BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 034189
         (102 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
 pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
          Length = 768

 Score = 62.8 bits (151), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 39/96 (40%), Positives = 53/96 (55%)

Query: 7   NLGQNLLTGKIPPSLGRLSSLQTLSLLENGLNGTLPPELGKLSNLQKLRLQSNNLRGDLP 66
           +L  N L+G IP SLG LS L+ L L  N L G +P EL  +  L+ L L  N+L G++P
Sbjct: 424 HLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIP 483

Query: 67  KDYENLKNLTIFGIAGNYLSGRIPTFIAKWVNLYAL 102
               N  NL    ++ N L+G IP +I +  NL  L
Sbjct: 484 SGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAIL 519



 Score = 62.0 bits (149), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 38/92 (41%), Positives = 54/92 (58%)

Query: 8   LGQNLLTGKIPPSLGRLSSLQTLSLLENGLNGTLPPELGKLSNLQKLRLQSNNLRGDLPK 67
           L  N  TGKIPP+L   S L +L L  N L+GT+P  LG LS L+ L+L  N L G++P+
Sbjct: 401 LQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQ 460

Query: 68  DYENLKNLTIFGIAGNYLSGRIPTFIAKWVNL 99
           +   +K L    +  N L+G IP+ ++   NL
Sbjct: 461 ELMYVKTLETLILDFNDLTGEIPSGLSNCTNL 492



 Score = 54.3 bits (129), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 32/84 (38%), Positives = 48/84 (57%)

Query: 7   NLGQNLLTGKIPPSLGRLSSLQTLSLLENGLNGTLPPELGKLSNLQKLRLQSNNLRGDLP 66
           ++  N+L+G IP  +G +  L  L+L  N ++G++P E+G L  L  L L SN L G +P
Sbjct: 638 DMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIP 697

Query: 67  KDYENLKNLTIFGIAGNYLSGRIP 90
           +    L  LT   ++ N LSG IP
Sbjct: 698 QAMSALTMLTEIDLSNNNLSGPIP 721



 Score = 53.9 bits (128), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 34/94 (36%), Positives = 51/94 (54%), Gaps = 5/94 (5%)

Query: 11  NLLTGKIPPSLGRLSSLQTLSLLENGLNGTLPPELGKLSNLQKLRLQSNNLRGDLPKDYE 70
           N+L G+IP  L  + +L+TL L  N L G +P  L   +NL  + L +N L G++PK   
Sbjct: 452 NMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIG 511

Query: 71  NLKNLTIFGIAGNYLSGRIPTFIAK-----WVNL 99
            L+NL I  ++ N  SG IP  +       W++L
Sbjct: 512 RLENLAILKLSNNSFSGNIPAELGDCRSLIWLDL 545



 Score = 51.2 bits (121), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 48/85 (56%)

Query: 11  NLLTGKIPPSLGRLSSLQTLSLLENGLNGTLPPELGKLSNLQKLRLQSNNLRGDLPKDYE 70
           N LTG+IP  L   ++L  +SL  N L G +P  +G+L NL  L+L +N+  G++P +  
Sbjct: 476 NDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELG 535

Query: 71  NLKNLTIFGIAGNYLSGRIPTFIAK 95
           + ++L    +  N  +G IP  + K
Sbjct: 536 DCRSLIWLDLNTNLFNGTIPAAMFK 560



 Score = 47.0 bits (110), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 34/88 (38%), Positives = 48/88 (54%), Gaps = 3/88 (3%)

Query: 7   NLGQNLLTGKIPPSLGRLS-SLQTLSLLENGLNGTLPPELGK--LSNLQKLRLQSNNLRG 63
           +L  N  +G++P SL  LS SL TL L  N  +G + P L +   + LQ+L LQ+N   G
Sbjct: 349 DLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTG 408

Query: 64  DLPKDYENLKNLTIFGIAGNYLSGRIPT 91
            +P    N   L    ++ NYLSG IP+
Sbjct: 409 KIPPTLSNCSELVSLHLSFNYLSGTIPS 436



 Score = 46.6 bits (109), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 26/88 (29%), Positives = 45/88 (51%)

Query: 7   NLGQNLLTGKIPPSLGRLSSLQTLSLLENGLNGTLPPELGKLSNLQKLRLQSNNLRGDLP 66
           N+   +  G   P+     S+  L +  N L+G +P E+G +  L  L L  N++ G +P
Sbjct: 614 NITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIP 673

Query: 67  KDYENLKNLTIFGIAGNYLSGRIPTFIA 94
            +  +L+ L I  ++ N L GRIP  ++
Sbjct: 674 DEVGDLRGLNILDLSSNKLDGRIPQAMS 701



 Score = 45.8 bits (107), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 36/61 (59%)

