Query 034189
Match_columns 102
No_of_seqs 109 out of 2342
Neff 11.2
Searched_HMMs 29240
Date Mon Mar 25 18:24:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034189.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034189hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1w8a_A SLIT protein; signaling 99.7 1.3E-17 4.5E-22 94.2 8.3 100 3-102 31-131 (192)
2 2v70_A SLIT-2, SLIT homolog 2 99.7 2E-17 6.7E-22 95.3 8.4 98 4-101 60-157 (220)
3 2wfh_A SLIT homolog 2 protein 99.7 2.7E-17 9.3E-22 93.1 8.7 98 3-101 33-130 (193)
4 1ogq_A PGIP-2, polygalacturona 99.7 4.1E-17 1.4E-21 98.1 9.5 96 5-100 54-152 (313)
5 1ogq_A PGIP-2, polygalacturona 99.7 5E-17 1.7E-21 97.7 9.4 99 3-101 78-178 (313)
6 2v9t_B SLIT homolog 2 protein 99.7 4.5E-17 1.5E-21 93.8 8.3 95 5-100 60-155 (220)
7 2v9t_B SLIT homolog 2 protein 99.7 4.9E-17 1.7E-21 93.6 8.3 100 3-102 34-133 (220)
8 4g8a_A TOLL-like receptor 4; l 99.7 5.5E-17 1.9E-21 104.1 7.9 100 3-102 54-153 (635)
9 3rgz_A Protein brassinosteroid 99.7 9E-17 3.1E-21 106.0 8.9 89 3-91 634-722 (768)
10 3e6j_A Variable lymphocyte rec 99.7 1.3E-16 4.4E-21 92.3 8.5 96 4-100 43-138 (229)
11 4fcg_A Uncharacterized protein 99.7 1.5E-16 5.1E-21 96.3 8.0 97 4-101 209-305 (328)
12 2v70_A SLIT-2, SLIT homolog 2 99.7 2.6E-16 8.7E-21 90.6 7.9 100 3-102 34-134 (220)
13 3e6j_A Variable lymphocyte rec 99.7 3.6E-16 1.2E-20 90.4 8.5 98 3-101 66-163 (229)
14 2o6r_A Variable lymphocyte rec 99.7 4.1E-16 1.4E-20 86.9 8.4 99 3-101 30-128 (177)
15 3g39_A Variable lymphocyte rec 99.7 2.8E-16 9.6E-21 87.3 7.6 83 4-86 33-115 (170)
16 3rgz_A Protein brassinosteroid 99.7 4.2E-16 1.4E-20 102.8 9.3 98 4-101 445-542 (768)
17 3m19_A Variable lymphocyte rec 99.7 4.5E-16 1.6E-20 90.9 8.3 16 71-86 153-168 (251)
18 3m19_A Variable lymphocyte rec 99.7 5.6E-16 1.9E-20 90.5 8.3 98 4-101 62-159 (251)
19 4fcg_A Uncharacterized protein 99.7 3.3E-16 1.1E-20 94.8 7.5 98 3-102 185-282 (328)
20 2o6s_A Variable lymphocyte rec 99.7 9E-16 3.1E-20 87.4 8.4 97 4-100 31-127 (208)
21 2o6s_A Variable lymphocyte rec 99.7 9.4E-16 3.2E-20 87.3 8.3 99 3-101 54-152 (208)
22 2xot_A Amphoterin-induced prot 99.6 9.3E-16 3.2E-20 93.8 8.7 97 4-100 42-139 (361)
23 2r9u_A Variable lymphocyte rec 99.6 9.1E-16 3.1E-20 85.6 7.8 82 4-86 36-118 (174)
24 3rfs_A Internalin B, repeat mo 99.6 1.2E-15 4E-20 90.1 8.5 97 4-100 112-208 (272)
25 3v47_A TOLL-like receptor 5B a 99.6 1.2E-15 4E-20 95.3 8.7 96 5-100 303-398 (455)
26 3v47_A TOLL-like receptor 5B a 99.6 1.2E-15 4.2E-20 95.2 8.8 100 3-102 277-376 (455)
27 3rfs_A Internalin B, repeat mo 99.6 1.3E-15 4.3E-20 90.0 8.3 99 3-101 87-185 (272)
28 2je0_A Acidic leucine-rich nuc 99.6 5.4E-16 1.8E-20 84.2 6.1 81 4-86 20-101 (149)
29 2ell_A Acidic leucine-rich nuc 99.6 8.4E-16 2.9E-20 85.0 6.4 95 4-101 52-151 (168)
30 1ozn_A Reticulon 4 receptor; N 99.6 3.1E-15 1E-19 88.7 9.0 96 5-100 109-204 (285)
31 2je0_A Acidic leucine-rich nuc 99.6 5.1E-16 1.8E-20 84.3 5.1 98 3-102 44-145 (149)
32 1w8a_A SLIT protein; signaling 99.6 2.5E-15 8.6E-20 84.8 8.0 88 3-90 56-143 (192)
33 2ell_A Acidic leucine-rich nuc 99.6 1.5E-15 5E-20 84.0 6.9 98 3-102 26-125 (168)
34 3t6q_A CD180 antigen; protein- 99.6 1.8E-15 6.2E-20 97.3 7.9 99 3-101 35-133 (606)
35 3g39_A Variable lymphocyte rec 99.6 3.2E-15 1.1E-19 83.0 7.9 96 4-102 12-107 (170)
36 1ozn_A Reticulon 4 receptor; N 99.6 3.9E-15 1.3E-19 88.3 8.6 99 3-101 131-229 (285)
37 3vq2_A TLR4, TOLL-like recepto 99.6 2.3E-15 8E-20 96.7 8.1 98 4-101 59-157 (606)
38 3zyi_A Leucine-rich repeat-con 99.6 3.5E-15 1.2E-19 93.4 8.6 99 3-101 77-175 (452)
39 4g8a_A TOLL-like receptor 4; l 99.6 2.8E-15 9.5E-20 96.3 8.3 99 3-101 78-177 (635)
40 3vq2_A TLR4, TOLL-like recepto 99.6 2E-15 6.8E-20 97.1 7.6 100 3-102 34-133 (606)
41 1dce_A Protein (RAB geranylger 99.6 2.1E-15 7.3E-20 96.9 7.7 93 4-101 444-537 (567)
42 1p9a_G Platelet glycoprotein I 99.6 3.6E-15 1.2E-19 88.9 8.1 96 4-100 80-175 (290)
43 2id5_A Lingo-1, leucine rich r 99.6 3.2E-15 1.1E-19 93.9 8.2 98 4-101 35-132 (477)
44 2xot_A Amphoterin-induced prot 99.6 4.8E-15 1.6E-19 90.6 8.7 99 3-101 66-167 (361)
45 4ezg_A Putative uncharacterize 99.6 3.4E-15 1.2E-19 84.5 6.9 93 4-100 91-184 (197)
46 2z81_A CD282 antigen, TOLL-lik 99.6 2.6E-15 8.9E-20 95.5 7.0 99 3-101 28-127 (549)
47 2o6q_A Variable lymphocyte rec 99.6 7.5E-15 2.6E-19 86.6 8.5 96 5-100 113-208 (270)
48 4b8c_D Glucose-repressible alc 99.6 1.2E-15 3.9E-20 100.4 5.4 96 3-102 226-321 (727)
49 2z62_A TOLL-like receptor 4, v 99.6 6.3E-15 2.2E-19 87.0 8.0 97 5-101 56-153 (276)
50 2o6q_A Variable lymphocyte rec 99.6 8.3E-15 2.8E-19 86.4 8.4 83 4-86 64-146 (270)
51 2r9u_A Variable lymphocyte rec 99.6 8.5E-15 2.9E-19 81.6 7.9 96 4-102 15-110 (174)
52 2z7x_B TOLL-like receptor 1, v 99.6 3.5E-15 1.2E-19 94.6 7.0 97 3-102 23-120 (520)
53 2wfh_A SLIT homolog 2 protein 99.6 1E-14 3.4E-19 82.5 8.1 95 4-102 13-107 (193)
54 2z66_A Variable lymphocyte rec 99.6 6.4E-15 2.2E-19 88.1 7.7 10 50-59 176-185 (306)
55 3oja_B Anopheles plasmodium-re 99.6 7E-15 2.4E-19 94.8 8.3 100 3-102 77-176 (597)
56 4eco_A Uncharacterized protein 99.6 3.1E-15 1.1E-19 97.1 6.7 61 41-101 198-277 (636)
57 2z62_A TOLL-like receptor 4, v 99.6 9.1E-15 3.1E-19 86.3 8.1 97 4-100 31-127 (276)
58 2id5_A Lingo-1, leucine rich r 99.6 7.9E-15 2.7E-19 92.2 8.3 98 3-101 58-156 (477)
59 3zyj_A Leucine-rich repeat-con 99.6 1E-14 3.4E-19 91.1 8.6 99 3-101 66-164 (440)
60 3a79_B TLR6, VLRB.59, TOLL-lik 99.6 9.4E-15 3.2E-19 93.5 8.5 97 3-102 54-151 (562)
61 1a9n_A U2A', U2A'; complex (nu 99.6 4.3E-15 1.5E-19 82.8 6.0 80 4-86 22-101 (176)
62 4ezg_A Putative uncharacterize 99.6 1.4E-14 4.7E-19 82.0 8.0 94 4-101 69-163 (197)
63 1p9a_G Platelet glycoprotein I 99.6 1.3E-14 4.4E-19 86.6 8.2 98 3-101 102-199 (290)
64 3o6n_A APL1; leucine-rich repe 99.6 1.2E-14 4.2E-19 89.4 8.2 98 3-101 71-169 (390)
65 2z66_A Variable lymphocyte rec 99.6 2E-14 6.9E-19 85.9 8.4 99 3-101 103-203 (306)
66 2z63_A TOLL-like receptor 4, v 99.6 9.5E-15 3.3E-19 93.2 7.4 98 4-101 424-522 (570)
67 1a9n_A U2A', U2A'; complex (nu 99.6 2.6E-14 9E-19 79.6 8.3 96 3-102 44-145 (176)
68 2z80_A TOLL-like receptor 2, v 99.6 1.1E-14 3.8E-19 88.6 7.1 97 4-101 55-153 (353)
69 3j0a_A TOLL-like receptor 5; m 99.6 1.1E-14 3.7E-19 97.0 7.3 97 4-100 27-126 (844)
70 4eco_A Uncharacterized protein 99.5 4E-15 1.4E-19 96.6 4.7 98 3-101 208-334 (636)
71 2z63_A TOLL-like receptor 4, v 99.5 2.2E-14 7.7E-19 91.5 8.0 97 5-101 56-153 (570)
72 1dce_A Protein (RAB geranylger 99.5 2.1E-14 7.2E-19 92.3 7.7 97 3-102 465-565 (567)
73 2ifg_A High affinity nerve gro 99.5 4.5E-14 1.5E-18 85.7 8.4 87 6-94 13-101 (347)
74 1ziw_A TOLL-like receptor 3; i 99.5 1.8E-14 6.3E-19 93.7 7.0 95 5-100 53-148 (680)
75 2xwt_C Thyrotropin receptor; s 99.5 2.9E-14 9.8E-19 82.7 7.2 95 3-99 33-129 (239)
76 1ziw_A TOLL-like receptor 3; i 99.5 2.1E-14 7.1E-19 93.4 6.8 100 3-102 27-126 (680)
77 4ecn_A Leucine-rich repeat pro 99.5 1.5E-14 5E-19 96.8 5.9 61 41-101 440-519 (876)
78 3zyj_A Leucine-rich repeat-con 99.5 4.9E-14 1.7E-18 88.0 7.9 97 3-101 187-283 (440)
79 1wwl_A Monocyte differentiatio 99.5 8.3E-15 2.8E-19 88.0 4.3 98 3-101 97-205 (312)
80 2ft3_A Biglycan; proteoglycan, 99.5 6.4E-14 2.2E-18 84.6 8.1 96 3-101 56-151 (332)
81 3t6q_A CD180 antigen; protein- 99.5 3.6E-14 1.2E-18 91.3 7.2 85 3-87 59-143 (606)
82 2z80_A TOLL-like receptor 2, v 99.5 4.7E-14 1.6E-18 85.8 6.9 97 3-101 78-178 (353)
83 1xku_A Decorin; proteoglycan, 99.5 9.2E-14 3.1E-18 83.8 8.0 94 4-100 55-148 (330)
84 2o6r_A Variable lymphocyte rec 99.5 1.3E-13 4.4E-18 76.7 7.8 96 4-102 10-105 (177)
85 4b8c_D Glucose-repressible alc 99.5 8.7E-15 3E-19 96.3 3.4 90 3-95 249-338 (727)
86 2z81_A CD282 antigen, TOLL-lik 99.5 4.8E-14 1.6E-18 89.7 6.7 99 3-101 52-152 (549)
87 2xwt_C Thyrotropin receptor; s 99.5 1.1E-13 3.9E-18 80.2 7.5 96 3-100 57-158 (239)
88 3zyi_A Leucine-rich repeat-con 99.5 1.8E-13 6.3E-18 85.7 8.7 99 3-101 101-200 (452)
89 1xku_A Decorin; proteoglycan, 99.5 1.8E-13 6.3E-18 82.5 8.2 84 4-88 195-278 (330)
90 4ecn_A Leucine-rich repeat pro 99.5 1.9E-14 6.4E-19 96.3 4.1 98 3-101 450-577 (876)
91 3o6n_A APL1; leucine-rich repe 99.5 1.1E-13 3.7E-18 85.2 7.0 100 3-102 47-146 (390)
92 3j0a_A TOLL-like receptor 5; m 99.5 1.8E-13 6.3E-18 91.2 8.0 100 3-102 268-367 (844)
93 3oja_B Anopheles plasmodium-re 99.5 1.4E-13 4.8E-18 88.8 7.2 99 4-102 54-152 (597)
94 2z7x_B TOLL-like receptor 1, v 99.5 1.4E-13 4.6E-18 87.3 6.9 93 3-101 2-94 (520)
95 2ifg_A High affinity nerve gro 99.4 4.6E-13 1.6E-17 81.3 7.7 84 3-87 33-117 (347)
96 1wwl_A Monocyte differentiatio 99.4 2.8E-14 9.6E-19 85.7 2.3 98 4-102 66-178 (312)
97 3o53_A Protein LRIM1, AGAP0063 99.4 3.6E-13 1.2E-17 81.0 7.1 94 4-101 147-241 (317)
98 3oja_A Leucine-rich immune mol 99.4 3.2E-13 1.1E-17 85.5 7.1 93 4-100 147-240 (487)
99 3oja_A Leucine-rich immune mol 99.4 2.5E-13 8.6E-18 86.0 6.1 97 3-102 122-219 (487)
100 2ft3_A Biglycan; proteoglycan, 99.4 1.7E-13 5.7E-18 82.8 5.0 84 4-88 196-279 (332)
101 3a79_B TLR6, VLRB.59, TOLL-lik 99.4 6.9E-13 2.4E-17 84.9 8.0 93 4-102 34-126 (562)
102 4glp_A Monocyte differentiatio 99.4 3.4E-13 1.2E-17 80.9 5.7 99 3-101 93-201 (310)
103 3o53_A Protein LRIM1, AGAP0063 99.4 7.5E-13 2.6E-17 79.6 6.1 97 3-102 122-219 (317)
104 1xeu_A Internalin C; cellular 99.4 3.3E-12 1.1E-16 75.2 8.0 88 4-100 66-153 (263)
105 4fmz_A Internalin; leucine ric 99.4 2.2E-12 7.6E-17 78.1 7.2 90 5-100 247-336 (347)
106 1h6u_A Internalin H; cell adhe 99.4 4E-12 1.4E-16 76.3 8.2 76 5-86 67-142 (308)
107 1h6t_A Internalin B; cell adhe 99.4 5.2E-12 1.8E-16 75.3 8.3 77 4-86 71-147 (291)
108 1h6t_A Internalin B; cell adhe 99.4 4.6E-12 1.6E-16 75.6 7.9 88 5-100 116-203 (291)
109 4glp_A Monocyte differentiatio 99.4 2.7E-13 9.3E-18 81.3 2.6 93 3-96 147-247 (310)
110 4fmz_A Internalin; leucine ric 99.3 5E-12 1.7E-16 76.6 7.9 94 3-102 223-316 (347)
111 1ds9_A Outer arm dynein; leuci 99.3 1.9E-14 6.5E-19 81.5 -2.6 78 4-86 51-128 (198)
112 1h6u_A Internalin H; cell adhe 99.3 6.6E-12 2.3E-16 75.4 8.0 15 23-37 105-119 (308)
113 1xeu_A Internalin C; cellular 99.3 7.2E-12 2.5E-16 73.8 7.8 91 3-102 43-133 (263)
114 4ay9_X Follicle-stimulating ho 99.3 7.2E-12 2.5E-16 76.3 7.1 88 3-90 32-121 (350)
115 2ast_B S-phase kinase-associat 99.3 3.1E-13 1.1E-17 81.5 0.5 82 5-86 97-182 (336)
116 1ds9_A Outer arm dynein; leuci 99.3 4E-14 1.4E-18 80.1 -3.3 96 3-102 72-179 (198)
117 1m9s_A Internalin B; cell inva 99.3 1.6E-11 5.4E-16 79.7 8.2 89 4-100 112-200 (605)
118 1m9s_A Internalin B; cell inva 99.3 1.8E-11 6.1E-16 79.4 8.2 74 21-100 105-178 (605)
119 1o6v_A Internalin A; bacterial 99.3 2.1E-11 7.2E-16 76.6 8.2 89 4-100 71-159 (466)
120 2ast_B S-phase kinase-associat 99.3 1.9E-12 6.3E-17 78.1 2.4 98 4-102 73-173 (336)
121 3bz5_A Internalin-J, INLJ; leu 99.2 2.9E-11 1E-15 76.1 7.7 88 3-101 44-131 (457)
122 1o6v_A Internalin A; bacterial 99.2 3.4E-11 1.2E-15 75.7 7.5 73 22-100 306-378 (466)
123 2ca6_A RAN GTPase-activating p 99.2 3.2E-12 1.1E-16 78.6 1.6 84 4-87 190-288 (386)
124 3cvr_A Invasion plasmid antige 99.2 6.1E-11 2.1E-15 76.5 6.9 41 52-93 210-250 (571)
125 3goz_A Leucine-rich repeat-con 99.2 6.9E-12 2.4E-16 76.7 2.4 87 3-89 24-125 (362)
126 3cvr_A Invasion plasmid antige 99.2 2.8E-11 9.5E-16 78.1 5.0 87 3-102 142-235 (571)
127 3g06_A SSPH2 (leucine-rich rep 99.2 3.7E-11 1.3E-15 78.2 5.3 81 5-94 225-305 (622)
128 3bz5_A Internalin-J, INLJ; leu 99.2 1.2E-10 4.2E-15 73.3 7.3 86 3-100 66-151 (457)
129 3goz_A Leucine-rich repeat-con 99.2 1.2E-11 4.1E-16 75.6 2.6 97 5-101 2-113 (362)
130 3sb4_A Hypothetical leucine ri 99.2 1.7E-10 5.7E-15 69.7 7.5 98 3-102 228-326 (329)
131 4ay9_X Follicle-stimulating ho 99.1 2.3E-10 7.8E-15 69.7 7.5 94 5-102 13-109 (350)
132 2ca6_A RAN GTPase-activating p 99.1 1.9E-11 6.5E-16 75.2 1.8 99 3-101 161-278 (386)
133 3g06_A SSPH2 (leucine-rich rep 99.1 4.6E-10 1.6E-14 73.1 7.7 69 25-102 221-289 (622)
134 1jl5_A Outer protein YOPM; leu 99.0 2.9E-10 1E-14 71.5 4.8 59 25-87 337-410 (454)
135 1jl5_A Outer protein YOPM; leu 99.0 7.1E-10 2.4E-14 69.8 6.5 75 4-86 134-208 (454)
136 1z7x_W Ribonuclease inhibitor; 99.0 2.3E-11 8E-16 76.0 -0.8 37 50-86 371-411 (461)
137 1z7x_W Ribonuclease inhibitor; 99.0 8E-11 2.7E-15 73.6 0.3 100 3-102 286-403 (461)
138 3rw6_A Nuclear RNA export fact 98.9 2.3E-10 7.9E-15 67.6 1.1 78 22-101 167-255 (267)
139 3un9_A NLR family member X1; l 98.8 1.1E-09 3.8E-14 67.4 2.0 63 24-86 154-224 (372)
140 3rw6_A Nuclear RNA export fact 98.7 2E-08 7E-13 59.4 4.0 77 3-80 172-258 (267)
141 3e4g_A ATP synthase subunit S, 98.7 1.9E-08 6.3E-13 56.1 3.6 84 3-86 63-153 (176)
142 3un9_A NLR family member X1; l 98.7 3.1E-09 1.1E-13 65.5 0.2 93 3-95 157-261 (372)
143 3ogk_B Coronatine-insensitive 98.6 9.3E-09 3.2E-13 66.1 0.3 77 23-100 162-246 (592)
144 1io0_A Tropomodulin; LRR prote 98.5 1.6E-08 5.5E-13 56.7 1.0 86 3-88 38-138 (185)
145 3sb4_A Hypothetical leucine ri 98.5 5.6E-07 1.9E-11 54.4 6.9 77 24-102 225-302 (329)
146 3e4g_A ATP synthase subunit S, 98.5 6.5E-08 2.2E-12 54.0 2.3 79 24-102 60-144 (176)
147 2p1m_B Transport inhibitor res 98.4 4.1E-08 1.4E-12 63.1 0.1 63 24-86 455-519 (594)
148 3ogk_B Coronatine-insensitive 98.4 4E-07 1.4E-11 58.5 4.2 53 3-56 194-250 (592)
149 2p1m_B Transport inhibitor res 98.3 2.8E-07 9.6E-12 59.2 3.1 59 4-62 108-169 (594)
150 1io0_A Tropomodulin; LRR prote 98.2 3.3E-07 1.1E-11 51.3 0.8 85 3-87 67-165 (185)
151 4fdw_A Leucine rich hypothetic 98.1 2.1E-05 7.1E-10 49.0 7.7 64 18-82 264-332 (401)
152 4fdw_A Leucine rich hypothetic 97.9 5.6E-05 1.9E-09 47.1 7.4 92 3-97 273-369 (401)
153 4h09_A Hypothetical leucine ri 97.9 0.00025 8.6E-09 43.5 9.3 78 21-100 259-336 (379)
154 2ra8_A Uncharacterized protein 97.8 4.7E-06 1.6E-10 51.3 1.5 40 48-87 251-293 (362)
155 4fs7_A Uncharacterized protein 97.7 0.00015 5E-09 44.9 6.9 80 18-101 313-392 (394)
156 4gt6_A Cell surface protein; l 97.7 0.00053 1.8E-08 42.4 8.9 78 21-101 284-361 (394)
157 3rfe_A Platelet glycoprotein I 97.7 0.00013 4.5E-09 38.6 5.0 55 5-62 12-68 (130)
158 4h09_A Hypothetical leucine ri 97.5 0.0012 4.1E-08 40.5 8.2 80 17-98 278-357 (379)
159 2ra8_A Uncharacterized protein 97.4 2.7E-05 9.2E-10 48.0 0.5 67 23-89 250-323 (362)
160 3rfe_A Platelet glycoprotein I 97.4 0.0004 1.4E-08 36.7 4.9 56 29-86 12-68 (130)
161 4fs7_A Uncharacterized protein 97.3 0.00096 3.3E-08 41.2 6.7 79 20-101 292-370 (394)
162 4gt6_A Cell surface protein; l 97.0 0.0068 2.3E-07 37.5 7.9 81 18-101 258-338 (394)
163 1pgv_A TMD-1, tropomodulin TMD 96.9 0.00041 1.4E-08 39.3 2.0 81 3-83 43-136 (197)
164 1pgv_A TMD-1, tropomodulin TMD 96.4 0.0015 5.3E-08 37.0 1.8 69 21-89 37-114 (197)
165 2lz0_A Uncharacterized protein 73.2 6.9 0.00023 19.4 5.8 49 10-59 5-53 (100)
No 1
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.74 E-value=1.3e-17 Score=94.22 Aligned_cols=100 Identities=26% Similarity=0.312 Sum_probs=84.3
Q ss_pred eEEEEecCCcceecCCh-hhcCCCCCCEEEeecccceecCChhhcCCCCCcEEEcccceeceecChhhcCCCCCcEEEcc
Q 034189 3 SCRSNLGQNLLTGKIPP-SLGRLSSLQTLSLLENGLNGTLPPELGKLSNLQKLRLQSNNLRGDLPKDYENLKNLTIFGIA 81 (102)
Q Consensus 3 ~~~L~l~~n~~~~~~~~-~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~p~~~~~~~~L~~l~l~ 81 (102)
.++|++++|.+++..+. .+..+++|+.+++++|.+++..|..+..+++|+.+++++|++.+..+..+..+++|++++++
T Consensus 31 l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 110 (192)
T 1w8a_A 31 TTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLY 110 (192)
T ss_dssp CSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECC
T ss_pred CCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECC
Confidence 46789999999854443 48889999999999999997667788899999999999999997767778889999999999
Q ss_pred cceeeeecchhhhccCCceeC
Q 034189 82 GNYLSGRIPTFIAKWVNLYAL 102 (102)
Q Consensus 82 ~n~~~~~~~~~~~~l~~L~~l 102 (102)
+|.+++..|..+..+++|+.|
T Consensus 111 ~N~l~~~~~~~~~~l~~L~~L 131 (192)
T 1w8a_A 111 DNQISCVMPGSFEHLNSLTSL 131 (192)
T ss_dssp SSCCCEECTTSSTTCTTCCEE
T ss_pred CCcCCeeCHHHhhcCCCCCEE
Confidence 999998888888888887753
No 2
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.73 E-value=2e-17 Score=95.26 Aligned_cols=98 Identities=17% Similarity=0.203 Sum_probs=62.8
Q ss_pred EEEEecCCcceecCChhhcCCCCCCEEEeecccceecCChhhcCCCCCcEEEcccceeceecChhhcCCCCCcEEEcccc
Q 034189 4 CRSNLGQNLLTGKIPPSLGRLSSLQTLSLLENGLNGTLPPELGKLSNLQKLRLQSNNLRGDLPKDYENLKNLTIFGIAGN 83 (102)
Q Consensus 4 ~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~p~~~~~~~~L~~l~l~~n 83 (102)
++|++++|.+++..+..|..+++|+.+++++|.+++..+..+..+++|+.+++++|++.+..|..+..+++|+++++++|
T Consensus 60 ~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N 139 (220)
T 2v70_A 60 RKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDN 139 (220)
T ss_dssp CEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTS
T ss_pred CEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCC
Confidence 45666666666544455666666666666666666443444666667777777777766555566666677777777777
Q ss_pred eeeeecchhhhccCCcee
Q 034189 84 YLSGRIPTFIAKWVNLYA 101 (102)
Q Consensus 84 ~~~~~~~~~~~~l~~L~~ 101 (102)
.+++..|..+..+++|+.
