Query 034189
Match_columns 102
No_of_seqs 109 out of 2342
Neff 11.2
Searched_HMMs 46136
Date Fri Mar 29 10:46:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034189.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/034189hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 99.6 4.6E-15 1E-19 100.8 7.1 99 3-101 477-575 (968)
2 PLN03150 hypothetical protein; 99.6 9.8E-15 2.1E-19 95.6 7.6 93 3-95 420-512 (623)
3 PLN00113 leucine-rich repeat r 99.6 6.3E-15 1.4E-19 100.2 6.4 96 5-100 144-239 (968)
4 KOG0617 Ras suppressor protein 99.4 5E-15 1.1E-19 82.7 -3.2 91 4-97 36-127 (264)
5 KOG0617 Ras suppressor protein 99.4 7.1E-15 1.5E-19 82.1 -3.3 95 4-101 59-154 (264)
6 PF13855 LRR_8: Leucine rich r 99.3 4.2E-12 9.2E-17 60.0 4.2 59 26-84 2-60 (61)
7 KOG4194 Membrane glycoprotein 99.3 1.1E-13 2.3E-18 89.1 -1.9 98 3-100 295-395 (873)
8 PF13855 LRR_8: Leucine rich r 99.2 1.7E-11 3.7E-16 57.9 3.8 59 3-61 3-61 (61)
9 KOG4194 Membrane glycoprotein 99.2 8.3E-13 1.8E-17 85.1 -1.0 99 3-101 271-369 (873)
10 PF14580 LRR_9: Leucine-rich r 99.2 3.8E-11 8.3E-16 67.6 4.6 79 5-86 46-126 (175)
11 PF14580 LRR_9: Leucine-rich r 99.2 3.1E-11 6.8E-16 68.0 3.4 94 3-101 21-117 (175)
12 PLN03150 hypothetical protein; 99.2 5.6E-11 1.2E-15 78.2 4.9 76 27-102 420-495 (623)
13 KOG0444 Cytoskeletal regulator 99.1 4.8E-12 1E-16 82.7 -3.2 94 4-100 225-319 (1255)
14 KOG0444 Cytoskeletal regulator 99.0 3.1E-11 6.8E-16 79.0 -0.6 81 3-86 105-186 (1255)
15 KOG0472 Leucine-rich repeat pr 99.0 5.4E-11 1.2E-15 74.0 0.0 94 5-101 439-532 (565)
16 KOG0472 Leucine-rich repeat pr 98.9 6.5E-11 1.4E-15 73.7 -2.0 51 47-100 250-300 (565)
17 KOG0618 Serine/threonine phosp 98.9 2.3E-10 4.9E-15 76.9 -0.4 79 4-86 386-465 (1081)
18 KOG1259 Nischarin, modulator o 98.9 5.8E-10 1.3E-14 67.6 0.6 79 3-85 286-364 (490)
19 KOG4237 Extracellular matrix p 98.8 1.7E-10 3.6E-15 71.5 -2.4 96 3-99 69-166 (498)
20 KOG0618 Serine/threonine phosp 98.8 1.6E-10 3.5E-15 77.6 -3.1 94 4-101 362-456 (1081)
21 KOG4658 Apoptotic ATPase [Sign 98.8 2.3E-09 5E-14 72.9 2.0 98 4-102 548-647 (889)
22 PRK15387 E3 ubiquitin-protein 98.7 1.4E-08 2.9E-13 68.4 3.7 64 26-94 403-466 (788)
23 PLN03210 Resistant to P. syrin 98.7 6.5E-08 1.4E-12 67.9 7.0 91 5-99 593-683 (1153)
24 KOG4579 Leucine-rich repeat (L 98.7 1.7E-09 3.6E-14 58.7 -0.9 80 4-86 56-136 (177)
25 KOG0532 Leucine-rich repeat (L 98.7 2.5E-09 5.3E-14 69.1 -0.4 93 5-102 147-239 (722)
26 PLN03210 Resistant to P. syrin 98.7 6.5E-08 1.4E-12 67.9 6.2 87 3-91 613-699 (1153)
27 KOG4237 Extracellular matrix p 98.7 8.7E-09 1.9E-13 64.2 1.8 79 21-99 270-348 (498)
28 PF12799 LRR_4: Leucine Rich r 98.6 6.1E-08 1.3E-12 42.7 3.1 36 50-86 2-37 (44)
29 KOG1259 Nischarin, modulator o 98.6 1.8E-08 4E-13 61.2 1.0 63 21-86 280-342 (490)
30 cd00116 LRR_RI Leucine-rich re 98.6 2.9E-08 6.3E-13 60.4 1.7 62 25-86 137-206 (319)
31 PRK15370 E3 ubiquitin-protein 98.5 2.6E-07 5.7E-12 62.4 6.0 53 4-62 202-254 (754)
32 PRK15387 E3 ubiquitin-protein 98.5 1.1E-07 2.5E-12 64.1 4.2 47 50-101 403-449 (788)
33 PF12799 LRR_4: Leucine Rich r 98.5 1.4E-07 3E-12 41.5 3.0 36 26-62 2-37 (44)
34 COG4886 Leucine-rich repeat (L 98.5 6.7E-08 1.4E-12 60.7 2.3 86 3-92 118-204 (394)
35 cd00116 LRR_RI Leucine-rich re 98.5 5E-08 1.1E-12 59.4 1.6 83 4-86 140-234 (319)
36 KOG4579 Leucine-rich repeat (L 98.5 7.5E-09 1.6E-13 56.2 -1.8 91 6-100 32-126 (177)
37 PRK15370 E3 ubiquitin-protein 98.5 2.8E-07 6.1E-12 62.2 4.5 74 4-86 223-296 (754)
38 KOG4658 Apoptotic ATPase [Sign 98.4 2.2E-07 4.7E-12 63.7 2.9 81 3-84 573-653 (889)
39 COG4886 Leucine-rich repeat (L 98.4 1.3E-07 2.9E-12 59.4 1.1 93 3-99 142-234 (394)
40 KOG0532 Leucine-rich repeat (L 98.3 4.4E-08 9.5E-13 63.6 -1.4 85 4-93 169-253 (722)
41 KOG1859 Leucine-rich repeat pr 98.1 1.4E-07 3E-12 63.1 -3.1 76 5-86 191-267 (1096)
42 KOG0531 Protein phosphatase 1, 98.1 1.2E-06 2.7E-11 55.6 1.0 80 3-87 97-176 (414)
43 KOG1644 U2-associated snRNP A' 98.0 1.7E-05 3.6E-10 45.9 4.4 79 5-86 46-126 (233)
44 KOG1644 U2-associated snRNP A' 98.0 1.5E-05 3.3E-10 46.0 3.8 94 5-101 23-117 (233)
45 KOG1859 Leucine-rich repeat pr 97.9 7.1E-07 1.5E-11 59.9 -2.2 90 6-101 169-258 (1096)
46 KOG2982 Uncharacterized conser 97.8 4.6E-06 1E-10 50.9 -0.4 82 4-85 74-158 (418)
47 KOG0531 Protein phosphatase 1, 97.8 8.1E-06 1.7E-10 52.0 0.6 77 7-87 78-154 (414)
48 KOG2123 Uncharacterized conser 97.5 5.3E-06 1.1E-10 50.3 -2.8 92 5-101 23-121 (388)
49 KOG3207 Beta-tubulin folding c 97.4 1.1E-05 2.4E-10 51.3 -2.0 79 5-83 150-232 (505)
50 KOG3207 Beta-tubulin folding c 97.4 3.2E-05 6.8E-10 49.3 -0.2 97 3-100 123-225 (505)
51 KOG2739 Leucine-rich acidic nu 97.4 0.00011 2.4E-09 43.8 1.8 64 21-86 61-129 (260)
52 PF00560 LRR_1: Leucine Rich R 97.3 0.00019 4.1E-09 26.6 1.5 12 51-62 2-13 (22)
53 PF00560 LRR_1: Leucine Rich R 97.2 0.00029 6.3E-09 26.1 1.6 22 74-96 1-22 (22)
54 KOG2739 Leucine-rich acidic nu 97.1 0.00035 7.6E-09 41.8 1.6 64 21-86 39-104 (260)
55 KOG1909 Ran GTPase-activating 96.8 0.0007 1.5E-08 42.2 1.7 83 5-87 189-284 (382)
56 PF13306 LRR_5: Leucine rich r 96.6 0.014 3.1E-07 30.9 5.7 76 5-83 16-91 (129)
57 KOG3665 ZYG-1-like serine/thre 96.6 0.0011 2.3E-08 45.2 1.5 57 24-82 147-204 (699)
58 KOG1909 Ran GTPase-activating 96.6 0.00043 9.4E-09 43.1 -0.4 41 46-86 182-226 (382)
59 PF13306 LRR_5: Leucine rich r 96.5 0.025 5.4E-07 30.0 6.2 92 4-100 38-129 (129)
60 KOG2123 Uncharacterized conser 96.4 9.5E-05 2E-09 45.0 -3.8 74 24-102 18-93 (388)
61 PF13504 LRR_7: Leucine rich r 96.3 0.0027 5.8E-08 21.9 1.2 11 51-61 3-13 (17)
62 KOG3665 ZYG-1-like serine/thre 96.3 0.002 4.3E-08 44.0 1.4 81 5-88 177-265 (699)
63 PRK15386 type III secretion pr 96.0 0.017 3.7E-07 37.3 4.4 58 3-67 54-112 (426)
64 KOG2982 Uncharacterized conser 95.2 0.0055 1.2E-07 38.0 0.1 63 24-86 70-134 (418)
65 KOG3864 Uncharacterized conser 95.0 0.0035 7.7E-08 36.5 -1.0 33 27-59 103-135 (221)
66 PF13516 LRR_6: Leucine Rich r 95.0 0.0087 1.9E-07 22.4 0.4 14 73-86 2-15 (24)
67 smart00370 LRR Leucine-rich re 94.5 0.043 9.4E-07 20.8 1.8 13 50-62 3-15 (26)
68 smart00369 LRR_TYP Leucine-ric 94.5 0.043 9.4E-07 20.8 1.8 13 50-62 3-15 (26)
69 KOG3864 Uncharacterized conser 94.4 0.0057 1.2E-07 35.7 -1.2 80 4-83 104-186 (221)
70 PRK15386 type III secretion pr 94.4 0.071 1.5E-06 34.6 3.5 56 21-83 48-104 (426)
71 KOG2120 SCF ubiquitin ligase, 94.3 0.00092 2E-08 41.3 -4.7 81 4-84 188-271 (419)
72 COG5238 RNA1 Ran GTPase-activa 93.3 0.042 9.2E-07 33.9 1.1 83 4-86 33-133 (388)
73 KOG0473 Leucine-rich repeat pr 92.7 0.0006 1.3E-08 40.7 -7.1 34 28-62 45-78 (326)
74 KOG0473 Leucine-rich repeat pr 92.3 0.00086 1.9E-08 40.1 -6.8 81 4-87 45-125 (326)
75 smart00364 LRR_BAC Leucine-ric 92.1 0.1 2.2E-06 20.1 1.0 17 50-67 3-19 (26)
76 KOG2120 SCF ubiquitin ligase, 90.8 0.094 2E-06 32.9 0.5 59 23-83 311-373 (419)
77 smart00365 LRR_SD22 Leucine-ri 88.4 0.43 9.3E-06 18.3 1.4 14 73-86 2-15 (26)
78 smart00368 LRR_RI Leucine rich 86.0 0.64 1.4E-05 18.0 1.3 13 26-38 3-15 (28)
79 KOG1947 Leucine rich repeat pr 84.6 0.46 1E-05 30.7 0.9 63 22-84 240-306 (482)
80 COG5238 RNA1 Ran GTPase-activa 84.4 4.9 0.00011 25.4 5.0 35 4-38 95-133 (388)
81 TIGR00864 PCC polycystin catio 72.0 2.6 5.5E-05 34.0 1.6 33 31-64 1-34 (2740)
82 smart00367 LRR_CC Leucine-rich 66.5 4.2 9.2E-05 15.1 1.0 10 50-59 3-12 (26)
83 KOG3763 mRNA export factor TAP 64.1 3.8 8.3E-05 28.0 1.0 63 24-87 217-284 (585)
84 TIGR00864 PCC polycystin catio 60.2 8 0.00017 31.6 2.2 34 7-40 1-34 (2740)
85 smart00446 LRRcap occurring C- 32.2 19 0.00041 13.8 0.3 12 45-56 9-20 (26)
86 KOG4341 F-box protein containi 24.3 23 0.0005 23.8 -0.2 62 24-85 345-413 (483)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.59 E-value=4.6e-15 Score=100.82 Aligned_cols=99 Identities=33% Similarity=0.547 Sum_probs=78.3
Q ss_pred eEEEEecCCcceecCChhhcCCCCCCEEEeecccceecCChhhcCCCCCcEEEcccceeceecChhhcCCCCCcEEEccc
Q 034189 3 SCRSNLGQNLLTGKIPPSLGRLSSLQTLSLLENGLNGTLPPELGKLSNLQKLRLQSNNLRGDLPKDYENLKNLTIFGIAG 82 (102)
Q Consensus 3 ~~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~p~~~~~~~~L~~l~l~~ 82 (102)
.+.|++++|.+++..|..+..+++|+.+++++|.+.+..|..+..+++|+.+++++|.+++..|..+..+++|+.+++++
T Consensus 477 L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~ 556 (968)
T PLN00113 477 LENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQ 556 (968)
T ss_pred ceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCC
Confidence 35677888888777777777788888888888888877777777888888888888888877777788888888888888
Q ss_pred ceeeeecchhhhccCCcee
Q 034189 83 NYLSGRIPTFIAKWVNLYA 101 (102)
Q Consensus 83 n~~~~~~~~~~~~l~~L~~ 101 (102)
|.+++.+|..+..+++|+.
T Consensus 557 N~l~~~~p~~l~~l~~L~~ 575 (968)
T PLN00113 557 NQLSGEIPKNLGNVESLVQ 575 (968)
T ss_pred CcccccCChhHhcCcccCE
Confidence 8888778877777776654
No 2
>PLN03150 hypothetical protein; Provisional
Probab=99.58 E-value=9.8e-15 Score=95.59 Aligned_cols=93 Identities=33% Similarity=0.623 Sum_probs=87.1
Q ss_pred eEEEEecCCcceecCChhhcCCCCCCEEEeecccceecCChhhcCCCCCcEEEcccceeceecChhhcCCCCCcEEEccc
Q 034189 3 SCRSNLGQNLLTGKIPPSLGRLSSLQTLSLLENGLNGTLPPELGKLSNLQKLRLQSNNLRGDLPKDYENLKNLTIFGIAG 82 (102)
Q Consensus 3 ~~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~p~~~~~~~~L~~l~l~~ 82 (102)
.+.|++++|.+.+.+|..+..+++|+.|++++|.+.+.+|..+..+++|+.+++++|++.+..|..+..+++|+.|++++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 45789999999999999999999999999999999989999999999999999999999999999999999999999999
Q ss_pred ceeeeecchhhhc
Q 034189 83 NYLSGRIPTFIAK 95 (102)
Q Consensus 83 n~~~~~~~~~~~~ 95 (102)
|.+++.+|..++.