Query: 7   NLGQNLLTGKIPPSLGRLSSLQTLSLLENGLNGTLPPELGKLSNLQKLRLQSNNLRGDLP 66
           NLG N ++G IP  +G L  L  L L  N L+G +P  +  L+ L ++ L +NNL G +P
Sbjct: 662 NLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 721

Query: 67  K 67
           +
Sbjct: 722 E 722



 Score = 44.7 bits (104), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 30/86 (34%), Positives = 43/86 (50%), Gaps = 4/86 (4%)

Query: 8   LGQNLLTGKIPPSLGRLSSLQTLSLLENGLNGTLPPELGKLSNLQKLRLQSNNLRGDLPK 67
           L  N LTG+IP  +GRL +L  L L  N  +G +P ELG   +L  L L +N   G +P 
Sbjct: 497 LSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPA 556

Query: 68  DYENLKNLTIFGIAGNYLSGRIPTFI 93
                       IA N+++G+   +I
Sbjct: 557 AMFKQSG----KIAANFIAGKRYVYI 578



 Score = 41.6 bits (96), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/86 (36%), Positives = 41/86 (47%), Gaps = 2/86 (2%)

Query: 7   NLGQNLLTGKIPPSLGR--LSSLQTLSLLENGLNGTLPPELGKLSNLQKLRLQSNNLRGD 64
           +L  N  +G I P+L +   ++LQ L L  NG  G +PP L   S L  L L  N L G 
Sbjct: 374 DLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGT 433

Query: 65  LPKDYENLKNLTIFGIAGNYLSGRIP 90
           +P    +L  L    +  N L G IP
Sbjct: 434 IPSSLGSLSKLRDLKLWLNMLEGEIP 459



 Score = 40.0 bits (92), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 32/85 (37%), Positives = 44/85 (51%), Gaps = 2/85 (2%)

Query: 8   LGQNLLTGKIPPSL-GRLSSLQTLSLLENGLNGTLPPELGKLSNLQKLRLQSNNLRGDLP 66
           L +N  TG+IP  L G   +L  L L  N   G +PP  G  S L+ L L SNN  G+LP
Sbjct: 276 LAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELP 335

Query: 67  KDY-ENLKNLTIFGIAGNYLSGRIP 90
            D    ++ L +  ++ N  SG +P
Sbjct: 336 MDTLLKMRGLKVLDLSFNEFSGELP 360



 Score = 35.0 bits (79), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 24/89 (26%), Positives = 41/89 (46%), Gaps = 3/89 (3%)

Query: 7   NLGQNLLTGKIPPSLGRLSSLQTLSLLENGLNGTLPPELGKLSNLQKLRLQSNNLRGDLP 66
           ++  N L+G    ++   + L+ L++  N   G +PP    L +LQ L L  N   G++P
Sbjct: 229 DISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIP 286

Query: 67  KDYEN-LKNLTIFGIAGNYLSGRIPTFIA 94
                    LT   ++GN+  G +P F  
Sbjct: 287 DFLSGACDTLTGLDLSGNHFYGAVPPFFG 315



 Score = 27.7 bits (60), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 19/75 (25%), Positives = 32/75 (42%)

Query: 21  LGRLSSLQTLSLLENGLNGTLPPELGKLSNLQKLRLQSNNLRGDLPKDYENLKNLTIFGI 80
           L RLS+    ++      G   P      ++  L +  N L G +PK+  ++  L I  +
Sbjct: 604 LNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNL 663

Query: 81  AGNYLSGRIPTFIAK 95
             N +SG IP  +  
Sbjct: 664 GHNDISGSIPDEVGD 678


>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
           Ectodomain
 pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
           Brassinolide
          Length = 772

 Score = 62.8 bits (151), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 39/96 (40%), Positives = 53/96 (55%)

Query: 7   NLGQNLLTGKIPPSLGRLSSLQTLSLLENGLNGTLPPELGKLSNLQKLRLQSNNLRGDLP 66
           +L  N L+G IP SLG LS L+ L L  N L G +P EL  +  L+ L L  N+L G++P
Sbjct: 421 HLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIP 480

Query: 67  KDYENLKNLTIFGIAGNYLSGRIPTFIAKWVNLYAL 102
               N  NL    ++ N L+G IP +I +  NL  L
Sbjct: 481 SGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAIL 516



 Score = 62.0 bits (149), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 38/92 (41%), Positives = 54/92 (58%)

Query: 8   LGQNLLTGKIPPSLGRLSSLQTLSLLENGLNGTLPPELGKLSNLQKLRLQSNNLRGDLPK 67
           L  N  TGKIPP+L   S L +L L  N L+GT+P  LG LS L+ L+L  N L G++P+
Sbjct: 398 LQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQ 457

Query: 68  DYENLKNLTIFGIAGNYLSGRIPTFIAKWVNL 99
           +   +K L    +  N L+G IP+ ++   NL
Sbjct: 458 ELMYVKTLETLILDFNDLTGEIPSGLSNCTNL 489