T Consensus 140 ~l~~~~~~~~~~l~~L~~ 157 (220)
T 2v70_A 140 QITTVAPGAFDTLHSLST 157 (220)
T ss_dssp CCCCBCTTTTTTCTTCCE
T ss_pred cCCEECHHHhcCCCCCCE
Confidence 776555666666666654
No 3
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.73 E-value=2.7e-17 Score=93.06 Aligned_cols=98 Identities=22% Similarity=0.294 Sum_probs=83.9
Q ss_pred eEEEEecCCcceecCChhhcCCCCCCEEEeecccceecCChhhcCCCCCcEEEcccceeceecChhhcCCCCCcEEEccc
Q 034189 3 SCRSNLGQNLLTGKIPPSLGRLSSLQTLSLLENGLNGTLPPELGKLSNLQKLRLQSNNLRGDLPKDYENLKNLTIFGIAG 82 (102)
Q Consensus 3 ~~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~p~~~~~~~~L~~l~l~~ 82 (102)
+++|++++|.++ .+|..+..+++|+.+++++|.+++..+..+..+++|+.+++++|+++...|..|..+++|++|++++
T Consensus 33 l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~ 111 (193)
T 2wfh_A 33 VTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHG 111 (193)
T ss_dssp CCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCS
T ss_pred CCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCC
Confidence 467999999998 7888899999999999999999965556788999999999999999966667889999999999999
Q ss_pred ceeeeecchhhhccCCcee
Q 034189 83 NYLSGRIPTFIAKWVNLYA 101 (102)
Q Consensus 83 n~~~~~~~~~~~~l~~L~~ 101 (102)
|.++...+..+..+++|+.
T Consensus 112 N~l~~~~~~~~~~l~~L~~ 130 (193)
T 2wfh_A 112 NDISVVPEGAFNDLSALSH 130 (193)
T ss_dssp SCCCBCCTTTTTTCTTCCE
T ss_pred CCCCeeChhhhhcCccccE
Confidence 9999554556777887765
No 4
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.73 E-value=4.1e-17 Score=98.10 Aligned_cols=96 Identities=32% Similarity=0.473 Sum_probs=44.8
Q ss_pred EEEecCCccee--cCChhhcCCCCCCEEEeec-ccceecCChhhcCCCCCcEEEcccceeceecChhhcCCCCCcEEEcc
Q 034189 5 RSNLGQNLLTG--KIPPSLGRLSSLQTLSLLE-NGLNGTLPPELGKLSNLQKLRLQSNNLRGDLPKDYENLKNLTIFGIA 81 (102)
Q Consensus 5 ~L~l~~n~~~~--~~~~~~~~l~~L~~l~l~~-n~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~p~~~~~~~~L~~l~l~ 81 (102)
.|++++|.+++ .+|..+..+++|+.+++++ |.+.+.+|..+..+++|+++++++|++.+..|..+..+++|++++++
T Consensus 54 ~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls 133 (313)
T 1ogq_A 54 NLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFS 133 (313)
T ss_dssp EEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECC
T ss_pred EEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCC
Confidence 44555555544 4444444445555555442 44444444444444444444444444444444444444444444444
Q ss_pred cceeeeecchhhhccCCce
Q 034189 82 GNYLSGRIPTFIAKWVNLY 100 (102)
Q Consensus 82 ~n~~~~~~~~~~~~l~~L~ 100 (102)
+|.+.+.+|..+..+++|+
T Consensus 134 ~N~l~~~~p~~~~~l~~L~ 152 (313)
T 1ogq_A 134 YNALSGTLPPSISSLPNLV 152 (313)
T ss_dssp SSEEESCCCGGGGGCTTCC
T ss_pred CCccCCcCChHHhcCCCCC
Confidence 4444444444444444443
No 5
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.72 E-value=5e-17 Score=97.74 Aligned_cols=99 Identities=29% Similarity=0.481 Sum_probs=91.7
Q ss_pred eEEEEecC-CcceecCChhhcCCCCCCEEEeecccceecCChhhcCCCCCcEEEcccceeceecChhhcCCCCCcEEEcc
Q 034189 3 SCRSNLGQ-NLLTGKIPPSLGRLSSLQTLSLLENGLNGTLPPELGKLSNLQKLRLQSNNLRGDLPKDYENLKNLTIFGIA 81 (102)
Q Consensus 3 ~~~L~l~~-n~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~p~~~~~~~~L~~l~l~ 81 (102)
.++|++++ |.+.+.+|..+..+++|+.+++++|.+++..|..+..+++|+++++++|++.+..|..+..+++|++++++
T Consensus 78 L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~ 157 (313)
T 1ogq_A 78 LNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFD 157 (313)
T ss_dssp CSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECC
T ss_pred CCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECc
Confidence 46899995 99998999999999999999999999998889999999999999999999998889999999999999999
Q ss_pred cceeeeecchhhhccC-Ccee
Q 034189 82 GNYLSGRIPTFIAKWV-NLYA 101 (102)
Q Consensus 82 ~n~~~~~~~~~~~~l~-~L~~ 101 (102)
+|.+++.+|..+..++ +|+.
T Consensus 158 ~N~l~~~~p~~l~~l~~~L~~ 178 (313)
T 1ogq_A 158 GNRISGAIPDSYGSFSKLFTS 178 (313)
T ss_dssp SSCCEEECCGGGGCCCTTCCE
T ss_pred CCcccCcCCHHHhhhhhcCcE
Confidence 9999999999998887 7765
No 6
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.72 E-value=4.5e-17 Score=93.76 Aligned_cols=95 Identities=24% Similarity=0.320 Sum_probs=44.3
Q ss_pred EEEecCCcceecCChhhcCCCCCCEEEeecccceecCCh-hhcCCCCCcEEEcccceeceecChhhcCCCCCcEEEcccc
Q 034189 5 RSNLGQNLLTGKIPPSLGRLSSLQTLSLLENGLNGTLPP-ELGKLSNLQKLRLQSNNLRGDLPKDYENLKNLTIFGIAGN 83 (102)
Q Consensus 5 ~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~-~~~~~~~L~~l~l~~n~~~~~~p~~~~~~~~L~~l~l~~n 83 (102)
+|++++|.+++..|..|..+++|+.+++++|.++ .+|. .+..+++|+.+++++|++....|..+..+++|+++++++|
T Consensus 60 ~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 138 (220)
T 2v9t_B 60 RIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT-ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDN 138 (220)
T ss_dssp EEECCSSCCCEECTTTTTTCSSCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred EEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCC-ccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCC
Confidence 4444444444433444444444555555555444 2222 2344445555555555544333444445555555555555
Q ss_pred eeeeecchhhhccCCce
Q 034189 84 YLSGRIPTFIAKWVNLY 100 (102)
Q Consensus 84 ~~~~~~~~~~~~l~~L~ 100 (102)
.+++..+..+..+++|+
T Consensus 139 ~l~~~~~~~~~~l~~L~ 155 (220)
T 2v9t_B 139 KLQTIAKGTFSPLRAIQ 155 (220)
T ss_dssp CCSCCCTTTTTTCTTCC
T ss_pred cCCEECHHHHhCCCCCC
Confidence 55533333444444443
No 7
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.71 E-value=4.9e-17 Score=93.58 Aligned_cols=100 Identities=20% Similarity=0.204 Sum_probs=87.1
Q ss_pred eEEEEecCCcceecCChhhcCCCCCCEEEeecccceecCChhhcCCCCCcEEEcccceeceecChhhcCCCCCcEEEccc
Q 034189 3 SCRSNLGQNLLTGKIPPSLGRLSSLQTLSLLENGLNGTLPPELGKLSNLQKLRLQSNNLRGDLPKDYENLKNLTIFGIAG 82 (102)
Q Consensus 3 ~~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~p~~~~~~~~L~~l~l~~ 82 (102)
.++|++++|.+++..+..|..+++|+.+++++|.+++..|..+..+++|+++++++|+++...+..+..+++|+.|++++
T Consensus 34 l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 113 (220)
T 2v9t_B 34 ITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNA 113 (220)
T ss_dssp CCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCC
Confidence 46899999999976666899999999999999999977788899999999999999999944445578899999999999
Q ss_pred ceeeeecchhhhccCCceeC
Q 034189 83 NYLSGRIPTFIAKWVNLYAL 102 (102)
Q Consensus 83 n~~~~~~~~~~~~l~~L~~l 102 (102)
|.+.+..+..|..+++|+.|
T Consensus 114 N~l~~~~~~~~~~l~~L~~L 133 (220)
T 2v9t_B 114 NKINCLRVDAFQDLHNLNLL 133 (220)
T ss_dssp SCCCCCCTTTTTTCTTCCEE
T ss_pred CCCCEeCHHHcCCCCCCCEE
Confidence 99997778888888888753
No 8
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.70 E-value=5.5e-17 Score=104.14 Aligned_cols=100 Identities=20% Similarity=0.108 Sum_probs=77.2
Q ss_pred eEEEEecCCcceecCChhhcCCCCCCEEEeecccceecCChhhcCCCCCcEEEcccceeceecChhhcCCCCCcEEEccc
Q 034189 3 SCRSNLGQNLLTGKIPPSLGRLSSLQTLSLLENGLNGTLPPELGKLSNLQKLRLQSNNLRGDLPKDYENLKNLTIFGIAG 82 (102)
Q Consensus 3 ~~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~p~~~~~~~~L~~l~l~~ 82 (102)
+++|++++|.+++..+..|..+++|+.|++++|.+++..+..|..+++|+++++++|+++...+..|.++++|++|++++
T Consensus 54 ~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~ 133 (635)
T 4g8a_A 54 TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVE 133 (635)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTT
T ss_pred CCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCC
Confidence 46788899988865566788888899999988888855455688888888888888888854445678888888888888
Q ss_pred ceeeeecchhhhccCCceeC
Q 034189 83 NYLSGRIPTFIAKWVNLYAL 102 (102)
Q Consensus 83 n~~~~~~~~~~~~l~~L~~l 102 (102)
|.+++..+..|+++++|+.|
T Consensus 134 N~l~~l~~~~~~~L~~L~~L 153 (635)
T 4g8a_A 134 TNLASLENFPIGHLKTLKEL 153 (635)
T ss_dssp SCCCCSTTCCCTTCTTCCEE
T ss_pred CcCCCCChhhhhcCcccCee
Confidence 88875444567777777653
No 9
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.70 E-value=9e-17 Score=105.98 Aligned_cols=89 Identities=36% Similarity=0.591 Sum_probs=84.2
Q ss_pred eEEEEecCCcceecCChhhcCCCCCCEEEeecccceecCChhhcCCCCCcEEEcccceeceecChhhcCCCCCcEEEccc
Q 034189 3 SCRSNLGQNLLTGKIPPSLGRLSSLQTLSLLENGLNGTLPPELGKLSNLQKLRLQSNNLRGDLPKDYENLKNLTIFGIAG 82 (102)
Q Consensus 3 ~~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~p~~~~~~~~L~~l~l~~ 82 (102)
++.|++++|.+++.+|..++.++.|+.+++++|.+++.+|+.+..+++|+.+|+++|++++.+|..+..+++|+++++++
T Consensus 634 L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~ 713 (768)
T 3rgz_A 634 MMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSN 713 (768)
T ss_dssp CCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCS
T ss_pred ccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcC
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeeecch
Q 034189 83 NYLSGRIPT 91 (102)
Q Consensus 83 n~~~~~~~~ 91 (102)
|.++|.+|.
T Consensus 714 N~l~g~iP~ 722 (768)
T 3rgz_A 714 NNLSGPIPE 722 (768)
T ss_dssp SEEEEECCS
T ss_pred CcccccCCC
Confidence 999999885
No 10
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.70 E-value=1.3e-16 Score=92.32 Aligned_cols=96 Identities=24% Similarity=0.211 Sum_probs=53.1
Q ss_pred EEEEecCCcceecCChhhcCCCCCCEEEeecccceecCChhhcCCCCCcEEEcccceeceecChhhcCCCCCcEEEcccc
Q 034189 4 CRSNLGQNLLTGKIPPSLGRLSSLQTLSLLENGLNGTLPPELGKLSNLQKLRLQSNNLRGDLPKDYENLKNLTIFGIAGN 83 (102)
Q Consensus 4 ~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~p~~~~~~~~L~~l~l~~n 83 (102)
++|++++|.+++..+..+..+++|+.|++++|.++...+..+..+++|+.+++++|+++...+..+..+++|+.|++++|
T Consensus 43 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N 122 (229)
T 3e6j_A 43 QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCN 122 (229)
T ss_dssp SEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCC
Confidence 45666666666544555666666666666666665222223455666666666666665333334455555555555555
Q ss_pred eeeeecchhhhccCCce
Q 034189 84 YLSGRIPTFIAKWVNLY 100 (102)
Q Consensus 84 ~~~~~~~~~~~~l~~L~ 100 (102)
.+. .+|..+..+++|+
T Consensus 123 ~l~-~lp~~~~~l~~L~ 138 (229)
T 3e6j_A 123 KLT-ELPRGIERLTHLT 138 (229)
T ss_dssp CCC-SCCTTGGGCTTCS
T ss_pred ccc-ccCcccccCCCCC
Confidence 555 4455555555444
No 11
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.68 E-value=1.5e-16 Score=96.26 Aligned_cols=97 Identities=23% Similarity=0.306 Sum_probs=64.9
Q ss_pred EEEEecCCcceecCChhhcCCCCCCEEEeecccceecCChhhcCCCCCcEEEcccceeceecChhhcCCCCCcEEEcccc
Q 034189 4 CRSNLGQNLLTGKIPPSLGRLSSLQTLSLLENGLNGTLPPELGKLSNLQKLRLQSNNLRGDLPKDYENLKNLTIFGIAGN 83 (102)
Q Consensus 4 ~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~p~~~~~~~~L~~l~l~~n 83 (102)
++|++++|.++ .+|..+..+++|+.+++++|.+.+.+|..+..+++|+.+++++|.+.+..|..+..+++|+++++++|
T Consensus 209 ~~L~L~~N~l~-~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n 287 (328)
T 4fcg_A 209 KSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGC 287 (328)
T ss_dssp CEEEEESSCCC-CCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTC
T ss_pred CEEEccCCCCC-cCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCC
Confidence 45666666666 45555666666666666666666566666666667777777776666566666667777777777777
Q ss_pred eeeeecchhhhccCCcee
Q 034189 84 YLSGRIPTFIAKWVNLYA 101 (102)
Q Consensus 84 ~~~~~~~~~~~~l~~L~~ 101 (102)
.+.+.+|..++++++|+.
T Consensus 288 ~~~~~iP~~l~~L~~L~~ 305 (328)
T 4fcg_A 288 VNLSRLPSLIAQLPANCI 305 (328)
T ss_dssp TTCCCCCGGGGGSCTTCE
T ss_pred CchhhccHHHhhccCceE
Confidence 666677777777766653
No 12
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.67 E-value=2.6e-16 Score=90.60 Aligned_cols=100 Identities=16% Similarity=0.159 Sum_probs=85.8
Q ss_pred eEEEEecCCcceecCC-hhhcCCCCCCEEEeecccceecCChhhcCCCCCcEEEcccceeceecChhhcCCCCCcEEEcc
Q 034189 3 SCRSNLGQNLLTGKIP-PSLGRLSSLQTLSLLENGLNGTLPPELGKLSNLQKLRLQSNNLRGDLPKDYENLKNLTIFGIA 81 (102)
Q Consensus 3 ~~~L~l~~n~~~~~~~-~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~p~~~~~~~~L~~l~l~ 81 (102)
+++|++++|.+++..+ ..+..+++|+.+++++|.+++..+..+..+++|+.+++++|++.+..+..+..+++|++|+++
T Consensus 34 ~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 113 (220)
T 2v70_A 34 TAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLR 113 (220)
T ss_dssp CSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECT
T ss_pred CCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECC
Confidence 3579999999996544 458899999999999999996666678999999999999999996666678999999999999
Q ss_pred cceeeeecchhhhccCCceeC
Q 034189 82 GNYLSGRIPTFIAKWVNLYAL 102 (102)
Q Consensus 82 ~n~~~~~~~~~~~~l~~L~~l 102 (102)
+|.+++..|..+..+++|+.|
T Consensus 114 ~N~l~~~~~~~~~~l~~L~~L 134 (220)
T 2v70_A 114 SNRITCVGNDSFIGLSSVRLL 134 (220)
T ss_dssp TSCCCCBCTTSSTTCTTCSEE
T ss_pred CCcCCeECHhHcCCCccCCEE
Confidence 999997778888888888753
No 13
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.67 E-value=3.6e-16 Score=90.43 Aligned_cols=98 Identities=24% Similarity=0.255 Sum_probs=82.7
Q ss_pred eEEEEecCCcceecCChhhcCCCCCCEEEeecccceecCChhhcCCCCCcEEEcccceeceecChhhcCCCCCcEEEccc
Q 034189 3 SCRSNLGQNLLTGKIPPSLGRLSSLQTLSLLENGLNGTLPPELGKLSNLQKLRLQSNNLRGDLPKDYENLKNLTIFGIAG 82 (102)
Q Consensus 3 ~~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~p~~~~~~~~L~~l~l~~ 82 (102)
.++|++++|.++...+..+..+++|+.+++++|.++...+..+..+++|+.+++++|++. .+|..+..+++|+++++++
T Consensus 66 L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~ 144 (229)
T 3e6j_A 66 LKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQ 144 (229)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCS
T ss_pred CcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCC
Confidence 568999999998444456789999999999999999444445788999999999999999 7888889999999999999
Q ss_pred ceeeeecchhhhccCCcee
Q 034189 83 NYLSGRIPTFIAKWVNLYA 101 (102)
Q Consensus 83 n~~~~~~~~~~~~l~~L~~ 101 (102)
|.+....+..+..+++|+.
T Consensus 145 N~l~~~~~~~~~~l~~L~~ 163 (229)
T 3e6j_A 145 NQLKSIPHGAFDRLSSLTH 163 (229)
T ss_dssp SCCCCCCTTTTTTCTTCCE
T ss_pred CcCCccCHHHHhCCCCCCE
Confidence 9999555566888888765
No 14
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.67 E-value=4.1e-16 Score=86.92 Aligned_cols=99 Identities=22% Similarity=0.252 Sum_probs=77.1
Q ss_pred eEEEEecCCcceecCChhhcCCCCCCEEEeecccceecCChhhcCCCCCcEEEcccceeceecChhhcCCCCCcEEEccc
Q 034189 3 SCRSNLGQNLLTGKIPPSLGRLSSLQTLSLLENGLNGTLPPELGKLSNLQKLRLQSNNLRGDLPKDYENLKNLTIFGIAG 82 (102)
Q Consensus 3 ~~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~p~~~~~~~~L~~l~l~~ 82 (102)
.++|++++|.+++..+..+..+++|+.+++++|.+++..+..+..+++|+.+++++|++++..+..+..+++|+++++++
T Consensus 30 l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 109 (177)
T 2o6r_A 30 ATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDT 109 (177)
T ss_dssp CSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcC
Confidence 46789999998855555678899999999999999844344568889999999999998855455678889999999999
Q ss_pred ceeeeecchhhhccCCcee
Q 034189 83 NYLSGRIPTFIAKWVNLYA 101 (102)
Q Consensus 83 n~~~~~~~~~~~~l~~L~~ 101 (102)
|.+++..+..+..+++|+.
T Consensus 110 N~l~~~~~~~~~~l~~L~~ 128 (177)
T 2o6r_A 110 NQLKSVPDGIFDRLTSLQK 128 (177)
T ss_dssp SCCSCCCTTTTTTCTTCCE
T ss_pred CcceEeCHHHhcCCcccCE
Confidence 9988554455677777764
No 15
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.67 E-value=2.8e-16 Score=87.29 Aligned_cols=83 Identities=29% Similarity=0.288 Sum_probs=41.5
Q ss_pred EEEEecCCcceecCChhhcCCCCCCEEEeecccceecCChhhcCCCCCcEEEcccceeceecChhhcCCCCCcEEEcccc
Q 034189 4 CRSNLGQNLLTGKIPPSLGRLSSLQTLSLLENGLNGTLPPELGKLSNLQKLRLQSNNLRGDLPKDYENLKNLTIFGIAGN 83 (102)
Q Consensus 4 ~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~p~~~~~~~~L~~l~l~~n 83 (102)
++|++++|.+++..|..|..+++|+.+++++|++++..+..+..+++|+++++++|+++...+..+..+++|+++++++|
T Consensus 33 ~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 112 (170)
T 3g39_A 33 QVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNN 112 (170)
T ss_dssp SEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCC
Confidence 34555555555444444555555555555555555222223445555555555555555332333455555555555555
Q ss_pred eee
Q 034189 84 YLS 86 (102)
Q Consensus 84 ~~~ 86 (102)
.+.
T Consensus 113 ~~~ 115 (170)
T 3g39_A 113 PWD 115 (170)
T ss_dssp CBC
T ss_pred CCC
Confidence 544
No 16
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.67 E-value=4.2e-16 Score=102.83 Aligned_cols=98 Identities=35% Similarity=0.497 Sum_probs=55.3
Q ss_pred EEEEecCCcceecCChhhcCCCCCCEEEeecccceecCChhhcCCCCCcEEEcccceeceecChhhcCCCCCcEEEcccc
Q 034189 4 CRSNLGQNLLTGKIPPSLGRLSSLQTLSLLENGLNGTLPPELGKLSNLQKLRLQSNNLRGDLPKDYENLKNLTIFGIAGN 83 (102)
Q Consensus 4 ~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~p~~~~~~~~L~~l~l~~n 83 (102)
++|++++|.+++.+|..+..+++|+.+++++|.+++..|..+..+++|+.+++++|++.+..|..+..+++|+++++++|
T Consensus 445 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N 524 (768)
T 3rgz_A 445 RDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNN 524 (768)
T ss_dssp CEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSS
T ss_pred CEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCC
Confidence 34555555555555555555555555555555555555555555555666666665555555555555566666666666
Q ss_pred eeeeecchhhhccCCcee
Q 034189 84 YLSGRIPTFIAKWVNLYA 101 (102)
Q Consensus 84 ~~~~~~~~~~~~l~~L~~ 101 (102)
.+++.+|..++.+++|+.