T Consensus 500 N~l~g~iP~~l~~ 512 (623)
T PLN03150 500 NSLSGRVPAALGG 512 (623)
T ss_pred CcccccCChHHhh
Confidence 9999999987764
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.57 E-value=6.3e-15 Score=100.19 Aligned_cols=96 Identities=38% Similarity=0.571 Sum_probs=45.8
Q ss_pred EEEecCCcceecCChhhcCCCCCCEEEeecccceecCChhhcCCCCCcEEEcccceeceecChhhcCCCCCcEEEcccce
Q 034189 5 RSNLGQNLLTGKIPPSLGRLSSLQTLSLLENGLNGTLPPELGKLSNLQKLRLQSNNLRGDLPKDYENLKNLTIFGIAGNY 84 (102)
Q Consensus 5 ~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~p~~~~~~~~L~~l~l~~n~ 84 (102)
+|++++|.+++..|..+..+++|+.+++++|.+.+..|..+..+++|+++++++|++.+..|..+..+++|+.+++++|.
T Consensus 144 ~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~ 223 (968)
T PLN00113 144 TLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNN 223 (968)
T ss_pred EEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCc
Confidence 44444444444444445555555555555555444444444445555555555544444444444444444444444444
Q ss_pred eeeecchhhhccCCce
Q 034189 85 LSGRIPTFIAKWVNLY 100 (102)
Q Consensus 85 ~~~~~~~~~~~l~~L~ 100 (102)
+.+.+|..++++++|+
T Consensus 224 l~~~~p~~l~~l~~L~ 239 (968)
T PLN00113 224 LSGEIPYEIGGLTSLN 239 (968)
T ss_pred cCCcCChhHhcCCCCC
Confidence 4444444444444443
No 4
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.40 E-value=5e-15 Score=82.68 Aligned_cols=91 Identities=27% Similarity=0.484 Sum_probs=68.3
Q ss_pred EEEEecCCcceecCChhhcCCCCCCEEEeecccceecCChhhcCCCCCcEEEcccceeceecChhhcCCCCCcEEEcccc
Q 034189 4 CRSNLGQNLLTGKIPPSLGRLSSLQTLSLLENGLNGTLPPELGKLSNLQKLRLQSNNLRGDLPKDYENLKNLTIFGIAGN 83 (102)
Q Consensus 4 ~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~p~~~~~~~~L~~l~l~~n 83 (102)
+.|-+++|+++ .+|+.+..+.+|+.+++..|+++ ..|.++..++.|+.++++.|++. ..|+.|+.+|.|+++++.+|
T Consensus 36 TrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levldltyn 112 (264)
T KOG0617|consen 36 TRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLDLTYN 112 (264)
T ss_pred hhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhhcccc
Confidence 35677888888 67777788888888888888888 77888888888888888888877 77888888888888888776
Q ss_pred eeee-ecchhhhccC
Q 034189 84 YLSG-RIPTFIAKWV 97 (102)
Q Consensus 84 ~~~~-~~~~~~~~l~ 97 (102)
.+.. .+|..|..+.
T Consensus 113 nl~e~~lpgnff~m~ 127 (264)
T KOG0617|consen 113 NLNENSLPGNFFYMT 127 (264)
T ss_pred ccccccCCcchhHHH
Confidence 6543 2344444333
No 5
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.39 E-value=7.1e-15 Score=82.08 Aligned_cols=95 Identities=29% Similarity=0.436 Sum_probs=77.3
Q ss_pred EEEEecCCcceecCChhhcCCCCCCEEEeecccceecCChhhcCCCCCcEEEcccceece-ecChhhcCCCCCcEEEccc
Q 034189 4 CRSNLGQNLLTGKIPPSLGRLSSLQTLSLLENGLNGTLPPELGKLSNLQKLRLQSNNLRG-DLPKDYENLKNLTIFGIAG 82 (102)
Q Consensus 4 ~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~-~~p~~~~~~~~L~~l~l~~ 82 (102)
+.|++.+|+++ .+|..++.+++|+.+++..|++. ..|..|+.++.|+++|+.+|.+.. .+|..|-.+..|+.++++.
T Consensus 59 evln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~d 136 (264)
T KOG0617|consen 59 EVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGD 136 (264)
T ss_pred hhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcC
Confidence 46889999999 89999999999999999999999 889999999999999999987653 4466666666667777777
Q ss_pred ceeeeecchhhhccCCcee
Q 034189 83 NYLSGRIPTFIAKWVNLYA 101 (102)
Q Consensus 83 n~~~~~~~~~~~~l~~L~~ 101 (102)
|.+. .+|..++++++|+.
T Consensus 137 ndfe-~lp~dvg~lt~lqi 154 (264)
T KOG0617|consen 137 NDFE-ILPPDVGKLTNLQI 154 (264)
T ss_pred CCcc-cCChhhhhhcceeE
Confidence 7666 66666777766664
No 6
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=99.31 E-value=4.2e-12 Score=59.95 Aligned_cols=59 Identities=34% Similarity=0.530 Sum_probs=36.7
Q ss_pred CCCEEEeecccceecCChhhcCCCCCcEEEcccceeceecChhhcCCCCCcEEEcccce
Q 034189 26 SLQTLSLLENGLNGTLPPELGKLSNLQKLRLQSNNLRGDLPKDYENLKNLTIFGIAGNY 84 (102)
Q Consensus 26 ~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~p~~~~~~~~L~~l~l~~n~ 84 (102)
+|+.+++++|+++...+..+..+++|+++++++|.+....|..|..+++|+++++++|.
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 45666666666663333346666666666666666664445566666777777766664
No 7
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.31 E-value=1.1e-13 Score=89.06 Aligned_cols=98 Identities=20% Similarity=0.142 Sum_probs=68.4
Q ss_pred eEEEEecCCcceecCChhhcCCCCCCEEEeecccceecCChhhcCCCCCcEEEcccceeceecChhhcCCCCCcEEEccc
Q 034189 3 SCRSNLGQNLLTGKIPPSLGRLSSLQTLSLLENGLNGTLPPELGKLSNLQKLRLQSNNLRGDLPKDYENLKNLTIFGIAG 82 (102)
Q Consensus 3 ~~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~p~~~~~~~~L~~l~l~~ 82 (102)
++.|+++.|.|+..-++.|..+++|..+++++|+++...+.++..+..|+.+++++|+++......|..+.+|+.|+++.
T Consensus 295 L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~ 374 (873)
T KOG4194|consen 295 LEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRS 374 (873)
T ss_pred hhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcC
Confidence 35677888888866677778888888888888888844445577777777777777777755555667777777777777
Q ss_pred ceeeeecch---hhhccCCce
Q 034189 83 NYLSGRIPT---FIAKWVNLY 100 (102)
Q Consensus 83 n~~~~~~~~---~~~~l~~L~ 100 (102)
|.+++.+.+ .|..+++|+
T Consensus 375 N~ls~~IEDaa~~f~gl~~Lr 395 (873)
T KOG4194|consen 375 NELSWCIEDAAVAFNGLPSLR 395 (873)
T ss_pred CeEEEEEecchhhhccchhhh
Confidence 777766543 244455444
No 8
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=99.23 E-value=1.7e-11 Score=57.85 Aligned_cols=59 Identities=37% Similarity=0.473 Sum_probs=51.8
Q ss_pred eEEEEecCCcceecCChhhcCCCCCCEEEeecccceecCChhhcCCCCCcEEEccccee
Q 034189 3 SCRSNLGQNLLTGKIPPSLGRLSSLQTLSLLENGLNGTLPPELGKLSNLQKLRLQSNNL 61 (102)
Q Consensus 3 ~~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~~ 61 (102)
.++|++++|.++...+..|..+++|+.+++++|.++...+..+..+++|+++++++|++
T Consensus 3 L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 3 LESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp ESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 46899999999965557899999999999999999966566799999999999999874
No 9
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.23 E-value=8.3e-13 Score=85.07 Aligned_cols=99 Identities=20% Similarity=0.119 Sum_probs=71.5
Q ss_pred eEEEEecCCcceecCChhhcCCCCCCEEEeecccceecCChhhcCCCCCcEEEcccceeceecChhhcCCCCCcEEEccc
Q 034189 3 SCRSNLGQNLLTGKIPPSLGRLSSLQTLSLLENGLNGTLPPELGKLSNLQKLRLQSNNLRGDLPKDYENLKNLTIFGIAG 82 (102)
Q Consensus 3 ~~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~p~~~~~~~~L~~l~l~~ 82 (102)
+++|+++.|+++..-.+++.++.+|+.+++++|.+....++++..+++|..+++++|+++..-++.|..+.+|+.|+++.
T Consensus 271 me~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~ 350 (873)
T KOG4194|consen 271 MEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSH 350 (873)
T ss_pred cceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccc
Confidence 45677788877754556677788888888888888766677777788888888888888744445677778888888888
Q ss_pred ceeeeecchhhhccCCcee
Q 034189 83 NYLSGRIPTFIAKWVNLYA 101 (102)
Q Consensus 83 n~~~~~~~~~~~~l~~L~~ 101 (102)
|.+.......|..+++|+.
T Consensus 351 Nsi~~l~e~af~~lssL~~ 369 (873)
T KOG4194|consen 351 NSIDHLAEGAFVGLSSLHK 369 (873)
T ss_pred cchHHHHhhHHHHhhhhhh
Confidence 8877554455666666654
No 10
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.19 E-value=3.8e-11 Score=67.60 Aligned_cols=79 Identities=29% Similarity=0.421 Sum_probs=19.8
Q ss_pred EEEecCCcceecCChhhcCCCCCCEEEeecccceecCChhh-cCCCCCcEEEcccceeceec-ChhhcCCCCCcEEEccc
Q 034189 5 RSNLGQNLLTGKIPPSLGRLSSLQTLSLLENGLNGTLPPEL-GKLSNLQKLRLQSNNLRGDL-PKDYENLKNLTIFGIAG 82 (102)
Q Consensus 5 ~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~-~~~~~L~~l~l~~n~~~~~~-p~~~~~~~~L~~l~l~~ 82 (102)
.|++++|.++ .+. .+..++.|+.+++++|+++ .+++.+ ..+++|+.+++++|++.... -..+..+++|+.+++.+
T Consensus 46 ~L~Ls~N~I~-~l~-~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~ 122 (175)
T PF14580_consen 46 VLDLSNNQIT-KLE-GLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEG 122 (175)
T ss_dssp EEE-TTS--S---T-T----TT--EEE--SS----S-CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT
T ss_pred EEECCCCCCc-ccc-CccChhhhhhcccCCCCCC-ccccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccC
Confidence 4444444444 222 2334444444444444444 222222 23444445555444444211 12233444455555554
Q ss_pred ceee
Q 034189 83 NYLS 86 (102)
Q Consensus 83 n~~~ 86 (102)
|++.
T Consensus 123 NPv~ 126 (175)
T PF14580_consen 123 NPVC 126 (175)
T ss_dssp -GGG
T ss_pred Cccc
Confidence 4444
No 11
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.16 E-value=3.1e-11 Score=67.95 Aligned_cols=94 Identities=27% Similarity=0.341 Sum_probs=34.5
Q ss_pred eEEEEecCCcceecCChhhc-CCCCCCEEEeecccceecCChhhcCCCCCcEEEcccceeceecChhh-cCCCCCcEEEc
Q 034189 3 SCRSNLGQNLLTGKIPPSLG-RLSSLQTLSLLENGLNGTLPPELGKLSNLQKLRLQSNNLRGDLPKDY-ENLKNLTIFGI 80 (102)
Q Consensus 3 ~~~L~l~~n~~~~~~~~~~~-~l~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~p~~~-~~~~~L~~l~l 80 (102)
.++|++++|.|+ .+. .++ .+.+++.++++.|.++ .++ .+..++.|+.+++++|+++ ..+..+ ..+++|+.|++
T Consensus 21 ~~~L~L~~n~I~-~Ie-~L~~~l~~L~~L~Ls~N~I~-~l~-~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~~L~L 95 (175)
T PF14580_consen 21 LRELNLRGNQIS-TIE-NLGATLDKLEVLDLSNNQIT-KLE-GLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQELYL 95 (175)
T ss_dssp -----------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS----S-CHHHHHH-TT--EEE-
T ss_pred cccccccccccc-ccc-chhhhhcCCCEEECCCCCCc-ccc-CccChhhhhhcccCCCCCC-ccccchHHhCCcCCEEEC
Confidence 468999999999 443 344 5789999999999999 544 4778999999999999999 555444 46899999999
Q ss_pred ccceeeeec-chhhhccCCcee
Q 034189 81 AGNYLSGRI-PTFIAKWVNLYA 101 (102)
Q Consensus 81 ~~n~~~~~~-~~~~~~l~~L~~ 101 (102)
++|++...- -..+..+++|+.
T Consensus 96 ~~N~I~~l~~l~~L~~l~~L~~ 117 (175)
T PF14580_consen 96 SNNKISDLNELEPLSSLPKLRV 117 (175)
T ss_dssp TTS---SCCCCGGGGG-TT--E
T ss_pred cCCcCCChHHhHHHHcCCCcce
Confidence 999997421 144566777764
No 12
>PLN03150 hypothetical protein; Provisional
Probab=99.16 E-value=5.6e-11 Score=78.25 Aligned_cols=76 Identities=29% Similarity=0.599 Sum_probs=70.9
Q ss_pred CCEEEeecccceecCChhhcCCCCCcEEEcccceeceecChhhcCCCCCcEEEcccceeeeecchhhhccCCceeC
Q 034189 27 LQTLSLLENGLNGTLPPELGKLSNLQKLRLQSNNLRGDLPKDYENLKNLTIFGIAGNYLSGRIPTFIAKWVNLYAL 102 (102)
Q Consensus 27 L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~~~~~~~l~~L~~l 102 (102)
++.+++++|.+.+.+|..+..+++|+.+++++|.+.+.+|..+..+++|+.|++++|.+++.+|+.++++++|+.|
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L 495 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRIL 495 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEE
Confidence 6788999999998999999999999999999999998999999999999999999999999999999999988764
No 13
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.06 E-value=4.8e-12 Score=82.68 Aligned_cols=94 Identities=32% Similarity=0.386 Sum_probs=67.8
Q ss_pred EEEEecCCcceecCChhhcCCCCCCEEEeecccceecCChhhcCCCCCcEEEcccceeceecChhhcCCCCCcEEEcccc
Q 034189 4 CRSNLGQNLLTGKIPPSLGRLSSLQTLSLLENGLNGTLPPELGKLSNLQKLRLQSNNLRGDLPKDYENLKNLTIFGIAGN 83 (102)
Q Consensus 4 ~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~p~~~~~~~~L~~l~l~~n 83 (102)
++++++.|.+. .+|+.+-.+.+|+.+++++|.++ ...-......+++.+++++|+++ .+|.++++++.|+.|++.+|
T Consensus 225 ~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~N 301 (1255)
T KOG0444|consen 225 RDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNN 301 (1255)
T ss_pred hhccccccCCC-cchHHHhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccC
Confidence 45778888877 77887777888888888888887 44444455667777888888877 77777777788877777777
Q ss_pred eeeee-cchhhhccCCce
Q 034189 84 YLSGR-IPTFIAKWVNLY 100 (102)
Q Consensus 84 ~~~~~-~~~~~~~l~~L~ 100 (102)
++..+ +|..++++..|.