 Score = 54.3 bits (129), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 32/84 (38%), Positives = 48/84 (57%)

Query: 7   NLGQNLLTGKIPPSLGRLSSLQTLSLLENGLNGTLPPELGKLSNLQKLRLQSNNLRGDLP 66
           ++  N+L+G IP  +G +  L  L+L  N ++G++P E+G L  L  L L SN L G +P
Sbjct: 635 DMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIP 694

Query: 67  KDYENLKNLTIFGIAGNYLSGRIP 90
           +    L  LT   ++ N LSG IP
Sbjct: 695 QAMSALTMLTEIDLSNNNLSGPIP 718



 Score = 53.9 bits (128), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 34/94 (36%), Positives = 51/94 (54%), Gaps = 5/94 (5%)

Query: 11  NLLTGKIPPSLGRLSSLQTLSLLENGLNGTLPPELGKLSNLQKLRLQSNNLRGDLPKDYE 70
           N+L G+IP  L  + +L+TL L  N L G +P  L   +NL  + L +N L G++PK   
Sbjct: 449 NMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIG 508

Query: 71  NLKNLTIFGIAGNYLSGRIPTFIAK-----WVNL 99
            L+NL I  ++ N  SG IP  +       W++L
Sbjct: 509 RLENLAILKLSNNSFSGNIPAELGDCRSLIWLDL 542



 Score = 51.2 bits (121), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 48/85 (56%)

Query: 11  NLLTGKIPPSLGRLSSLQTLSLLENGLNGTLPPELGKLSNLQKLRLQSNNLRGDLPKDYE 70
           N LTG+IP  L   ++L  +SL  N L G +P  +G+L NL  L+L +N+  G++P +  
Sbjct: 473 NDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELG 532

Query: 71  NLKNLTIFGIAGNYLSGRIPTFIAK 95
           + ++L    +  N  +G IP  + K
Sbjct: 533 DCRSLIWLDLNTNLFNGTIPAAMFK 557



 Score = 47.0 bits (110), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 34/88 (38%), Positives = 48/88 (54%), Gaps = 3/88 (3%)

Query: 7   NLGQNLLTGKIPPSLGRLS-SLQTLSLLENGLNGTLPPELGK--LSNLQKLRLQSNNLRG 63
           +L  N  +G++P SL  LS SL TL L  N  +G + P L +   + LQ+L LQ+N   G
Sbjct: 346 DLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTG 405

Query: 64  DLPKDYENLKNLTIFGIAGNYLSGRIPT 91
            +P    N   L    ++ NYLSG IP+
Sbjct: 406 KIPPTLSNCSELVSLHLSFNYLSGTIPS 433



 Score = 47.0 bits (110), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 26/88 (29%), Positives = 45/88 (51%)

Query: 7   NLGQNLLTGKIPPSLGRLSSLQTLSLLENGLNGTLPPELGKLSNLQKLRLQSNNLRGDLP 66
           N+   +  G   P+     S+  L +  N L+G +P E+G +  L  L L  N++ G +P
Sbjct: 611 NITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIP 670

Query: 67  KDYENLKNLTIFGIAGNYLSGRIPTFIA 94
            +  +L+ L I  ++ N L GRIP  ++
Sbjct: 671 DEVGDLRGLNILDLSSNKLDGRIPQAMS 698



 Score = 45.8 bits (107), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 36/61 (59%)

Query: 7   NLGQNLLTGKIPPSLGRLSSLQTLSLLENGLNGTLPPELGKLSNLQKLRLQSNNLRGDLP 66
           NLG N ++G IP  +G L  L  L L  N L+G +P  +  L+ L ++ L +NNL G +P
Sbjct: 659 NLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 718

Query: 67  K 67
           +
Sbjct: 719 E 719



 Score = 45.1 bits (105), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 30/86 (34%), Positives = 43/86 (50%), Gaps = 4/86 (4%)

Query: 8   LGQNLLTGKIPPSLGRLSSLQTLSLLENGLNGTLPPELGKLSNLQKLRLQSNNLRGDLPK 67
           L  N LTG+IP  +GRL +L  L L  N  +G +P ELG   +L  L L +N   G +P 
Sbjct: 494 LSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPA 553

Query: 68  DYENLKNLTIFGIAGNYLSGRIPTFI 93
                       IA N+++G+   +I
Sbjct: 554 AMFKQSG----KIAANFIAGKRYVYI 575



 Score = 41.6 bits (96), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/86 (36%), Positives = 41/86 (47%), Gaps = 2/86 (2%)

Query: 7   NLGQNLLTGKIPPSLGR--LSSLQTLSLLENGLNGTLPPELGKLSNLQKLRLQSNNLRGD 64
           +L  N  +G I P+L +   ++LQ L L  NG  G +PP L   S L  L L  N L G 
Sbjct: 371 DLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGT 430