T Consensus 525 ~l~~~~p~~l~~l~~L~~ 542 (768)
T 3rgz_A 525 SFSGNIPAELGDCRSLIW 542 (768)
T ss_dssp CCEEECCGGGGGCTTCCE
T ss_pred cccCcCCHHHcCCCCCCE
Confidence 665555555555555543
No 17
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.66 E-value=4.5e-16 Score=90.94 Aligned_cols=16 Identities=31% Similarity=0.492 Sum_probs=6.2
Q ss_pred CCCCCcEEEcccceee
Q 034189 71 NLKNLTIFGIAGNYLS 86 (102)
Q Consensus 71 ~~~~L~~l~l~~n~~~ 86 (102)
.+++|+++++++|.++
T Consensus 153 ~l~~L~~L~L~~N~l~ 168 (251)
T 3m19_A 153 KLTNLQTLSLSTNQLQ 168 (251)
T ss_dssp TCTTCCEEECCSSCCS
T ss_pred cCcCCCEEECCCCcCC
Confidence 3333333333333333
No 18
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.66 E-value=5.6e-16 Score=90.54 Aligned_cols=98 Identities=26% Similarity=0.237 Sum_probs=47.7
Q ss_pred EEEEecCCcceecCChhhcCCCCCCEEEeecccceecCChhhcCCCCCcEEEcccceeceecChhhcCCCCCcEEEcccc
Q 034189 4 CRSNLGQNLLTGKIPPSLGRLSSLQTLSLLENGLNGTLPPELGKLSNLQKLRLQSNNLRGDLPKDYENLKNLTIFGIAGN 83 (102)
Q Consensus 4 ~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~p~~~~~~~~L~~l~l~~n 83 (102)
++|++++|.+++..+..+..+++|+.+++++|.+++..+..+..+++|+.+++++|++....+..+..+++|+.|++++|
T Consensus 62 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N 141 (251)
T 3m19_A 62 TWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTN 141 (251)
T ss_dssp CEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCC
Confidence 34455555555333334445555555555555555222233445555555555555555332333455555555556555
Q ss_pred eeeeecchhhhccCCcee
Q 034189 84 YLSGRIPTFIAKWVNLYA 101 (102)
Q Consensus 84 ~~~~~~~~~~~~l~~L~~ 101 (102)
.+++..+..+..+++|+.
T Consensus 142 ~l~~~~~~~~~~l~~L~~ 159 (251)
T 3m19_A 142 QLQSIPAGAFDKLTNLQT 159 (251)
T ss_dssp CCCCCCTTTTTTCTTCCE
T ss_pred cCCccCHHHcCcCcCCCE
Confidence 555333334555555543
No 19
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.66 E-value=3.3e-16 Score=94.75 Aligned_cols=98 Identities=19% Similarity=0.240 Sum_probs=77.4
Q ss_pred eEEEEecCCcceecCChhhcCCCCCCEEEeecccceecCChhhcCCCCCcEEEcccceeceecChhhcCCCCCcEEEccc
Q 034189 3 SCRSNLGQNLLTGKIPPSLGRLSSLQTLSLLENGLNGTLPPELGKLSNLQKLRLQSNNLRGDLPKDYENLKNLTIFGIAG 82 (102)
Q Consensus 3 ~~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~p~~~~~~~~L~~l~l~~ 82 (102)
.++|++++|.++ .+|..+..+++|+.+++++|.++ .+|..+..+++|+.+++++|.+.+..|..+..+++|+++++++
T Consensus 185 L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~-~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~ 262 (328)
T 4fcg_A 185 LQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKD 262 (328)
T ss_dssp CCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC-CCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTT
T ss_pred CCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC-cCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCC
Confidence 456778888887 77777888888888888888888 5666777888888888888877777777788888888888888
Q ss_pred ceeeeecchhhhccCCceeC
Q 034189 83 NYLSGRIPTFIAKWVNLYAL 102 (102)
Q Consensus 83 n~~~~~~~~~~~~l~~L~~l 102 (102)
|.+.+.+|..+.++++|+.|
T Consensus 263 n~~~~~~p~~~~~l~~L~~L 282 (328)
T 4fcg_A 263 CSNLLTLPLDIHRLTQLEKL 282 (328)
T ss_dssp CTTCCBCCTTGGGCTTCCEE
T ss_pred CCchhhcchhhhcCCCCCEE
Confidence 87777888778888777653
No 20
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.65 E-value=9e-16 Score=87.40 Aligned_cols=97 Identities=24% Similarity=0.214 Sum_probs=43.2
Q ss_pred EEEEecCCcceecCChhhcCCCCCCEEEeecccceecCChhhcCCCCCcEEEcccceeceecChhhcCCCCCcEEEcccc
Q 034189 4 CRSNLGQNLLTGKIPPSLGRLSSLQTLSLLENGLNGTLPPELGKLSNLQKLRLQSNNLRGDLPKDYENLKNLTIFGIAGN 83 (102)
Q Consensus 4 ~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~p~~~~~~~~L~~l~l~~n 83 (102)
++|++++|.+++..+..+..+++|+.+++++|.+++..+..+..+++|+++++++|++....+..+..+++|+++++++|
T Consensus 31 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N 110 (208)
T 2o6s_A 31 TYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTN 110 (208)
T ss_dssp SEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCC
Confidence 34555555555333333445555555555555555222222344455555555555544222223344445555555554
Q ss_pred eeeeecchhhhccCCce
Q 034189 84 YLSGRIPTFIAKWVNLY 100 (102)
Q Consensus 84 ~~~~~~~~~~~~l~~L~ 100 (102)
.+++..+..+..+++|+
T Consensus 111 ~l~~~~~~~~~~l~~L~ 127 (208)
T 2o6s_A 111 QLQSLPDGVFDKLTQLK 127 (208)
T ss_dssp CCCCCCTTTTTTCTTCC
T ss_pred cCcccCHhHhccCCcCC
Confidence 44433233334444443
No 21
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.65 E-value=9.4e-16 Score=87.33 Aligned_cols=99 Identities=23% Similarity=0.237 Sum_probs=79.3
Q ss_pred eEEEEecCCcceecCChhhcCCCCCCEEEeecccceecCChhhcCCCCCcEEEcccceeceecChhhcCCCCCcEEEccc
Q 034189 3 SCRSNLGQNLLTGKIPPSLGRLSSLQTLSLLENGLNGTLPPELGKLSNLQKLRLQSNNLRGDLPKDYENLKNLTIFGIAG 82 (102)
Q Consensus 3 ~~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~p~~~~~~~~L~~l~l~~ 82 (102)
.++|++++|.+++..+..+..+++|+.+++++|.+++..+..+..+++|+.+++++|++....+..+..+++|+++++++
T Consensus 54 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~ 133 (208)
T 2o6s_A 54 LTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQ 133 (208)
T ss_dssp CSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCC
Confidence 46899999999954455678899999999999999844344578899999999999999855555678899999999999
Q ss_pred ceeeeecchhhhccCCcee
Q 034189 83 NYLSGRIPTFIAKWVNLYA 101 (102)
Q Consensus 83 n~~~~~~~~~~~~l~~L~~ 101 (102)
|.+++..+..+..+++|+.
T Consensus 134 N~l~~~~~~~~~~l~~L~~ 152 (208)
T 2o6s_A 134 NQLKSVPDGVFDRLTSLQY 152 (208)
T ss_dssp SCCSCCCTTTTTTCTTCCE
T ss_pred CccceeCHHHhccCCCccE
Confidence 9998555555777777765
No 22
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.65 E-value=9.3e-16 Score=93.76 Aligned_cols=97 Identities=23% Similarity=0.161 Sum_probs=52.9
Q ss_pred EEEEecCCcceecCChhhc-CCCCCCEEEeecccceecCChhhcCCCCCcEEEcccceeceecChhhcCCCCCcEEEccc
Q 034189 4 CRSNLGQNLLTGKIPPSLG-RLSSLQTLSLLENGLNGTLPPELGKLSNLQKLRLQSNNLRGDLPKDYENLKNLTIFGIAG 82 (102)
Q Consensus 4 ~~L~l~~n~~~~~~~~~~~-~l~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~p~~~~~~~~L~~l~l~~ 82 (102)
+.|++++|.+++..+..+. .+++|+.|++++|.+++..+..+..+++|+.+++++|++....+..|..+++|+.|++++
T Consensus 42 ~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~ 121 (361)
T 2xot_A 42 ALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYN 121 (361)
T ss_dssp SEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCC
Confidence 3566666666644444444 556666666666666543334455556666666666655533334455555566666665
Q ss_pred ceeeeecchhhhccCCce
Q 034189 83 NYLSGRIPTFIAKWVNLY 100 (102)
Q Consensus 83 n~~~~~~~~~~~~l~~L~ 100 (102)
|.+....+..|..+++|+
T Consensus 122 N~i~~~~~~~~~~l~~L~ 139 (361)
T 2xot_A 122 NHIVVVDRNAFEDMAQLQ 139 (361)
T ss_dssp SCCCEECTTTTTTCTTCC
T ss_pred CcccEECHHHhCCcccCC
Confidence 555544444555555544
No 23
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.65 E-value=9.1e-16 Score=85.56 Aligned_cols=82 Identities=30% Similarity=0.373 Sum_probs=43.2
Q ss_pred EEEEecCCcceecCChhhcCCCCCCEEEeecccceecCCh-hhcCCCCCcEEEcccceeceecChhhcCCCCCcEEEccc
Q 034189 4 CRSNLGQNLLTGKIPPSLGRLSSLQTLSLLENGLNGTLPP-ELGKLSNLQKLRLQSNNLRGDLPKDYENLKNLTIFGIAG 82 (102)
Q Consensus 4 ~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~-~~~~~~~L~~l~l~~n~~~~~~p~~~~~~~~L~~l~l~~ 82 (102)
++|++++|.+++..|..+..+++|+.|++++|.++ .+|. .+..+++|+.+++++|++....+..+..+++|+++++++
T Consensus 36 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~ 114 (174)
T 2r9u_A 36 QRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLT-AIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYN 114 (174)
T ss_dssp SEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCS
T ss_pred cEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCC-ccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEeCC
Confidence 34555555555444445555555555555555555 2333 244555555555555555522222355555555555555
Q ss_pred ceee
Q 034189 83 NYLS 86 (102)
Q Consensus 83 n~~~ 86 (102)
|.+.
T Consensus 115 N~~~ 118 (174)
T 2r9u_A 115 NPWD 118 (174)
T ss_dssp SCBC
T ss_pred CCcc
Confidence 5554
No 24
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.64 E-value=1.2e-15 Score=90.13 Aligned_cols=97 Identities=23% Similarity=0.214 Sum_probs=44.9
Q ss_pred EEEEecCCcceecCChhhcCCCCCCEEEeecccceecCChhhcCCCCCcEEEcccceeceecChhhcCCCCCcEEEcccc
Q 034189 4 CRSNLGQNLLTGKIPPSLGRLSSLQTLSLLENGLNGTLPPELGKLSNLQKLRLQSNNLRGDLPKDYENLKNLTIFGIAGN 83 (102)
Q Consensus 4 ~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~p~~~~~~~~L~~l~l~~n 83 (102)
++|++++|.+++..+..+..+++|+.+++++|.+++..+..+..+++|+.+++++|++++..+..+..+++|+++++++|
T Consensus 112 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N 191 (272)
T 3rfs_A 112 KELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQN 191 (272)
T ss_dssp CEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCC
Confidence 34445555544333333444555555555555544222222344555555555555554333333444555555555555
Q ss_pred eeeeecchhhhccCCce
Q 034189 84 YLSGRIPTFIAKWVNLY 100 (102)
Q Consensus 84 ~~~~~~~~~~~~l~~L~ 100 (102)
.+.+..+..+..+++|+
T Consensus 192 ~l~~~~~~~~~~l~~L~ 208 (272)
T 3rfs_A 192 QLKSVPDGVFDRLTSLQ 208 (272)
T ss_dssp CCSCCCTTTTTTCTTCC
T ss_pred cCCccCHHHHhCCcCCC
Confidence 55544334444444444
No 25
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.64 E-value=1.2e-15 Score=95.28 Aligned_cols=96 Identities=22% Similarity=0.207 Sum_probs=44.9
Q ss_pred EEEecCCcceecCChhhcCCCCCCEEEeecccceecCChhhcCCCCCcEEEcccceeceecChhhcCCCCCcEEEcccce
Q 034189 5 RSNLGQNLLTGKIPPSLGRLSSLQTLSLLENGLNGTLPPELGKLSNLQKLRLQSNNLRGDLPKDYENLKNLTIFGIAGNY 84 (102)
Q Consensus 5 ~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~p~~~~~~~~L~~l~l~~n~ 84 (102)
+|++++|.+++..+..+..+++|+.+++++|.+++..+..+..+++|+.+++++|++.+..|..+..+++|+++++++|.
T Consensus 303 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~ 382 (455)
T 3v47_A 303 QLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQ 382 (455)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred EEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCc
Confidence 44444444444334444444455555555554443333344445555555555555544434444455555555555555
Q ss_pred eeeecchhhhccCCce
Q 034189 85 LSGRIPTFIAKWVNLY 100 (102)
Q Consensus 85 ~~~~~~~~~~~l~~L~ 100 (102)
+++..+..+..+++|+
T Consensus 383 l~~~~~~~~~~l~~L~ 398 (455)
T 3v47_A 383 LKSVPDGIFDRLTSLQ 398 (455)
T ss_dssp CSCCCTTTTTTCTTCC
T ss_pred cccCCHhHhccCCccc
Confidence 5433223334444443
No 26
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.64 E-value=1.2e-15 Score=95.15 Aligned_cols=100 Identities=21% Similarity=0.235 Sum_probs=90.4
Q ss_pred eEEEEecCCcceecCChhhcCCCCCCEEEeecccceecCChhhcCCCCCcEEEcccceeceecChhhcCCCCCcEEEccc
Q 034189 3 SCRSNLGQNLLTGKIPPSLGRLSSLQTLSLLENGLNGTLPPELGKLSNLQKLRLQSNNLRGDLPKDYENLKNLTIFGIAG 82 (102)
Q Consensus 3 ~~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~p~~~~~~~~L~~l~l~~ 82 (102)
.++|++++|.+.+..|..+..+++|+.+++++|.+++..+..+..+++|+.+++++|++....|..+..+++|+++++++
T Consensus 277 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 356 (455)
T 3v47_A 277 VKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSY 356 (455)
T ss_dssp CCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCS
T ss_pred ceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCC
Confidence 46799999999988888899999999999999999977777899999999999999999877678889999999999999
Q ss_pred ceeeeecchhhhccCCceeC
Q 034189 83 NYLSGRIPTFIAKWVNLYAL 102 (102)
Q Consensus 83 n~~~~~~~~~~~~l~~L~~l 102 (102)
|.+++..|..+..+++|+.|
T Consensus 357 N~l~~~~~~~~~~l~~L~~L 376 (455)
T 3v47_A 357 NHIRALGDQSFLGLPNLKEL 376 (455)
T ss_dssp SCCCEECTTTTTTCTTCCEE
T ss_pred CcccccChhhccccccccEE
Confidence 99998878889999888764
No 27
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.64 E-value=1.3e-15 Score=90.02 Aligned_cols=99 Identities=26% Similarity=0.245 Sum_probs=69.5
Q ss_pred eEEEEecCCcceecCChhhcCCCCCCEEEeecccceecCChhhcCCCCCcEEEcccceeceecChhhcCCCCCcEEEccc
Q 034189 3 SCRSNLGQNLLTGKIPPSLGRLSSLQTLSLLENGLNGTLPPELGKLSNLQKLRLQSNNLRGDLPKDYENLKNLTIFGIAG 82 (102)
Q Consensus 3 ~~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~p~~~~~~~~L~~l~l~~ 82 (102)
.++|++++|.+++..+..+..+++|+.+++++|.+++..+..+..+++|+.+++++|++++..+..+..+++|+.+++++
T Consensus 87 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~ 166 (272)
T 3rfs_A 87 LTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSY 166 (272)
T ss_dssp CCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCC
Confidence 45677777777755555567778888888888877744444467777888888888877744445567778888888888
Q ss_pred ceeeeecchhhhccCCcee
Q 034189 83 NYLSGRIPTFIAKWVNLYA 101 (102)
Q Consensus 83 n~~~~~~~~~~~~l~~L~~ 101 (102)
|.+++..+..+..+++|+.
T Consensus 167 n~l~~~~~~~~~~l~~L~~ 185 (272)
T 3rfs_A 167 NQLQSLPEGVFDKLTQLKD 185 (272)
T ss_dssp SCCCCCCTTTTTTCTTCCE
T ss_pred CCcCccCHHHhcCCccCCE
Confidence 8877555555667776664
No 28
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.64 E-value=5.4e-16 Score=84.24 Aligned_cols=81 Identities=30% Similarity=0.381 Sum_probs=40.6
Q ss_pred EEEEecCCcce-ecCChhhcCCCCCCEEEeecccceecCChhhcCCCCCcEEEcccceeceecChhhcCCCCCcEEEccc
Q 034189 4 CRSNLGQNLLT-GKIPPSLGRLSSLQTLSLLENGLNGTLPPELGKLSNLQKLRLQSNNLRGDLPKDYENLKNLTIFGIAG 82 (102)
Q Consensus 4 ~~L~l~~n~~~-~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~p~~~~~~~~L~~l~l~~ 82 (102)
++|++++|.++ +.+|..+..+++|+.+++++|.+++. ..+..+++|+++++++|++.+..|..+..+++|+++++++
T Consensus 20 ~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~ 97 (149)
T 2je0_A 20 KELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSG 97 (149)
T ss_dssp SEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTT
T ss_pred eEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCC
Confidence 34555555555 44444445555555555555555522 3344455555555555555533444444445555555555
Q ss_pred ceee
Q 034189 83 NYLS 86 (102)
Q Consensus 83 n~~~ 86 (102)
|.++
T Consensus 98 N~i~ 101 (149)
T 2je0_A 98 NKIK 101 (149)
T ss_dssp SCCC
T ss_pred CcCC
Confidence 5544
No 29
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.63 E-value=8.4e-16 Score=84.95 Aligned_cols=95 Identities=23% Similarity=0.216 Sum_probs=47.5
Q ss_pred EEEEecCCcceecCChhhcCCCCCCEEEeecccceecCChhhcCCCCCcEEEcccceeceecC--hhhcCCCCCcEEEcc
Q 034189 4 CRSNLGQNLLTGKIPPSLGRLSSLQTLSLLENGLNGTLPPELGKLSNLQKLRLQSNNLRGDLP--KDYENLKNLTIFGIA 81 (102)
Q Consensus 4 ~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~p--~~~~~~~~L~~l~l~ 81 (102)
++|++++|.+++. ..+..+++|+.+++++|.+++..|..+..+++|+.+++++|++.+ .| ..+..+++|++++++
T Consensus 52 ~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~l~~l~~L~~L~l~ 128 (168)
T 2ell_A 52 EFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKD-ISTLEPLKKLECLKSLDLF 128 (168)
T ss_dssp CEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCS-SGGGGGGSSCSCCCEEECC
T ss_pred CEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCc-chhHHHHhcCCCCCEEEee
Confidence 3455555555522 344455555555555555553344444445555555555555552 22 345555555556665
Q ss_pred cceeeeecc---hhhhccCCcee
Q 034189 82 GNYLSGRIP---TFIAKWVNLYA 101 (102)
Q Consensus 82 ~n~~~~~~~---~~~~~l~~L~~ 101 (102)
+|.+++..+ ..+..+++|+.
T Consensus 129 ~N~l~~~~~~~~~~~~~l~~L~~ 151 (168)
T 2ell_A 129 NCEVTNLNDYRESVFKLLPQLTY 151 (168)
T ss_dssp SSGGGTSTTHHHHHHTTCSSCCE
T ss_pred CCcCcchHHHHHHHHHhCccCcE
Confidence 555553222 24455555543
No 30
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.63 E-value=3.1e-15 Score=88.71 Aligned_cols=96 Identities=22% Similarity=0.220 Sum_probs=41.4
Q ss_pred EEEecCCcceecCChhhcCCCCCCEEEeecccceecCChhhcCCCCCcEEEcccceeceecChhhcCCCCCcEEEcccce
Q 034189 5 RSNLGQNLLTGKIPPSLGRLSSLQTLSLLENGLNGTLPPELGKLSNLQKLRLQSNNLRGDLPKDYENLKNLTIFGIAGNY 84 (102)
Q Consensus 5 ~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~p~~~~~~~~L~~l~l~~n~ 84 (102)
+|++++|.+++..+..+..+++|+.+++++|.+++..+..+..+++|+.+++++|++....+..+..+++|+.+++++|.
T Consensus 109 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 188 (285)
T 1ozn_A 109 TLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNR 188 (285)
T ss_dssp EEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred EEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCc
Confidence 44444444443333344444444444444444442222224444444444444444442222234444444444444444
Q ss_pred eeeecchhhhccCCce
Q 034189 85 LSGRIPTFIAKWVNLY 100 (102)
Q Consensus 85 ~~~~~~~~~~~l~~L~ 100 (102)
+.+..|..+..+++|+
T Consensus 189 l~~~~~~~~~~l~~L~ 204 (285)
T 1ozn_A 189 VAHVHPHAFRDLGRLM 204 (285)
T ss_dssp CCEECTTTTTTCTTCC
T ss_pred ccccCHhHccCccccc
Confidence 4433344444444433
No 31
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.62 E-value=5.1e-16 Score=84.32 Aligned_cols=98 Identities=21% Similarity=0.173 Sum_probs=82.7
Q ss_pred eEEEEecCCcceecCChhhcCCCCCCEEEeecccceecCChhhcCCCCCcEEEcccceecee-cChhhcCCCCCcEEEcc
Q 034189 3 SCRSNLGQNLLTGKIPPSLGRLSSLQTLSLLENGLNGTLPPELGKLSNLQKLRLQSNNLRGD-LPKDYENLKNLTIFGIA 81 (102)
Q Consensus 3 ~~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~~-~p~~~~~~~~L~~l~l~ 81 (102)
.++|++++|.+++. ..+..+++|+.+++++|.+++..|..+..+++|+.+++++|++.+. .+..+..+++|++++++
T Consensus 44 L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~ 121 (149)
T 2je0_A 44 LEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLF 121 (149)
T ss_dssp CCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECT
T ss_pred CcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCc
Confidence 46899999999954 7788999999999999999965777777899999999999999842 23678899999999999
Q ss_pred cceeeeecc---hhhhccCCceeC
Q 034189 82 GNYLSGRIP---TFIAKWVNLYAL 102 (102)
Q Consensus 82 ~n~~~~~~~---~~~~~l~~L~~l 102 (102)
+|.+++..+ ..+..+++|+.|
T Consensus 122 ~N~l~~~~~~~~~~~~~l~~L~~L 145 (149)
T 2je0_A 122 NCEVTNLNDYRENVFKLLPQLTYL 145 (149)
T ss_dssp TCGGGGSTTHHHHHHHHCTTCCEE
T ss_pred CCcccchHHHHHHHHHHCCCcccc
Confidence 999985544 468888888764
No 32
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.62 E-value=2.5e-15 Score=84.83 Aligned_cols=88 Identities=27% Similarity=0.338 Sum_probs=79.6
Q ss_pred eEEEEecCCcceecCChhhcCCCCCCEEEeecccceecCChhhcCCCCCcEEEcccceeceecChhhcCCCCCcEEEccc
Q 034189 3 SCRSNLGQNLLTGKIPPSLGRLSSLQTLSLLENGLNGTLPPELGKLSNLQKLRLQSNNLRGDLPKDYENLKNLTIFGIAG 82 (102)
Q Consensus 3 ~~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~p~~~~~~~~L~~l~l~~ 82 (102)
.++|++++|.+++..|..+..+++|+.+++++|.+++..+..+..+++|+.+++++|++++..|..+..+++|+++++++
T Consensus 56 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 135 (192)
T 1w8a_A 56 LVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLAS 135 (192)
T ss_dssp CCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTT
T ss_pred CCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCC
Confidence 47899999999987788999999999999999999977676788999999999999999988888899999999999999
Q ss_pred ceeeeecc
Q 034189 83 NYLSGRIP 90 (102)
Q Consensus 83 n~~~~~~~ 90 (102)
|.+....+
T Consensus 136 N~l~c~c~ 143 (192)
T 1w8a_A 136 NPFNCNCH 143 (192)
T ss_dssp CCBCCSGG
T ss_pred CCccCcCc
Confidence 99886543
No 33
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.62 E-value=1.5e-15 Score=83.99 Aligned_cols=98 Identities=32% Similarity=0.324 Sum_probs=82.6
Q ss_pred eEEEEecCCcce-ecCChhhcCCCCCCEEEeecccceecCChhhcCCCCCcEEEcccceeceecChhhcCCCCCcEEEcc
Q 034189 3 SCRSNLGQNLLT-GKIPPSLGRLSSLQTLSLLENGLNGTLPPELGKLSNLQKLRLQSNNLRGDLPKDYENLKNLTIFGIA 81 (102)
Q Consensus 3 ~~~L~l~~n~~~-~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~p~~~~~~~~L~~l~l~ 81 (102)
.++|++++|.++ +.+|..+..+++|+.+++++|.+++. ..+..+++|+.+++++|++.+..|..+..+++|++++++
T Consensus 26 L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 103 (168)
T 2ell_A 26 VRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLS 103 (168)
T ss_dssp CSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECB
T ss_pred CCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEecc
Confidence 468999999998 67888888999999999999999844 668889999999999999996678878889999999999
Q ss_pred cceeeeec-chhhhccCCceeC
Q 034189 82 GNYLSGRI-PTFIAKWVNLYAL 102 (102)
Q Consensus 82 ~n~~~~~~-~~~~~~l~~L~~l 102 (102)
+|.+++.. +..+..+++|+.|
T Consensus 104 ~N~l~~~~~~~~l~~l~~L~~L 125 (168)
T 2ell_A 104 GNKLKDISTLEPLKKLECLKSL 125 (168)
T ss_dssp SSSCCSSGGGGGGSSCSCCCEE
T ss_pred CCccCcchhHHHHhcCCCCCEE
Confidence 99998432 2678888887753
No 34
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.62 E-value=1.8e-15 Score=97.26 Aligned_cols=99 Identities=16% Similarity=0.018 Sum_probs=78.6
Q ss_pred eEEEEecCCcceecCChhhcCCCCCCEEEeecccceecCChhhcCCCCCcEEEcccceeceecChhhcCCCCCcEEEccc
Q 034189 3 SCRSNLGQNLLTGKIPPSLGRLSSLQTLSLLENGLNGTLPPELGKLSNLQKLRLQSNNLRGDLPKDYENLKNLTIFGIAG 82 (102)
Q Consensus 3 ~~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~p~~~~~~~~L~~l~l~~ 82 (102)
+++|++++|.+++..|..|..+++|+.+++++|.+++..|..+..+++|+.+++++|++....|..+..+++|+++++++
T Consensus 35 l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 114 (606)
T 3t6q_A 35 TECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQ 114 (606)
T ss_dssp CCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTT
T ss_pred CcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccc
Confidence 36788888888876677788888888888888888866677788888888888888888866677788888888888888
Q ss_pred ceeeeecchhhhccCCcee
Q 034189 83 NYLSGRIPTFIAKWVNLYA 101 (102)
Q Consensus 83 n~~~~~~~~~~~~l~~L~~ 101 (102)
|.+++..+..+.++++|+.