T Consensus 302 kL~FeGiPSGIGKL~~Le 319 (1255)
T KOG0444|consen 302 KLTFEGIPSGIGKLIQLE 319 (1255)
T ss_pred cccccCCccchhhhhhhH
Confidence 76543 456666665554
No 14
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.02 E-value=3.1e-11 Score=79.00 Aligned_cols=81 Identities=27% Similarity=0.365 Sum_probs=69.8
Q ss_pred eEEEEecCCcceecCChhhcCCCCCCEEEeecccceecCChh-hcCCCCCcEEEcccceeceecChhhcCCCCCcEEEcc
Q 034189 3 SCRSNLGQNLLTGKIPPSLGRLSSLQTLSLLENGLNGTLPPE-LGKLSNLQKLRLQSNNLRGDLPKDYENLKNLTIFGIA 81 (102)
Q Consensus 3 ~~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~-~~~~~~L~~l~l~~n~~~~~~p~~~~~~~~L~~l~l~ 81 (102)
++.|++++|++. ..|..+..-+++..+++++|.+. .+|.+ +-++.-|.++|+++|++. .+|.....+..|++|.++
T Consensus 105 Lt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls 181 (1255)
T KOG0444|consen 105 LTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLS 181 (1255)
T ss_pred ceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhhcC
Confidence 467899999998 88988888899999999999998 77876 667888899999999998 778888888889999999
Q ss_pred cceee
Q 034189 82 GNYLS 86 (102)
Q Consensus 82 ~n~~~ 86 (102)
+|++.
T Consensus 182 ~NPL~ 186 (1255)
T KOG0444|consen 182 NNPLN 186 (1255)
T ss_pred CChhh
Confidence 88775
No 15
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.01 E-value=5.4e-11 Score=74.02 Aligned_cols=94 Identities=33% Similarity=0.482 Sum_probs=44.6
Q ss_pred EEEecCCcceecCChhhcCCCCCCEEEeecccceecCChhhcCCCCCcEEEcccceeceecChhhcCCCCCcEEEcccce
Q 034189 5 RSNLGQNLLTGKIPPSLGRLSSLQTLSLLENGLNGTLPPELGKLSNLQKLRLQSNNLRGDLPKDYENLKNLTIFGIAGNY 84 (102)
Q Consensus 5 ~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~p~~~~~~~~L~~l~l~~n~ 84 (102)
-|++++|-+. .+|..++.+..|+.++++.|++. ..|.-+-....++.+-.+.|++....|+.+.++.+|+++|+..|.
T Consensus 439 ~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNd 516 (565)
T KOG0472|consen 439 FLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNND 516 (565)
T ss_pred eeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCc
Confidence 4556666665 56666666666666666665554 333222222222222222222321122334445555555555555
Q ss_pred eeeecchhhhccCCcee
Q 034189 85 LSGRIPTFIAKWVNLYA 101 (102)
Q Consensus 85 ~~~~~~~~~~~l~~L~~ 101 (102)
+. .+|..++++.+|+.
T Consensus 517 lq-~IPp~LgnmtnL~h 532 (565)
T KOG0472|consen 517 LQ-QIPPILGNMTNLRH 532 (565)
T ss_pred hh-hCChhhccccceeE
Confidence 55 55555555555544
No 16
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=98.91 E-value=6.5e-11 Score=73.67 Aligned_cols=51 Identities=25% Similarity=0.460 Sum_probs=32.8
Q ss_pred CCCCCcEEEcccceeceecChhhcCCCCCcEEEcccceeeeecchhhhccCCce
Q 034189 47 KLSNLQKLRLQSNNLRGDLPKDYENLKNLTIFGIAGNYLSGRIPTFIAKWVNLY 100 (102)
Q Consensus 47 ~~~~L~~l~l~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~~~~~~~l~~L~ 100 (102)
.+.++.++|++.|++. ..|+.++.+.+|..+|+++|.++ .+|-.++++ .|+
T Consensus 250 ~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is-~Lp~sLgnl-hL~ 300 (565)
T KOG0472|consen 250 HLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDIS-SLPYSLGNL-HLK 300 (565)
T ss_pred ccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccc-cCCcccccc-eee
Confidence 5666667777777766 66666666666777777777666 445555555 444
No 17
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.89 E-value=2.3e-10 Score=76.91 Aligned_cols=79 Identities=35% Similarity=0.525 Sum_probs=40.3
Q ss_pred EEEEecCCcceecCChh-hcCCCCCCEEEeecccceecCChhhcCCCCCcEEEcccceeceecChhhcCCCCCcEEEccc
Q 034189 4 CRSNLGQNLLTGKIPPS-LGRLSSLQTLSLLENGLNGTLPPELGKLSNLQKLRLQSNNLRGDLPKDYENLKNLTIFGIAG 82 (102)
Q Consensus 4 ~~L~l~~n~~~~~~~~~-~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~p~~~~~~~~L~~l~l~~ 82 (102)
+.|++++|.+. .+|.+ +.++..|+.|++++|+++ .+|+.+..+..|+++...+|++. .+| .+..+++|+.+|++.
T Consensus 386 KVLhLsyNrL~-~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~ 461 (1081)
T KOG0618|consen 386 KVLHLSYNRLN-SFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSC 461 (1081)
T ss_pred eeeeecccccc-cCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEeccc
Confidence 34555555555 34432 444555555555555555 44444444444444444444444 445 345556666666666
Q ss_pred ceee
Q 034189 83 NYLS 86 (102)
Q Consensus 83 n~~~ 86 (102)
|.++
T Consensus 462 N~L~ 465 (1081)
T KOG0618|consen 462 NNLS 465 (1081)
T ss_pred chhh
Confidence 6554
No 18
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.85 E-value=5.8e-10 Score=67.55 Aligned_cols=79 Identities=29% Similarity=0.315 Sum_probs=56.4
Q ss_pred eEEEEecCCcceecCChhhcCCCCCCEEEeecccceecCChhhcCCCCCcEEEcccceeceecChhhcCCCCCcEEEccc
Q 034189 3 SCRSNLGQNLLTGKIPPSLGRLSSLQTLSLLENGLNGTLPPELGKLSNLQKLRLQSNNLRGDLPKDYENLKNLTIFGIAG 82 (102)
Q Consensus 3 ~~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~p~~~~~~~~L~~l~l~~ 82 (102)
++++++++|.|+ .+.++..-.+.++.++++.|++. .+.+ +..+++|..+|+++|.+. .+..+..++.+++.+.+..
T Consensus 286 LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~-~v~n-La~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~ 361 (490)
T KOG1259|consen 286 LTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIR-TVQN-LAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQ 361 (490)
T ss_pred hhhccccccchh-hhhhhhhhccceeEEecccccee-eehh-hhhcccceEeecccchhH-hhhhhHhhhcCEeeeehhh
Confidence 356888888888 78888777888888888888888 3333 778888888888888776 4444444555555555555
Q ss_pred cee
Q 034189 83 NYL 85 (102)
Q Consensus 83 n~~ 85 (102)
|.+
T Consensus 362 N~i 364 (490)
T KOG1259|consen 362 NKI 364 (490)
T ss_pred hhH
Confidence 544
No 19
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.83 E-value=1.7e-10 Score=71.55 Aligned_cols=96 Identities=23% Similarity=0.313 Sum_probs=53.8
Q ss_pred eEEEEecCCcceecCChhhcCCCCCCEEEeecccceecCChhhcCCCCCcEEEccc-ceeceecC-hhhcCCCCCcEEEc
Q 034189 3 SCRSNLGQNLLTGKIPPSLGRLSSLQTLSLLENGLNGTLPPELGKLSNLQKLRLQS-NNLRGDLP-KDYENLKNLTIFGI 80 (102)
Q Consensus 3 ~~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~-n~~~~~~p-~~~~~~~~L~~l~l 80 (102)
++++.+..|+|+..-++.|..+.+|+.+|++.|.++...|+.|..+.++..+.+-+ |+++ .+| ..|.++.+++.|.+
T Consensus 69 tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~-~l~k~~F~gL~slqrLll 147 (498)
T KOG4237|consen 69 TVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT-DLPKGAFGGLSSLQRLLL 147 (498)
T ss_pred ceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh-hhhhhHhhhHHHHHHHhc
Confidence 45566666776644444566667777777777776655566666666655554333 6666 333 34555555555555
Q ss_pred ccceeeeecchhhhccCCc
Q 034189 81 AGNYLSGRIPTFIAKWVNL 99 (102)
Q Consensus 81 ~~n~~~~~~~~~~~~l~~L 99 (102)
.-|.+.-...+.|..+++|
T Consensus 148 Nan~i~Cir~~al~dL~~l 166 (498)
T KOG4237|consen 148 NANHINCIRQDALRDLPSL 166 (498)
T ss_pred ChhhhcchhHHHHHHhhhc
Confidence 5555443333444444444
No 20
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.81 E-value=1.6e-10 Score=77.59 Aligned_cols=94 Identities=33% Similarity=0.410 Sum_probs=77.4
Q ss_pred EEEEecCCcceecCChhhcCCCCCCEEEeecccceecCChh-hcCCCCCcEEEcccceeceecChhhcCCCCCcEEEccc
Q 034189 4 CRSNLGQNLLTGKIPPSLGRLSSLQTLSLLENGLNGTLPPE-LGKLSNLQKLRLQSNNLRGDLPKDYENLKNLTIFGIAG 82 (102)
Q Consensus 4 ~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~-~~~~~~L~~l~l~~n~~~~~~p~~~~~~~~L~~l~l~~ 82 (102)
+.|++.+|.++...-+.+.+.++|+.|++++|++. .+|+. +..+..|+.+++|+|+++ .+|.....++.|++|...+
T Consensus 362 q~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~-~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahs 439 (1081)
T KOG0618|consen 362 QELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLN-SFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHS 439 (1081)
T ss_pred HHHHHhcCcccccchhhhccccceeeeeecccccc-cCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcC
Confidence 45788889888666667788899999999999998 77775 778888999999999998 7788888888999998888
Q ss_pred ceeeeecchhhhccCCcee
Q 034189 83 NYLSGRIPTFIAKWVNLYA 101 (102)
Q Consensus 83 n~~~~~~~~~~~~l~~L~~ 101 (102)
|.+. ..| .+..++.|++
T Consensus 440 N~l~-~fP-e~~~l~qL~~ 456 (1081)
T KOG0618|consen 440 NQLL-SFP-ELAQLPQLKV 456 (1081)
T ss_pred Ccee-ech-hhhhcCcceE
Confidence 8888 667 5667777665
No 21
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.79 E-value=2.3e-09 Score=72.93 Aligned_cols=98 Identities=26% Similarity=0.295 Sum_probs=69.3
Q ss_pred EEEEecCCc--ceecCChhhcCCCCCCEEEeecccceecCChhhcCCCCCcEEEcccceeceecChhhcCCCCCcEEEcc
Q 034189 4 CRSNLGQNL--LTGKIPPSLGRLSSLQTLSLLENGLNGTLPPELGKLSNLQKLRLQSNNLRGDLPKDYENLKNLTIFGIA 81 (102)
Q Consensus 4 ~~L~l~~n~--~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~p~~~~~~~~L~~l~l~ 81 (102)
+.|-+.+|. +...-.+.|..++.|+.||+++|.--+.+|+.++.+.+|++++++++.+. .+|..+.++..|.+|++.
T Consensus 548 ~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~ 626 (889)
T KOG4658|consen 548 RTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLE 626 (889)
T ss_pred ceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheeccc
Confidence 344455554 33122233667888888888877655578888888888888888888887 778888888888888888
Q ss_pred cceeeeecchhhhccCCceeC
Q 034189 82 GNYLSGRIPTFIAKWVNLYAL 102 (102)
Q Consensus 82 ~n~~~~~~~~~~~~l~~L~~l 102 (102)
.+.....++.....+.+|++|
T Consensus 627 ~~~~l~~~~~i~~~L~~Lr~L 647 (889)
T KOG4658|consen 627 VTGRLESIPGILLELQSLRVL 647 (889)
T ss_pred cccccccccchhhhcccccEE
Confidence 776554556666667777653
No 22
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.72 E-value=1.4e-08 Score=68.43 Aligned_cols=64 Identities=31% Similarity=0.368 Sum_probs=41.2
Q ss_pred CCCEEEeecccceecCChhhcCCCCCcEEEcccceeceecChhhcCCCCCcEEEcccceeeeecchhhh
Q 034189 26 SLQTLSLLENGLNGTLPPELGKLSNLQKLRLQSNNLRGDLPKDYENLKNLTIFGIAGNYLSGRIPTFIA 94 (102)
Q Consensus 26 ~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~~~~~~ 94 (102)
+|+.+++++|.++ .+|.. ...|+.+++++|+++ .+|..+..+++++.+++++|++++..+..+.
T Consensus 403 ~L~~LdLS~N~Ls-sIP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L~ 466 (788)
T PRK15387 403 ELKELMVSGNRLT-SLPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALR 466 (788)
T ss_pred CCCEEEccCCcCC-CCCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHHH
Confidence 4555555555555 34432 234566777777776 6677777778888888888888876665553
No 23
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.72 E-value=6.5e-08 Score=67.88 Aligned_cols=91 Identities=18% Similarity=0.227 Sum_probs=38.8
Q ss_pred EEEecCCcceecCChhhcCCCCCCEEEeecccceecCChhhcCCCCCcEEEcccceeceecChhhcCCCCCcEEEcccce
Q 034189 5 RSNLGQNLLTGKIPPSLGRLSSLQTLSLLENGLNGTLPPELGKLSNLQKLRLQSNNLRGDLPKDYENLKNLTIFGIAGNY 84 (102)
Q Consensus 5 ~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~p~~~~~~~~L~~l~l~~n~ 84 (102)
.|++.++.+. .+|..+ ...+|+.+++.++.+. .++..+..+++|+.++++++......|. +..+++|+.|++.+|.