Query: 65  LPKDYENLKNLTIFGIAGNYLSGRIP 90
           +P    +L  L    +  N L G IP
Sbjct: 431 IPSSLGSLSKLRDLKLWLNMLEGEIP 456



 Score = 40.0 bits (92), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/85 (37%), Positives = 44/85 (51%), Gaps = 2/85 (2%)

Query: 8   LGQNLLTGKIPPSL-GRLSSLQTLSLLENGLNGTLPPELGKLSNLQKLRLQSNNLRGDLP 66
           L +N  TG+IP  L G   +L  L L  N   G +PP  G  S L+ L L SNN  G+LP
Sbjct: 273 LAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELP 332

Query: 67  KDY-ENLKNLTIFGIAGNYLSGRIP 90
            D    ++ L +  ++ N  SG +P
Sbjct: 333 MDTLLKMRGLKVLDLSFNEFSGELP 357



 Score = 35.0 bits (79), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 24/89 (26%), Positives = 41/89 (46%), Gaps = 3/89 (3%)

Query: 7   NLGQNLLTGKIPPSLGRLSSLQTLSLLENGLNGTLPPELGKLSNLQKLRLQSNNLRGDLP 66
           ++  N L+G    ++   + L+ L++  N   G +PP    L +LQ L L  N   G++P
Sbjct: 226 DISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIP 283

Query: 67  KDYEN-LKNLTIFGIAGNYLSGRIPTFIA 94
                    LT   ++GN+  G +P F  
Sbjct: 284 DFLSGACDTLTGLDLSGNHFYGAVPPFFG 312



 Score = 28.1 bits (61), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 19/75 (25%), Positives = 32/75 (42%)

Query: 21  LGRLSSLQTLSLLENGLNGTLPPELGKLSNLQKLRLQSNNLRGDLPKDYENLKNLTIFGI 80
           L RLS+    ++      G   P      ++  L +  N L G +PK+  ++  L I  +
Sbjct: 601 LNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNL 660

Query: 81  AGNYLSGRIPTFIAK 95
             N +SG IP  +  
Sbjct: 661 GHNDISGSIPDEVGD 675


>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
           Inhibiting Protein), A Leucine Rich Repeat Protein
           Involved In Plant Defense
          Length = 313

 Score = 52.4 bits (124), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 30/83 (36%), Positives = 44/83 (53%), Gaps = 1/83 (1%)

Query: 13  LTGKIPPSLGRLSSLQTLSLLENGLNGTLPPELGKLSNLQKLRLQSNNLRGDLPKDYENL 72
           ++G IP  L ++ +L TL    N L+GTLPP +  L NL  +    N + G +P  Y + 
Sbjct: 113 VSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSF 172

Query: 73  KNL-TIFGIAGNYLSGRIPTFIA 94
             L T   I+ N L+G+IP   A
Sbjct: 173 SKLFTSMTISRNRLTGKIPPTFA 195



 Score = 40.0 bits (92), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 2/82 (2%)

Query: 7   NLGQNLLTGKIPPSLGRLSSLQTLSLLENGLNGTLPPELGKLSNL-QKLRLQSNNLRGDL 65
           +   N L+G +PPS+  L +L  ++   N ++G +P   G  S L   + +  N L G +
Sbjct: 131 DFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKI 190

Query: 66  PKDYENLKNLTIFGIAGNYLSG 87
           P  + NL NL    ++ N L G
Sbjct: 191 PPTFANL-NLAFVDLSRNMLEG 211



 Score = 35.8 bits (81), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 34/106 (32%), Positives = 48/106 (45%), Gaps = 24/106 (22%)

Query: 8   LGQNLLTGKIPPSLGRLSSLQTLSLLENGLNG--------------------TLPPELGK 47
           + +N LTGKIPP+   L+ L  + L  N L G                    +L  +LGK
Sbjct: 181 ISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK 239

Query: 48  L---SNLQKLRLQSNNLRGDLPKDYENLKNLTIFGIAGNYLSGRIP 90
           +    NL  L L++N + G LP+    LK L    ++ N L G IP
Sbjct: 240 VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285



 Score = 30.0 bits (66), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 1/63 (1%)

Query: 21  LGRLSSLQTLSLLENGLNGTLPPELGKLSNLQKLRLQSNNLRGDLPKDYENLKNLTIFGI 80
           +G   +L  L L  N + GTLP  L +L  L  L +  NNL G++P+   NL+   +   
Sbjct: 240 VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAY 298

Query: 81  AGN 83
           A N
Sbjct: 299 ANN 301



 Score = 26.2 bits (56), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 20/63 (31%), Positives = 27/63 (42%), Gaps = 1/63 (1%)

Query: 41  LPPELGKLSNLQKLRLQS-NNLRGDLPKDYENLKNLTIFGIAGNYLSGRIPTFIAKWVNL 99
           +P  L  L  L  L +   NNL G +P     L  L    I    +SG IP F+++   L
Sbjct: 68  IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127