T Consensus 115 n~i~~l~~~~~~~l~~L~~ 133 (606)
T 3t6q_A 115 TGISSIDFIPLHNQKTLES 133 (606)
T ss_dssp SCCSCGGGSCCTTCTTCCE
T ss_pred cCcccCCcchhccCCcccE
Confidence 8887544566777777664
No 35
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.62 E-value=3.2e-15 Score=83.04 Aligned_cols=96 Identities=20% Similarity=0.273 Sum_probs=81.7
Q ss_pred EEEEecCCcceecCChhhcCCCCCCEEEeecccceecCChhhcCCCCCcEEEcccceeceecChhhcCCCCCcEEEcccc
Q 034189 4 CRSNLGQNLLTGKIPPSLGRLSSLQTLSLLENGLNGTLPPELGKLSNLQKLRLQSNNLRGDLPKDYENLKNLTIFGIAGN 83 (102)
Q Consensus 4 ~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~p~~~~~~~~L~~l~l~~n 83 (102)
+++++++|.++ .+|..+ ..+++.+++++|.+++..+..+..+++|+.+++++|+++...+..|..+++|+++++++|
T Consensus 12 ~~l~~s~n~l~-~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 12 TTVDCSGKSLA-SVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TEEECTTSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcC-ccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 46899999999 678765 388999999999999666777999999999999999999555566789999999999999
Q ss_pred eeeeecchhhhccCCceeC
Q 034189 84 YLSGRIPTFIAKWVNLYAL 102 (102)
Q Consensus 84 ~~~~~~~~~~~~l~~L~~l 102 (102)
.+++..+..+..+++|+.|
T Consensus 89 ~l~~~~~~~~~~l~~L~~L 107 (170)
T 3g39_A 89 QLKSIPRGAFDNLKSLTHI 107 (170)
T ss_dssp CCCCCCTTTTTTCTTCCEE
T ss_pred ccCEeCHHHhcCCCCCCEE
Confidence 9996655678888888753
No 36
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.61 E-value=3.9e-15 Score=88.26 Aligned_cols=99 Identities=21% Similarity=0.186 Sum_probs=83.9
Q ss_pred eEEEEecCCcceecCChhhcCCCCCCEEEeecccceecCChhhcCCCCCcEEEcccceeceecChhhcCCCCCcEEEccc
Q 034189 3 SCRSNLGQNLLTGKIPPSLGRLSSLQTLSLLENGLNGTLPPELGKLSNLQKLRLQSNNLRGDLPKDYENLKNLTIFGIAG 82 (102)
Q Consensus 3 ~~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~p~~~~~~~~L~~l~l~~ 82 (102)
.++|++++|.+++..+..+..+++|+.+++++|.+++..+..+..+++|+.+++++|++.+..|..+..+++|+.+++++
T Consensus 131 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 210 (285)
T 1ozn_A 131 LQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFA 210 (285)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCC
Confidence 46899999999955556688999999999999999955445688899999999999999977788899999999999999
Q ss_pred ceeeeecchhhhccCCcee
Q 034189 83 NYLSGRIPTFIAKWVNLYA 101 (102)
Q Consensus 83 n~~~~~~~~~~~~l~~L~~ 101 (102)
|.+++..+..+..+++|+.
T Consensus 211 n~l~~~~~~~~~~l~~L~~ 229 (285)
T 1ozn_A 211 NNLSALPTEALAPLRALQY 229 (285)
T ss_dssp SCCSCCCHHHHTTCTTCCE
T ss_pred CcCCcCCHHHcccCcccCE
Confidence 9999665567888888775
No 37
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.61 E-value=2.3e-15 Score=96.73 Aligned_cols=98 Identities=18% Similarity=0.235 Sum_probs=48.5
Q ss_pred EEEEecCCcceecCChhhcCCCCCCEEEeecccceecCChhhcCCCCCcEEEcccceeceecChhhcCCCCCcEEEcccc
Q 034189 4 CRSNLGQNLLTGKIPPSLGRLSSLQTLSLLENGLNGTLPPELGKLSNLQKLRLQSNNLRGDLPKDYENLKNLTIFGIAGN 83 (102)
Q Consensus 4 ~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~p~~~~~~~~L~~l~l~~n 83 (102)
++|++++|.+++..|..|..+++|+.+++++|.+++..|..+..+++|+++++++|++....+..+..+++|+++++++|
T Consensus 59 ~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 138 (606)
T 3vq2_A 59 QWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHN 138 (606)
T ss_dssp CEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSS
T ss_pred cEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCC
Confidence 34455555555434444455555555555555555333444555555555555555554332234455555555555555
Q ss_pred eeee-ecchhhhccCCcee
Q 034189 84 YLSG-RIPTFIAKWVNLYA 101 (102)
Q Consensus 84 ~~~~-~~~~~~~~l~~L~~ 101 (102)
.+.+ .+|..++++++|+.
T Consensus 139 ~l~~~~lp~~~~~l~~L~~ 157 (606)
T 3vq2_A 139 FIHSCKLPAYFSNLTNLVH 157 (606)
T ss_dssp CCCCCCCCGGGGTCTTCCE
T ss_pred cccceechHhHhhcCCCCE
Confidence 5543 34555555555543
No 38
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.61 E-value=3.5e-15 Score=93.40 Aligned_cols=99 Identities=19% Similarity=0.128 Sum_probs=78.7
Q ss_pred eEEEEecCCcceecCChhhcCCCCCCEEEeecccceecCChhhcCCCCCcEEEcccceeceecChhhcCCCCCcEEEccc
Q 034189 3 SCRSNLGQNLLTGKIPPSLGRLSSLQTLSLLENGLNGTLPPELGKLSNLQKLRLQSNNLRGDLPKDYENLKNLTIFGIAG 82 (102)
Q Consensus 3 ~~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~p~~~~~~~~L~~l~l~~ 82 (102)
+++|++++|.+++..+..|..+++|+.+++++|.+++..+..+..+++|+.+++++|++....+..+..+++|++|++++
T Consensus 77 l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 156 (452)
T 3zyi_A 77 TRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRN 156 (452)
T ss_dssp CSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCS
T ss_pred ccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCC
Confidence 46788999999877778888899999999999998866667788888999999999988854455678888899999998
Q ss_pred ceeeeecchhhhccCCcee
Q 034189 83 NYLSGRIPTFIAKWVNLYA 101 (102)
Q Consensus 83 n~~~~~~~~~~~~l~~L~~ 101 (102)
|.+....+..+.++++|+.
T Consensus 157 N~l~~~~~~~~~~l~~L~~ 175 (452)
T 3zyi_A 157 NPIESIPSYAFNRVPSLMR 175 (452)
T ss_dssp CCCCEECTTTTTTCTTCCE
T ss_pred CCcceeCHhHHhcCCcccE
Confidence 8888554456666666654
No 39
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.61 E-value=2.8e-15 Score=96.30 Aligned_cols=99 Identities=24% Similarity=0.228 Sum_probs=80.0
Q ss_pred eEEEEecCCcceecCChhhcCCCCCCEEEeecccceecCChhhcCCCCCcEEEcccceeceecChhhcCCCCCcEEEccc
Q 034189 3 SCRSNLGQNLLTGKIPPSLGRLSSLQTLSLLENGLNGTLPPELGKLSNLQKLRLQSNNLRGDLPKDYENLKNLTIFGIAG 82 (102)
Q Consensus 3 ~~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~p~~~~~~~~L~~l~l~~ 82 (102)
.++|++++|.+++..+..|.++++|+.|++++|++++..+..+..+++|+++++++|+++...+..+.++++|++|++++
T Consensus 78 L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~ 157 (635)
T 4g8a_A 78 LQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAH 157 (635)
T ss_dssp CCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCS
T ss_pred CCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeecccc
Confidence 57899999999966667789999999999999999854445688899999999999998854445688889999999999
Q ss_pred ceeee-ecchhhhccCCcee
Q 034189 83 NYLSG-RIPTFIAKWVNLYA 101 (102)
Q Consensus 83 n~~~~-~~~~~~~~l~~L~~ 101 (102)
|.+.. ..|..+..+++|+.
T Consensus 158 N~l~~~~~~~~~~~l~~L~~ 177 (635)
T 4g8a_A 158 NLIQSFKLPEYFSNLTNLEH 177 (635)
T ss_dssp SCCCCCCCCGGGGGCTTCCE
T ss_pred CccccCCCchhhccchhhhh
Confidence 98864 34677777777765
No 40
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.61 E-value=2e-15 Score=97.06 Aligned_cols=100 Identities=21% Similarity=0.161 Sum_probs=87.6
Q ss_pred eEEEEecCCcceecCChhhcCCCCCCEEEeecccceecCChhhcCCCCCcEEEcccceeceecChhhcCCCCCcEEEccc
Q 034189 3 SCRSNLGQNLLTGKIPPSLGRLSSLQTLSLLENGLNGTLPPELGKLSNLQKLRLQSNNLRGDLPKDYENLKNLTIFGIAG 82 (102)
Q Consensus 3 ~~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~p~~~~~~~~L~~l~l~~ 82 (102)
.++|++++|.+++..+..|..+++|+.+++++|.+++..|..+..+++|+++++++|++....|..+..+++|+++++++
T Consensus 34 l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~ 113 (606)
T 3vq2_A 34 TKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVE 113 (606)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTT
T ss_pred cCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccC
Confidence 46899999999977777899999999999999999976677889999999999999999966688899999999999999
Q ss_pred ceeeeecchhhhccCCceeC
Q 034189 83 NYLSGRIPTFIAKWVNLYAL 102 (102)
Q Consensus 83 n~~~~~~~~~~~~l~~L~~l 102 (102)
|.+.+..+..++++++|+.|
T Consensus 114 n~l~~~~~~~~~~l~~L~~L 133 (606)
T 3vq2_A 114 TKLASLESFPIGQLITLKKL 133 (606)
T ss_dssp SCCCCSSSSCCTTCTTCCEE
T ss_pred CccccccccccCCCCCCCEE
Confidence 99986655778888888754
No 41
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.61 E-value=2.1e-15 Score=96.92 Aligned_cols=93 Identities=26% Similarity=0.274 Sum_probs=51.2
Q ss_pred EEEEecCCcceecCChhhcCCCCCCEEEeecccceecCChhhcCCCCCcEEEcccceeceecChhhcCCCCCcEEEcccc
Q 034189 4 CRSNLGQNLLTGKIPPSLGRLSSLQTLSLLENGLNGTLPPELGKLSNLQKLRLQSNNLRGDLPKDYENLKNLTIFGIAGN 83 (102)
Q Consensus 4 ~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~p~~~~~~~~L~~l~l~~n 83 (102)
+.|++++|.++ .+|. +..+++|+.|++++|.++ .+|..+..+++|+.+++++|+++ .+| .+..+++|+.|++++|
T Consensus 444 ~~L~Ls~n~l~-~lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp-~l~~l~~L~~L~Ls~N 518 (567)
T 1dce_A 444 RVLHLAHKDLT-VLCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVD-GVANLPRLQELLLCNN 518 (567)
T ss_dssp SEEECTTSCCS-SCCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCG-GGTTCSSCCEEECCSS
T ss_pred eEEEecCCCCC-CCcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCC-CCc-ccCCCCCCcEEECCCC
Confidence 34556666555 3444 555555666666666555 55555555555555555555555 244 4555555555555555
Q ss_pred eeeeec-chhhhccCCcee
Q 034189 84 YLSGRI-PTFIAKWVNLYA 101 (102)
Q Consensus 84 ~~~~~~-~~~~~~l~~L~~ 101 (102)
.+++.. |..++.+++|+.
T Consensus 519 ~l~~~~~p~~l~~l~~L~~ 537 (567)
T 1dce_A 519 RLQQSAAIQPLVSCPRLVL 537 (567)
T ss_dssp CCCSSSTTGGGGGCTTCCE
T ss_pred CCCCCCCcHHHhcCCCCCE
Confidence 555433 555555555543
No 42
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.61 E-value=3.6e-15 Score=88.93 Aligned_cols=96 Identities=25% Similarity=0.227 Sum_probs=48.2
Q ss_pred EEEEecCCcceecCChhhcCCCCCCEEEeecccceecCChhhcCCCCCcEEEcccceeceecChhhcCCCCCcEEEcccc
Q 034189 4 CRSNLGQNLLTGKIPPSLGRLSSLQTLSLLENGLNGTLPPELGKLSNLQKLRLQSNNLRGDLPKDYENLKNLTIFGIAGN 83 (102)
Q Consensus 4 ~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~p~~~~~~~~L~~l~l~~n 83 (102)
++|++++|.++ .+|..+..+++|+.+++++|++++..+..+..+++|+.+++++|++....+..+..+++|+.|++++|
T Consensus 80 ~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 158 (290)
T 1p9a_G 80 GTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN 158 (290)
T ss_dssp CEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred CEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCC
Confidence 34555555555 44555555555555555555555332334555555555555555555333333445555555555555
Q ss_pred eeeeecchhhhccCCce
Q 034189 84 YLSGRIPTFIAKWVNLY 100 (102)
Q Consensus 84 ~~~~~~~~~~~~l~~L~ 100 (102)
.++...+..+..+++|+
T Consensus 159 ~l~~l~~~~~~~l~~L~ 175 (290)
T 1p9a_G 159 NLTELPAGLLNGLENLD 175 (290)
T ss_dssp CCSCCCTTTTTTCTTCC
T ss_pred cCCccCHHHhcCcCCCC
Confidence 55532223334444443
No 43
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.61 E-value=3.2e-15 Score=93.90 Aligned_cols=98 Identities=26% Similarity=0.266 Sum_probs=57.3
Q ss_pred EEEEecCCcceecCChhhcCCCCCCEEEeecccceecCChhhcCCCCCcEEEcccceeceecChhhcCCCCCcEEEcccc
Q 034189 4 CRSNLGQNLLTGKIPPSLGRLSSLQTLSLLENGLNGTLPPELGKLSNLQKLRLQSNNLRGDLPKDYENLKNLTIFGIAGN 83 (102)
Q Consensus 4 ~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~p~~~~~~~~L~~l~l~~n 83 (102)
+.|++++|.+++..+..|..+++|+.+++++|.+++..|..+..+++|+++++++|++....+..+..+++|++|++++|
T Consensus 35 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n 114 (477)
T 2id5_A 35 RLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISEN 114 (477)
T ss_dssp SEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTS
T ss_pred cEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCC
Confidence 45666666666555555666666666666666666544555666666666666666665322234555666666666666
Q ss_pred eeeeecchhhhccCCcee
Q 034189 84 YLSGRIPTFIAKWVNLYA 101 (102)
Q Consensus 84 ~~~~~~~~~~~~l~~L~~ 101 (102)
.+.+..+..+..+++|+.
T Consensus 115 ~i~~~~~~~~~~l~~L~~ 132 (477)
T 2id5_A 115 KIVILLDYMFQDLYNLKS 132 (477)
T ss_dssp CCCEECTTTTTTCTTCCE
T ss_pred ccccCChhHccccccCCE
Confidence 665554555555555543
No 44
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.61 E-value=4.8e-15 Score=90.63 Aligned_cols=99 Identities=20% Similarity=0.125 Sum_probs=76.0
Q ss_pred eEEEEecCCcceecCChhhcCCCCCCEEEeecccceecCChhhcCCCCCcEEEcccceeceecChhhcCCCCCcEEEccc
Q 034189 3 SCRSNLGQNLLTGKIPPSLGRLSSLQTLSLLENGLNGTLPPELGKLSNLQKLRLQSNNLRGDLPKDYENLKNLTIFGIAG 82 (102)
Q Consensus 3 ~~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~p~~~~~~~~L~~l~l~~ 82 (102)
+++|++++|.+++..+..|..+++|+.|++++|.++...+..+..+++|+.+++++|++....|..+..+++|+.|++++
T Consensus 66 L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~ 145 (361)
T 2xot_A 66 LHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQ 145 (361)
T ss_dssp CCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred cCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCC
Confidence 46789999999866667788899999999999998855555678888999999999988866677888888899999998
Q ss_pred ceeeeecchhh---hccCCcee
Q 034189 83 NYLSGRIPTFI---AKWVNLYA 101 (102)
Q Consensus 83 n~~~~~~~~~~---~~l~~L~~ 101 (102)
|.++...+..+ ..+++|+.
T Consensus 146 N~l~~l~~~~~~~~~~l~~L~~ 167 (361)
T 2xot_A 146 NQISRFPVELIKDGNKLPKLML 167 (361)
T ss_dssp SCCCSCCGGGTC----CTTCCE
T ss_pred CcCCeeCHHHhcCcccCCcCCE
Confidence 88884333333 44666554
No 45
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.60 E-value=3.4e-15 Score=84.50 Aligned_cols=93 Identities=18% Similarity=0.244 Sum_probs=44.2
Q ss_pred EEEEecCCcceecCChhhcCCCCCCEEEeecccceecCChhhcCCCCCcEEEcccce-eceecChhhcCCCCCcEEEccc
Q 034189 4 CRSNLGQNLLTGKIPPSLGRLSSLQTLSLLENGLNGTLPPELGKLSNLQKLRLQSNN-LRGDLPKDYENLKNLTIFGIAG 82 (102)
Q Consensus 4 ~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~-~~~~~p~~~~~~~~L~~l~l~~ 82 (102)
++|++++|.+++..+..+..+++|+.+++++|.+++..+..+..+++|+.+++++|+ +. ..| .+..+++|+.+++++
T Consensus 91 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~ 168 (197)
T 4ezg_A 91 ERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQF 168 (197)
T ss_dssp CEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTT
T ss_pred CEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCC
Confidence 344555555543344444455555555555555553334444455555555555554 33 232 344455555555555
Q ss_pred ceeeeecchhhhccCCce
Q 034189 83 NYLSGRIPTFIAKWVNLY 100 (102)
Q Consensus 83 n~~~~~~~~~~~~l~~L~ 100 (102)
|.+++ ++ .+..+++|+
T Consensus 169 n~i~~-~~-~l~~l~~L~ 184 (197)
T 4ezg_A 169 DGVHD-YR-GIEDFPKLN 184 (197)
T ss_dssp BCCCC-CT-TGGGCSSCC
T ss_pred CCCcC-hH-HhccCCCCC
Confidence 55542 22 344444444
No 46
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.60 E-value=2.6e-15 Score=95.54 Aligned_cols=99 Identities=21% Similarity=0.198 Sum_probs=70.7
Q ss_pred eEEEEecCCcceecCChhhcCCCCCCEEEeecccceecCChhhcCCCCCcEEEcccceeceecChhhcCCCCCcEEEccc
Q 034189 3 SCRSNLGQNLLTGKIPPSLGRLSSLQTLSLLENGLNGTLPPELGKLSNLQKLRLQSNNLRGDLPKDYENLKNLTIFGIAG 82 (102)
Q Consensus 3 ~~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~p~~~~~~~~L~~l~l~~ 82 (102)
.++|++++|.+++..|..+..+++|+.+++++|.+++..|..+..+++|+++++++|++.+..|..+..+++|+++++++
T Consensus 28 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 107 (549)
T 2z81_A 28 MKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMG 107 (549)
T ss_dssp CCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTT
T ss_pred ccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCC
Confidence 45778888888766667777788888888888887765556677777888888888877754445577777788888877
Q ss_pred ceeee-ecchhhhccCCcee
Q 034189 83 NYLSG-RIPTFIAKWVNLYA 101 (102)
Q Consensus 83 n~~~~-~~~~~~~~l~~L~~ 101 (102)
|.+.+ ..|..++++++|+.
T Consensus 108 n~l~~~~~~~~~~~l~~L~~ 127 (549)
T 2z81_A 108 NPYQTLGVTSLFPNLTNLQT 127 (549)
T ss_dssp CCCSSSCSSCSCTTCTTCCE
T ss_pred CcccccchhhhhhccCCccE
Confidence 77764 23455666666654
No 47
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.59 E-value=7.5e-15 Score=86.58 Aligned_cols=96 Identities=25% Similarity=0.269 Sum_probs=45.4
Q ss_pred EEEecCCcceecCChhhcCCCCCCEEEeecccceecCChhhcCCCCCcEEEcccceeceecChhhcCCCCCcEEEcccce
Q 034189 5 RSNLGQNLLTGKIPPSLGRLSSLQTLSLLENGLNGTLPPELGKLSNLQKLRLQSNNLRGDLPKDYENLKNLTIFGIAGNY 84 (102)
Q Consensus 5 ~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~p~~~~~~~~L~~l~l~~n~ 84 (102)
+|++++|.+++..+..+..+++|+.+++++|.+++..+..+..+++|+.+++++|++....+..+..+++|+++++++|.
T Consensus 113 ~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~ 192 (270)
T 2o6q_A 113 ELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQ 192 (270)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCc
Confidence 44444444443333334445555555555555542222224455555555555555553333344555555555555555
Q ss_pred eeeecchhhhccCCce
Q 034189 85 LSGRIPTFIAKWVNLY 100 (102)
Q Consensus 85 ~~~~~~~~~~~l~~L~ 100 (102)
++...+..+..+++|+
T Consensus 193 l~~~~~~~~~~l~~L~ 208 (270)
T 2o6q_A 193 LKRVPEGAFDSLEKLK 208 (270)
T ss_dssp CSCCCTTTTTTCTTCC
T ss_pred CCcCCHHHhccccCCC
Confidence 5533333344444444
No 48
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.59 E-value=1.2e-15 Score=100.44 Aligned_cols=96 Identities=28% Similarity=0.339 Sum_probs=77.1
Q ss_pred eEEEEecCCcceecCChhhcCCCCCCEEEeecccceecCChhhcCCCCCcEEEcccceeceecChhhcCCCCCcEEEccc
Q 034189 3 SCRSNLGQNLLTGKIPPSLGRLSSLQTLSLLENGLNGTLPPELGKLSNLQKLRLQSNNLRGDLPKDYENLKNLTIFGIAG 82 (102)
Q Consensus 3 ~~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~p~~~~~~~~L~~l~l~~ 82 (102)
.+.|++++|.+. .+|..+..+++|+.|++++|.++ .+|..+..+++|++|++++|+++ .+|..+..+++|++|++++
T Consensus 226 L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~ 302 (727)
T 4b8c_D 226 WHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFD 302 (727)
T ss_dssp CCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCS
T ss_pred CcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCC
Confidence 356888888888 77777778888888888888888 77877888888888888888888 6788888888888888888
Q ss_pred ceeeeecchhhhccCCceeC
Q 034189 83 NYLSGRIPTFIAKWVNLYAL 102 (102)
Q Consensus 83 n~~~~~~~~~~~~l~~L~~l 102 (102)
|.++ .+|..++.+++|+.|
T Consensus 303 N~l~-~lp~~~~~l~~L~~L 321 (727)
T 4b8c_D 303 NMVT-TLPWEFGNLCNLQFL 321 (727)
T ss_dssp SCCC-CCCSSTTSCTTCCCE
T ss_pred CCCC-ccChhhhcCCCccEE
Confidence 8887 677778877777653
No 49
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.59 E-value=6.3e-15 Score=87.01 Aligned_cols=97 Identities=25% Similarity=0.228 Sum_probs=44.3
Q ss_pred EEEecCCcceecCChhhcCCCCCCEEEeecccceecCChhhcCCCCCcEEEcccceeceecChhhcCCCCCcEEEcccce
Q 034189 5 RSNLGQNLLTGKIPPSLGRLSSLQTLSLLENGLNGTLPPELGKLSNLQKLRLQSNNLRGDLPKDYENLKNLTIFGIAGNY 84 (102)
Q Consensus 5 ~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~p~~~~~~~~L~~l~l~~n~ 84 (102)
+|++++|.+++..+..+..+++|+.+++++|.+++..+..+..+++|+.+++++|++....+..+..+++|+++++++|.