T Consensus 593 ~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~ 668 (1153)
T PLN03210 593 LLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCS 668 (1153)
T ss_pred EEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCC
Confidence 3444444443 344333 2344555555555444 3344444444555555544322213332 3344444444444443
Q ss_pred eeeecchhhhccCCc
Q 034189 85 LSGRIPTFIAKWVNL 99 (102)
Q Consensus 85 ~~~~~~~~~~~l~~L 99 (102)
....+|..++++++|
T Consensus 669 ~L~~lp~si~~L~~L 683 (1153)
T PLN03210 669 SLVELPSSIQYLNKL 683 (1153)
T ss_pred CccccchhhhccCCC
Confidence 333444444444433
No 24
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.69 E-value=1.7e-09 Score=58.66 Aligned_cols=80 Identities=25% Similarity=0.359 Sum_probs=57.2
Q ss_pred EEEEecCCcceecCChhhcCC-CCCCEEEeecccceecCChhhcCCCCCcEEEcccceeceecChhhcCCCCCcEEEccc
Q 034189 4 CRSNLGQNLLTGKIPPSLGRL-SSLQTLSLLENGLNGTLPPELGKLSNLQKLRLQSNNLRGDLPKDYENLKNLTIFGIAG 82 (102)
Q Consensus 4 ~~L~l~~n~~~~~~~~~~~~l-~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~p~~~~~~~~L~~l~l~~ 82 (102)
+..++++|.+. .+|+.|..- +.++.++++.|.++ .+|..+..++.|+.++++.|.+. ..|+.+..+.++..|+...
T Consensus 56 ~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~ 132 (177)
T KOG4579|consen 56 TKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPE 132 (177)
T ss_pred EEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCC
Confidence 34677788777 677765543 46777788888887 66777777888888888888777 6677666667777777766
Q ss_pred ceee
Q 034189 83 NYLS 86 (102)
Q Consensus 83 n~~~ 86 (102)
|...
T Consensus 133 na~~ 136 (177)
T KOG4579|consen 133 NARA 136 (177)
T ss_pred Cccc
Confidence 6554
No 25
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.69 E-value=2.5e-09 Score=69.13 Aligned_cols=93 Identities=31% Similarity=0.501 Sum_probs=52.1
Q ss_pred EEEecCCcceecCChhhcCCCCCCEEEeecccceecCChhhcCCCCCcEEEcccceeceecChhhcCCCCCcEEEcccce
Q 034189 5 RSNLGQNLLTGKIPPSLGRLSSLQTLSLLENGLNGTLPPELGKLSNLQKLRLQSNNLRGDLPKDYENLKNLTIFGIAGNY 84 (102)
Q Consensus 5 ~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~p~~~~~~~~L~~l~l~~n~ 84 (102)
.|-+++|+++ .+|+.++...+|..+|.++|.+. .+|..+..+.+|+.+++++|.+. .+|.....++ |..||++.|+
T Consensus 147 vli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~Lp-Li~lDfScNk 222 (722)
T KOG0532|consen 147 VLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSLP-LIRLDFSCNK 222 (722)
T ss_pred eEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCCc-eeeeecccCc
Confidence 3445555555 45555555555555555555555 44444445555555555555444 4455444333 5567777777
Q ss_pred eeeecchhhhccCCceeC
Q 034189 85 LSGRIPTFIAKWVNLYAL 102 (102)
Q Consensus 85 ~~~~~~~~~~~l~~L~~l 102 (102)
++ .+|-+|.+++.|++|
T Consensus 223 is-~iPv~fr~m~~Lq~l 239 (722)
T KOG0532|consen 223 IS-YLPVDFRKMRHLQVL 239 (722)
T ss_pred ee-ecchhhhhhhhheee
Confidence 77 667777777777653
No 26
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.68 E-value=6.5e-08 Score=67.87 Aligned_cols=87 Identities=20% Similarity=0.243 Sum_probs=58.1
Q ss_pred eEEEEecCCcceecCChhhcCCCCCCEEEeecccceecCChhhcCCCCCcEEEcccceeceecChhhcCCCCCcEEEccc
Q 034189 3 SCRSNLGQNLLTGKIPPSLGRLSSLQTLSLLENGLNGTLPPELGKLSNLQKLRLQSNNLRGDLPKDYENLKNLTIFGIAG 82 (102)
Q Consensus 3 ~~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~p~~~~~~~~L~~l~l~~ 82 (102)
+++|++.+|.+. .++..+..+++|+.++++++.....+|. +..+++|+.+++++|.....+|..+..+++|+.+++.+
T Consensus 613 L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~ 690 (1153)
T PLN03210 613 LVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSR 690 (1153)
T ss_pred CcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCC
Confidence 356788888877 6666667788888888877653335553 56677777888777644446677777777777777776
Q ss_pred ceeeeecch
Q 034189 83 NYLSGRIPT 91 (102)
Q Consensus 83 n~~~~~~~~ 91 (102)
|.....+|.
T Consensus 691 c~~L~~Lp~ 699 (1153)
T PLN03210 691 CENLEILPT 699 (1153)
T ss_pred CCCcCccCC
Confidence 543334554
No 27
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.68 E-value=8.7e-09 Score=64.18 Aligned_cols=79 Identities=20% Similarity=0.262 Sum_probs=41.4
Q ss_pred hcCCCCCCEEEeecccceecCChhhcCCCCCcEEEcccceeceecChhhcCCCCCcEEEcccceeeeecchhhhccCCc
Q 034189 21 LGRLSSLQTLSLLENGLNGTLPPELGKLSNLQKLRLQSNNLRGDLPKDYENLKNLTIFGIAGNYLSGRIPTFIAKWVNL 99 (102)
Q Consensus 21 ~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~~~~~~~l~~L 99 (102)
|..+++|+++++++|.+++.-+..|.....++.+.+..|++.......|.++..|+.|++.+|.++..-|..|..+.+|
T Consensus 270 f~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l 348 (498)
T KOG4237|consen 270 FKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSL 348 (498)
T ss_pred HhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEeccccccccee
Confidence 5555555555555555553333445555555555555555553333345555555555555555554444445444444
No 28
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.62 E-value=6.1e-08 Score=42.68 Aligned_cols=36 Identities=39% Similarity=0.666 Sum_probs=19.6
Q ss_pred CCcEEEcccceeceecChhhcCCCCCcEEEcccceee
Q 034189 50 NLQKLRLQSNNLRGDLPKDYENLKNLTIFGIAGNYLS 86 (102)
Q Consensus 50 ~L~~l~l~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~ 86 (102)
+|+++++++|+++ .+|..+..+++|+.+++++|.++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 4555666666655 44444555666666666666555
No 29
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.57 E-value=1.8e-08 Score=61.24 Aligned_cols=63 Identities=22% Similarity=0.401 Sum_probs=55.1
Q ss_pred hcCCCCCCEEEeecccceecCChhhcCCCCCcEEEcccceeceecChhhcCCCCCcEEEcccceee
Q 034189 21 LGRLSSLQTLSLLENGLNGTLPPELGKLSNLQKLRLQSNNLRGDLPKDYENLKNLTIFGIAGNYLS 86 (102)
Q Consensus 21 ~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~ 86 (102)
+.-++.|+.+|+++|.++ .+.+++.-.|.++++++++|++. .. +.+..+++|..+++++|.++
T Consensus 280 ~dTWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~-~v-~nLa~L~~L~~LDLS~N~Ls 342 (490)
T KOG1259|consen 280 ADTWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIR-TV-QNLAELPQLQLLDLSGNLLA 342 (490)
T ss_pred cchHhhhhhccccccchh-hhhhhhhhccceeEEecccccee-ee-hhhhhcccceEeecccchhH
Confidence 444678899999999999 88888999999999999999998 43 44889999999999999887
No 30
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.56 E-value=2.9e-08 Score=60.40 Aligned_cols=62 Identities=27% Similarity=0.398 Sum_probs=25.7
Q ss_pred CCCCEEEeecccceec----CChhhcCCCCCcEEEcccceecee----cChhhcCCCCCcEEEcccceee
Q 034189 25 SSLQTLSLLENGLNGT----LPPELGKLSNLQKLRLQSNNLRGD----LPKDYENLKNLTIFGIAGNYLS 86 (102)
Q Consensus 25 ~~L~~l~l~~n~~~~~----~~~~~~~~~~L~~l~l~~n~~~~~----~p~~~~~~~~L~~l~l~~n~~~ 86 (102)
++|+.+++++|.+++. ++..+..+..++.+++++|.+.+. ++..+...++|+.+++++|.+.
T Consensus 137 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~ 206 (319)
T cd00116 137 PALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLT 206 (319)
T ss_pred CCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccC
Confidence 4444445544444421 111233334455555555544421 1112223345555555555443
No 31
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.55 E-value=2.6e-07 Score=62.36 Aligned_cols=53 Identities=26% Similarity=0.417 Sum_probs=23.6
Q ss_pred EEEEecCCcceecCChhhcCCCCCCEEEeecccceecCChhhcCCCCCcEEEcccceec
Q 034189 4 CRSNLGQNLLTGKIPPSLGRLSSLQTLSLLENGLNGTLPPELGKLSNLQKLRLQSNNLR 62 (102)
Q Consensus 4 ~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~ 62 (102)
+.|++++|.++ .+|..+. .+|+.|++++|.++ .+|..+. .+|+.+++++|.+.
T Consensus 202 ~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~ 254 (754)
T PRK15370 202 TTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMELSINRIT 254 (754)
T ss_pred cEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEECcCCccC
Confidence 34555555555 4444322 34555555555554 3343221 23444444444443
No 32
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.54 E-value=1.1e-07 Score=64.13 Aligned_cols=47 Identities=23% Similarity=0.326 Sum_probs=26.3
Q ss_pred CCcEEEcccceeceecChhhcCCCCCcEEEcccceeeeecchhhhccCCcee
Q 034189 50 NLQKLRLQSNNLRGDLPKDYENLKNLTIFGIAGNYLSGRIPTFIAKWVNLYA 101 (102)
Q Consensus 50 ~L~~l~l~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~~~~~~~l~~L~~ 101 (102)
+|+.+++++|++. .+|.. ..+|+.|++++|.++ .+|..++++++|+.
T Consensus 403 ~L~~LdLS~N~Ls-sIP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~ 449 (788)
T PRK15387 403 ELKELMVSGNRLT-SLPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETT 449 (788)
T ss_pred CCCEEEccCCcCC-CCCcc---hhhhhhhhhccCccc-ccChHHhhccCCCe
Confidence 3445555555554 34432 234556666677766 56776776666654
No 33
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.53 E-value=1.4e-07 Score=41.53 Aligned_cols=36 Identities=42% Similarity=0.711 Sum_probs=18.8
Q ss_pred CCCEEEeecccceecCChhhcCCCCCcEEEcccceec
Q 034189 26 SLQTLSLLENGLNGTLPPELGKLSNLQKLRLQSNNLR 62 (102)
Q Consensus 26 ~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~ 62 (102)
+|+.+++++|.++ .+|..+..+++|+.+++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 4555555555555 44444555555555555555554
No 34
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.51 E-value=6.7e-08 Score=60.69 Aligned_cols=86 Identities=40% Similarity=0.620 Sum_probs=62.2
Q ss_pred eEEEEecCCcceecCChhhcCCC-CCCEEEeecccceecCChhhcCCCCCcEEEcccceeceecChhhcCCCCCcEEEcc
Q 034189 3 SCRSNLGQNLLTGKIPPSLGRLS-SLQTLSLLENGLNGTLPPELGKLSNLQKLRLQSNNLRGDLPKDYENLKNLTIFGIA 81 (102)
Q Consensus 3 ~~~L~l~~n~~~~~~~~~~~~l~-~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~p~~~~~~~~L~~l~l~ 81 (102)
...+++.+|.++ .++....... +++.++++.|.+. .+|..+..++.|+.++++.|++. ..|......+.+..++++
T Consensus 118 l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ls 194 (394)
T COG4886 118 LTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLS 194 (394)
T ss_pred eeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhheecc
Confidence 456777788877 6666555563 7888888888887 55566777888888888888887 555554467778888888
Q ss_pred cceeeeecchh
Q 034189 82 GNYLSGRIPTF 92 (102)
Q Consensus 82 ~n~~~~~~~~~ 92 (102)
+|.+. .+|..
T Consensus 195 ~N~i~-~l~~~ 204 (394)
T COG4886 195 GNKIS-DLPPE 204 (394)
T ss_pred CCccc-cCchh
Confidence 88877 55554
No 35
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.50 E-value=5e-08 Score=59.37 Aligned_cols=83 Identities=30% Similarity=0.469 Sum_probs=43.1
Q ss_pred EEEEecCCcceec----CChhhcCCCCCCEEEeecccceec----CChhhcCCCCCcEEEcccceecee----cChhhcC
Q 034189 4 CRSNLGQNLLTGK----IPPSLGRLSSLQTLSLLENGLNGT----LPPELGKLSNLQKLRLQSNNLRGD----LPKDYEN 71 (102)
Q Consensus 4 ~~L~l~~n~~~~~----~~~~~~~l~~L~~l~l~~n~~~~~----~~~~~~~~~~L~~l~l~~n~~~~~----~p~~~~~ 71 (102)
++|++++|.+++. +...+..+.+++.+++++|.+++. ++..+...+.|+.+++++|.+... ++..+..
T Consensus 140 ~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~ 219 (319)
T cd00116 140 EKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLAS 219 (319)
T ss_pred eEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcc
Confidence 5566666666621 223344555666666666666531 122233445666666666655422 1222334
Q ss_pred CCCCcEEEcccceee
Q 034189 72 LKNLTIFGIAGNYLS 86 (102)
Q Consensus 72 ~~~L~~l~l~~n~~~ 86 (102)
+++|+++++++|.++
T Consensus 220 ~~~L~~L~ls~n~l~ 234 (319)
T cd00116 220 LKSLEVLNLGDNNLT 234 (319)
T ss_pred cCCCCEEecCCCcCc
Confidence 555666666666555
No 36
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.49 E-value=7.5e-09 Score=56.19 Aligned_cols=91 Identities=25% Similarity=0.390 Sum_probs=70.4
Q ss_pred EEecCCcceecCCh---hhcCCCCCCEEEeecccceecCChhhc-CCCCCcEEEcccceeceecChhhcCCCCCcEEEcc
Q 034189 6 SNLGQNLLTGKIPP---SLGRLSSLQTLSLLENGLNGTLPPELG-KLSNLQKLRLQSNNLRGDLPKDYENLKNLTIFGIA 81 (102)
Q Consensus 6 L~l~~n~~~~~~~~---~~~~l~~L~~l~l~~n~~~~~~~~~~~-~~~~L~~l~l~~n~~~~~~p~~~~~~~~L~~l~l~ 81 (102)
++++.|++- .+++ -.....+|..+++++|.+. .+|+.+. .++.++.+++.+|.+. ..|..+..++.|+.+++.