Query: 100 YAL 102
             L
Sbjct: 128 VTL 130


>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
           Antibody
 pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
           Antibody
          Length = 286

 Score = 32.7 bits (73), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 27/74 (36%), Positives = 34/74 (45%), Gaps = 4/74 (5%)

Query: 18  PPSLGRLSSLQTLSLLENGLNGTLPPELGKLSNLQKLRLQSNNLRGDLPKDYENLKNLTI 77
           P +   L  L TL L   GL    P     L+ LQ L LQ NNL+      + +L NLT 
Sbjct: 97  PTTFRGLGHLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNNLQALPDNTFRDLGNLTH 156

Query: 78  FGIAGNYLSGRIPT 91
             + GN    RIP+
Sbjct: 157 LFLHGN----RIPS 166


>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
           Domain Reveals A Convergent Recognition Scaffold
           Mediating Inhibition Of Myelination
          Length = 285

 Score = 32.7 bits (73), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 34/70 (48%), Gaps = 2/70 (2%)

Query: 18  PPSLGRLSSLQTLSLLENGLNGTLPPELGKLSNLQKLRLQSNNLRGDLPKD-YENLKNLT 76
           P +   L  L TL L   GL    P     L+ LQ L LQ N L+  LP D + +L NLT
Sbjct: 98  PATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQA-LPDDTFRDLGNLT 156

Query: 77  IFGIAGNYLS 86
              + GN +S
Sbjct: 157 HLFLHGNRIS 166


>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
          Length = 285

 Score = 32.3 bits (72), Expect = 0.063,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 34/70 (48%), Gaps = 2/70 (2%)

Query: 18  PPSLGRLSSLQTLSLLENGLNGTLPPELGKLSNLQKLRLQSNNLRGDLPKD-YENLKNLT 76
           P +   L  L TL L   GL    P     L+ LQ L LQ N L+  LP D + +L NLT
Sbjct: 97  PATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQA-LPDDTFRDLGNLT 155

Query: 77  IFGIAGNYLS 86
              + GN +S
Sbjct: 156 HLFLHGNRIS 165


>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
           Vlra.R2.1 In Complex With Hen Egg Lysozyme
          Length = 251

 Score = 30.4 bits (67), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 27/92 (29%), Positives = 41/92 (44%), Gaps = 2/92 (2%)

Query: 8   LGQNLLTGKIPPSLGRLSSLQTLSLLENGLNGTLPPELGKLSNLQKLRLQSNNLRGDLPK 67
           LG N L         RL+ L+ L L  N L         KL+NLQ L L +N L+     
Sbjct: 114 LGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHG 173

Query: 68  DYENLKNLTIFGIAGN-YLSGRIPT-FIAKWV 97
            ++ L  L    + GN +   R  T ++++W+
Sbjct: 174 AFDRLGKLQTITLFGNQFDCSRCETLYLSQWI 205


>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
 pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
 pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
 pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
          Length = 727

 Score = 30.0 bits (66), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 28/56 (50%), Gaps = 2/56 (3%)

Query: 7   NLGQNLLTGKIPPSLGRLSSLQTLSLLENGLNGTLPPELGKLSNLQKLRLQSNNLR 62
           +L  N LT  +P  LG    L+     +N +  TLP E G L NLQ L ++ N L 
Sbjct: 276 DLSHNRLTS-LPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLE 329



 Score = 25.4 bits (54), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 21/71 (29%), Positives = 28/71 (39%), Gaps = 22/71 (30%)

Query: 41  LPPELGKLSNLQKLRLQSN----------------------NLRGDLPKDYENLKNLTIF 78
           LP E+  LSNL+ L L  N                      N+   LP ++ NL NL   
Sbjct: 262 LPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFL 321

Query: 79  GIAGNYLSGRI 89
           G+ GN L  + 
Sbjct: 322 GVEGNPLEKQF 332


>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
           Hagfish Vlrb.61
          Length = 570

 Score = 30.0 bits (66), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 1/64 (1%)

Query: 7   NLGQNLLTGKIPPSLGRLSSLQTLSLLENGLNGTLPPELGKLSNLQKLRLQSNNLRGDLP 66
           +L Q  L    P +   LSSLQ L++  N L         +L++LQK+ L +N      P
Sbjct: 476 DLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 535

Query: 67  K-DY 69
           + DY
Sbjct: 536 RIDY 539


>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
           Receptors Of Jawless Vertebrates By Module Engineering
 pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
           Receptors Of Jawless Vertebrates By Module Engineering
          Length = 272

 Score = 29.6 bits (65), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 24/68 (35%), Positives = 35/68 (51%), Gaps = 2/68 (2%)

Query: 21  LGRLSSLQTLSLLENGLNGTLPPELGKLSNLQKLRLQSNNLRGDLPKD-YENLKNLTIFG 79
             +L++L+ L L+EN L         KL+NL  L L  N L+  LPK  ++ L NLT   
Sbjct: 105 FDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQS-LPKGVFDKLTNLTELD 163