T Consensus 56 ~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 135 (276)
T 2z62_A 56 VLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNL 135 (276)
T ss_dssp EEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSC
T ss_pred EEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCc
Confidence 34444444443333334444444444444444443333334444444444444444442222234455555555665555
Q ss_pred eeee-cchhhhccCCcee
Q 034189 85 LSGR-IPTFIAKWVNLYA 101 (102)
Q Consensus 85 ~~~~-~~~~~~~l~~L~~ 101 (102)
+.+. +|..+..+++|+.
T Consensus 136 l~~~~l~~~~~~l~~L~~ 153 (276)
T 2z62_A 136 IQSFKLPEYFSNLTNLEH 153 (276)
T ss_dssp CCCCCCCGGGGGCTTCCE
T ss_pred cceecCchhhccCCCCCE
Confidence 5532 3555555555543
No 50
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.59 E-value=8.3e-15 Score=86.38 Aligned_cols=83 Identities=28% Similarity=0.317 Sum_probs=37.0
Q ss_pred EEEEecCCcceecCChhhcCCCCCCEEEeecccceecCChhhcCCCCCcEEEcccceeceecChhhcCCCCCcEEEcccc
Q 034189 4 CRSNLGQNLLTGKIPPSLGRLSSLQTLSLLENGLNGTLPPELGKLSNLQKLRLQSNNLRGDLPKDYENLKNLTIFGIAGN 83 (102)
Q Consensus 4 ~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~p~~~~~~~~L~~l~l~~n 83 (102)
++|++++|.++...+..+..+++|+.+++++|.++...+..+..+++|+.+++++|++....+..+..+++|+++++++|
T Consensus 64 ~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 143 (270)
T 2o6q_A 64 RLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYN 143 (270)
T ss_dssp CEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCC
Confidence 44555555555222223444555555555555554222223344444444444444444332333344444444444444
Q ss_pred eee
Q 034189 84 YLS 86 (102)
Q Consensus 84 ~~~ 86 (102)
.+.
T Consensus 144 ~l~ 146 (270)
T 2o6q_A 144 ELQ 146 (270)
T ss_dssp CCC
T ss_pred cCC
Confidence 444
No 51
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.59 E-value=8.5e-15 Score=81.61 Aligned_cols=96 Identities=23% Similarity=0.237 Sum_probs=80.4
Q ss_pred EEEEecCCcceecCChhhcCCCCCCEEEeecccceecCChhhcCCCCCcEEEcccceeceecChhhcCCCCCcEEEcccc
Q 034189 4 CRSNLGQNLLTGKIPPSLGRLSSLQTLSLLENGLNGTLPPELGKLSNLQKLRLQSNNLRGDLPKDYENLKNLTIFGIAGN 83 (102)
Q Consensus 4 ~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~p~~~~~~~~L~~l~l~~n 83 (102)
+.+++++|.++ .+|..+. ++++.|++++|.+++..|..+..+++|+.+++++|++++..+..+..+++|++|++++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 46899999998 7887654 89999999999999666777899999999999999999544455789999999999999
Q ss_pred eeeeecchhhhccCCceeC
Q 034189 84 YLSGRIPTFIAKWVNLYAL 102 (102)
Q Consensus 84 ~~~~~~~~~~~~l~~L~~l 102 (102)
.+.+..+..+..+++|+.|
T Consensus 92 ~l~~l~~~~~~~l~~L~~L 110 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHI 110 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEE
T ss_pred ccceeCHHHhccccCCCEE
Confidence 9995544558888888753
No 52
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.59 E-value=3.5e-15 Score=94.56 Aligned_cols=97 Identities=20% Similarity=0.136 Sum_probs=76.4
Q ss_pred eEEEEecCCcceecCChhhcCCCCCCEEEeecccceecCChhhcCCCCCcEEEcccceeceecChhhcCCCCCcEEEccc
Q 034189 3 SCRSNLGQNLLTGKIPPSLGRLSSLQTLSLLENGLNGTLPPELGKLSNLQKLRLQSNNLRGDLPKDYENLKNLTIFGIAG 82 (102)
Q Consensus 3 ~~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~p~~~~~~~~L~~l~l~~ 82 (102)
.++|++++|.+++..|..+..+++|+.+++++|.+++..|..+..+++|+++++++|++. .+|.. .+++|+++++++
T Consensus 23 L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L~~ 99 (520)
T 2z7x_B 23 TTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH--PTVNLKHLDLSF 99 (520)
T ss_dssp CSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC--CCCCCSEEECCS
T ss_pred ccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc--ccCCccEEeccC
Confidence 457888888888555567888888888888888888666777888888888888888888 56655 778888888888
Q ss_pred ceeee-ecchhhhccCCceeC
Q 034189 83 NYLSG-RIPTFIAKWVNLYAL 102 (102)
Q Consensus 83 n~~~~-~~~~~~~~l~~L~~l 102 (102)
|.+++ .+|..++++++|+.|
T Consensus 100 N~l~~~~~p~~~~~l~~L~~L 120 (520)
T 2z7x_B 100 NAFDALPICKEFGNMSQLKFL 120 (520)
T ss_dssp SCCSSCCCCGGGGGCTTCCEE
T ss_pred CccccccchhhhccCCcceEE
Confidence 88875 356778888887753
No 53
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.59 E-value=1e-14 Score=82.51 Aligned_cols=95 Identities=19% Similarity=0.220 Sum_probs=82.7
Q ss_pred EEEEecCCcceecCChhhcCCCCCCEEEeecccceecCChhhcCCCCCcEEEcccceeceecChhhcCCCCCcEEEcccc
Q 034189 4 CRSNLGQNLLTGKIPPSLGRLSSLQTLSLLENGLNGTLPPELGKLSNLQKLRLQSNNLRGDLPKDYENLKNLTIFGIAGN 83 (102)
Q Consensus 4 ~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~p~~~~~~~~L~~l~l~~n 83 (102)
+.+++++|.++ .+|..+. ..++.+++++|.++ .+|..+..+++|+.+++++|+++...+..|..+++|++|++++|
T Consensus 13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 36889999999 7786543 68999999999999 78888999999999999999999666678999999999999999
Q ss_pred eeeeecchhhhccCCceeC
Q 034189 84 YLSGRIPTFIAKWVNLYAL 102 (102)
Q Consensus 84 ~~~~~~~~~~~~l~~L~~l 102 (102)
.+++..+..|..+++|+.|
T Consensus 89 ~l~~i~~~~f~~l~~L~~L 107 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLL 107 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEE
T ss_pred ccCEeCHHHhCCCCCCCEE
Confidence 9997777789888888753
No 54
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.59 E-value=6.4e-15 Score=88.05 Aligned_cols=10 Identities=40% Similarity=0.361 Sum_probs=3.6
Q ss_pred CCcEEEcccc
Q 034189 50 NLQKLRLQSN 59 (102)
Q Consensus 50 ~L~~l~l~~n 59 (102)
+|+.+++++|
T Consensus 176 ~L~~L~Ls~n 185 (306)
T 2z66_A 176 NLTFLDLSQC 185 (306)
T ss_dssp TCCEEECTTS
T ss_pred CCCEEECCCC
Confidence 3333333333
No 55
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.58 E-value=7e-15 Score=94.79 Aligned_cols=100 Identities=18% Similarity=0.097 Sum_probs=74.3
Q ss_pred eEEEEecCCcceecCChhhcCCCCCCEEEeecccceecCChhhcCCCCCcEEEcccceeceecChhhcCCCCCcEEEccc
Q 034189 3 SCRSNLGQNLLTGKIPPSLGRLSSLQTLSLLENGLNGTLPPELGKLSNLQKLRLQSNNLRGDLPKDYENLKNLTIFGIAG 82 (102)
Q Consensus 3 ~~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~p~~~~~~~~L~~l~l~~ 82 (102)
.+.|++++|.+++..+..+..+++|+.|++++|.+++..|..+..+++|+++++++|.+....+..+..+++|++|++++
T Consensus 77 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~ 156 (597)
T 3oja_B 77 VELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSN 156 (597)
T ss_dssp CSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeC
Confidence 45788888888866666788888888888888888855555577888888888888888733334457788888888888
Q ss_pred ceeeeecchhhhccCCceeC
Q 034189 83 NYLSGRIPTFIAKWVNLYAL 102 (102)
Q Consensus 83 n~~~~~~~~~~~~l~~L~~l 102 (102)
|.+.+..|..+..+++|+.|
T Consensus 157 N~l~~~~~~~~~~l~~L~~L 176 (597)
T 3oja_B 157 NNLERIEDDTFQATTSLQNL 176 (597)
T ss_dssp SCCCBCCTTTTTTCTTCCEE
T ss_pred CcCCCCChhhhhcCCcCcEE
Confidence 88886666677777777653
No 56
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.58 E-value=3.1e-15 Score=97.10 Aligned_cols=61 Identities=18% Similarity=0.304 Sum_probs=41.7
Q ss_pred CChhhcCCCCCcEEEcccceecee-----------------cChhhc--CCCCCcEEEcccceeeeecchhhhccCCcee
Q 034189 41 LPPELGKLSNLQKLRLQSNNLRGD-----------------LPKDYE--NLKNLTIFGIAGNYLSGRIPTFIAKWVNLYA 101 (102)
Q Consensus 41 ~~~~~~~~~~L~~l~l~~n~~~~~-----------------~p~~~~--~~~~L~~l~l~~n~~~~~~~~~~~~l~~L~~ 101 (102)
+|+.+..+++|+++++++|++++. +|..+. .+++|++|++++|.+.+.+|..++++++|+.
T Consensus 198 ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 277 (636)
T 4eco_A 198 VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQL 277 (636)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCE
T ss_pred CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCE
Confidence 556666677777777777777643 666666 6777777777777766677766776666664
No 57
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.58 E-value=9.1e-15 Score=86.33 Aligned_cols=97 Identities=20% Similarity=0.092 Sum_probs=52.0
Q ss_pred EEEEecCCcceecCChhhcCCCCCCEEEeecccceecCChhhcCCCCCcEEEcccceeceecChhhcCCCCCcEEEcccc
Q 034189 4 CRSNLGQNLLTGKIPPSLGRLSSLQTLSLLENGLNGTLPPELGKLSNLQKLRLQSNNLRGDLPKDYENLKNLTIFGIAGN 83 (102)
Q Consensus 4 ~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~p~~~~~~~~L~~l~l~~n 83 (102)
++|++++|.+++..+..+..+++|+.+++++|.+++..+..+..+++|+.+++++|++....+..+..+++|+++++++|
T Consensus 31 ~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n 110 (276)
T 2z62_A 31 KNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVET 110 (276)
T ss_dssp CEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTS
T ss_pred cEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCC
Confidence 45556666655443445555566666666666555333334555556666666666555444445555566666666655
Q ss_pred eeeeecchhhhccCCce
Q 034189 84 YLSGRIPTFIAKWVNLY 100 (102)
Q Consensus 84 ~~~~~~~~~~~~l~~L~ 100 (102)
.+.+..+..+..+++|+
T Consensus 111 ~l~~~~~~~~~~l~~L~ 127 (276)
T 2z62_A 111 NLASLENFPIGHLKTLK 127 (276)
T ss_dssp CCCCSTTCCCTTCTTCC
T ss_pred CccccCchhcccCCCCC
Confidence 55533333444555444
No 58
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.58 E-value=7.9e-15 Score=92.16 Aligned_cols=98 Identities=26% Similarity=0.268 Sum_probs=74.0
Q ss_pred eEEEEecCCcceecCChhhcCCCCCCEEEeecccceecCCh-hhcCCCCCcEEEcccceeceecChhhcCCCCCcEEEcc
Q 034189 3 SCRSNLGQNLLTGKIPPSLGRLSSLQTLSLLENGLNGTLPP-ELGKLSNLQKLRLQSNNLRGDLPKDYENLKNLTIFGIA 81 (102)
Q Consensus 3 ~~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~-~~~~~~~L~~l~l~~n~~~~~~p~~~~~~~~L~~l~l~ 81 (102)
.++|++++|.+++..|..|..+++|+.|++++|.++ .+|. .+..+++|+.+++++|++....|..+..+++|+.|+++
T Consensus 58 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~ 136 (477)
T 2id5_A 58 LEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK-LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVG 136 (477)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-SCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEEC
T ss_pred CCEEECCCCccCEeChhhhhCCccCCEEECCCCcCC-ccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECC
Confidence 467888888888766777888888888888888888 4444 46778888888888888876666677777888888888
Q ss_pred cceeeeecchhhhccCCcee
Q 034189 82 GNYLSGRIPTFIAKWVNLYA 101 (102)
Q Consensus 82 ~n~~~~~~~~~~~~l~~L~~ 101 (102)
+|.+.+..+..+..+++|+.
T Consensus 137 ~n~l~~~~~~~~~~l~~L~~ 156 (477)
T 2id5_A 137 DNDLVYISHRAFSGLNSLEQ 156 (477)
T ss_dssp CTTCCEECTTSSTTCTTCCE
T ss_pred CCccceeChhhccCCCCCCE
Confidence 87777666666666666654
No 59
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.58 E-value=1e-14 Score=91.07 Aligned_cols=99 Identities=20% Similarity=0.131 Sum_probs=73.0
Q ss_pred eEEEEecCCcceecCChhhcCCCCCCEEEeecccceecCChhhcCCCCCcEEEcccceeceecChhhcCCCCCcEEEccc
Q 034189 3 SCRSNLGQNLLTGKIPPSLGRLSSLQTLSLLENGLNGTLPPELGKLSNLQKLRLQSNNLRGDLPKDYENLKNLTIFGIAG 82 (102)
Q Consensus 3 ~~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~p~~~~~~~~L~~l~l~~ 82 (102)
++.|++++|.++...+..|..+++|+.|++++|.++...+..+..+++|+.+++++|+++...+..+..+++|++|++++
T Consensus 66 l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 145 (440)
T 3zyj_A 66 TRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRN 145 (440)
T ss_dssp CSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCS
T ss_pred CcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCC
Confidence 35688888888866667788888888888888888855556677888888888888888744444677788888888888
Q ss_pred ceeeeecchhhhccCCcee
Q 034189 83 NYLSGRIPTFIAKWVNLYA 101 (102)
Q Consensus 83 n~~~~~~~~~~~~l~~L~~ 101 (102)
|.+....+..+..+++|+.
T Consensus 146 N~i~~~~~~~~~~l~~L~~ 164 (440)
T 3zyj_A 146 NPIESIPSYAFNRIPSLRR 164 (440)
T ss_dssp CCCCEECTTTTTTCTTCCE
T ss_pred CcccccCHHHhhhCcccCE
Confidence 8777554455666666654
No 60
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.58 E-value=9.4e-15 Score=93.51 Aligned_cols=97 Identities=19% Similarity=0.143 Sum_probs=78.3
Q ss_pred eEEEEecCCcceecCChhhcCCCCCCEEEeecccceecCChhhcCCCCCcEEEcccceeceecChhhcCCCCCcEEEccc
Q 034189 3 SCRSNLGQNLLTGKIPPSLGRLSSLQTLSLLENGLNGTLPPELGKLSNLQKLRLQSNNLRGDLPKDYENLKNLTIFGIAG 82 (102)
Q Consensus 3 ~~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~p~~~~~~~~L~~l~l~~ 82 (102)
.++|++++|.+++..+..+..+++|+.+++++|.+++..|..+..+++|+++++++|+++ .+|.. .+++|++|++++
T Consensus 54 L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~Ls~ 130 (562)
T 3a79_B 54 TKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHLDLSF 130 (562)
T ss_dssp CCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSEEECCS
T ss_pred cCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCEEECCC
Confidence 467889999988655677888999999999999988666777888889999999999888 66655 788899999998
Q ss_pred ceeee-ecchhhhccCCceeC
Q 034189 83 NYLSG-RIPTFIAKWVNLYAL 102 (102)
Q Consensus 83 n~~~~-~~~~~~~~l~~L~~l 102 (102)
|.+.+ ..|..++++++|+.|
T Consensus 131 N~l~~l~~p~~~~~l~~L~~L 151 (562)
T 3a79_B 131 NDFDVLPVCKEFGNLTKLTFL 151 (562)
T ss_dssp SCCSBCCCCGGGGGCTTCCEE
T ss_pred CCccccCchHhhcccCcccEE
Confidence 88875 335778888887753
No 61
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.58 E-value=4.3e-15 Score=82.78 Aligned_cols=80 Identities=16% Similarity=0.119 Sum_probs=35.3
Q ss_pred EEEEecCCcceecCChhhcCCCCCCEEEeecccceecCChhhcCCCCCcEEEcccceeceecChhhcCCCCCcEEEcccc
Q 034189 4 CRSNLGQNLLTGKIPPSLGRLSSLQTLSLLENGLNGTLPPELGKLSNLQKLRLQSNNLRGDLPKDYENLKNLTIFGIAGN 83 (102)
Q Consensus 4 ~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~p~~~~~~~~L~~l~l~~n 83 (102)
++|++++|.++ .++......++|+.+++++|.+++. +.+..+++|+.+++++|++....+..+..+++|+++++++|
T Consensus 22 ~~L~l~~n~l~-~i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N 98 (176)
T 1a9n_A 22 RELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNN 98 (176)
T ss_dssp EEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSC
T ss_pred eEEEeeCCCCc-hhHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCC
Confidence 44555555555 3332222222555555555555422 23444445555555555544222222344445555555555
Q ss_pred eee
Q 034189 84 YLS 86 (102)
Q Consensus 84 ~~~ 86 (102)
.+.
T Consensus 99 ~i~ 101 (176)
T 1a9n_A 99 SLV 101 (176)
T ss_dssp CCC
T ss_pred cCC
Confidence 443
No 62
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.57 E-value=1.4e-14 Score=82.00 Aligned_cols=94 Identities=15% Similarity=0.193 Sum_probs=53.0
Q ss_pred EEEEecCCcceecCChhhcCCCCCCEEEeecccceecCChhhcCCCCCcEEEcccceeceecChhhcCCCCCcEEEcccc
Q 034189 4 CRSNLGQNLLTGKIPPSLGRLSSLQTLSLLENGLNGTLPPELGKLSNLQKLRLQSNNLRGDLPKDYENLKNLTIFGIAGN 83 (102)
Q Consensus 4 ~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~p~~~~~~~~L~~l~l~~n 83 (102)
++|++++|.++ . +..+..+++|+.+++++|.+++..+..+..+++|+.+++++|++.+..|..+..+++|+++++++|
T Consensus 69 ~~L~l~~n~~~-~-~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n 146 (197)
T 4ezg_A 69 KDLTINNIHAT-N-YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYN 146 (197)
T ss_dssp SEEEEESCCCS-C-CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSC
T ss_pred CEEEccCCCCC-c-chhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCC
Confidence 34555555443 2 224555666666666666666444555566666666666666666444555666666666666666
Q ss_pred e-eeeecchhhhccCCcee
Q 034189 84 Y-LSGRIPTFIAKWVNLYA 101 (102)
Q Consensus 84 ~-~~~~~~~~~~~l~~L~~ 101 (102)
. +. .++ .+..+++|+.
T Consensus 147 ~~i~-~~~-~l~~l~~L~~ 163 (197)
T 4ezg_A 147 GAIT-DIM-PLKTLPELKS 163 (197)
T ss_dssp TBCC-CCG-GGGGCSSCCE
T ss_pred CCcc-ccH-hhcCCCCCCE
Confidence 5 44 443 3555555543
No 63
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.57 E-value=1.3e-14 Score=86.55 Aligned_cols=98 Identities=29% Similarity=0.169 Sum_probs=81.4
Q ss_pred eEEEEecCCcceecCChhhcCCCCCCEEEeecccceecCChhhcCCCCCcEEEcccceeceecChhhcCCCCCcEEEccc
Q 034189 3 SCRSNLGQNLLTGKIPPSLGRLSSLQTLSLLENGLNGTLPPELGKLSNLQKLRLQSNNLRGDLPKDYENLKNLTIFGIAG 82 (102)
Q Consensus 3 ~~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~p~~~~~~~~L~~l~l~~ 82 (102)
.++|++++|.+++..+..|..+++|+.+++++|.++...+..+..+++|+.+++++|+++...+..+..+++|+++++++
T Consensus 102 L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~ 181 (290)
T 1p9a_G 102 LTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQE 181 (290)
T ss_dssp CCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCC
Confidence 46899999999965567799999999999999999944444578899999999999999944345578899999999999
Q ss_pred ceeeeecchhhhccCCcee
Q 034189 83 NYLSGRIPTFIAKWVNLYA 101 (102)
Q Consensus 83 n~~~~~~~~~~~~l~~L~~ 101 (102)
|.++ .+|..+....+|+.
T Consensus 182 N~l~-~ip~~~~~~~~L~~ 199 (290)
T 1p9a_G 182 NSLY-TIPKGFFGSHLLPF 199 (290)
T ss_dssp SCCC-CCCTTTTTTCCCSE
T ss_pred CcCC-ccChhhcccccCCe
Confidence 9999 77877777666654
No 64
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.57 E-value=1.2e-14 Score=89.38 Aligned_cols=98 Identities=19% Similarity=0.163 Sum_probs=67.1
Q ss_pred eEEEEecCCcceecCChhhcCCCCCCEEEeecccceecCChhhcCCCCCcEEEcccceeceecCh-hhcCCCCCcEEEcc
Q 034189 3 SCRSNLGQNLLTGKIPPSLGRLSSLQTLSLLENGLNGTLPPELGKLSNLQKLRLQSNNLRGDLPK-DYENLKNLTIFGIA 81 (102)
Q Consensus 3 ~~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~p~-~~~~~~~L~~l~l~ 81 (102)
.++|++++|.++...+..+..+++|+.+++++|.+++..|..+..+++|+.+++++|++. .+|. .+..+++|++++++
T Consensus 71 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~ 149 (390)
T 3o6n_A 71 VELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMS 149 (390)
T ss_dssp CSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECC
T ss_pred CcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccC-cCCHHHhcCCCCCcEEECC
Confidence 356777777777555556777777777777777777544555677777777777777777 4443 35677777777777
Q ss_pred cceeeeecchhhhccCCcee
Q 034189 82 GNYLSGRIPTFIAKWVNLYA 101 (102)
Q Consensus 82 ~n~~~~~~~~~~~~l~~L~~ 101 (102)
+|.+.+..+..+..+++|+.
T Consensus 150 ~n~l~~~~~~~~~~l~~L~~ 169 (390)
T 3o6n_A 150 NNNLERIEDDTFQATTSLQN 169 (390)
T ss_dssp SSCCCBCCTTTTSSCTTCCE
T ss_pred CCccCccChhhccCCCCCCE
Confidence 77777555556666666654
No 65
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.56 E-value=2e-14 Score=85.88 Aligned_cols=99 Identities=19% Similarity=0.213 Sum_probs=70.8
Q ss_pred eEEEEecCCcceecCC-hhhcCCCCCCEEEeecccceecCChhhcCCCCCcEEEcccceece-ecChhhcCCCCCcEEEc
Q 034189 3 SCRSNLGQNLLTGKIP-PSLGRLSSLQTLSLLENGLNGTLPPELGKLSNLQKLRLQSNNLRG-DLPKDYENLKNLTIFGI 80 (102)
Q Consensus 3 ~~~L~l~~n~~~~~~~-~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~-~~p~~~~~~~~L~~l~l 80 (102)
.++|++++|.+++..+ ..+..+++|+.+++++|.+.+..+..+..+++|+.+++++|++.+ ..|..+..+++|+++++
T Consensus 103 L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L 182 (306)
T 2z66_A 103 LEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDL 182 (306)
T ss_dssp CCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEEC
T ss_pred CCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEEC
Confidence 3566777777773332 356777778888888887776666667777888888888887774 45677777788888888
Q ss_pred ccceeeeecchhhhccCCcee
Q 034189 81 AGNYLSGRIPTFIAKWVNLYA 101 (102)
Q Consensus 81 ~~n~~~~~~~~~~~~l~~L~~ 101 (102)
++|.+.+..+..+..+++|+.