T Consensus 32 ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~ 108 (177)
T KOG4579|consen 32 LDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLR 108 (177)
T ss_pred cccccchhh-HHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccc
Confidence 566667665 3333 2555677888999999999 7787654 4558899999999999 789889999999999999
Q ss_pred cceeeeecchhhhccCCce
Q 034189 82 GNYLSGRIPTFIAKWVNLY 100 (102)
Q Consensus 82 ~n~~~~~~~~~~~~l~~L~ 100 (102)
.|++. ..|+.+..+.+|.
T Consensus 109 ~N~l~-~~p~vi~~L~~l~ 126 (177)
T KOG4579|consen 109 FNPLN-AEPRVIAPLIKLD 126 (177)
T ss_pred cCccc-cchHHHHHHHhHH
Confidence 99998 5567666555543
No 37
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.46 E-value=2.8e-07 Score=62.21 Aligned_cols=74 Identities=30% Similarity=0.408 Sum_probs=48.3
Q ss_pred EEEEecCCcceecCChhhcCCCCCCEEEeecccceecCChhhcCCCCCcEEEcccceeceecChhhcCCCCCcEEEcccc
Q 034189 4 CRSNLGQNLLTGKIPPSLGRLSSLQTLSLLENGLNGTLPPELGKLSNLQKLRLQSNNLRGDLPKDYENLKNLTIFGIAGN 83 (102)
Q Consensus 4 ~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~p~~~~~~~~L~~l~l~~n 83 (102)
++|++++|.++ .+|..+. .+|+.+++++|.+. .+|..+. .+|+.+++++|++. .+|..+ ..+|+.|++++|
T Consensus 223 ~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l--~~sL~~L~Ls~N 293 (754)
T PRK15370 223 KTLYANSNQLT-SIPATLP--DTIQEMELSINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENL--PEELRYLSVYDN 293 (754)
T ss_pred CEEECCCCccc-cCChhhh--ccccEEECcCCccC-cCChhHh--CCCCEEECcCCccC-cccccc--CCCCcEEECCCC
Confidence 56778888877 5665543 36777777777777 5665543 35777777777776 455543 246777777777
Q ss_pred eee
Q 034189 84 YLS 86 (102)
Q Consensus 84 ~~~ 86 (102)
.++
T Consensus 294 ~Lt 296 (754)
T PRK15370 294 SIR 296 (754)
T ss_pred ccc
Confidence 666
No 38
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.40 E-value=2.2e-07 Score=63.70 Aligned_cols=81 Identities=27% Similarity=0.410 Sum_probs=70.4
Q ss_pred eEEEEecCCcceecCChhhcCCCCCCEEEeecccceecCChhhcCCCCCcEEEcccceeceecChhhcCCCCCcEEEccc
Q 034189 3 SCRSNLGQNLLTGKIPPSLGRLSSLQTLSLLENGLNGTLPPELGKLSNLQKLRLQSNNLRGDLPKDYENLKNLTIFGIAG 82 (102)
Q Consensus 3 ~~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~p~~~~~~~~L~~l~l~~ 82 (102)
++.||+++|.--+.+|..++.+-+|++|++++..+. .+|..+..+..|.+||+.++......|.....+.+|+++.+..
T Consensus 573 LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~ 651 (889)
T KOG4658|consen 573 LRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPR 651 (889)
T ss_pred eEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeec
Confidence 578999998777799999999999999999999999 8899999999999999998865435566677799999999976
Q ss_pred ce
Q 034189 83 NY 84 (102)
Q Consensus 83 n~ 84 (102)
..
T Consensus 652 s~ 653 (889)
T KOG4658|consen 652 SA 653 (889)
T ss_pred cc
Confidence 54
No 39
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.36 E-value=1.3e-07 Score=59.36 Aligned_cols=93 Identities=31% Similarity=0.464 Sum_probs=66.6
Q ss_pred eEEEEecCCcceecCChhhcCCCCCCEEEeecccceecCChhhcCCCCCcEEEcccceeceecChhhcCCCCCcEEEccc
Q 034189 3 SCRSNLGQNLLTGKIPPSLGRLSSLQTLSLLENGLNGTLPPELGKLSNLQKLRLQSNNLRGDLPKDYENLKNLTIFGIAG 82 (102)
Q Consensus 3 ~~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~p~~~~~~~~L~~l~l~~ 82 (102)
.++|++++|.+. .+|..+..++.|+.++++.|.+. .++......+.+..+++++|++. .+|........|.++.+++
T Consensus 142 L~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~ 218 (394)
T COG4886 142 LKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSN 218 (394)
T ss_pred cccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcC
Confidence 457888888888 66666778888999999999988 66665557778888888888888 6666544555577888887
Q ss_pred ceeeeecchhhhccCCc
Q 034189 83 NYLSGRIPTFIAKWVNL 99 (102)
Q Consensus 83 n~~~~~~~~~~~~l~~L 99 (102)
|... ..+..+.++.++
T Consensus 219 N~~~-~~~~~~~~~~~l 234 (394)
T COG4886 219 NSII-ELLSSLSNLKNL 234 (394)
T ss_pred Ccce-ecchhhhhcccc
Confidence 7543 333444444444
No 40
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.34 E-value=4.4e-08 Score=63.59 Aligned_cols=85 Identities=31% Similarity=0.554 Sum_probs=73.6
Q ss_pred EEEEecCCcceecCChhhcCCCCCCEEEeecccceecCChhhcCCCCCcEEEcccceeceecChhhcCCCCCcEEEcccc
Q 034189 4 CRSNLGQNLLTGKIPPSLGRLSSLQTLSLLENGLNGTLPPELGKLSNLQKLRLQSNNLRGDLPKDYENLKNLTIFGIAGN 83 (102)
Q Consensus 4 ~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~p~~~~~~~~L~~l~l~~n 83 (102)
..|+.+.|.+. .+|..++++.+|+.+.+..|.+. .+|.....++ |..+|++.|++. .+|-.|.++..|+++-|.+|
T Consensus 169 ~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~Lp-Li~lDfScNkis-~iPv~fr~m~~Lq~l~LenN 244 (722)
T KOG0532|consen 169 AHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSLP-LIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENN 244 (722)
T ss_pred HHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCCc-eeeeecccCcee-ecchhhhhhhhheeeeeccC
Confidence 35788899988 88888999999999999999998 7788777554 889999999999 88999999999999999999
Q ss_pred eeeeecchhh
Q 034189 84 YLSGRIPTFI 93 (102)
Q Consensus 84 ~~~~~~~~~~ 93 (102)
.+. .-|.-+
T Consensus 245 PLq-SPPAqI 253 (722)
T KOG0532|consen 245 PLQ-SPPAQI 253 (722)
T ss_pred CCC-CChHHH
Confidence 998 555544
No 41
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.09 E-value=1.4e-07 Score=63.13 Aligned_cols=76 Identities=38% Similarity=0.460 Sum_probs=39.4
Q ss_pred EEEecCCcceecCChhhcCCCCCCEEEeecccceecCChh-hcCCCCCcEEEcccceeceecChhhcCCCCCcEEEcccc
Q 034189 5 RSNLGQNLLTGKIPPSLGRLSSLQTLSLLENGLNGTLPPE-LGKLSNLQKLRLQSNNLRGDLPKDYENLKNLTIFGIAGN 83 (102)
Q Consensus 5 ~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~-~~~~~~L~~l~l~~n~~~~~~p~~~~~~~~L~~l~l~~n 83 (102)
.|++++|+++ .+. .+..+++|..||+++|++. .+|.- ...+ .|..+.+++|.++ .+ ..+.++.+|..||+++|
T Consensus 191 ~LnLshNk~~-~v~-~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc-~L~~L~lrnN~l~-tL-~gie~LksL~~LDlsyN 264 (1096)
T KOG1859|consen 191 SLNLSHNKFT-KVD-NLRRLPKLKHLDLSYNCLR-HVPQLSMVGC-KLQLLNLRNNALT-TL-RGIENLKSLYGLDLSYN 264 (1096)
T ss_pred hhccchhhhh-hhH-HHHhcccccccccccchhc-cccccchhhh-hheeeeecccHHH-hh-hhHHhhhhhhccchhHh
Confidence 4556666655 222 3445566666666666655 33331 1122 2555666666555 22 33455566666666666
Q ss_pred eee
Q 034189 84 YLS 86 (102)
Q Consensus 84 ~~~ 86 (102)
.+.
T Consensus 265 ll~ 267 (1096)
T KOG1859|consen 265 LLS 267 (1096)
T ss_pred hhh
Confidence 554
No 42
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.07 E-value=1.2e-06 Score=55.58 Aligned_cols=80 Identities=30% Similarity=0.370 Sum_probs=55.9
Q ss_pred eEEEEecCCcceecCChhhcCCCCCCEEEeecccceecCChhhcCCCCCcEEEcccceeceecChhhcCCCCCcEEEccc
Q 034189 3 SCRSNLGQNLLTGKIPPSLGRLSSLQTLSLLENGLNGTLPPELGKLSNLQKLRLQSNNLRGDLPKDYENLKNLTIFGIAG 82 (102)
Q Consensus 3 ~~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~p~~~~~~~~L~~l~l~~ 82 (102)
.+.+++.+|.+. .+...+..+++|+.+++++|.++ .+ ..+..+..|+.+++++|.+. .+ ..+..+..++.+++++
T Consensus 97 l~~l~l~~n~i~-~i~~~l~~~~~L~~L~ls~N~I~-~i-~~l~~l~~L~~L~l~~N~i~-~~-~~~~~l~~L~~l~l~~ 171 (414)
T KOG0531|consen 97 LEALDLYDNKIE-KIENLLSSLVNLQVLDLSFNKIT-KL-EGLSTLTLLKELNLSGNLIS-DI-SGLESLKSLKLLDLSY 171 (414)
T ss_pred eeeeeccccchh-hcccchhhhhcchheeccccccc-cc-cchhhccchhhheeccCcch-hc-cCCccchhhhcccCCc
Confidence 356778888887 44443567888888888888888 32 23455666888888888877 33 3455577888888888
Q ss_pred ceeee
Q 034189 83 NYLSG 87 (102)
Q Consensus 83 n~~~~ 87 (102)
|.+..
T Consensus 172 n~i~~ 176 (414)
T KOG0531|consen 172 NRIVD 176 (414)
T ss_pred chhhh
Confidence 87773
No 43
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.99 E-value=1.7e-05 Score=45.89 Aligned_cols=79 Identities=28% Similarity=0.305 Sum_probs=49.3
Q ss_pred EEEecCCcceecCChhhcCCCCCCEEEeecccceecCChhhcCCCCCcEEEcccceeceecC--hhhcCCCCCcEEEccc
Q 034189 5 RSNLGQNLLTGKIPPSLGRLSSLQTLSLLENGLNGTLPPELGKLSNLQKLRLQSNNLRGDLP--KDYENLKNLTIFGIAG 82 (102)
Q Consensus 5 ~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~p--~~~~~~~~L~~l~l~~ 82 (102)
.+++.+|.+- . .+.|+.++.|.+|.+..|+++...|.--..++.+..+.+.+|.+. .+. +-+..+|.|+.+.+-+
T Consensus 46 ~iDLtdNdl~-~-l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~-~l~dl~pLa~~p~L~~Ltll~ 122 (233)
T KOG1644|consen 46 AIDLTDNDLR-K-LDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQ-ELGDLDPLASCPKLEYLTLLG 122 (233)
T ss_pred eecccccchh-h-cccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchh-hhhhcchhccCCccceeeecC
Confidence 4666677655 2 233566777777778888877444433344566777777777766 321 2345667777777777
Q ss_pred ceee
Q 034189 83 NYLS 86 (102)
Q Consensus 83 n~~~ 86 (102)
|.+.
T Consensus 123 Npv~ 126 (233)
T KOG1644|consen 123 NPVE 126 (233)
T ss_pred Cchh
Confidence 7665
No 44
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.96 E-value=1.5e-05 Score=46.04 Aligned_cols=94 Identities=21% Similarity=0.172 Sum_probs=62.5
Q ss_pred EEEecCCcceecCChhhcCCCCCCEEEeecccceecCChhhcCCCCCcEEEcccceeceecChhhcCCCCCcEEEcccce
Q 034189 5 RSNLGQNLLTGKIPPSLGRLSSLQTLSLLENGLNGTLPPELGKLSNLQKLRLQSNNLRGDLPKDYENLKNLTIFGIAGNY 84 (102)
Q Consensus 5 ~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~p~~~~~~~~L~~l~l~~n~ 84 (102)
++++.+.++. .+..--.-......+|++.|.+. .. +.+..++.|..+.+++|+++...|..-..++++..|.+.+|.
T Consensus 23 e~~LR~lkip-~ienlg~~~d~~d~iDLtdNdl~-~l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNs 99 (233)
T KOG1644|consen 23 ELDLRGLKIP-VIENLGATLDQFDAIDLTDNDLR-KL-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNS 99 (233)
T ss_pred cccccccccc-chhhccccccccceecccccchh-hc-ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcc
Confidence 4555555544 11111112346678899999987 33 346788899999999999997767665678899999999998
Q ss_pred eeeecc-hhhhccCCcee
Q 034189 85 LSGRIP-TFIAKWVNLYA 101 (102)
Q Consensus 85 ~~~~~~-~~~~~l~~L~~ 101 (102)
+..... +-+..+++|+.
T Consensus 100 i~~l~dl~pLa~~p~L~~ 117 (233)
T KOG1644|consen 100 IQELGDLDPLASCPKLEY 117 (233)
T ss_pred hhhhhhcchhccCCccce
Confidence 863211 23445555554
No 45
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.92 E-value=7.1e-07 Score=59.91 Aligned_cols=90 Identities=27% Similarity=0.364 Sum_probs=68.9
Q ss_pred EEecCCcceecCChhhcCCCCCCEEEeecccceecCChhhcCCCCCcEEEcccceeceecChhhcCCCCCcEEEccccee
Q 034189 6 SNLGQNLLTGKIPPSLGRLSSLQTLSLLENGLNGTLPPELGKLSNLQKLRLQSNNLRGDLPKDYENLKNLTIFGIAGNYL 85 (102)
Q Consensus 6 L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~p~~~~~~~~L~~l~l~~n~~ 85 (102)
.+++.|.+. ....++.-+++++.|+++.|+++ ... .+..++.|+.+|+++|.++ ..|..-..-..|..|.+.+|.+
T Consensus 169 a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~-~v~-~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~L~~L~lrnN~l 244 (1096)
T KOG1859|consen 169 ASFSYNRLV-LMDESLQLLPALESLNLSHNKFT-KVD-NLRRLPKLKHLDLSYNCLR-HVPQLSMVGCKLQLLNLRNNAL 244 (1096)
T ss_pred hhcchhhHH-hHHHHHHHHHHhhhhccchhhhh-hhH-HHHhcccccccccccchhc-cccccchhhhhheeeeecccHH
Confidence 456777777 67788888999999999999999 433 6888999999999999998 6776433334499999999988
Q ss_pred eeecchhhhccCCcee
Q 034189 86 SGRIPTFIAKWVNLYA 101 (102)
Q Consensus 86 ~~~~~~~~~~l~~L~~ 101 (102)
+ .+ ..+.++++|+.