Query: 80  IAGNYLSG 87
           ++ N L  
Sbjct: 164 LSYNQLQS 171



 Score = 26.2 bits (56), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 26/83 (31%), Positives = 36/83 (43%)

Query: 20  SLGRLSSLQTLSLLENGLNGTLPPELGKLSNLQKLRLQSNNLRGDLPKDYENLKNLTIFG 79
           +L  L++L  L L  N L         KL+NL++L L  N L+      ++ L NLT   
Sbjct: 80  ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLN 139

Query: 80  IAGNYLSGRIPTFIAKWVNLYAL 102
           +A N L         K  NL  L
Sbjct: 140 LAHNQLQSLPKGVFDKLTNLTEL 162


>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
           Binding Of A Tri-Acylated Lipopeptide
          Length = 520

 Score = 29.6 bits (65), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 24/86 (27%), Positives = 41/86 (47%), Gaps = 3/86 (3%)

Query: 7   NLGQNLLTGKIPPSLGRLSSLQTLSLLENGLN--GTLPPELGKLSNLQKLRLQSNNLRGD 64
           +   NLLT  +  + G L+ L+TL L  N L     +     ++ +LQ+L +  N++  D
Sbjct: 330 DFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYD 389

Query: 65  LPK-DYENLKNLTIFGIAGNYLSGRI 89
             K D    K+L    ++ N L+  I
Sbjct: 390 EKKGDCSWTKSLLSLNMSSNILTDTI 415



 Score = 28.5 bits (62), Expect = 0.96,   Method: Compositional matrix adjust.
 Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 1/54 (1%)

Query: 17  IPPSLGRLSSLQTLSLLENGLNGTLPPELGKLSNLQKLRLQSNNLRGDLPK-DY 69
           IP  + +L +LQ L++  N L         +L++LQK+ L +N      P+ DY
Sbjct: 436 IPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDY 489


>pdb|2XD2|A Chain A, The Crystal Structure Of Malx From Streptococcus
           Pneumoniae
 pdb|2XD2|B Chain B, The Crystal Structure Of Malx From Streptococcus
           Pneumoniae
 pdb|2XD3|A Chain A, The Crystal Structure Of Malx From Streptococcus
           Pneumoniae In Complex With Maltopentaose
          Length = 416

 Score = 29.3 bits (64), Expect = 0.54,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 5/46 (10%)

Query: 58  SNNLRGDLPKDYENLKNL---TIFGIAGNYLSGRIPTFIAKWVNLY 100
           + +L  D PK + +L+NL   + +  AG    G+   F+A W N Y
Sbjct: 148 NKDLVKDAPKTFADLENLAKDSKYAFAGE--DGKTTAFLADWTNFY 191


>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
           Receptors Of Jawless Vertebrates By Module Engineering
          Length = 279

 Score = 28.9 bits (63), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 24/68 (35%), Positives = 34/68 (50%), Gaps = 2/68 (2%)

Query: 21  LGRLSSLQTLSLLENGLNGTLPPELGKLSNLQKLRLQSNNLRGDLPKD-YENLKNLTIFG 79
             +L++L+ L L+EN L         KL+NL  L L  N L+  LPK  ++ L NLT   
Sbjct: 105 FDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLYLYHNQLQS-LPKGVFDKLTNLTRLD 163

Query: 80  IAGNYLSG 87
           +  N L  
Sbjct: 164 LDNNQLQS 171


>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
           Receptors A29
          Length = 270

 Score = 28.9 bits (63), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 20/63 (31%), Positives = 32/63 (50%)

Query: 23  RLSSLQTLSLLENGLNGTLPPELGKLSNLQKLRLQSNNLRGDLPKDYENLKNLTIFGIAG 82
            L +L+TL + +N L         +L NL +LRL  N L+   P+ +++L  LT   +  
Sbjct: 83  ELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGY 142

Query: 83  NYL 85
           N L
Sbjct: 143 NEL 145



 Score = 25.4 bits (54), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 25/83 (30%), Positives = 37/83 (44%), Gaps = 1/83 (1%)

Query: 8   LGQNLLTGKIPPSLGRLSSLQTLSLLENGLNGTLPPELGKLSNLQKLRLQSNNLRGDLPK 67
           L +N L    P     L+ L  LSL  N L         KL++L++LRL +N L+     
Sbjct: 116 LDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEG 175

Query: 68  DYENLKNLTIFGIAGNYLSGRIP 90
            ++ L  L    +  N L  R+P
Sbjct: 176 AFDKLTELKTLKLDNNQLK-RVP 197


>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
           2913 Ectodomain
 pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
           2913 Ectodomain
 pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
           2913 Ectodomain
 pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
           2913 Ectodomain
          Length = 174

 Score = 28.1 bits (61), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 26/92 (28%), Positives = 38/92 (41%), Gaps = 2/92 (2%)