T Consensus 183 s~n~l~~~~~~~~~~l~~L~~ 203 (306)
T 2z66_A 183 SQCQLEQLSPTAFNSLSSLQV 203 (306)
T ss_dssp TTSCCCEECTTTTTTCTTCCE
T ss_pred CCCCcCCcCHHHhcCCCCCCE
Confidence 888877666677777777664
No 66
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.56 E-value=9.5e-15 Score=93.19 Aligned_cols=98 Identities=21% Similarity=0.277 Sum_probs=58.2
Q ss_pred EEEEecCCcceecCChhhcCCCCCCEEEeecccce-ecCChhhcCCCCCcEEEcccceeceecChhhcCCCCCcEEEccc
Q 034189 4 CRSNLGQNLLTGKIPPSLGRLSSLQTLSLLENGLN-GTLPPELGKLSNLQKLRLQSNNLRGDLPKDYENLKNLTIFGIAG 82 (102)
Q Consensus 4 ~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~~~-~~~~~~~~~~~~L~~l~l~~n~~~~~~p~~~~~~~~L~~l~l~~ 82 (102)
++|++++|.+.+..+..+..+++|+.+++++|.++ +.+|..+..+++|+.+++++|++.+..|..+..+++|+++++++
T Consensus 424 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 503 (570)
T 2z63_A 424 IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMAS 503 (570)
T ss_dssp CEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCC
Confidence 45556666655555555556666666666666654 23455555666666666666666655555666666666666666
Q ss_pred ceeeeecchhhhccCCcee
Q 034189 83 NYLSGRIPTFIAKWVNLYA 101 (102)
Q Consensus 83 n~~~~~~~~~~~~l~~L~~ 101 (102)
|.+++..+..+..+++|+.
T Consensus 504 n~l~~~~~~~~~~l~~L~~ 522 (570)
T 2z63_A 504 NQLKSVPDGIFDRLTSLQK 522 (570)
T ss_dssp SCCSCCCTTTTTTCTTCCE
T ss_pred CcCCCCCHHHhhcccCCcE
Confidence 6666554455555555553
No 67
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.56 E-value=2.6e-14 Score=79.56 Aligned_cols=96 Identities=23% Similarity=0.191 Sum_probs=80.3
Q ss_pred eEEEEecCCcceecCChhhcCCCCCCEEEeecccceecCChhhcCCCCCcEEEcccceeceecCh--hhcCCCCCcEEEc
Q 034189 3 SCRSNLGQNLLTGKIPPSLGRLSSLQTLSLLENGLNGTLPPELGKLSNLQKLRLQSNNLRGDLPK--DYENLKNLTIFGI 80 (102)
Q Consensus 3 ~~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~p~--~~~~~~~L~~l~l 80 (102)
.++|++++|.+++. ..+..+++|+.+++++|.+++..+..+..+++|+.+++++|++. .+|. .+..+++|+.+++
T Consensus 44 L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l 120 (176)
T 1a9n_A 44 FDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCI 120 (176)
T ss_dssp CSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEEC
T ss_pred CCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEe
Confidence 57899999999954 67889999999999999999443334588999999999999997 6665 7888999999999
Q ss_pred ccceeeeecchh----hhccCCceeC
Q 034189 81 AGNYLSGRIPTF----IAKWVNLYAL 102 (102)
Q Consensus 81 ~~n~~~~~~~~~----~~~l~~L~~l 102 (102)
++|.+. .+|.. +..+++|+.|
T Consensus 121 ~~N~i~-~~~~~~~~~~~~l~~L~~L 145 (176)
T 1a9n_A 121 LRNPVT-NKKHYRLYVIYKVPQVRVL 145 (176)
T ss_dssp CSSGGG-GSTTHHHHHHHHCTTCSEE
T ss_pred cCCCCC-CcHhHHHHHHHHCCcccee
Confidence 999998 56664 7888888753
No 68
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.56 E-value=1.1e-14 Score=88.56 Aligned_cols=97 Identities=25% Similarity=0.292 Sum_probs=57.0
Q ss_pred EEEEecCCcceecCChhhcCCCCCCEEEeecccceecCChhhcCCCCCcEEEcccceeceecChhhcCCCCCcEEEcccc
Q 034189 4 CRSNLGQNLLTGKIPPSLGRLSSLQTLSLLENGLNGTLPPELGKLSNLQKLRLQSNNLRGDLPKDYENLKNLTIFGIAGN 83 (102)
Q Consensus 4 ~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~p~~~~~~~~L~~l~l~~n 83 (102)
++|++++|.+++..+..+..+++|+.+++++|.+++..+..+..+++|+++++++|+++...+..+..+++|+++++++|
T Consensus 55 ~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n 134 (353)
T 2z80_A 55 KSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGN 134 (353)
T ss_dssp CEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTC
T ss_pred cEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCC
Confidence 45666666666444445666666666666666666444455666666666666666666322233566666666666666
Q ss_pred eeeeecch--hhhccCCcee
Q 034189 84 YLSGRIPT--FIAKWVNLYA 101 (102)
Q Consensus 84 ~~~~~~~~--~~~~l~~L~~ 101 (102)
.+. .++. .+..+++|+.
T Consensus 135 ~l~-~l~~~~~~~~l~~L~~ 153 (353)
T 2z80_A 135 PYK-TLGETSLFSHLTKLQI 153 (353)
T ss_dssp CCS-SSCSSCSCTTCTTCCE
T ss_pred CCc-ccCchhhhccCCCCcE
Confidence 666 3333 4555555543
No 69
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.55 E-value=1.1e-14 Score=96.96 Aligned_cols=97 Identities=23% Similarity=0.115 Sum_probs=53.1
Q ss_pred EEEEecCCcceecCChhhcCCCCCCEEEeecccceecC-ChhhcCCCCCcEEEcccceeceecChhhcCCCCCcEEEccc
Q 034189 4 CRSNLGQNLLTGKIPPSLGRLSSLQTLSLLENGLNGTL-PPELGKLSNLQKLRLQSNNLRGDLPKDYENLKNLTIFGIAG 82 (102)
Q Consensus 4 ~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~-~~~~~~~~~L~~l~l~~n~~~~~~p~~~~~~~~L~~l~l~~ 82 (102)
++|++++|.+++..+..+..+.+|+.|++++|...+.+ |..+..+++|+++++++|++.+..|..+..+++|++|++++
T Consensus 27 ~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~ 106 (844)
T 3j0a_A 27 ERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYF 106 (844)
T ss_dssp CEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTT
T ss_pred CEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcC
Confidence 46677777766555555666666666666665333233 34455555666666666655544455555555555555555
Q ss_pred ceeeeecchh--hhccCCce
Q 034189 83 NYLSGRIPTF--IAKWVNLY 100 (102)
Q Consensus 83 n~~~~~~~~~--~~~l~~L~ 100 (102)
|.+.+.++.. +.++++|+
T Consensus 107 n~l~~~~~~~~~~~~L~~L~ 126 (844)
T 3j0a_A 107 CGLSDAVLKDGYFRNLKALT 126 (844)
T ss_dssp CCCSSCCSTTCCCSSCSSCC
T ss_pred CCCCcccccCccccccCCCC
Confidence 5555433332 44444444
No 70
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.55 E-value=4e-15 Score=96.61 Aligned_cols=98 Identities=21% Similarity=0.298 Sum_probs=75.1
Q ss_pred eEEEEecCCcceec-----------------CChhhc--CCCCCCEEEeecccceecCChhhcCCCCCcEEEcccce-ec
Q 034189 3 SCRSNLGQNLLTGK-----------------IPPSLG--RLSSLQTLSLLENGLNGTLPPELGKLSNLQKLRLQSNN-LR 62 (102)
Q Consensus 3 ~~~L~l~~n~~~~~-----------------~~~~~~--~l~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~-~~ 62 (102)
.++|++++|.+++. +|..+. .+++|+.+++++|.+.+.+|..+..+++|+.+++++|+ ++
T Consensus 208 L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~ 287 (636)
T 4eco_A 208 LRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGIS 287 (636)
T ss_dssp CCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSC
T ss_pred CCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCc
Confidence 46788888888864 777777 88888888888888877778778888888888888887 77
Q ss_pred e-ecChhhcCC------CCCcEEEcccceeeeecch--hhhccCCcee
Q 034189 63 G-DLPKDYENL------KNLTIFGIAGNYLSGRIPT--FIAKWVNLYA 101 (102)
Q Consensus 63 ~-~~p~~~~~~------~~L~~l~l~~n~~~~~~~~--~~~~l~~L~~ 101 (102)
+ .+|..+..+ ++|+++++++|.++ .+|. .++++++|+.
T Consensus 288 ~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~ 334 (636)
T 4eco_A 288 GEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGM 334 (636)
T ss_dssp HHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCE
T ss_pred cccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCE
Confidence 6 567666554 77777888777777 6676 6777777664
No 71
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.55 E-value=2.2e-14 Score=91.49 Aligned_cols=97 Identities=25% Similarity=0.248 Sum_probs=47.3
Q ss_pred EEEecCCcceecCChhhcCCCCCCEEEeecccceecCChhhcCCCCCcEEEcccceeceecChhhcCCCCCcEEEcccce
Q 034189 5 RSNLGQNLLTGKIPPSLGRLSSLQTLSLLENGLNGTLPPELGKLSNLQKLRLQSNNLRGDLPKDYENLKNLTIFGIAGNY 84 (102)
Q Consensus 5 ~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~p~~~~~~~~L~~l~l~~n~ 84 (102)
+|++++|.+++..+..|..+++|+.+++++|.+++..+..+..+++|+++++++|++....+..+..+++|+++++++|.
T Consensus 56 ~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~ 135 (570)
T 2z63_A 56 VLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNL 135 (570)
T ss_dssp EEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSC
T ss_pred EEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCc
Confidence 44444444443333344444444444444444443333344444555555555554442212234555666666666666
Q ss_pred eee-ecchhhhccCCcee
Q 034189 85 LSG-RIPTFIAKWVNLYA 101 (102)
Q Consensus 85 ~~~-~~~~~~~~l~~L~~ 101 (102)
+.+ .+|..++++++|+.
T Consensus 136 l~~~~lp~~~~~l~~L~~ 153 (570)
T 2z63_A 136 IQSFKLPEYFSNLTNLEH 153 (570)
T ss_dssp CCCCCCCGGGGGCTTCCE
T ss_pred cceecChhhhcccCCCCE
Confidence 554 24566666666654
No 72
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.54 E-value=2.1e-14 Score=92.35 Aligned_cols=97 Identities=23% Similarity=0.346 Sum_probs=83.4
Q ss_pred eEEEEecCCcceecCChhhcCCCCCCEEEeecccceecCChhhcCCCCCcEEEcccceeceec-ChhhcCCCCCcEEEcc
Q 034189 3 SCRSNLGQNLLTGKIPPSLGRLSSLQTLSLLENGLNGTLPPELGKLSNLQKLRLQSNNLRGDL-PKDYENLKNLTIFGIA 81 (102)
Q Consensus 3 ~~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~-p~~~~~~~~L~~l~l~ 81 (102)
.+.|++++|.++ .+|..+..+++|+.|++++|.++ .+| .+..+++|+.+++++|++++.. |..+..+++|+.++++
T Consensus 465 L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~ 541 (567)
T 1dce_A 465 VTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQ 541 (567)
T ss_dssp CCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECT
T ss_pred CcEeecCccccc-ccchhhhcCCCCCEEECCCCCCC-CCc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEec
Confidence 568999999999 88999999999999999999999 467 7899999999999999999655 8899999999999999
Q ss_pred cceeeeecch---hhhccCCceeC
Q 034189 82 GNYLSGRIPT---FIAKWVNLYAL 102 (102)
Q Consensus 82 ~n~~~~~~~~---~~~~l~~L~~l 102 (102)
+|.+++..+. .+..+++|+.|
T Consensus 542 ~N~l~~~~~~~~~l~~~lp~L~~L 565 (567)
T 1dce_A 542 GNSLCQEEGIQERLAEMLPSVSSI 565 (567)
T ss_dssp TSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred CCcCCCCccHHHHHHHHCcccCcc
Confidence 9999865432 23446777653
No 73
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.54 E-value=4.5e-14 Score=85.69 Aligned_cols=87 Identities=17% Similarity=0.152 Sum_probs=58.4
Q ss_pred EEecCC-cceecCChhhcCCCCCCEEEeec-ccceecCChhhcCCCCCcEEEcccceeceecChhhcCCCCCcEEEcccc
Q 034189 6 SNLGQN-LLTGKIPPSLGRLSSLQTLSLLE-NGLNGTLPPELGKLSNLQKLRLQSNNLRGDLPKDYENLKNLTIFGIAGN 83 (102)
Q Consensus 6 L~l~~n-~~~~~~~~~~~~l~~L~~l~l~~-n~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~p~~~~~~~~L~~l~l~~n 83 (102)
++.+++ .++ .+|. +..+.+|+.|++++ |.+++..+..+..+++|+.|++++|++.+..|..|..+++|+.|+|++|
T Consensus 13 v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 13 LRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp EECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 456665 666 5666 77777777777774 7777444455777777777777777777665666777777777777777
Q ss_pred eeeeecchhhh
Q 034189 84 YLSGRIPTFIA 94 (102)
Q Consensus 84 ~~~~~~~~~~~ 94 (102)
.+++..+..+.
T Consensus 91 ~l~~~~~~~~~ 101 (347)
T 2ifg_A 91 ALESLSWKTVQ 101 (347)
T ss_dssp CCSCCCSTTTC
T ss_pred ccceeCHHHcc
Confidence 77743333343
No 74
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.53 E-value=1.8e-14 Score=93.69 Aligned_cols=95 Identities=25% Similarity=0.272 Sum_probs=39.7
Q ss_pred EEEecCCcceecCChhhcCCCCCCEEEeecccceecCCh-hhcCCCCCcEEEcccceeceecChhhcCCCCCcEEEcccc
Q 034189 5 RSNLGQNLLTGKIPPSLGRLSSLQTLSLLENGLNGTLPP-ELGKLSNLQKLRLQSNNLRGDLPKDYENLKNLTIFGIAGN 83 (102)
Q Consensus 5 ~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~-~~~~~~~L~~l~l~~n~~~~~~p~~~~~~~~L~~l~l~~n 83 (102)
+|++++|.+++..|..+..+++|+.+++++|.++ .+|. .+..+++|+++++++|++....|..+..+++|+++++++|
T Consensus 53 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n 131 (680)
T 1ziw_A 53 SLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS-QLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHN 131 (680)
T ss_dssp EEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSS
T ss_pred EEECCCCccCccCHHHHhcccCcCEEECCCCccC-ccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCC
Confidence 3444444444333333444444444444444444 2222 2444444444444444444222233444444444444444
Q ss_pred eeeeecchhhhccCCce
Q 034189 84 YLSGRIPTFIAKWVNLY 100 (102)
Q Consensus 84 ~~~~~~~~~~~~l~~L~ 100 (102)
.+.+..+..+.++++|+
T Consensus 132 ~l~~~~~~~~~~l~~L~ 148 (680)
T 1ziw_A 132 GLSSTKLGTQVQLENLQ 148 (680)
T ss_dssp CCSCCCCCSSSCCTTCC
T ss_pred cccccCchhhcccccCC
Confidence 44433333344444433
No 75
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.53 E-value=2.9e-14 Score=82.69 Aligned_cols=95 Identities=17% Similarity=0.176 Sum_probs=64.1
Q ss_pred eEEEEecCCcceecCChhhcCCCCCCEEEeeccc-ceecCChhhcCCCCCcEEEccc-ceeceecChhhcCCCCCcEEEc
Q 034189 3 SCRSNLGQNLLTGKIPPSLGRLSSLQTLSLLENG-LNGTLPPELGKLSNLQKLRLQS-NNLRGDLPKDYENLKNLTIFGI 80 (102)
Q Consensus 3 ~~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~-~~~~~~~~~~~~~~L~~l~l~~-n~~~~~~p~~~~~~~~L~~l~l 80 (102)
.++|++++|.+++..+..+..+++|+.+++++|. ++...+..+..+++|+.+++++ |+++...+..+..+++|+++++
T Consensus 33 l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l 112 (239)
T 2xwt_C 33 TQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGI 112 (239)
T ss_dssp CCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEE
T ss_pred ccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeC
Confidence 3567788888775555567777888888888886 6644344567777788888877 7777444456777777777777
Q ss_pred ccceeeeecchhhhccCCc
Q 034189 81 AGNYLSGRIPTFIAKWVNL 99 (102)
Q Consensus 81 ~~n~~~~~~~~~~~~l~~L 99 (102)
++|.+++ +|. +..+++|
T Consensus 113 ~~n~l~~-lp~-~~~l~~L 129 (239)
T 2xwt_C 113 FNTGLKM-FPD-LTKVYST 129 (239)
T ss_dssp EEECCCS-CCC-CTTCCBC
T ss_pred CCCCCcc-ccc-ccccccc
Confidence 7776663 444 4444444
No 76
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.53 E-value=2.1e-14 Score=93.44 Aligned_cols=100 Identities=27% Similarity=0.201 Sum_probs=85.4
Q ss_pred eEEEEecCCcceecCChhhcCCCCCCEEEeecccceecCChhhcCCCCCcEEEcccceeceecChhhcCCCCCcEEEccc
Q 034189 3 SCRSNLGQNLLTGKIPPSLGRLSSLQTLSLLENGLNGTLPPELGKLSNLQKLRLQSNNLRGDLPKDYENLKNLTIFGIAG 82 (102)
Q Consensus 3 ~~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~p~~~~~~~~L~~l~l~~ 82 (102)
.++|++++|.+++..+..+..+++|+.+++++|.+++..|..+..+++|+++++++|++....+..+..+++|+++++++
T Consensus 27 l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~ 106 (680)
T 1ziw_A 27 ITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMS 106 (680)
T ss_dssp CSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCS
T ss_pred CcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCC
Confidence 46799999999965566799999999999999999977777889999999999999999844334689999999999999
Q ss_pred ceeeeecchhhhccCCceeC
Q 034189 83 NYLSGRIPTFIAKWVNLYAL 102 (102)
Q Consensus 83 n~~~~~~~~~~~~l~~L~~l 102 (102)
|.+.+..+..++++++|+.|
T Consensus 107 n~l~~~~~~~~~~l~~L~~L 126 (680)
T 1ziw_A 107 NSIQKIKNNPFVKQKNLITL 126 (680)
T ss_dssp SCCCCCCSCTTTTCTTCCEE
T ss_pred CccCccChhHccccCCCCEE
Confidence 99986666788888888764
No 77
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.52 E-value=1.5e-14 Score=96.80 Aligned_cols=61 Identities=18% Similarity=0.246 Sum_probs=43.4
Q ss_pred CChhhcCCCCCcEEEcccceece-----------------ecChhhc--CCCCCcEEEcccceeeeecchhhhccCCcee
Q 034189 41 LPPELGKLSNLQKLRLQSNNLRG-----------------DLPKDYE--NLKNLTIFGIAGNYLSGRIPTFIAKWVNLYA 101 (102)
Q Consensus 41 ~~~~~~~~~~L~~l~l~~n~~~~-----------------~~p~~~~--~~~~L~~l~l~~n~~~~~~~~~~~~l~~L~~ 101 (102)
+|..+..+++|+.+++++|++.+ .+|..+. .+++|++|++++|.+.+.+|..++++++|+.
T Consensus 440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~ 519 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQS 519 (876)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCE
T ss_pred hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCE
Confidence 55666777777777777777775 2666655 7777777777777777777777777777665
No 78
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.52 E-value=4.9e-14 Score=88.00 Aligned_cols=97 Identities=26% Similarity=0.252 Sum_probs=67.4
Q ss_pred eEEEEecCCcceecCChhhcCCCCCCEEEeecccceecCChhhcCCCCCcEEEcccceeceecChhhcCCCCCcEEEccc
Q 034189 3 SCRSNLGQNLLTGKIPPSLGRLSSLQTLSLLENGLNGTLPPELGKLSNLQKLRLQSNNLRGDLPKDYENLKNLTIFGIAG 82 (102)
Q Consensus 3 ~~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~p~~~~~~~~L~~l~l~~ 82 (102)
.++|++++|.++ .+|. +..+++|+.+++++|.+++..+..+..+++|+.+++++|++....+..+..+++|+.|++++
T Consensus 187 L~~L~L~~n~l~-~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 264 (440)
T 3zyj_A 187 LRYLNLAMCNLR-EIPN-LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAH 264 (440)
T ss_dssp CCEEECTTSCCS-SCCC-CTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTT
T ss_pred cCeecCCCCcCc-cccc-cCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCC
Confidence 346677777766 4443 56677777777777777755566677777777777777777766666677777788888888
Q ss_pred ceeeeecchhhhccCCcee
Q 034189 83 NYLSGRIPTFIAKWVNLYA 101 (102)
Q Consensus 83 n~~~~~~~~~~~~l~~L~~ 101 (102)
|.++...+..+..+++|+.
T Consensus 265 N~l~~~~~~~~~~l~~L~~ 283 (440)
T 3zyj_A 265 NNLTLLPHDLFTPLHHLER 283 (440)
T ss_dssp SCCCCCCTTTTSSCTTCCE
T ss_pred CCCCccChhHhccccCCCE
Confidence 8777555555666666654
No 79
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.52 E-value=8.3e-15 Score=87.99 Aligned_cols=98 Identities=18% Similarity=0.183 Sum_probs=63.4
Q ss_pred eEEEEecCCcceecCChhh--cCCCCCCEEEeecccceecCChhhcCC-----CCCcEEEcccceeceecChhhcCCCCC
Q 034189 3 SCRSNLGQNLLTGKIPPSL--GRLSSLQTLSLLENGLNGTLPPELGKL-----SNLQKLRLQSNNLRGDLPKDYENLKNL 75 (102)
Q Consensus 3 ~~~L~l~~n~~~~~~~~~~--~~l~~L~~l~l~~n~~~~~~~~~~~~~-----~~L~~l~l~~n~~~~~~p~~~~~~~~L 75 (102)
.++|++++|.+++..|..+ ..+++|+.+++++|.+++. |..+..+ ++|+++++++|++.+..|..+..+++|
T Consensus 97 L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L 175 (312)
T 1wwl_A 97 LQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPAL 175 (312)
T ss_dssp CCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSC
T ss_pred ccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCC
Confidence 4567777777776666654 6777777777777777744 5545444 677777777777775545666777777
Q ss_pred cEEEcccceeeee--cchhh--hccCCcee
Q 034189 76 TIFGIAGNYLSGR--IPTFI--AKWVNLYA 101 (102)
Q Consensus 76 ~~l~l~~n~~~~~--~~~~~--~~l~~L~~ 101 (102)
+++++++|.+.+. .+..+ ..+++|+.
T Consensus 176 ~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~ 205 (312)
T 1wwl_A 176 STLDLSDNPELGERGLISALCPLKFPTLQV 205 (312)
T ss_dssp CEEECCSCTTCHHHHHHHHSCTTSCTTCCE
T ss_pred CEEECCCCCcCcchHHHHHHHhccCCCCCE
Confidence 7777777765543 22222 55555543
No 80
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.52 E-value=6.4e-14 Score=84.62 Aligned_cols=96 Identities=20% Similarity=0.243 Sum_probs=68.0
Q ss_pred eEEEEecCCcceecCChhhcCCCCCCEEEeecccceecCChhhcCCCCCcEEEcccceeceecChhhcCCCCCcEEEccc
Q 034189 3 SCRSNLGQNLLTGKIPPSLGRLSSLQTLSLLENGLNGTLPPELGKLSNLQKLRLQSNNLRGDLPKDYENLKNLTIFGIAG 82 (102)
Q Consensus 3 ~~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~p~~~~~~~~L~~l~l~~ 82 (102)
.+.|++++|.+++..+..+..+++|+.+++++|.+++..|..+..+++|+++++++|++. .+|..+. ++|+++++++
T Consensus 56 l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~--~~L~~L~l~~ 132 (332)
T 2ft3_A 56 TTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLP--SSLVELRIHD 132 (332)
T ss_dssp CCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCC-SCCSSCC--TTCCEEECCS
T ss_pred CeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCC-ccCcccc--ccCCEEECCC
Confidence 356788888888655667788888888888888888665667778888888888888777 5554432 6677777777
Q ss_pred ceeeeecchhhhccCCcee
Q 034189 83 NYLSGRIPTFIAKWVNLYA 101 (102)
Q Consensus 83 n~~~~~~~~~~~~l~~L~~ 101 (102)
|.+....+..+..+++|+.