T Consensus 245 ~-tL-~gie~LksL~~ 258 (1096)
T KOG1859|consen 245 T-TL-RGIENLKSLYG 258 (1096)
T ss_pred H-hh-hhHHhhhhhhc
Confidence 7 43 23555555543
No 46
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.76 E-value=4.6e-06 Score=50.93 Aligned_cols=82 Identities=27% Similarity=0.311 Sum_probs=59.8
Q ss_pred EEEEecCCccee--cCChhhcCCCCCCEEEeecccceecCChhhcCCCCCcEEEcccceeceecCh-hhcCCCCCcEEEc
Q 034189 4 CRSNLGQNLLTG--KIPPSLGRLSSLQTLSLLENGLNGTLPPELGKLSNLQKLRLQSNNLRGDLPK-DYENLKNLTIFGI 80 (102)
Q Consensus 4 ~~L~l~~n~~~~--~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~p~-~~~~~~~L~~l~l 80 (102)
+++++.+|.++. ++...+.+|++++.++++.|.+...+...-.+..+++.+-+.+..+.+.... ....+|.++.+++
T Consensus 74 ~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHm 153 (418)
T KOG2982|consen 74 KELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHM 153 (418)
T ss_pred hhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhh
Confidence 468899999884 3555678899999999999998844433224677899999988887766543 3456777777777
Q ss_pred cccee
Q 034189 81 AGNYL 85 (102)
Q Consensus 81 ~~n~~ 85 (102)
+.|.+
T Consensus 154 S~N~~ 158 (418)
T KOG2982|consen 154 SDNSL 158 (418)
T ss_pred ccchh
Confidence 76643
No 47
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.75 E-value=8.1e-06 Score=51.96 Aligned_cols=77 Identities=35% Similarity=0.478 Sum_probs=58.7
Q ss_pred EecCCcceecCChhhcCCCCCCEEEeecccceecCChhhcCCCCCcEEEcccceeceecChhhcCCCCCcEEEcccceee
Q 034189 7 NLGQNLLTGKIPPSLGRLSSLQTLSLLENGLNGTLPPELGKLSNLQKLRLQSNNLRGDLPKDYENLKNLTIFGIAGNYLS 86 (102)
Q Consensus 7 ~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~ 86 (102)
.+..|.+. ..-..+..+.++..+++..|.+. .+...+..+++|+++++++|.++.. ..+..++.|+.|++.+|.++
T Consensus 78 ~l~~n~i~-~~~~~l~~~~~l~~l~l~~n~i~-~i~~~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L~l~~N~i~ 153 (414)
T KOG0531|consen 78 NLRQNLIA-KILNHLSKLKSLEALDLYDNKIE-KIENLLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKELNLSGNLIS 153 (414)
T ss_pred ccchhhhh-hhhcccccccceeeeeccccchh-hcccchhhhhcchheeccccccccc--cchhhccchhhheeccCcch
Confidence 34555555 22333667889999999999999 5555467889999999999999843 34667777999999999998
Q ss_pred e
Q 034189 87 G 87 (102)
Q Consensus 87 ~ 87 (102)
.
T Consensus 154 ~ 154 (414)
T KOG0531|consen 154 D 154 (414)
T ss_pred h
Confidence 3
No 48
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.48 E-value=5.3e-06 Score=50.25 Aligned_cols=92 Identities=24% Similarity=0.260 Sum_probs=66.8
Q ss_pred EEEecCCcceecCChhhcCCCCCCEEEeecccceecCChhhcCCCCCcEEEcccceeceecCh--hhcCCCCCcEEEccc
Q 034189 5 RSNLGQNLLTGKIPPSLGRLSSLQTLSLLENGLNGTLPPELGKLSNLQKLRLQSNNLRGDLPK--DYENLKNLTIFGIAG 82 (102)
Q Consensus 5 ~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~p~--~~~~~~~L~~l~l~~ 82 (102)
.|++.++.++ ++ .....|+.|+.|.++-|+++ .+ ..+..|..|+.++++.|.+. .+.+ -++++++|+.|.+..
T Consensus 23 KLNcwg~~L~-DI-sic~kMp~lEVLsLSvNkIs-sL-~pl~rCtrLkElYLRkN~I~-sldEL~YLknlpsLr~LWL~E 97 (388)
T KOG2123|consen 23 KLNCWGCGLD-DI-SICEKMPLLEVLSLSVNKIS-SL-APLQRCTRLKELYLRKNCIE-SLDELEYLKNLPSLRTLWLDE 97 (388)
T ss_pred hhcccCCCcc-HH-HHHHhcccceeEEeeccccc-cc-hhHHHHHHHHHHHHHhcccc-cHHHHHHHhcCchhhhHhhcc
Confidence 4677778776 32 23467999999999999999 33 34678899999999999887 4444 357899999999998
Q ss_pred ceeeeecch-----hhhccCCcee
Q 034189 83 NYLSGRIPT-----FIAKWVNLYA 101 (102)
Q Consensus 83 n~~~~~~~~-----~~~~l~~L~~ 101 (102)
|+..+..+. .+..+++|+.
T Consensus 98 NPCc~~ag~nYR~~VLR~LPnLkK 121 (388)
T KOG2123|consen 98 NPCCGEAGQNYRRKVLRVLPNLKK 121 (388)
T ss_pred CCcccccchhHHHHHHHHcccchh
Confidence 877665432 3445555543
No 49
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=97.42 E-value=1.1e-05 Score=51.27 Aligned_cols=79 Identities=25% Similarity=0.276 Sum_probs=34.0
Q ss_pred EEEecCCcceecCC--hhhcCCCCCCEEEeecccceecCChh-hcCCCCCcEEEcccceeceecChh-hcCCCCCcEEEc
Q 034189 5 RSNLGQNLLTGKIP--PSLGRLSSLQTLSLLENGLNGTLPPE-LGKLSNLQKLRLQSNNLRGDLPKD-YENLKNLTIFGI 80 (102)
Q Consensus 5 ~L~l~~n~~~~~~~--~~~~~l~~L~~l~l~~n~~~~~~~~~-~~~~~~L~~l~l~~n~~~~~~p~~-~~~~~~L~~l~l 80 (102)
+|++++|-+....+ ....++++|+.|+++.|++.....+. -..+++++.+.++.|.+++..-.. ...+|++..|++
T Consensus 150 ~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L 229 (505)
T KOG3207|consen 150 DLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYL 229 (505)
T ss_pred eecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhh
Confidence 45555555443222 23445555555565555554211111 113444555555555544332211 123344444444
Q ss_pred ccc
Q 034189 81 AGN 83 (102)
Q Consensus 81 ~~n 83 (102)
..|
T Consensus 230 ~~N 232 (505)
T KOG3207|consen 230 EAN 232 (505)
T ss_pred hcc
Confidence 444
No 50
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=97.41 E-value=3.2e-05 Score=49.30 Aligned_cols=97 Identities=18% Similarity=0.119 Sum_probs=65.7
Q ss_pred eEEEEecCCcceecCC--hhhcCCCCCCEEEeeccccee--cCChhhcCCCCCcEEEcccceeceecChhh-cCCCCCcE
Q 034189 3 SCRSNLGQNLLTGKIP--PSLGRLSSLQTLSLLENGLNG--TLPPELGKLSNLQKLRLQSNNLRGDLPKDY-ENLKNLTI 77 (102)
Q Consensus 3 ~~~L~l~~n~~~~~~~--~~~~~l~~L~~l~l~~n~~~~--~~~~~~~~~~~L~~l~l~~n~~~~~~p~~~-~~~~~L~~ 77 (102)
++++.+.++.+. ..+ .....+++++.+|++.|-+.. .+-.-...+++|+.|+++.|++.....+.. ..++.++.
T Consensus 123 L~~IsLdn~~V~-~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~ 201 (505)
T KOG3207|consen 123 LREISLDNYRVE-DAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQ 201 (505)
T ss_pred hhheeecCcccc-ccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhhe
Confidence 356677777777 444 367789999999999998773 112335678999999999998874333322 24678899
Q ss_pred EEcccceeeeec-chhhhccCCce
Q 034189 78 FGIAGNYLSGRI-PTFIAKWVNLY 100 (102)
Q Consensus 78 l~l~~n~~~~~~-~~~~~~l~~L~ 100 (102)
|.++.|.+++.- ......+++|.
T Consensus 202 L~l~~CGls~k~V~~~~~~fPsl~ 225 (505)
T KOG3207|consen 202 LVLNSCGLSWKDVQWILLTFPSLE 225 (505)
T ss_pred EEeccCCCCHHHHHHHHHhCCcHH
Confidence 999988887532 22344555554
No 51
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.37 E-value=0.00011 Score=43.81 Aligned_cols=64 Identities=25% Similarity=0.380 Sum_probs=35.2
Q ss_pred hcCCCCCCEEEeecc--cceecCChhhcCCCCCcEEEcccceeceecChh---hcCCCCCcEEEcccceee
Q 034189 21 LGRLSSLQTLSLLEN--GLNGTLPPELGKLSNLQKLRLQSNNLRGDLPKD---YENLKNLTIFGIAGNYLS 86 (102)
Q Consensus 21 ~~~l~~L~~l~l~~n--~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~p~~---~~~~~~L~~l~l~~n~~~ 86 (102)
+..+++|+.+.++.| ++...++.....+++|++++++.|++.. ++. ...+.+|..+++..|..+
T Consensus 61 ~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~--lstl~pl~~l~nL~~Ldl~n~~~~ 129 (260)
T KOG2739|consen 61 FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD--LSTLRPLKELENLKSLDLFNCSVT 129 (260)
T ss_pred CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc--ccccchhhhhcchhhhhcccCCcc
Confidence 445666666666666 5554444444445666777777666652 221 233455556666655544
No 52
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=97.30 E-value=0.00019 Score=26.62 Aligned_cols=12 Identities=50% Similarity=0.648 Sum_probs=5.4
Q ss_pred CcEEEcccceec
Q 034189 51 LQKLRLQSNNLR 62 (102)
Q Consensus 51 L~~l~l~~n~~~ 62 (102)
|+++|+++|+++
T Consensus 2 L~~Ldls~n~l~ 13 (22)
T PF00560_consen 2 LEYLDLSGNNLT 13 (22)
T ss_dssp ESEEEETSSEES
T ss_pred ccEEECCCCcCE
Confidence 344444444444
No 53
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=97.21 E-value=0.00029 Score=26.11 Aligned_cols=22 Identities=32% Similarity=0.604 Sum_probs=17.6
Q ss_pred CCcEEEcccceeeeecchhhhcc
Q 034189 74 NLTIFGIAGNYLSGRIPTFIAKW 96 (102)
Q Consensus 74 ~L~~l~l~~n~~~~~~~~~~~~l 96 (102)
+|+++++++|.++ .+|..|+++
T Consensus 1 ~L~~Ldls~n~l~-~ip~~~~~l 22 (22)
T PF00560_consen 1 NLEYLDLSGNNLT-SIPSSFSNL 22 (22)
T ss_dssp TESEEEETSSEES-EEGTTTTT-
T ss_pred CccEEECCCCcCE-eCChhhcCC
Confidence 4789999999999 888766653
No 54
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.05 E-value=0.00035 Score=41.76 Aligned_cols=64 Identities=31% Similarity=0.482 Sum_probs=45.1
Q ss_pred hcCCCCCCEEEeecccceecCChhhcCCCCCcEEEcccc--eeceecChhhcCCCCCcEEEcccceee
Q 034189 21 LGRLSSLQTLSLLENGLNGTLPPELGKLSNLQKLRLQSN--NLRGDLPKDYENLKNLTIFGIAGNYLS 86 (102)
Q Consensus 21 ~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n--~~~~~~p~~~~~~~~L~~l~l~~n~~~ 86 (102)
......++.+.+...+++ . -..+..++.|+.+.++.| ++.+.++.....+|+|+++++++|+++
T Consensus 39 ~d~~~~le~ls~~n~glt-t-~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~ 104 (260)
T KOG2739|consen 39 TDEFVELELLSVINVGLT-T-LTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK 104 (260)
T ss_pred cccccchhhhhhhcccee-e-cccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc
Confidence 334455555665565655 2 224567889999999999 666555544556699999999999987
No 55
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=96.83 E-value=0.0007 Score=42.24 Aligned_cols=83 Identities=23% Similarity=0.318 Sum_probs=49.6
Q ss_pred EEEecCCccee----cCChhhcCCCCCCEEEeecccceec----CChhhcCCCCCcEEEcccceeceecC----hhh-cC
Q 034189 5 RSNLGQNLLTG----KIPPSLGRLSSLQTLSLLENGLNGT----LPPELGKLSNLQKLRLQSNNLRGDLP----KDY-EN 71 (102)
Q Consensus 5 ~L~l~~n~~~~----~~~~~~~~l~~L~~l~l~~n~~~~~----~~~~~~~~~~L~~l~l~~n~~~~~~p----~~~-~~ 71 (102)
++.+..|.|.. .....+..+++|+.||+..|.++.. +...++.+++|+.++++.|.+..... +.+ ..
T Consensus 189 evr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~ 268 (382)
T KOG1909|consen 189 EVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKES 268 (382)
T ss_pred eEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhcc
Confidence 34455555442 1223466677888888887777632 23345566777777777776664322 222 23
Q ss_pred CCCCcEEEcccceeee
Q 034189 72 LKNLTIFGIAGNYLSG 87 (102)
Q Consensus 72 ~~~L~~l~l~~n~~~~ 87 (102)
.|+|.++.+.+|.++.