Query: 8   LGQNLLTGKIPPSLGRLSSLQTLSLLENGLNGTLPPELGKLSNLQKLRLQSNNLRGDLPK 67
           L  N +T   P     L +LQ L    N L         KL+ L +L L  N+L+     
Sbjct: 40  LNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRG 99

Query: 68  DYENLKNLTIFGIAGN--YLSGRIPTFIAKWV 97
            ++NLK+LT   +  N      R   ++  WV
Sbjct: 100 AFDNLKSLTHIYLYNNPWDCECRDIMYLRNWV 131


>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
           Vlra.R5.1
 pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
           Vlra.R5.1
          Length = 251

 Score = 28.1 bits (61), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 26/92 (28%), Positives = 40/92 (43%), Gaps = 2/92 (2%)

Query: 8   LGQNLLTGKIPPSLGRLSSLQTLSLLENGLNGTLPPELGKLSNLQKLRLQSNNLRGDLPK 67
           LG N L         RL+ L+ L L  N L         KL+NLQ L L +N L+     
Sbjct: 114 LGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHG 173

Query: 68  DYENLKNLTIFGIAGN-YLSGRIPT-FIAKWV 97
            ++ L  L    + GN +   R    ++++W+
Sbjct: 174 AFDRLGKLQTITLFGNQFDCSRCEILYLSQWI 205


>pdb|4FUU|A Chain A, Crystal Structure Of A Leucine Aminopeptidase Precursor
           (Bt_2548) From Bacteroides Thetaiotaomicron Vpi-5482 At
           1.30 A Resolution
          Length = 309

 Score = 27.7 bits (60), Expect = 1.9,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 28/63 (44%), Gaps = 10/63 (15%)

Query: 49  SNLQKLRLQSNNLRGDLPKDYENLKNLTIFG----------IAGNYLSGRIPTFIAKWVN 98
           +N Q  ++  N  + D    Y  +KN   FG            GNYL+G++  F AK  N
Sbjct: 8   TNEQSEKVVVNVPQFDADSAYLYVKNQVDFGPRVPNTKEHVACGNYLAGKLEAFGAKVTN 67

Query: 99  LYA 101
            YA
Sbjct: 68  QYA 70


>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
 pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
 pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
 pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
          Length = 477

 Score = 26.9 bits (58), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 34/77 (44%)

Query: 7   NLGQNLLTGKIPPSLGRLSSLQTLSLLENGLNGTLPPELGKLSNLQKLRLQSNNLRGDLP 66
           +LG+N +             L+ L L EN ++   P     L NL+ L L+SN L+    
Sbjct: 38  DLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPL 97

Query: 67  KDYENLKNLTIFGIAGN 83
             +  L NLT   I+ N
Sbjct: 98  GVFTGLSNLTKLDISEN 114


>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
 pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
          Length = 603

 Score = 26.9 bits (58), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 39/77 (50%), Gaps = 3/77 (3%)

Query: 26  SLQTLSLLENGLNGTLPPELGKLSNLQKLRLQSNNLRG-DLPKDY--ENLKNLTIFGIAG 82
           SL+ L L++ G++      +  L NL+ L L SN++     PKD+   NLK L     A 
Sbjct: 103 SLKHLFLIQTGISNLEFIPVHNLENLESLYLGSNHISSIKFPKDFPARNLKVLDFQNNAI 162

Query: 83  NYLSGRIPTFIAKWVNL 99
           +Y+S      + + +NL
Sbjct: 163 HYISREDMRSLEQAINL 179


>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
          Length = 562

 Score = 26.6 bits (57), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 22/86 (25%), Positives = 38/86 (44%), Gaps = 3/86 (3%)

Query: 7   NLGQNLLTGKIPPSLGRLSSLQTLSLLENGLNGTLPPEL--GKLSNLQKLRLQSNNLRGD 64
           N  QN+ T  +      L  LQTL L  NGL       L    +S+L+ L +  N+L   
Sbjct: 359 NFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSH 418

Query: 65  -LPKDYENLKNLTIFGIAGNYLSGRI 89
              +     +++ +  ++ N L+G +
Sbjct: 419 AYDRTCAWAESILVLNLSSNMLTGSV 444



 Score = 25.8 bits (55), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 13/36 (36%), Positives = 21/36 (58%)

Query: 28 QTLSLLENGLNGTLPPELGKLSNLQKLRLQSNNLRG 63
          + LSL +N ++    P++  LS L+ LRL  N +R 
Sbjct: 55 KALSLSQNSISELRMPDISFLSELRVLRLSHNRIRS 90