T Consensus 133 n~i~~~~~~~~~~l~~L~~ 151 (332)
T 2ft3_A 133 NRIRKVPKGVFSGLRNMNC 151 (332)
T ss_dssp SCCCCCCSGGGSSCSSCCE
T ss_pred CccCccCHhHhCCCccCCE
Confidence 7776444445666666654
No 81
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.52 E-value=3.6e-14 Score=91.26 Aligned_cols=85 Identities=18% Similarity=0.044 Sum_probs=55.5
Q ss_pred eEEEEecCCcceecCChhhcCCCCCCEEEeecccceecCChhhcCCCCCcEEEcccceeceecChhhcCCCCCcEEEccc
Q 034189 3 SCRSNLGQNLLTGKIPPSLGRLSSLQTLSLLENGLNGTLPPELGKLSNLQKLRLQSNNLRGDLPKDYENLKNLTIFGIAG 82 (102)
Q Consensus 3 ~~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~p~~~~~~~~L~~l~l~~ 82 (102)
.++|++++|.+.+..|..|..+++|+.+++++|.+++..|..+..+++|+++++++|++....|..+..+++|+++++++
T Consensus 59 L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~ 138 (606)
T 3t6q_A 59 LTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGS 138 (606)
T ss_dssp CSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCS
T ss_pred ceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCC
Confidence 35677777777766666677777777777777777655566666677777777777666643344455566666666666
Q ss_pred ceeee
Q 034189 83 NYLSG 87 (102)
Q Consensus 83 n~~~~ 87 (102)
|.+.+
T Consensus 139 n~l~~ 143 (606)
T 3t6q_A 139 NHISS 143 (606)
T ss_dssp SCCCC
T ss_pred Ccccc
Confidence 65553
No 82
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.51 E-value=4.7e-14 Score=85.84 Aligned_cols=97 Identities=24% Similarity=0.184 Sum_probs=65.9
Q ss_pred eEEEEecCCcceecCChhhcCCCCCCEEEeecccceecCChh-hcCCCCCcEEEcccceeceecCh--hhcCCCCCcEEE
Q 034189 3 SCRSNLGQNLLTGKIPPSLGRLSSLQTLSLLENGLNGTLPPE-LGKLSNLQKLRLQSNNLRGDLPK--DYENLKNLTIFG 79 (102)
Q Consensus 3 ~~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~-~~~~~~L~~l~l~~n~~~~~~p~--~~~~~~~L~~l~ 79 (102)
.++|++++|.+++..+..+..+++|+.+++++|.++ .++.. +..+++|+++++++|++. .+|. .+..+++|++++
T Consensus 78 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~~L~~L~ 155 (353)
T 2z80_A 78 LQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS-NLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILR 155 (353)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS-SCCHHHHTTCTTCSEEECTTCCCS-SSCSSCSCTTCTTCCEEE
T ss_pred CCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCC-cCCHhHhCCCccCCEEECCCCCCc-ccCchhhhccCCCCcEEE
Confidence 456778888777666666777788888888888777 44443 677777888888777777 4443 566677777777
Q ss_pred cccc-eeeeecchhhhccCCcee
Q 034189 80 IAGN-YLSGRIPTFIAKWVNLYA 101 (102)
Q Consensus 80 l~~n-~~~~~~~~~~~~l~~L~~ 101 (102)
+++| .+....+..+.++++|+.
T Consensus 156 l~~n~~~~~~~~~~~~~l~~L~~ 178 (353)
T 2z80_A 156 VGNMDTFTKIQRKDFAGLTFLEE 178 (353)
T ss_dssp EEESSSCCEECTTTTTTCCEEEE
T ss_pred CCCCccccccCHHHccCCCCCCE
Confidence 7776 355444455666666554
No 83
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.51 E-value=9.2e-14 Score=83.84 Aligned_cols=94 Identities=22% Similarity=0.320 Sum_probs=58.1
Q ss_pred EEEEecCCcceecCChhhcCCCCCCEEEeecccceecCChhhcCCCCCcEEEcccceeceecChhhcCCCCCcEEEcccc
Q 034189 4 CRSNLGQNLLTGKIPPSLGRLSSLQTLSLLENGLNGTLPPELGKLSNLQKLRLQSNNLRGDLPKDYENLKNLTIFGIAGN 83 (102)
Q Consensus 4 ~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~p~~~~~~~~L~~l~l~~n 83 (102)
+.|++++|.+++..+..+..+++|+.+++++|.+++..|..+..+++|+.+++++|++. .+|..+. ++|+.+++++|
T Consensus 55 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~--~~L~~L~l~~n 131 (330)
T 1xku_A 55 ALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMP--KTLQELRVHEN 131 (330)
T ss_dssp CEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSCC--TTCCEEECCSS
T ss_pred eEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCC-ccChhhc--ccccEEECCCC
Confidence 56777888777554556777788888888888777555666777777777777777766 4443321 44555555555
Q ss_pred eeeeecchhhhccCCce
Q 034189 84 YLSGRIPTFIAKWVNLY 100 (102)
Q Consensus 84 ~~~~~~~~~~~~l~~L~ 100 (102)
.+.+..+..+.++++|+
T Consensus 132 ~l~~~~~~~~~~l~~L~ 148 (330)
T 1xku_A 132 EITKVRKSVFNGLNQMI 148 (330)
T ss_dssp CCCBBCHHHHTTCTTCC
T ss_pred cccccCHhHhcCCcccc
Confidence 55433333344444433
No 84
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.50 E-value=1.3e-13 Score=76.73 Aligned_cols=96 Identities=26% Similarity=0.273 Sum_probs=77.9
Q ss_pred EEEEecCCcceecCChhhcCCCCCCEEEeecccceecCChhhcCCCCCcEEEcccceeceecChhhcCCCCCcEEEcccc
Q 034189 4 CRSNLGQNLLTGKIPPSLGRLSSLQTLSLLENGLNGTLPPELGKLSNLQKLRLQSNNLRGDLPKDYENLKNLTIFGIAGN 83 (102)
Q Consensus 4 ~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~p~~~~~~~~L~~l~l~~n 83 (102)
+.+++++++++ .+|..+ .++++.+++++|.+++..+..+..+++|+++++++|++....+..+..+++|+++++++|
T Consensus 10 ~~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 86 (177)
T 2o6r_A 10 TEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN 86 (177)
T ss_dssp TEEECCSSCCS-SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCCc-cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence 36888999988 677554 378999999999999444445788999999999999999554556789999999999999
Q ss_pred eeeeecchhhhccCCceeC
Q 034189 84 YLSGRIPTFIAKWVNLYAL 102 (102)
Q Consensus 84 ~~~~~~~~~~~~l~~L~~l 102 (102)
.+++..+..+..+++|+.|
T Consensus 87 ~l~~~~~~~~~~l~~L~~L 105 (177)
T 2o6r_A 87 KLQSLPNGVFDKLTQLKEL 105 (177)
T ss_dssp CCCCCCTTTTTTCTTCCEE
T ss_pred CccccCHHHhhCCcccCEE
Confidence 9996666667888887753
No 85
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.50 E-value=8.7e-15 Score=96.33 Aligned_cols=90 Identities=33% Similarity=0.514 Sum_probs=82.6
Q ss_pred eEEEEecCCcceecCChhhcCCCCCCEEEeecccceecCChhhcCCCCCcEEEcccceeceecChhhcCCCCCcEEEccc
Q 034189 3 SCRSNLGQNLLTGKIPPSLGRLSSLQTLSLLENGLNGTLPPELGKLSNLQKLRLQSNNLRGDLPKDYENLKNLTIFGIAG 82 (102)
Q Consensus 3 ~~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~p~~~~~~~~L~~l~l~~ 82 (102)
+++|++++|.++ .+|..+..+++|+.|++++|.++ .+|..+..+++|++|++++|.+. .+|..+..+++|++|++++
T Consensus 249 L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~ 325 (727)
T 4b8c_D 249 LTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEG 325 (727)
T ss_dssp CSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTT
T ss_pred CCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCC
Confidence 467899999999 89999999999999999999999 88999999999999999999998 7898899999999999999
Q ss_pred ceeeeecchhhhc
Q 034189 83 NYLSGRIPTFIAK 95 (102)
Q Consensus 83 n~~~~~~~~~~~~ 95 (102)
|.+++.+|..+..
T Consensus 326 N~l~~~~p~~~~~ 338 (727)
T 4b8c_D 326 NPLEKQFLKILTE 338 (727)
T ss_dssp SCCCSHHHHHHHH
T ss_pred CccCCCChHHHhh
Confidence 9999887776643
No 86
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.50 E-value=4.8e-14 Score=89.74 Aligned_cols=99 Identities=23% Similarity=0.185 Sum_probs=71.1
Q ss_pred eEEEEecCCcceecCChhhcCCCCCCEEEeecccceecCChhhcCCCCCcEEEcccceece-ecChhhcCCCCCcEEEcc
Q 034189 3 SCRSNLGQNLLTGKIPPSLGRLSSLQTLSLLENGLNGTLPPELGKLSNLQKLRLQSNNLRG-DLPKDYENLKNLTIFGIA 81 (102)
Q Consensus 3 ~~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~-~~p~~~~~~~~L~~l~l~ 81 (102)
.++|++++|.+++..|..+..+++|+.+++++|.+++..+..+..+++|+++++++|++.+ ..|..+..+++|++++++
T Consensus 52 L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~ 131 (549)
T 2z81_A 52 LQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIG 131 (549)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEE
T ss_pred ccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECC
Confidence 4678888888886666778888888888888888885444457888888888888888774 235567777778888887
Q ss_pred cceeeeecc-hhhhccCCcee
Q 034189 82 GNYLSGRIP-TFIAKWVNLYA 101 (102)
Q Consensus 82 ~n~~~~~~~-~~~~~l~~L~~ 101 (102)
+|...+.++ ..+.++++|+.
T Consensus 132 ~n~~~~~~~~~~~~~l~~L~~ 152 (549)
T 2z81_A 132 NVETFSEIRRIDFAGLTSLNE 152 (549)
T ss_dssp ESSSCCEECTTTTTTCCEEEE
T ss_pred CCccccccCHhhhhcccccCe
Confidence 776433444 45666666654
No 87
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.49 E-value=1.1e-13 Score=80.18 Aligned_cols=96 Identities=19% Similarity=0.210 Sum_probs=69.8
Q ss_pred eEEEEecCCc-ceecCChhhcCCCCCCEEEeec-ccceecCChhhcCCCCCcEEEcccceeceecChhhcCCCCCc---E
Q 034189 3 SCRSNLGQNL-LTGKIPPSLGRLSSLQTLSLLE-NGLNGTLPPELGKLSNLQKLRLQSNNLRGDLPKDYENLKNLT---I 77 (102)
Q Consensus 3 ~~~L~l~~n~-~~~~~~~~~~~l~~L~~l~l~~-n~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~p~~~~~~~~L~---~ 77 (102)
.++|++++|. ++...+..|..+++|+.+++++ |.++...+..+..+++|+.+++++|++. .+|. +..+++++ +
T Consensus 57 L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~-~lp~-~~~l~~L~~L~~ 134 (239)
T 2xwt_C 57 ISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLK-MFPD-LTKVYSTDIFFI 134 (239)
T ss_dssp CCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCC-SCCC-CTTCCBCCSEEE
T ss_pred CcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCc-cccc-cccccccccccE
Confidence 4678888886 7755555788888888888887 8888444456778888888888888877 4565 66667776 7
Q ss_pred EEcccc-eeeeecchhhhccCCce
Q 034189 78 FGIAGN-YLSGRIPTFIAKWVNLY 100 (102)
Q Consensus 78 l~l~~n-~~~~~~~~~~~~l~~L~ 100 (102)
+++++| .+....+..|..+++|+
T Consensus 135 L~l~~N~~l~~i~~~~~~~l~~L~ 158 (239)
T 2xwt_C 135 LEITDNPYMTSIPVNAFQGLCNET 158 (239)
T ss_dssp EEEESCTTCCEECTTTTTTTBSSE
T ss_pred EECCCCcchhhcCcccccchhcce
Confidence 888777 77744445567777665
No 88
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.49 E-value=1.8e-13 Score=85.66 Aligned_cols=99 Identities=21% Similarity=0.168 Sum_probs=72.5
Q ss_pred eEEEEecCCcceecCChhhcCCCCCCEEEeecccceecCChhhcCCCCCcEEEcccceeceecChhhcCCCCCcEEEccc
Q 034189 3 SCRSNLGQNLLTGKIPPSLGRLSSLQTLSLLENGLNGTLPPELGKLSNLQKLRLQSNNLRGDLPKDYENLKNLTIFGIAG 82 (102)
Q Consensus 3 ~~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~p~~~~~~~~L~~l~l~~ 82 (102)
.++|++++|.+++..+..|..+++|+.|++++|.++...+..+..+++|+.+++++|++....+..+..+++|+.|++++
T Consensus 101 L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~ 180 (452)
T 3zyi_A 101 LEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGE 180 (452)
T ss_dssp CCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCC
T ss_pred CCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCC
Confidence 46789999999877777888899999999999998844444577888999999999988854445677777777777776
Q ss_pred c-eeeeecchhhhccCCcee
Q 034189 83 N-YLSGRIPTFIAKWVNLYA 101 (102)
Q Consensus 83 n-~~~~~~~~~~~~l~~L~~ 101 (102)
| .+....+..+..+++|+.
T Consensus 181 ~~~l~~i~~~~~~~l~~L~~ 200 (452)
T 3zyi_A 181 LKKLEYISEGAFEGLFNLKY 200 (452)
T ss_dssp CTTCCEECTTTTTTCTTCCE
T ss_pred CCCccccChhhccCCCCCCE
Confidence 3 444222334566666554
No 89
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.49 E-value=1.8e-13 Score=82.52 Aligned_cols=84 Identities=24% Similarity=0.285 Sum_probs=50.4
Q ss_pred EEEEecCCcceecCChhhcCCCCCCEEEeecccceecCChhhcCCCCCcEEEcccceeceecChhhcCCCCCcEEEcccc
Q 034189 4 CRSNLGQNLLTGKIPPSLGRLSSLQTLSLLENGLNGTLPPELGKLSNLQKLRLQSNNLRGDLPKDYENLKNLTIFGIAGN 83 (102)
Q Consensus 4 ~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~p~~~~~~~~L~~l~l~~n 83 (102)
++|++++|.+++..+..+..+++|+.+++++|.+++..+..+..+++|+.+++++|++. .+|..+..+++|+++++++|
T Consensus 195 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N 273 (330)
T 1xku_A 195 TELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNN 273 (330)
T ss_dssp SEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSS
T ss_pred CEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCC
Confidence 45566666666544555666666666666666666444445556666666666666666 55555666666666666666
Q ss_pred eeeee
Q 034189 84 YLSGR 88 (102)
Q Consensus 84 ~~~~~ 88 (102)
.+++.
T Consensus 274 ~i~~~ 278 (330)
T 1xku_A 274 NISAI 278 (330)
T ss_dssp CCCCC
T ss_pred cCCcc
Confidence 66633
No 90
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.48 E-value=1.9e-14 Score=96.28 Aligned_cols=98 Identities=24% Similarity=0.266 Sum_probs=75.6
Q ss_pred eEEEEecCCccee-----------------cCChhhc--CCCCCCEEEeecccceecCChhhcCCCCCcEEEcccce-ec
Q 034189 3 SCRSNLGQNLLTG-----------------KIPPSLG--RLSSLQTLSLLENGLNGTLPPELGKLSNLQKLRLQSNN-LR 62 (102)
Q Consensus 3 ~~~L~l~~n~~~~-----------------~~~~~~~--~l~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~-~~ 62 (102)
+++|++++|.+++ .+|..+. .+++|+.+++++|.+.+.+|..+..+++|+.+++++|+ ++
T Consensus 450 L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~ls 529 (876)
T 4ecn_A 450 LQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGIS 529 (876)
T ss_dssp CCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSC
T ss_pred CCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcc
Confidence 4678888888886 2777766 88888888888888877888888888888888888887 77
Q ss_pred e-ecChhhcCC-------CCCcEEEcccceeeeecch--hhhccCCcee
Q 034189 63 G-DLPKDYENL-------KNLTIFGIAGNYLSGRIPT--FIAKWVNLYA 101 (102)
Q Consensus 63 ~-~~p~~~~~~-------~~L~~l~l~~n~~~~~~~~--~~~~l~~L~~ 101 (102)
+ .+|..+..+ ++|++|++++|.+. .+|. .++++++|+.
T Consensus 530 g~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~ 577 (876)
T 4ecn_A 530 AAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGL 577 (876)
T ss_dssp HHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCE
T ss_pred cccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCE
Confidence 5 566655444 38888888888888 7777 7777777765
No 91
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.48 E-value=1.1e-13 Score=85.17 Aligned_cols=100 Identities=17% Similarity=0.130 Sum_probs=82.8
Q ss_pred eEEEEecCCcceecCChhhcCCCCCCEEEeecccceecCChhhcCCCCCcEEEcccceeceecChhhcCCCCCcEEEccc
Q 034189 3 SCRSNLGQNLLTGKIPPSLGRLSSLQTLSLLENGLNGTLPPELGKLSNLQKLRLQSNNLRGDLPKDYENLKNLTIFGIAG 82 (102)
Q Consensus 3 ~~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~p~~~~~~~~L~~l~l~~ 82 (102)
.+.+++++|.++...+..+..+++|+.+++++|.+++..+..+..+++|+.+++++|++....|..+..+++|+++++++
T Consensus 47 l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 126 (390)
T 3o6n_A 47 QKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLER 126 (390)
T ss_dssp CSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred ceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCC
Confidence 35789999999844444578899999999999999966666789999999999999999966677789999999999999
Q ss_pred ceeeeecchhhhccCCceeC
Q 034189 83 NYLSGRIPTFIAKWVNLYAL 102 (102)
Q Consensus 83 n~~~~~~~~~~~~l~~L~~l 102 (102)
|.+....+..+..+++|+.|
T Consensus 127 n~l~~l~~~~~~~l~~L~~L 146 (390)
T 3o6n_A 127 NDLSSLPRGIFHNTPKLTTL 146 (390)
T ss_dssp SCCCCCCTTTTTTCTTCCEE
T ss_pred CccCcCCHHHhcCCCCCcEE
Confidence 99994433446788888753
No 92
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.47 E-value=1.8e-13 Score=91.17 Aligned_cols=100 Identities=19% Similarity=0.157 Sum_probs=82.0
Q ss_pred eEEEEecCCcceecCChhhcCCCCCCEEEeecccceecCChhhcCCCCCcEEEcccceeceecChhhcCCCCCcEEEccc
Q 034189 3 SCRSNLGQNLLTGKIPPSLGRLSSLQTLSLLENGLNGTLPPELGKLSNLQKLRLQSNNLRGDLPKDYENLKNLTIFGIAG 82 (102)
Q Consensus 3 ~~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~p~~~~~~~~L~~l~l~~ 82 (102)
.++|++++|.+.+..+..+..+++|+.+++++|.+++..+..+..+++|+.+++++|++....|..+..+++|+.+++++
T Consensus 268 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~ 347 (844)
T 3j0a_A 268 VRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQK 347 (844)
T ss_dssp CCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCS
T ss_pred ccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCC
Confidence 46788889988877777888899999999999998876677788888999999999988866677888888999999998
Q ss_pred ceeeeecchhhhccCCceeC
Q 034189 83 NYLSGRIPTFIAKWVNLYAL 102 (102)
Q Consensus 83 n~~~~~~~~~~~~l~~L~~l 102 (102)
|.+....+..+..+++|+.|
T Consensus 348 N~i~~~~~~~~~~l~~L~~L 367 (844)
T 3j0a_A 348 NHIAIIQDQTFKFLEKLQTL 367 (844)
T ss_dssp CCCCCCCSSCSCSCCCCCEE
T ss_pred CCCCccChhhhcCCCCCCEE
Confidence 88886656667777777653
No 93
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.47 E-value=1.4e-13 Score=88.79 Aligned_cols=99 Identities=17% Similarity=0.130 Sum_probs=84.2
Q ss_pred EEEEecCCcceecCChhhcCCCCCCEEEeecccceecCChhhcCCCCCcEEEcccceeceecChhhcCCCCCcEEEcccc
Q 034189 4 CRSNLGQNLLTGKIPPSLGRLSSLQTLSLLENGLNGTLPPELGKLSNLQKLRLQSNNLRGDLPKDYENLKNLTIFGIAGN 83 (102)
Q Consensus 4 ~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~p~~~~~~~~L~~l~l~~n 83 (102)
+.+++++|.+....+..+..+++|+.+++++|.+++..+..+..+++|+.+++++|.+.+..|..+..+++|++|++++|
T Consensus 54 ~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 133 (597)
T 3oja_B 54 KIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERN 133 (597)
T ss_dssp SEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred eEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCC
Confidence 56889999998554556888999999999999999766668999999999999999999766777899999999999999
Q ss_pred eeeeecchhhhccCCceeC
Q 034189 84 YLSGRIPTFIAKWVNLYAL 102 (102)
Q Consensus 84 ~~~~~~~~~~~~l~~L~~l 102 (102)
.+....+..|..+++|+.|
T Consensus 134 ~l~~l~~~~~~~l~~L~~L 152 (597)
T 3oja_B 134 DLSSLPRGIFHNTPKLTTL 152 (597)
T ss_dssp CCCCCCTTTTTTCTTCCEE
T ss_pred CCCCCCHHHhccCCCCCEE
Confidence 9995544557888888754
No 94
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.47 E-value=1.4e-13 Score=87.31 Aligned_cols=93 Identities=19% Similarity=0.203 Sum_probs=80.6
Q ss_pred eEEEEecCCcceecCChhhcCCCCCCEEEeecccceecCChhhcCCCCCcEEEcccceeceecChhhcCCCCCcEEEccc
Q 034189 3 SCRSNLGQNLLTGKIPPSLGRLSSLQTLSLLENGLNGTLPPELGKLSNLQKLRLQSNNLRGDLPKDYENLKNLTIFGIAG 82 (102)
Q Consensus 3 ~~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~p~~~~~~~~L~~l~l~~ 82 (102)
.+.+++++|.++ .+|..+. ++++.+++++|.+++..+..+..+++|+++++++|++.+..|..+..+++|++|++++
T Consensus 2 ~~~l~ls~n~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 78 (520)
T 2z7x_B 2 EFLVDRSKNGLI-HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSH 78 (520)
T ss_dssp CCEEECTTSCCS-SCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCS
T ss_pred cceEecCCCCcc-ccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCC
Confidence 367999999999 7887665 8999999999999965556799999999999999999977788999999999999999
Q ss_pred ceeeeecchhhhccCCcee
Q 034189 83 NYLSGRIPTFIAKWVNLYA 101 (102)
Q Consensus 83 n~~~~~~~~~~~~l~~L~~ 101 (102)
|.++ .+|.. .+++|+.
T Consensus 79 N~l~-~lp~~--~l~~L~~ 94 (520)
T 2z7x_B 79 NKLV-KISCH--PTVNLKH 94 (520)
T ss_dssp SCCC-EEECC--CCCCCSE
T ss_pred Ccee-ecCcc--ccCCccE
Confidence 9999 66654 6677665
No 95
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.44 E-value=4.6e-13 Score=81.26 Aligned_cols=84 Identities=23% Similarity=0.220 Sum_probs=72.0
Q ss_pred eEEEEecC-CcceecCChhhcCCCCCCEEEeecccceecCChhhcCCCCCcEEEcccceeceecChhhcCCCCCcEEEcc
Q 034189 3 SCRSNLGQ-NLLTGKIPPSLGRLSSLQTLSLLENGLNGTLPPELGKLSNLQKLRLQSNNLRGDLPKDYENLKNLTIFGIA 81 (102)
Q Consensus 3 ~~~L~l~~-n~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~p~~~~~~~~L~~l~l~ 81 (102)
+++|++++ |.+++..+..|..+.+|+.|++++|.+++..|..+..+++|+.|++++|++....+..+..+. |+.|++.