T Consensus 269 ~p~L~vl~l~gNeIt~ 284 (382)
T KOG1909|consen 269 APSLEVLELAGNEITR 284 (382)
T ss_pred CCCCceeccCcchhHH
Confidence 5677777777777654
No 56
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.63 E-value=0.014 Score=30.95 Aligned_cols=76 Identities=16% Similarity=0.222 Sum_probs=32.9
Q ss_pred EEEecCCcceecCChhhcCCCCCCEEEeecccceecCChhhcCCCCCcEEEcccceeceecChhhcCCCCCcEEEcccc
Q 034189 5 RSNLGQNLLTGKIPPSLGRLSSLQTLSLLENGLNGTLPPELGKLSNLQKLRLQSNNLRGDLPKDYENLKNLTIFGIAGN 83 (102)
Q Consensus 5 ~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~p~~~~~~~~L~~l~l~~n 83 (102)
.+.+.. .+.......|..+.+++.+.+..+ +.......+..+..++.+.+.. .+.......|..+.+++.+.+..+
T Consensus 16 ~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~~ 91 (129)
T PF13306_consen 16 SITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIPSN 91 (129)
T ss_dssp EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEETTT
T ss_pred EEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccccccCcc
Confidence 445543 344333444666666777766554 4312222355555666666644 222122344555666666666543
No 57
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.62 E-value=0.0011 Score=45.21 Aligned_cols=57 Identities=21% Similarity=0.340 Sum_probs=34.2
Q ss_pred CCCCCEEEeecccceecC-ChhhcCCCCCcEEEcccceeceecChhhcCCCCCcEEEccc
Q 034189 24 LSSLQTLSLLENGLNGTL-PPELGKLSNLQKLRLQSNNLRGDLPKDYENLKNLTIFGIAG 82 (102)
Q Consensus 24 l~~L~~l~l~~n~~~~~~-~~~~~~~~~L~~l~l~~n~~~~~~p~~~~~~~~L~~l~l~~ 82 (102)
+|+|+.|.+.+-.+.... ..-...+++|..||+|++.+... .+++.+.+|++|.+.+
T Consensus 147 LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrn 204 (699)
T KOG3665|consen 147 LPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRN 204 (699)
T ss_pred CcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHHhccC
Confidence 677777777765554222 22355677788888888776622 4455555555554443
No 58
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=96.59 E-value=0.00043 Score=43.12 Aligned_cols=41 Identities=22% Similarity=0.445 Sum_probs=20.3
Q ss_pred cCCCCCcEEEcccceecee----cChhhcCCCCCcEEEcccceee
Q 034189 46 GKLSNLQKLRLQSNNLRGD----LPKDYENLKNLTIFGIAGNYLS 86 (102)
Q Consensus 46 ~~~~~L~~l~l~~n~~~~~----~p~~~~~~~~L~~l~l~~n~~~ 86 (102)
...+.|..+.+..|.+... .-..+..++.|++||+..|-++
T Consensus 182 ~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft 226 (382)
T KOG1909|consen 182 QSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFT 226 (382)
T ss_pred HhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhh
Confidence 3344455555555444311 1123445666666666666554
No 59
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.53 E-value=0.025 Score=29.98 Aligned_cols=92 Identities=17% Similarity=0.196 Sum_probs=41.6
Q ss_pred EEEEecCCcceecCChhhcCCCCCCEEEeecccceecCChhhcCCCCCcEEEcccceeceecChhhcCCCCCcEEEcccc
Q 034189 4 CRSNLGQNLLTGKIPPSLGRLSSLQTLSLLENGLNGTLPPELGKLSNLQKLRLQSNNLRGDLPKDYENLKNLTIFGIAGN 83 (102)
Q Consensus 4 ~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~p~~~~~~~~L~~l~l~~n 83 (102)
+.+.+.++ +.......|..+..++.+.+.. .+.......+..+..++.+++..+ +.......+... .++.+.+..
T Consensus 38 ~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~- 112 (129)
T PF13306_consen 38 KSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS- 112 (129)
T ss_dssp SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEETTT--BEEHTTTTTT--T--EEE-TT-
T ss_pred cccccccc-ccccceeeeecccccccccccc-cccccccccccccccccccccCcc-ccEEchhhhcCC-CceEEEECC-
Confidence 45666654 4433344577777788888855 433222334666788888887655 442334556665 778777765
Q ss_pred eeeeecchhhhccCCce
Q 034189 84 YLSGRIPTFIAKWVNLY 100 (102)
Q Consensus 84 ~~~~~~~~~~~~l~~L~ 100 (102)
.+.......|.++.+|+
T Consensus 113 ~~~~i~~~~F~~~~~l~ 129 (129)
T PF13306_consen 113 NITKIEENAFKNCTKLK 129 (129)
T ss_dssp B-SS----GGG------
T ss_pred CccEECCccccccccCC
Confidence 33323345677776653
No 60
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.42 E-value=9.5e-05 Score=45.04 Aligned_cols=74 Identities=18% Similarity=0.242 Sum_probs=54.2
Q ss_pred CCCCCEEEeecccceecCChhhcCCCCCcEEEcccceeceecChhhcCCCCCcEEEcccceeeeecc--hhhhccCCcee
Q 034189 24 LSSLQTLSLLENGLNGTLPPELGKLSNLQKLRLQSNNLRGDLPKDYENLKNLTIFGIAGNYLSGRIP--TFIAKWVNLYA 101 (102)
Q Consensus 24 l~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~~--~~~~~l~~L~~ 101 (102)
+.+..+|+.-++.+.+ -+-...++.|+++.++-|+++... .+..|.+|+.++|..|.+. .+. ..+.++++|+.
T Consensus 18 l~~vkKLNcwg~~L~D--Isic~kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~-sldEL~YLknlpsLr~ 92 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDD--ISICEKMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIE-SLDELEYLKNLPSLRT 92 (388)
T ss_pred HHHhhhhcccCCCccH--HHHHHhcccceeEEeeccccccch--hHHHHHHHHHHHHHhcccc-cHHHHHHHhcCchhhh
Confidence 4445566666666662 233568899999999999998443 3788999999999999998 443 35678888775
Q ss_pred C
Q 034189 102 L 102 (102)
Q Consensus 102 l 102 (102)
|
T Consensus 93 L 93 (388)
T KOG2123|consen 93 L 93 (388)
T ss_pred H
Confidence 4
No 61
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=96.34 E-value=0.0027 Score=21.95 Aligned_cols=11 Identities=45% Similarity=0.682 Sum_probs=3.4
Q ss_pred CcEEEccccee
Q 034189 51 LQKLRLQSNNL 61 (102)
Q Consensus 51 L~~l~l~~n~~ 61 (102)
|+.+++++|++
T Consensus 3 L~~L~l~~n~L 13 (17)
T PF13504_consen 3 LRTLDLSNNRL 13 (17)
T ss_dssp -SEEEETSS--
T ss_pred cCEEECCCCCC
Confidence 34444444433
No 62
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.31 E-value=0.002 Score=43.99 Aligned_cols=81 Identities=19% Similarity=0.230 Sum_probs=37.1
Q ss_pred EEEecCCcceecCChhhcCCCCCCEEEeeccccee-cCChhhcCCCCCcEEEcccceeceecCh-------hhcCCCCCc
Q 034189 5 RSNLGQNLLTGKIPPSLGRLSSLQTLSLLENGLNG-TLPPELGKLSNLQKLRLQSNNLRGDLPK-------DYENLKNLT 76 (102)
Q Consensus 5 ~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~~~~-~~~~~~~~~~~L~~l~l~~n~~~~~~p~-------~~~~~~~L~ 76 (102)
.||++++.++ .+ ..++.+++|+.|.+.+-.+.. ..-..+..+.+|++||+|..+.. ..+. -...+|.|+
T Consensus 177 sLDIS~TnI~-nl-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~-~~~~ii~qYlec~~~LpeLr 253 (699)
T KOG3665|consen 177 SLDISGTNIS-NL-SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNN-DDTKIIEQYLECGMVLPELR 253 (699)
T ss_pred eeecCCCCcc-Cc-HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccc-cchHHHHHHHHhcccCcccc
Confidence 3444444444 22 233444444444444333331 11113445666677776665433 1111 112356677
Q ss_pred EEEcccceeeee
Q 034189 77 IFGIAGNYLSGR 88 (102)
Q Consensus 77 ~l~l~~n~~~~~ 88 (102)
.+|.+++.+...
T Consensus 254 fLDcSgTdi~~~ 265 (699)
T KOG3665|consen 254 FLDCSGTDINEE 265 (699)
T ss_pred EEecCCcchhHH
Confidence 777666655443
No 63
>PRK15386 type III secretion protein GogB; Provisional
Probab=96.03 E-value=0.017 Score=37.28 Aligned_cols=58 Identities=21% Similarity=0.272 Sum_probs=35.9
Q ss_pred eEEEEecCCcceecCChhhcCCCCCCEEEeecccceecCChhhcCCCCCcEEEcccc-eeceecCh
Q 034189 3 SCRSNLGQNLLTGKIPPSLGRLSSLQTLSLLENGLNGTLPPELGKLSNLQKLRLQSN-NLRGDLPK 67 (102)
Q Consensus 3 ~~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n-~~~~~~p~ 67 (102)
++.|++++|.++ .+|. -..+|+.|.++++.--..+|..+ ..+|+.|++++| .+. .+|.
T Consensus 54 l~~L~Is~c~L~-sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~-sLP~ 112 (426)
T PRK15386 54 SGRLYIKDCDIE-SLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEIS-GLPE 112 (426)
T ss_pred CCEEEeCCCCCc-ccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccc-cccc
Confidence 457888888877 6662 23468888887643222556543 246888888877 443 4443
No 64
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.21 E-value=0.0055 Score=38.03 Aligned_cols=63 Identities=29% Similarity=0.373 Sum_probs=30.4
Q ss_pred CCCCCEEEeeccccee--cCChhhcCCCCCcEEEcccceeceecChhhcCCCCCcEEEcccceee
Q 034189 24 LSSLQTLSLLENGLNG--TLPPELGKLSNLQKLRLQSNNLRGDLPKDYENLKNLTIFGIAGNYLS 86 (102)
Q Consensus 24 l~~L~~l~l~~n~~~~--~~~~~~~~~~~L~~l~l~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~ 86 (102)
++++..+|+.+|.+++ .+..-...+|.+++++++.|.+...+...-....+++++-+.+..+.
T Consensus 70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~ 134 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLS 134 (418)
T ss_pred hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCC
Confidence 3455566666666652 12223445666666666666654211110012345555555554443
No 65
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.02 E-value=0.0035 Score=36.50 Aligned_cols=33 Identities=12% Similarity=0.175 Sum_probs=14.9
Q ss_pred CCEEEeecccceecCChhhcCCCCCcEEEcccc
Q 034189 27 LQTLSLLENGLNGTLPPELGKLSNLQKLRLQSN 59 (102)
Q Consensus 27 L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n 59 (102)
++.++.++..+.....+.+..++.++.+.+.++
T Consensus 103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~c 135 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANC 135 (221)
T ss_pred EEEEecCCchHHHHHHHHHhccchhhhheeccc
Confidence 344444444444333334444444444444443
No 66
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=95.01 E-value=0.0087 Score=22.37 Aligned_cols=14 Identities=21% Similarity=0.460 Sum_probs=5.8
Q ss_pred CCCcEEEcccceee
Q 034189 73 KNLTIFGIAGNYLS 86 (102)
Q Consensus 73 ~~L~~l~l~~n~~~ 86 (102)
++|+.|++++|.++
T Consensus 2 ~~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 2 PNLETLDLSNNQIT 15 (24)
T ss_dssp TT-SEEE-TSSBEH
T ss_pred CCCCEEEccCCcCC
Confidence 34445555555544
No 67
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=94.51 E-value=0.043 Score=20.78 Aligned_cols=13 Identities=46% Similarity=0.708 Sum_probs=6.0
Q ss_pred CCcEEEcccceec
Q 034189 50 NLQKLRLQSNNLR 62 (102)
Q Consensus 50 ~L~~l~l~~n~~~ 62 (102)
+|+.+++++|++.
T Consensus 3 ~L~~L~L~~N~l~ 15 (26)
T smart00370 3 NLRELDLSNNQLS 15 (26)
T ss_pred CCCEEECCCCcCC
Confidence 3444444444444
No 68
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=94.51 E-value=0.043 Score=20.78 Aligned_cols=13 Identities=46% Similarity=0.708 Sum_probs=6.0
Q ss_pred CCcEEEcccceec
Q 034189 50 NLQKLRLQSNNLR 62 (102)
Q Consensus 50 ~L~~l~l~~n~~~ 62 (102)
+|+.+++++|++.