>pdb|3KR9|A Chain A, Crystal Structure Of Streptococcus Pneumoniae Sp1610, A
           Putative Trna (M1a22) Methyltransferase
 pdb|3KU1|A Chain A, Crystal Structure Of Streptococcus Pneumoniae Sp1610, A
           Putative Trna (M1a22) Methyltransferase, In Complex With
           S- Adenosyl-L-Methionine
 pdb|3KU1|B Chain B, Crystal Structure Of Streptococcus Pneumoniae Sp1610, A
           Putative Trna (M1a22) Methyltransferase, In Complex With
           S- Adenosyl-L-Methionine
 pdb|3KU1|C Chain C, Crystal Structure Of Streptococcus Pneumoniae Sp1610, A
           Putative Trna (M1a22) Methyltransferase, In Complex With
           S- Adenosyl-L-Methionine
 pdb|3KU1|D Chain D, Crystal Structure Of Streptococcus Pneumoniae Sp1610, A
           Putative Trna (M1a22) Methyltransferase, In Complex With
           S- Adenosyl-L-Methionine
 pdb|3KU1|E Chain E, Crystal Structure Of Streptococcus Pneumoniae Sp1610, A
           Putative Trna (M1a22) Methyltransferase, In Complex With
           S- Adenosyl-L-Methionine
 pdb|3KU1|F Chain F, Crystal Structure Of Streptococcus Pneumoniae Sp1610, A
           Putative Trna (M1a22) Methyltransferase, In Complex With
           S- Adenosyl-L-Methionine
 pdb|3KU1|G Chain G, Crystal Structure Of Streptococcus Pneumoniae Sp1610, A
           Putative Trna (M1a22) Methyltransferase, In Complex With
           S- Adenosyl-L-Methionine
 pdb|3KU1|H Chain H, Crystal Structure Of Streptococcus Pneumoniae Sp1610, A
           Putative Trna (M1a22) Methyltransferase, In Complex With
           S- Adenosyl-L-Methionine
          Length = 225

 Score = 26.2 bits (56), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 12/21 (57%), Positives = 16/21 (76%)

Query: 45  LGKLSNLQKLRLQSNNLRGDL 65
           LGKL+N+++L LQ NN   DL
Sbjct: 106 LGKLANVERLILQPNNREDDL 126


>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
 pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
          Length = 440

 Score = 26.2 bits (56), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 20/68 (29%), Positives = 33/68 (48%)

Query: 19  PSLGRLSSLQTLSLLENGLNGTLPPELGKLSNLQKLRLQSNNLRGDLPKDYENLKNLTIF 78
           P+L  L  L  L L  N L+   P     L +LQKL +  + ++      ++NL++L   
Sbjct: 201 PNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEI 260

Query: 79  GIAGNYLS 86
            +A N L+
Sbjct: 261 NLAHNNLT 268


>pdb|2UVE|A Chain A, Structure Of Yersinia Enterocolitica Family 28
           Exopolygalacturonase
 pdb|2UVE|B Chain B, Structure Of Yersinia Enterocolitica Family 28
           Exopolygalacturonase
 pdb|2UVF|A Chain A, Structure Of Yersinia Enterocolitica Family 28
           Exopolygalacturonase In Complex With Digalaturonic Acid
 pdb|2UVF|B Chain B, Structure Of Yersinia Enterocolitica Family 28
           Exopolygalacturonase In Complex With Digalaturonic Acid
          Length = 608

 Score = 25.8 bits (55), Expect = 7.4,   Method: Composition-based stats.
 Identities = 12/43 (27%), Positives = 21/43 (48%)

Query: 37  LNGTLPPELGKLSNLQKLRLQSNNLRGDLPKDYENLKNLTIFG 79
           LN   P  +  L + +  ++    LRGD P  +  +KN+ + G
Sbjct: 561 LNNVTPTAISDLRDSEFNKVTFTELRGDTPWHFSEVKNVKVDG 603


>pdb|3PRX|B Chain B, Structure Of Complement C5 In Complex With Cvf And Ssl7
 pdb|3PRX|D Chain D, Structure Of Complement C5 In Complex With Cvf And Ssl7
 pdb|3PVM|B Chain B, Structure Of Complement C5 In Complex With Cvf
 pdb|3PVM|D Chain D, Structure Of Complement C5 In Complex With Cvf
          Length = 1642

 Score = 25.4 bits (54), Expect = 7.8,   Method: Composition-based stats.
 Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 5/41 (12%)

Query: 50  NLQKLRLQSNNLRGDLPKDYENLKNLTIF-----GIAGNYL 85
           N Q L +      GDLP++ +  K++T       G +GNYL
Sbjct: 405 NAQSLPITVRTNHGDLPRERQATKSMTAIAYQTQGGSGNYL 445


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.317    0.138    0.400 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,002,619
Number of Sequences: 62578
Number of extensions: 107327
Number of successful extensions: 400
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 288
Number of HSP's gapped (non-prelim): 111
length of query: 102
length of database: 14,973,337
effective HSP length: 67
effective length of query: 35
effective length of database: 10,780,611
effective search space: 377321385
effective search space used: 377321385
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 45 (21.9 bits)