+..||..|-
T Consensus 26 ~RC~~C~kkvgL~~f~CrCg~~FCs~HR 53 (74)
T 1wfp_A 26 TRCLSCNKKVGVTGFKCRCGSTFCGTHR 53 (74)
T ss_dssp CBCSSSCCBCTTTCEECTTSCEECTTTC
T ss_pred ccchhhcCcccccceEeccCCEeccccC
Confidence 3455676665544455567777887663
No 84
>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=27.61 E-value=22 Score=18.29 Aligned_cols=25 Identities=20% Similarity=0.646 Sum_probs=11.0
Q ss_pred cccccccCcCcceEeeCCeeeeHHH
Q 034188 37 CSHCKGTLKLSNYSSMEGVLYCKPH 61 (102)
Q Consensus 37 C~~C~~~l~~~~~~~~~~~~~C~~~ 61 (102)
|..|++.+....|.-+-+..||..|
T Consensus 18 C~~C~kkvgl~~f~CrCg~~FC~~H 42 (64)
T 1wg2_A 18 CFSCNKKVGVMGFKCKCGSTFCGSH 42 (64)
T ss_dssp CTTTCCCCTTSCEECTTSCEECSSS
T ss_pred ChhhCCcccccCeEeecCCEecccC
Confidence 3444444332223334455566544
No 85
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=26.37 E-value=37 Score=15.68 Aligned_cols=9 Identities=22% Similarity=0.958 Sum_probs=4.7
Q ss_pred cccccccee
Q 034188 9 KCKVCEKTV 17 (102)
Q Consensus 9 ~C~~C~~~i 17 (102)
.|..|.+.+
T Consensus 7 ~C~IC~~~~ 15 (55)
T 2ecm_A 7 GCPICLEDI 15 (55)
T ss_dssp SCTTTCCCC
T ss_pred cCcccChhh
Confidence 455555544
No 86
>1wfl_A Zinc finger protein 216; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=25.74 E-value=23 Score=18.77 Aligned_cols=26 Identities=27% Similarity=0.750 Sum_probs=14.3
Q ss_pred ccccccccCcCcceEeeCCeeeeHHH
Q 034188 36 KCSHCKGTLKLSNYSSMEGVLYCKPH 61 (102)
Q Consensus 36 ~C~~C~~~l~~~~~~~~~~~~~C~~~ 61 (102)
+|..|++.+....|.-+-+..||..|
T Consensus 27 RC~~CrKkvgL~gf~CrCg~~FCs~H 52 (74)
T 1wfl_A 27 RCFMCRKKVGLTGFDCRCGNLFCGLH 52 (74)
T ss_dssp BCSSSCCBCGGGCEECTTSCEECSSS
T ss_pred cChhhCCcccccCeecCCCCEechhc
Confidence 45556665543344445666777555
No 87
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=24.72 E-value=69 Score=17.64 Aligned_cols=11 Identities=27% Similarity=0.863 Sum_probs=7.3
Q ss_pred cccccccccee
Q 034188 7 QQKCKVCEKTV 17 (102)
Q Consensus 7 ~~~C~~C~~~i 17 (102)
.+.|..|+..|
T Consensus 16 ~qiCqiCGD~V 26 (93)
T 1weo_A 16 GQFCEICGDQI 26 (93)
T ss_dssp SCBCSSSCCBC
T ss_pred CCccccccCcc
Confidence 35677777766
No 88
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.52 E-value=58 Score=16.13 Aligned_cols=36 Identities=8% Similarity=0.134 Sum_probs=18.0
Q ss_pred ccccccccCcCcceE--eeCCeeeeHHHHHHHh--CCCCC
Q 034188 36 KCSHCKGTLKLSNYS--SMEGVLYCKPHFEQLF--KESGN 71 (102)
Q Consensus 36 ~C~~C~~~l~~~~~~--~~~~~~~C~~~~~~~~--~~~c~ 71 (102)
.|..|...+...... ..=+..||..|..+.+ ...|.
T Consensus 17 ~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~~CP 56 (74)
T 2ep4_A 17 LCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCP 56 (74)
T ss_dssp BCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHCSBCT
T ss_pred CCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcCCcCC
Confidence 455555554432211 1356677777775433 23454
No 89
>2i5o_A DNA polymerase ETA; zinc finger, DNA polymerase,POL ETA, UBZ, ubiquitin-binding zinc finger, translesion synthesis, ubiquitin-binding domain; HET: DNA; NMR {Homo sapiens}
Probab=23.49 E-value=31 Score=15.78 Aligned_cols=12 Identities=25% Similarity=0.470 Sum_probs=8.6
Q ss_pred cccccccceeec
Q 034188 8 QKCKVCEKTVYP 19 (102)
Q Consensus 8 ~~C~~C~~~i~~ 19 (102)
..|..|++.|..