T Consensus 3 ~L~~L~L~~N~l~ 15 (26)
T smart00369 3 NLRELDLSNNQLS 15 (26)
T ss_pred CCCEEECCCCcCC
Confidence 3444444444444
No 69
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.41 E-value=0.0057 Score=35.69 Aligned_cols=80 Identities=19% Similarity=0.082 Sum_probs=53.4
Q ss_pred EEEEecCCcceecCChhhcCCCCCCEEEeecccceecC-Chh-hcCCCCCcEEEcccc-eeceecChhhcCCCCCcEEEc
Q 034189 4 CRSNLGQNLLTGKIPPSLGRLSSLQTLSLLENGLNGTL-PPE-LGKLSNLQKLRLQSN-NLRGDLPKDYENLKNLTIFGI 80 (102)
Q Consensus 4 ~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~-~~~-~~~~~~L~~l~l~~n-~~~~~~p~~~~~~~~L~~l~l 80 (102)
+.++-++..|..+--+.+.+++.++.+.+..+.-.+.. -+. ....++|+.|+++.| +|+......+..+++|+.+.+
T Consensus 104 eaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l 183 (221)
T KOG3864|consen 104 EAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHL 183 (221)
T ss_pred EEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHHh
Confidence 35677777777655566777888888888777644221 111 125678999999987 677444455677788888877
Q ss_pred ccc
Q 034189 81 AGN 83 (102)
Q Consensus 81 ~~n 83 (102)
.+-
T Consensus 184 ~~l 186 (221)
T KOG3864|consen 184 YDL 186 (221)
T ss_pred cCc
Confidence 653
No 70
>PRK15386 type III secretion protein GogB; Provisional
Probab=94.38 E-value=0.071 Score=34.61 Aligned_cols=56 Identities=16% Similarity=0.280 Sum_probs=38.7
Q ss_pred hcCCCCCCEEEeecccceecCChhhcCCCCCcEEEcccc-eeceecChhhcCCCCCcEEEcccc
Q 034189 21 LGRLSSLQTLSLLENGLNGTLPPELGKLSNLQKLRLQSN-NLRGDLPKDYENLKNLTIFGIAGN 83 (102)
Q Consensus 21 ~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n-~~~~~~p~~~~~~~~L~~l~l~~n 83 (102)
+..+..+..|+++.|.++ .+|. ...+|+.+.++++ .+. .+|..+ .++|+.|++.+|
T Consensus 48 ~~~~~~l~~L~Is~c~L~-sLP~---LP~sLtsL~Lsnc~nLt-sLP~~L--P~nLe~L~Ls~C 104 (426)
T PRK15386 48 IEEARASGRLYIKDCDIE-SLPV---LPNELTEITIENCNNLT-TLPGSI--PEGLEKLTVCHC 104 (426)
T ss_pred HHHhcCCCEEEeCCCCCc-ccCC---CCCCCcEEEccCCCCcc-cCCchh--hhhhhheEccCc
Confidence 344788999999999888 6662 3346999999875 443 556533 246777777766
No 71
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=94.30 E-value=0.00092 Score=41.31 Aligned_cols=81 Identities=20% Similarity=0.219 Sum_probs=48.6
Q ss_pred EEEEecCCccee-cCChhhcCCCCCCEEEeecccceecCChhhcCCCCCcEEEcccc-eeceecCh-hhcCCCCCcEEEc
Q 034189 4 CRSNLGQNLLTG-KIPPSLGRLSSLQTLSLLENGLNGTLPPELGKLSNLQKLRLQSN-NLRGDLPK-DYENLKNLTIFGI 80 (102)
Q Consensus 4 ~~L~l~~n~~~~-~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n-~~~~~~p~-~~~~~~~L~~l~l 80 (102)
+.+|++...++. .....+..+.+|+.+.+.++++.+.+...+..-.+|+.++++++ .++....+ .+..+..|..|++
T Consensus 188 q~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNl 267 (419)
T KOG2120|consen 188 QHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNL 267 (419)
T ss_pred HHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCc
Confidence 346666666663 34455666777777777777777555555666667777777765 33311111 2355666666666
Q ss_pred ccce
Q 034189 81 AGNY 84 (102)
Q Consensus 81 ~~n~ 84 (102)
+.+-
T Consensus 268 sWc~ 271 (419)
T KOG2120|consen 268 SWCF 271 (419)
T ss_pred hHhh
Confidence 6553
No 72
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=93.35 E-value=0.042 Score=33.92 Aligned_cols=83 Identities=18% Similarity=0.246 Sum_probs=50.4
Q ss_pred EEEEecCCcceecCC----hhhcCCCCCCEEEeecc---cceecCCh-------hhcCCCCCcEEEcccceeceecCh--
Q 034189 4 CRSNLGQNLLTGKIP----PSLGRLSSLQTLSLLEN---GLNGTLPP-------ELGKLSNLQKLRLQSNNLRGDLPK-- 67 (102)
Q Consensus 4 ~~L~l~~n~~~~~~~----~~~~~l~~L~~l~l~~n---~~~~~~~~-------~~~~~~~L~~l~l~~n~~~~~~p~-- 67 (102)
+++++++|.|....- ..+....+|+..+++.- +..+.+++ .+..|+.++..++|.|.+....|.
T Consensus 33 ~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~e~L 112 (388)
T COG5238 33 VEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFPEEL 112 (388)
T ss_pred eEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccchHH
Confidence 467888888774322 33444566666665542 22222222 334578888888888877755554
Q ss_pred --hhcCCCCCcEEEcccceee
Q 034189 68 --DYENLKNLTIFGIAGNYLS 86 (102)
Q Consensus 68 --~~~~~~~L~~l~l~~n~~~ 86 (102)
.+++...+.+|.+.+|.+.
T Consensus 113 ~d~is~~t~l~HL~l~NnGlG 133 (388)
T COG5238 113 GDLISSSTDLVHLKLNNNGLG 133 (388)
T ss_pred HHHHhcCCCceeEEeecCCCC
Confidence 2345677888888877654
No 73
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=92.69 E-value=0.0006 Score=40.71 Aligned_cols=34 Identities=29% Similarity=0.429 Sum_probs=13.9
Q ss_pred CEEEeecccceecCChhhcCCCCCcEEEcccceec
Q 034189 28 QTLSLLENGLNGTLPPELGKLSNLQKLRLQSNNLR 62 (102)
Q Consensus 28 ~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~ 62 (102)
..+|++.|++. .....+..++.+..+|++.|++.
T Consensus 45 tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~ 78 (326)
T KOG0473|consen 45 TVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK 78 (326)
T ss_pred eeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh
Confidence 34444444443 22333333344444444444443
No 74
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=92.27 E-value=0.00086 Score=40.08 Aligned_cols=81 Identities=17% Similarity=0.148 Sum_probs=61.4
Q ss_pred EEEEecCCcceecCChhhcCCCCCCEEEeecccceecCChhhcCCCCCcEEEcccceeceecChhhcCCCCCcEEEcccc
Q 034189 4 CRSNLGQNLLTGKIPPSLGRLSSLQTLSLLENGLNGTLPPELGKLSNLQKLRLQSNNLRGDLPKDYENLKNLTIFGIAGN 83 (102)
Q Consensus 4 ~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~p~~~~~~~~L~~l~l~~n 83 (102)
+.||++.|+.- .....|+.+..+..++++.|.+. ..|..++....+..+++-.|... ..|..+...+.++.+++-.|
T Consensus 45 tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~k~~ 121 (326)
T KOG0473|consen 45 TVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQKKT 121 (326)
T ss_pred eeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhhccC
Confidence 34677777666 55566777778888899988888 67877777777777776666666 77888888899998888888
Q ss_pred eeee
Q 034189 84 YLSG 87 (102)
Q Consensus 84 ~~~~ 87 (102)
.+..
T Consensus 122 ~~~~ 125 (326)
T KOG0473|consen 122 EFFR 125 (326)
T ss_pred cchH
Confidence 7653
No 75
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=92.13 E-value=0.1 Score=20.15 Aligned_cols=17 Identities=35% Similarity=0.714 Sum_probs=10.0
Q ss_pred CCcEEEcccceeceecCh
Q 034189 50 NLQKLRLQSNNLRGDLPK 67 (102)
Q Consensus 50 ~L~~l~l~~n~~~~~~p~ 67 (102)
+|+.+++++|+++ .+|+
T Consensus 3 ~L~~L~vs~N~Lt-~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLT-SLPE 19 (26)
T ss_pred ccceeecCCCccc-cCcc
Confidence 4556666666665 5554
No 76
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=90.85 E-value=0.094 Score=32.89 Aligned_cols=59 Identities=24% Similarity=0.263 Sum_probs=34.1
Q ss_pred CCCCCCEEEeeccc-ceecCChhhcCCCCCcEEEcccceeceecChh---hcCCCCCcEEEcccc
Q 034189 23 RLSSLQTLSLLENG-LNGTLPPELGKLSNLQKLRLQSNNLRGDLPKD---YENLKNLTIFGIAGN 83 (102)
Q Consensus 23 ~l~~L~~l~l~~n~-~~~~~~~~~~~~~~L~~l~l~~n~~~~~~p~~---~~~~~~L~~l~l~~n 83 (102)
.++.+..+|++.+. ++......+..++.|+++.+++|... .|.. +...|++.+|++.++
T Consensus 311 rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i--~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 311 RCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDI--IPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred hCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCC--ChHHeeeeccCcceEEEEeccc
Confidence 46667777776653 44333344556667777777776432 3432 344567777776553
No 77
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=88.42 E-value=0.43 Score=18.33 Aligned_cols=14 Identities=21% Similarity=0.351 Sum_probs=11.6
Q ss_pred CCCcEEEcccceee
Q 034189 73 KNLTIFGIAGNYLS 86 (102)
Q Consensus 73 ~~L~~l~l~~n~~~ 86 (102)
.+|+.|+++.|+++
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 56888899988887
No 78
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=85.98 E-value=0.64 Score=17.96 Aligned_cols=13 Identities=46% Similarity=0.565 Sum_probs=6.1
Q ss_pred CCCEEEeecccce
Q 034189 26 SLQTLSLLENGLN 38 (102)
Q Consensus 26 ~L~~l~l~~n~~~ 38 (102)
+|+.|++++|.+.
T Consensus 3 ~L~~LdL~~N~i~ 15 (28)
T smart00368 3 SLRELDLSNNKLG 15 (28)
T ss_pred ccCEEECCCCCCC
Confidence 3444455554443
No 79
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=84.56 E-value=0.46 Score=30.74 Aligned_cols=63 Identities=21% Similarity=0.200 Sum_probs=33.5
Q ss_pred cCCCCCCEEEeeccc-ceecCChhh-cCCCCCcEEEcccce-eceecCh-hhcCCCCCcEEEcccce
Q 034189 22 GRLSSLQTLSLLENG-LNGTLPPEL-GKLSNLQKLRLQSNN-LRGDLPK-DYENLKNLTIFGIAGNY 84 (102)
Q Consensus 22 ~~l~~L~~l~l~~n~-~~~~~~~~~-~~~~~L~~l~l~~n~-~~~~~p~-~~~~~~~L~~l~l~~n~ 84 (102)
..+.+++.++++++. +++..-..+ ..+++|+.+.+.++. ++...-. ....++.|++++++.+.
T Consensus 240 ~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~ 306 (482)
T KOG1947|consen 240 SICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCH 306 (482)
T ss_pred hhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCc
Confidence 345666677776666 443322222 236677777766554 3422222 22346667777777553
No 80
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=84.45 E-value=4.9 Score=25.37 Aligned_cols=35 Identities=26% Similarity=0.440 Sum_probs=17.8
Q ss_pred EEEEecCCcceecCChh----hcCCCCCCEEEeecccce
Q 034189 4 CRSNLGQNLLTGKIPPS----LGRLSSLQTLSLLENGLN 38 (102)
Q Consensus 4 ~~L~l~~n~~~~~~~~~----~~~l~~L~~l~l~~n~~~ 38 (102)
+.+++++|-+....|+. ++.-..+..+.+++|.+.
T Consensus 95 ~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlG 133 (388)
T COG5238 95 QKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLG 133 (388)
T ss_pred eeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCC
Confidence 44556666555444432 333445555555555544
No 81
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=72.05 E-value=2.6 Score=34.04 Aligned_cols=33 Identities=24% Similarity=0.388 Sum_probs=26.3
Q ss_pred EeecccceecCCh-hhcCCCCCcEEEcccceecee
Q 034189 31 SLLENGLNGTLPP-ELGKLSNLQKLRLQSNNLRGD 64 (102)
Q Consensus 31 ~l~~n~~~~~~~~-~~~~~~~L~~l~l~~n~~~~~ 64 (102)
||++|+++ .++. .|..+.+|+.++|++|.+...
T Consensus 1 DLSnN~Ls-tLp~g~F~~L~sL~~LdLsgNPw~CD 34 (2740)
T TIGR00864 1 DISNNKIS-TIEEGICANLCNLSEIDLSGNPFECD 34 (2740)
T ss_pred CCCCCcCC-ccChHHhccCCCceEEEeeCCccccc
Confidence 47889999 5555 588899999999999987743
No 82
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=66.47 E-value=4.2 Score=15.11 Aligned_cols=10 Identities=40% Similarity=0.567 Sum_probs=4.9
Q ss_pred CCcEEEcccc
Q 034189 50 NLQKLRLQSN 59 (102)
Q Consensus 50 ~L~~l~l~~n 59 (102)
+|+.++++++
T Consensus 3 ~L~~L~l~~C 12 (26)
T smart00367 3 NLRELDLSGC 12 (26)
T ss_pred CCCEeCCCCC
Confidence 4455555544
No 83
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=64.08 E-value=3.8 Score=27.96 Aligned_cols=63 Identities=21% Similarity=0.124 Sum_probs=34.3
Q ss_pred CCCCCEEEeecccceecC--ChhhcCCCCCcEEEcccc--eeceecChh-hcCCCCCcEEEcccceeee
Q 034189 24 LSSLQTLSLLENGLNGTL--PPELGKLSNLQKLRLQSN--NLRGDLPKD-YENLKNLTIFGIAGNYLSG 87 (102)
Q Consensus 24 l~~L~~l~l~~n~~~~~~--~~~~~~~~~L~~l~l~~n--~~~~~~p~~-~~~~~~L~~l~l~~n~~~~ 87 (102)
.+.+..+.++.|++.... .+-....+.+..++|++| .+. ..++. ..+..-|+.+-+.+|++..
T Consensus 217 ~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~-~~~el~K~k~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 217 FPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKIS-SESELDKLKGLPLEELVLEGNPLCT 284 (585)
T ss_pred CcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhc-chhhhhhhcCCCHHHeeecCCcccc
Confidence 345566677777765311 112345567778888877 333 11211 1123456777777777654
No 84
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=60.16 E-value=8 Score=31.61 Aligned_cols=34 Identities=15% Similarity=0.180 Sum_probs=27.4
Q ss_pred EecCCcceecCChhhcCCCCCCEEEeecccceec
Q 034189 7 NLGQNLLTGKIPPSLGRLSSLQTLSLLENGLNGT 40 (102)
Q Consensus 7 ~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~~~~~ 40 (102)
+|++|+|+..-+..|..+.+|+.|+|++|.+...
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~CD 34 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFECD 34 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccccc
Confidence 5789999944445688899999999999988743
No 85
>smart00446 LRRcap occurring C-terminal to leucine-rich repeats. A motif occurring C-terminal to leucine-rich repeats in "sds22-like" and "typical" LRR-containing proteins.
Probab=32.15 E-value=19 Score=13.81 Aligned_cols=12 Identities=33% Similarity=0.468 Sum_probs=6.7
Q ss_pred hcCCCCCcEEEc
Q 034189 45 LGKLSNLQKLRL 56 (102)
Q Consensus 45 ~~~~~~L~~l~l 56 (102)
+..+|+|+.||.
T Consensus 9 i~~LPqL~~LD~ 20 (26)
T smart00446 9 IRLLPQLRKLDX 20 (26)
T ss_pred HHHCCccceecc
Confidence 344566666663
No 86
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=24.28 E-value=23 Score=23.79 Aligned_cols=62 Identities=24% Similarity=0.233 Sum_probs=27.8
Q ss_pred CCCCCEEEeecccceec--CChhhcCCCCCcEEEcccceeceec-----ChhhcCCCCCcEEEccccee
Q 034189 24 LSSLQTLSLLENGLNGT--LPPELGKLSNLQKLRLQSNNLRGDL-----PKDYENLKNLTIFGIAGNYL 85 (102)
Q Consensus 24 l~~L~~l~l~~n~~~~~--~~~~~~~~~~L~~l~l~~n~~~~~~-----p~~~~~~~~L~~l~l~~n~~ 85 (102)
+++|+.+++........ +...-..++.|+.+.++++...... ...-..+..+..+.+++++.
T Consensus 345 ~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~ 413 (483)
T KOG4341|consen 345 CPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPL 413 (483)
T ss_pred ChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCC
Confidence 44555555544432211 1222345666777777766432110 11112344556666665543
Done!