T Consensus 10 ~~C~~C~~~i~~ 21 (39)
T 2i5o_A 10 VPCEKCGSLVPV 21 (39)
T ss_dssp EECTTTCCEEEG
T ss_pred cccccccCcCCc
Confidence 468888888754
No 90
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=23.30 E-value=78 Score=16.74 Aligned_cols=34 Identities=12% Similarity=0.309 Sum_probs=21.5
Q ss_pred CcccccccccCcCcceEe-eCCeeeeHHHHHHHhCC
Q 034188 34 CFKCSHCKGTLKLSNYSS-MEGVLYCKPHFEQLFKE 68 (102)
Q Consensus 34 Cf~C~~C~~~l~~~~~~~-~~~~~~C~~~~~~~~~~ 68 (102)
-+.|..|...+.. .... .-|..||..|..+.+..
T Consensus 22 ~~~C~IC~~~~~~-p~~~~~CgH~fC~~Ci~~~~~~ 56 (99)
T 2y43_A 22 LLRCGICFEYFNI-AMIIPQCSHNYCSLCIRKFLSY 56 (99)
T ss_dssp HTBCTTTCSBCSS-EEECTTTCCEEEHHHHHHHHTT
T ss_pred CCCcccCChhhCC-cCEECCCCCHhhHHHHHHHHHC
Confidence 3567777666643 2333 46778898888766543
No 91
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=21.90 E-value=1e+02 Score=16.53 Aligned_cols=34 Identities=15% Similarity=0.249 Sum_probs=21.8
Q ss_pred CcccccccccCcCcceEe-eCCeeeeHHHHHHHhCC
Q 034188 34 CFKCSHCKGTLKLSNYSS-MEGVLYCKPHFEQLFKE 68 (102)
Q Consensus 34 Cf~C~~C~~~l~~~~~~~-~~~~~~C~~~~~~~~~~ 68 (102)
-+.|..|...+.. .... .-|..||..|....+..
T Consensus 15 ~~~C~IC~~~~~~-p~~~~~CgH~fC~~Ci~~~~~~ 49 (108)
T 2ckl_A 15 HLMCVLCGGYFID-ATTIIECLHSFCKTCIVRYLET 49 (108)
T ss_dssp GTBCTTTSSBCSS-EEEETTTCCEEEHHHHHHHHTS
T ss_pred cCCCccCChHHhC-cCEeCCCCChhhHHHHHHHHHh
Confidence 3567777666643 3333 57788898888766543
No 92
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=21.23 E-value=72 Score=17.61 Aligned_cols=9 Identities=22% Similarity=0.951 Sum_probs=4.4
Q ss_pred cccccccee
Q 034188 9 KCKVCEKTV 17 (102)
Q Consensus 9 ~C~~C~~~i 17 (102)
.|..|...+
T Consensus 24 ~C~IC~~~~ 32 (117)
T 1jm7_B 24 RCSRCTNIL 32 (117)
T ss_dssp SCSSSCSCC
T ss_pred CCCCCChHh
Confidence 355555444
No 93
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=21.21 E-value=23 Score=19.97 Aligned_cols=9 Identities=22% Similarity=0.741 Sum_probs=5.2
Q ss_pred cccccceee
Q 034188 10 CKVCEKTVY 18 (102)
Q Consensus 10 C~~C~~~i~ 18 (102)
|..|+.+|.
T Consensus 4 C~~C~~Pi~ 12 (101)
T 3vk6_A 4 CDKCGLPIK 12 (101)
T ss_dssp CTTTCSBCS
T ss_pred cCccCCCeE
Confidence 555666653
No 94
>4av1_A Poly [ADP-ribose] polymerase 1; transferase, PARP1, DNA-binding domain, DBD, DNA repair, CAN poly- ADP(ribosyl)ation; 3.10A {Homo sapiens} PDB: 2l30_A
Probab=20.55 E-value=21 Score=22.94 Aligned_cols=15 Identities=20% Similarity=0.494 Sum_probs=0.0
Q ss_pred ccccccccceeecCc
Q 034188 7 QQKCKVCEKTVYPVE 21 (102)
Q Consensus 7 ~~~C~~C~~~i~~~~ 21 (102)
...|..|.+.|..++
T Consensus 143 Ra~Ck~C~~kI~Kge 157 (223)
T 4av1_A 143 RSTCKGCMEKIEKGQ 157 (223)
T ss_dssp ---------------
T ss_pred CccccccCCccCCCC
Confidence 357999999887655
Done!