T Consensus 33 L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~ 111 (347)
T 2ifg_A 33 LTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLS 111 (347)
T ss_dssp CSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEECC
T ss_pred eeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEEEee
Confidence 57899996 999977677899999999999999999977777889999999999999999944444555555 9999999
Q ss_pred cceeee
Q 034189 82 GNYLSG 87 (102)
Q Consensus 82 ~n~~~~ 87 (102)
+|.+.-
T Consensus 112 ~N~~~c 117 (347)
T 2ifg_A 112 GNPLHC 117 (347)
T ss_dssp SSCCCC
T ss_pred CCCccC
Confidence 998863
No 96
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.44 E-value=2.8e-14 Score=85.68 Aligned_cols=98 Identities=22% Similarity=0.233 Sum_probs=82.3
Q ss_pred EEEEecCCcce-ecCChhhc-------CCCCCCEEEeecccceecCChhh--cCCCCCcEEEcccceeceecChhhcCC-
Q 034189 4 CRSNLGQNLLT-GKIPPSLG-------RLSSLQTLSLLENGLNGTLPPEL--GKLSNLQKLRLQSNNLRGDLPKDYENL- 72 (102)
Q Consensus 4 ~~L~l~~n~~~-~~~~~~~~-------~l~~L~~l~l~~n~~~~~~~~~~--~~~~~L~~l~l~~n~~~~~~p~~~~~~- 72 (102)
+.|++++|.+. ..++..+. .+++|+.+++++|.+++..|..+ ..+++|+.+++++|++.+. |..+..+
T Consensus 66 ~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~ 144 (312)
T 1wwl_A 66 KSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQ 144 (312)
T ss_dssp HHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHH
T ss_pred hhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHH
Confidence 35678888884 45666555 79999999999999998888875 8899999999999999955 7777766
Q ss_pred ----CCCcEEEcccceeeeecchhhhccCCceeC
Q 034189 73 ----KNLTIFGIAGNYLSGRIPTFIAKWVNLYAL 102 (102)
Q Consensus 73 ----~~L~~l~l~~n~~~~~~~~~~~~l~~L~~l 102 (102)
++|+++++++|.+.+..+..++.+++|+.|
T Consensus 145 ~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 178 (312)
T 1wwl_A 145 QWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTL 178 (312)
T ss_dssp TTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEE
T ss_pred HhhcCCCcEEEeeCCCCccchHHHhccCCCCCEE
Confidence 899999999999997777889999888764
No 97
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.44 E-value=3.6e-13 Score=81.03 Aligned_cols=94 Identities=20% Similarity=0.141 Sum_probs=51.6
Q ss_pred EEEEecCCcceecCChhh-cCCCCCCEEEeecccceecCChhhcCCCCCcEEEcccceeceecChhhcCCCCCcEEEccc
Q 034189 4 CRSNLGQNLLTGKIPPSL-GRLSSLQTLSLLENGLNGTLPPELGKLSNLQKLRLQSNNLRGDLPKDYENLKNLTIFGIAG 82 (102)
Q Consensus 4 ~~L~l~~n~~~~~~~~~~-~~l~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~p~~~~~~~~L~~l~l~~ 82 (102)
++|++++|.+++..+..+ ..+++|+.+++++|.+++. +. ...+++|+.+++++|++. ..|..+..+++|+.+++++
T Consensus 147 ~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~L~~ 223 (317)
T 3o53_A 147 QYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRN 223 (317)
T ss_dssp EEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCC-EECGGGGGGTTCSEEECTT
T ss_pred CEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-cc-ccccccCCEEECCCCcCC-cchhhhcccCcccEEECcC
Confidence 455555555554333333 2455555555555555522 22 223556666666666666 3444466666666666666
Q ss_pred ceeeeecchhhhccCCcee
Q 034189 83 NYLSGRIPTFIAKWVNLYA 101 (102)
Q Consensus 83 n~~~~~~~~~~~~l~~L~~ 101 (102)
|.++ .+|..+..+++|+.
T Consensus 224 N~l~-~l~~~~~~l~~L~~ 241 (317)
T 3o53_A 224 NKLV-LIEKALRFSQNLEH 241 (317)
T ss_dssp SCCC-EECTTCCCCTTCCE
T ss_pred Cccc-chhhHhhcCCCCCE
Confidence 6666 45555555555553
No 98
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.44 E-value=3.2e-13 Score=85.47 Aligned_cols=93 Identities=20% Similarity=0.143 Sum_probs=43.9
Q ss_pred EEEEecCCcceecCChhhc-CCCCCCEEEeecccceecCChhhcCCCCCcEEEcccceeceecChhhcCCCCCcEEEccc
Q 034189 4 CRSNLGQNLLTGKIPPSLG-RLSSLQTLSLLENGLNGTLPPELGKLSNLQKLRLQSNNLRGDLPKDYENLKNLTIFGIAG 82 (102)
Q Consensus 4 ~~L~l~~n~~~~~~~~~~~-~l~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~p~~~~~~~~L~~l~l~~ 82 (102)
++|++++|.+++..|..+. .+++|+.+++++|.+++. +. ...+++|+.+++++|++++ .|..+..+++|+.+++++
T Consensus 147 ~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~ 223 (487)
T 3oja_A 147 QYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRN 223 (487)
T ss_dssp EEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTT
T ss_pred CEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc-cc-cccCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecC
Confidence 3444444444433333332 344444444444444422 11 1234555555555555552 333355555666666666
Q ss_pred ceeeeecchhhhccCCce
Q 034189 83 NYLSGRIPTFIAKWVNLY 100 (102)
Q Consensus 83 n~~~~~~~~~~~~l~~L~ 100 (102)
|.++ .+|..+..+++|+
T Consensus 224 N~l~-~lp~~l~~l~~L~ 240 (487)
T 3oja_A 224 NKLV-LIEKALRFSQNLE 240 (487)
T ss_dssp SCCC-EECTTCCCCTTCC
T ss_pred CcCc-ccchhhccCCCCC
Confidence 6555 3454455544444
No 99
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.43 E-value=2.5e-13 Score=85.97 Aligned_cols=97 Identities=20% Similarity=0.091 Sum_probs=77.6
Q ss_pred eEEEEecCCcceecCChhhcCCCCCCEEEeecccceecCChhhc-CCCCCcEEEcccceeceecChhhcCCCCCcEEEcc
Q 034189 3 SCRSNLGQNLLTGKIPPSLGRLSSLQTLSLLENGLNGTLPPELG-KLSNLQKLRLQSNNLRGDLPKDYENLKNLTIFGIA 81 (102)
Q Consensus 3 ~~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~-~~~~L~~l~l~~n~~~~~~p~~~~~~~~L~~l~l~ 81 (102)
.++|++++|.+++..|..+..+++|+.+++++|.+++..|..+. .+++|+.+++++|.+++. |. ...+++|+.|+++
T Consensus 122 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~Ls 199 (487)
T 3oja_A 122 KKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLS 199 (487)
T ss_dssp CEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECC
T ss_pred CCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc-cc-cccCCCCCEEECC
Confidence 36788888988876677788899999999999999976676665 688999999999998854 32 3468899999999
Q ss_pred cceeeeecchhhhccCCceeC
Q 034189 82 GNYLSGRIPTFIAKWVNLYAL 102 (102)
Q Consensus 82 ~n~~~~~~~~~~~~l~~L~~l 102 (102)
+|.+++ +|..+..+++|+.|
T Consensus 200 ~N~l~~-~~~~~~~l~~L~~L 219 (487)
T 3oja_A 200 SNKLAF-MGPEFQSAAGVTWI 219 (487)
T ss_dssp SSCCCE-ECGGGGGGTTCSEE
T ss_pred CCCCCC-CCHhHcCCCCccEE
Confidence 999995 45558888877653
No 100
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.43 E-value=1.7e-13 Score=82.83 Aligned_cols=84 Identities=25% Similarity=0.258 Sum_probs=51.5
Q ss_pred EEEEecCCcceecCChhhcCCCCCCEEEeecccceecCChhhcCCCCCcEEEcccceeceecChhhcCCCCCcEEEcccc
Q 034189 4 CRSNLGQNLLTGKIPPSLGRLSSLQTLSLLENGLNGTLPPELGKLSNLQKLRLQSNNLRGDLPKDYENLKNLTIFGIAGN 83 (102)
Q Consensus 4 ~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~p~~~~~~~~L~~l~l~~n 83 (102)
++|++++|.+++..+..+..+++|+.+++++|.+++..+..+..+++|+.+++++|++. .+|..+..+++|+.+++++|
T Consensus 196 ~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N 274 (332)
T 2ft3_A 196 NELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTN 274 (332)
T ss_dssp SCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSS
T ss_pred CEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCC
Confidence 34566666666444455666666666666666666443445566666666666666666 55655666666666666666
Q ss_pred eeeee
Q 034189 84 YLSGR 88 (102)
Q Consensus 84 ~~~~~ 88 (102)
.++..
T Consensus 275 ~l~~~ 279 (332)
T 2ft3_A 275 NITKV 279 (332)
T ss_dssp CCCBC
T ss_pred CCCcc
Confidence 66643
No 101
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.43 E-value=6.9e-13 Score=84.93 Aligned_cols=93 Identities=25% Similarity=0.303 Sum_probs=80.0
Q ss_pred EEEEecCCcceecCChhhcCCCCCCEEEeecccceecCChhhcCCCCCcEEEcccceeceecChhhcCCCCCcEEEcccc
Q 034189 4 CRSNLGQNLLTGKIPPSLGRLSSLQTLSLLENGLNGTLPPELGKLSNLQKLRLQSNNLRGDLPKDYENLKNLTIFGIAGN 83 (102)
Q Consensus 4 ~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~p~~~~~~~~L~~l~l~~n 83 (102)
+.+++++|.++ .+|..+. ++++.+++++|.+++..+..+..+++|+++++++|++++..|..+..+++|++|++++|
T Consensus 34 ~~l~ls~~~L~-~ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 110 (562)
T 3a79_B 34 SMVDYSNRNLT-HVPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHN 110 (562)
T ss_dssp CEEECTTSCCC-SCCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTS
T ss_pred cEEEcCCCCCc-cCCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCC
Confidence 57999999999 6887654 89999999999999655568999999999999999999777888999999999999999
Q ss_pred eeeeecchhhhccCCceeC
Q 034189 84 YLSGRIPTFIAKWVNLYAL 102 (102)
Q Consensus 84 ~~~~~~~~~~~~l~~L~~l 102 (102)
.++ .+|.. .+++|+.|
T Consensus 111 ~l~-~lp~~--~l~~L~~L 126 (562)
T 3a79_B 111 RLQ-NISCC--PMASLRHL 126 (562)
T ss_dssp CCC-EECSC--CCTTCSEE
T ss_pred cCC-ccCcc--ccccCCEE
Confidence 999 66655 67777653
No 102
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.41 E-value=3.4e-13 Score=80.89 Aligned_cols=99 Identities=15% Similarity=0.078 Sum_probs=70.9
Q ss_pred eEEEEecCCcceecCChhh--cCCCCCCEEEeecccceecCC----hhhcCCCCCcEEEcccceeceecChhhcCCCCCc
Q 034189 3 SCRSNLGQNLLTGKIPPSL--GRLSSLQTLSLLENGLNGTLP----PELGKLSNLQKLRLQSNNLRGDLPKDYENLKNLT 76 (102)
Q Consensus 3 ~~~L~l~~n~~~~~~~~~~--~~l~~L~~l~l~~n~~~~~~~----~~~~~~~~L~~l~l~~n~~~~~~p~~~~~~~~L~ 76 (102)
.++|++++|.+.+..|..+ ..+++|+.+++++|.+++..+ ..+..+++|+.+++++|++....+..+..+++|+
T Consensus 93 L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 172 (310)
T 4glp_A 93 LKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALT 172 (310)
T ss_dssp CCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCC
T ss_pred eeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCC
Confidence 4678889998887777776 778888888888888885433 2344677888888888888755566777888888
Q ss_pred EEEcccceeeee--cc--hhhhccCCcee
Q 034189 77 IFGIAGNYLSGR--IP--TFIAKWVNLYA 101 (102)
Q Consensus 77 ~l~l~~n~~~~~--~~--~~~~~l~~L~~ 101 (102)
+|++++|.+.+. ++ ..+..+++|+.
T Consensus 173 ~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~ 201 (310)
T 4glp_A 173 SLDLSDNPGLGERGLMAALCPHKFPAIQN 201 (310)
T ss_dssp EEECCSCTTCHHHHHHTTSCTTSSCCCCS
T ss_pred EEECCCCCCccchhhhHHHhhhcCCCCCE
Confidence 888888876532 11 22345566554
No 103
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.39 E-value=7.5e-13 Score=79.64 Aligned_cols=97 Identities=20% Similarity=0.098 Sum_probs=75.7
Q ss_pred eEEEEecCCcceecCChhhcCCCCCCEEEeecccceecCChhh-cCCCCCcEEEcccceeceecChhhcCCCCCcEEEcc
Q 034189 3 SCRSNLGQNLLTGKIPPSLGRLSSLQTLSLLENGLNGTLPPEL-GKLSNLQKLRLQSNNLRGDLPKDYENLKNLTIFGIA 81 (102)
Q Consensus 3 ~~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~-~~~~~L~~l~l~~n~~~~~~p~~~~~~~~L~~l~l~ 81 (102)
.++|++++|.+++..+..+..+++|+.+++++|.+++..+..+ ..+++|+.+++++|+++.. +. ...+++|+.++++
T Consensus 122 L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~-~~~l~~L~~L~Ls 199 (317)
T 3o53_A 122 KKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLS 199 (317)
T ss_dssp CEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECC
T ss_pred CCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-cc-ccccccCCEEECC
Confidence 4678888888886556678888999999999999986555555 4688999999999998844 33 3358899999999
Q ss_pred cceeeeecchhhhccCCceeC
Q 034189 82 GNYLSGRIPTFIAKWVNLYAL 102 (102)
Q Consensus 82 ~n~~~~~~~~~~~~l~~L~~l 102 (102)
+|.++ .+|..+..+++|+.|
T Consensus 200 ~N~l~-~l~~~~~~l~~L~~L 219 (317)
T 3o53_A 200 SNKLA-FMGPEFQSAAGVTWI 219 (317)
T ss_dssp SSCCC-EECGGGGGGTTCSEE
T ss_pred CCcCC-cchhhhcccCcccEE
Confidence 99999 455568888887753
No 104
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.37 E-value=3.3e-12 Score=75.23 Aligned_cols=88 Identities=31% Similarity=0.398 Sum_probs=40.0
Q ss_pred EEEEecCCcceecCChhhcCCCCCCEEEeecccceecCChhhcCCCCCcEEEcccceeceecChhhcCCCCCcEEEcccc
Q 034189 4 CRSNLGQNLLTGKIPPSLGRLSSLQTLSLLENGLNGTLPPELGKLSNLQKLRLQSNNLRGDLPKDYENLKNLTIFGIAGN 83 (102)
Q Consensus 4 ~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~p~~~~~~~~L~~l~l~~n 83 (102)
++|++++|.++ .++. +..+++|+.+++++|.++ .++.. .. ++|+.+++++|++.+ . ..+..+++|+.+++++|
T Consensus 66 ~~L~L~~N~i~-~~~~-l~~l~~L~~L~L~~N~l~-~l~~~-~~-~~L~~L~L~~N~l~~-~-~~l~~l~~L~~L~Ls~N 138 (263)
T 1xeu_A 66 KELHLSHNQIS-DLSP-LKDLTKLEELSVNRNRLK-NLNGI-PS-ACLSRLFLDNNELRD-T-DSLIHLKNLEILSIRNN 138 (263)
T ss_dssp CEEECCSSCCC-CCGG-GTTCSSCCEEECCSSCCS-CCTTC-CC-SSCCEEECCSSCCSB-S-GGGTTCTTCCEEECTTS
T ss_pred CEEECCCCccC-CChh-hccCCCCCEEECCCCccC-CcCcc-cc-CcccEEEccCCccCC-C-hhhcCcccccEEECCCC
Confidence 34555555555 2333 455555555555555554 22221 11 344444444444442 2 23445555555555555
Q ss_pred eeeeecchhhhccCCce
Q 034189 84 YLSGRIPTFIAKWVNLY 100 (102)
Q Consensus 84 ~~~~~~~~~~~~l~~L~ 100 (102)
.+++ ++ .+..+++|+
T Consensus 139 ~i~~-~~-~l~~l~~L~ 153 (263)
T 1xeu_A 139 KLKS-IV-MLGFLSKLE 153 (263)
T ss_dssp CCCB-CG-GGGGCTTCC
T ss_pred cCCC-Ch-HHccCCCCC
Confidence 5552 22 344444444
No 105
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.37 E-value=2.2e-12 Score=78.13 Aligned_cols=90 Identities=24% Similarity=0.335 Sum_probs=41.3
Q ss_pred EEEecCCcceecCChhhcCCCCCCEEEeecccceecCChhhcCCCCCcEEEcccceeceecChhhcCCCCCcEEEcccce
Q 034189 5 RSNLGQNLLTGKIPPSLGRLSSLQTLSLLENGLNGTLPPELGKLSNLQKLRLQSNNLRGDLPKDYENLKNLTIFGIAGNY 84 (102)
Q Consensus 5 ~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~p~~~~~~~~L~~l~l~~n~ 84 (102)
+|++++|.++. + +.+..+++|+.+++++|.+++ . +.+..+++|+.+++++|++.+..|..+..+++|+.+++++|.
T Consensus 247 ~L~l~~n~l~~-~-~~~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~ 322 (347)
T 4fmz_A 247 WLEIGTNQISD-I-NAVKDLTKLKMLNVGSNQISD-I-SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNH 322 (347)
T ss_dssp EEECCSSCCCC-C-GGGTTCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSS
T ss_pred EEECCCCccCC-C-hhHhcCCCcCEEEccCCccCC-C-hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCc
Confidence 34444444442 2 233444445555555554442 2 224444555555555555544444444555555555555555
Q ss_pred eeeecchhhhccCCce
Q 034189 85 LSGRIPTFIAKWVNLY 100 (102)
Q Consensus 85 ~~~~~~~~~~~l~~L~ 100 (102)
+++..| +..+++|+
T Consensus 323 l~~~~~--~~~l~~L~ 336 (347)
T 4fmz_A 323 ITDIRP--LASLSKMD 336 (347)
T ss_dssp CCCCGG--GGGCTTCS
T ss_pred cccccC--hhhhhccc
Confidence 553322 44444443
No 106
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.37 E-value=4e-12 Score=76.31 Aligned_cols=76 Identities=24% Similarity=0.402 Sum_probs=29.9
Q ss_pred EEEecCCcceecCChhhcCCCCCCEEEeecccceecCChhhcCCCCCcEEEcccceeceecChhhcCCCCCcEEEcccce
Q 034189 5 RSNLGQNLLTGKIPPSLGRLSSLQTLSLLENGLNGTLPPELGKLSNLQKLRLQSNNLRGDLPKDYENLKNLTIFGIAGNY 84 (102)
Q Consensus 5 ~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~p~~~~~~~~L~~l~l~~n~ 84 (102)
+|++++|.++ .++. +..+++|+.+++++|.++ ..+ .+..+++|+.+++++|++.. .+. +..+++|+.+++++|.
T Consensus 67 ~L~L~~n~i~-~~~~-~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~ 140 (308)
T 1h6u_A 67 GLELKDNQIT-DLAP-LKNLTKITELELSGNPLK-NVS-AIAGLQSIKTLDLTSTQITD-VTP-LAGLSNLQVLYLDLNQ 140 (308)
T ss_dssp EEECCSSCCC-CCGG-GTTCCSCCEEECCSCCCS-CCG-GGTTCTTCCEEECTTSCCCC-CGG-GTTCTTCCEEECCSSC
T ss_pred EEEccCCcCC-CChh-HccCCCCCEEEccCCcCC-Cch-hhcCCCCCCEEECCCCCCCC-chh-hcCCCCCCEEECCCCc
Confidence 3444444444 2222 344444444444444444 111 23344444444444444431 211 3334444444444444
Q ss_pred ee
Q 034189 85 LS 86 (102)
Q Consensus 85 ~~ 86 (102)
++
T Consensus 141 l~ 142 (308)
T 1h6u_A 141 IT 142 (308)
T ss_dssp CC
T ss_pred cC
Confidence 33
No 107
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.36 E-value=5.2e-12 Score=75.31 Aligned_cols=77 Identities=30% Similarity=0.394 Sum_probs=32.7
Q ss_pred EEEEecCCcceecCChhhcCCCCCCEEEeecccceecCChhhcCCCCCcEEEcccceeceecChhhcCCCCCcEEEcccc
Q 034189 4 CRSNLGQNLLTGKIPPSLGRLSSLQTLSLLENGLNGTLPPELGKLSNLQKLRLQSNNLRGDLPKDYENLKNLTIFGIAGN 83 (102)
Q Consensus 4 ~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~p~~~~~~~~L~~l~l~~n 83 (102)
++|++++|.+++ ++. +..+++|+.+++++|.++ ..+ .+..+++|+.+++++|++.. . ..+..+++|+.+++++|
T Consensus 71 ~~L~L~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~-~~~-~l~~l~~L~~L~L~~n~i~~-~-~~l~~l~~L~~L~l~~n 144 (291)
T 1h6t_A 71 TKLFLNGNKLTD-IKP-LANLKNLGWLFLDENKVK-DLS-SLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNN 144 (291)
T ss_dssp CEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCC-CGG-GGTTCTTCCEEECTTSCCCC-C-GGGGGCTTCCEEECCSS
T ss_pred CEEEccCCccCC-Ccc-cccCCCCCEEECCCCcCC-CCh-hhccCCCCCEEECCCCcCCC-C-hhhcCCCCCCEEEccCC
Confidence 344555555442 222 444444455554444444 111 24444444444444444442 1 22334444444444444
Q ss_pred eee
Q 034189 84 YLS 86 (102)
Q Consensus 84 ~~~ 86 (102)
.++
T Consensus 145 ~l~ 147 (291)
T 1h6t_A 145 KIT 147 (291)
T ss_dssp CCC
T ss_pred cCC
Confidence 443
No 108
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.35 E-value=4.6e-12 Score=75.55 Aligned_cols=88 Identities=25% Similarity=0.315 Sum_probs=39.0
Q ss_pred EEEecCCcceecCChhhcCCCCCCEEEeecccceecCChhhcCCCCCcEEEcccceeceecChhhcCCCCCcEEEcccce
Q 034189 5 RSNLGQNLLTGKIPPSLGRLSSLQTLSLLENGLNGTLPPELGKLSNLQKLRLQSNNLRGDLPKDYENLKNLTIFGIAGNY 84 (102)
Q Consensus 5 ~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~p~~~~~~~~L~~l~l~~n~ 84 (102)
+|++++|.++. + +.+..+++|+.+++++|.+++ + +.+..+++|+.+++++|++.+. +. +..+++|+.+++++|.
T Consensus 116 ~L~L~~n~i~~-~-~~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~N~l~~~-~~-l~~l~~L~~L~L~~N~ 189 (291)
T 1h6t_A 116 SLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITD-I-TVLSRLTKLDTLSLEDNQISDI-VP-LAGLTKLQNLYLSKNH 189 (291)
T ss_dssp EEECTTSCCCC-C-GGGGGCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCCC-GG-GTTCTTCCEEECCSSC
T ss_pred EEECCCCcCCC-C-hhhcCCCCCCEEEccCCcCCc-c-hhhccCCCCCEEEccCCccccc-hh-hcCCCccCEEECCCCc
Confidence 34444444442 2 223444444444444444442 2 2344445555555555554422 22 4445555555555555
Q ss_pred eeeecchhhhccCCce
Q 034189 85 LSGRIPTFIAKWVNLY 100 (102)
Q Consensus 85 ~~~~~~~~~~~l~~L~ 100 (102)
++. ++ .+..+++|+
T Consensus 190 i~~-l~-~l~~l~~L~ 203 (291)
T 1h6t_A 190 ISD-LR-ALAGLKNLD 203 (291)
T ss_dssp CCB-CG-GGTTCTTCS
T ss_pred CCC-Ch-hhccCCCCC
Confidence 542 22 244444443
No 109
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.35 E-value=2.7e-13 Score=81.30 Aligned_cols=93 Identities=14% Similarity=0.056 Sum_probs=55.6
Q ss_pred eEEEEecCCcceecCChhhcCCCCCCEEEeecccceec--CC--hhhcCCCCCcEEEcccceeceecCh----hhcCCCC
Q 034189 3 SCRSNLGQNLLTGKIPPSLGRLSSLQTLSLLENGLNGT--LP--PELGKLSNLQKLRLQSNNLRGDLPK----DYENLKN 74 (102)
Q Consensus 3 ~~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~~~~~--~~--~~~~~~~~L~~l~l~~n~~~~~~p~----~~~~~~~ 74 (102)
.++|++++|.+.+..+..+..+++|+.+++++|.+.+. .+ ..+..+++|+++++++|+++ ..+. .+..+++
T Consensus 147 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~l~~ 225 (310)
T 4glp_A 147 LKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAAAGVQ 225 (310)
T ss_dssp CCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHHTCC
T ss_pred CCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHhcCCC
Confidence 35677777777755556677777777777777775431 11 11245566666666666665 2222 2345566
Q ss_pred CcEEEcccceeeeecchhhhcc
Q 034189 75 LTIFGIAGNYLSGRIPTFIAKW 96 (102)
Q Consensus 75 L~~l~l~~n~~~~~~~~~~~~l 96 (102)
|++|++++|.+.+..|..+..+
T Consensus 226 L~~L~Ls~N~l~~~~p~~~~~~ 247 (310)
T 4glp_A 226 PHSLDLSHNSLRATVNPSAPRC 247 (310)
T ss_dssp CSSEECTTSCCCCCCCSCCSSC
T ss_pred CCEEECCCCCCCccchhhHHhc
Confidence 7777777776665545544444
No 110
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.35 E-value=5e-12 Score=76.58 Aligned_cols=94 Identities=26% Similarity=0.349 Sum_probs=73.5
Q ss_pred eEEEEecCCcceecCChhhcCCCCCCEEEeecccceecCChhhcCCCCCcEEEcccceeceecChhhcCCCCCcEEEccc
Q 034189 3 SCRSNLGQNLLTGKIPPSLGRLSSLQTLSLLENGLNGTLPPELGKLSNLQKLRLQSNNLRGDLPKDYENLKNLTIFGIAG 82 (102)
Q Consensus 3 ~~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~p~~~~~~~~L~~l~l~~ 82 (102)
.++|++++|.++ ..+. +..+++|+.+++++|.++ .. +.+..+++|+.+++++|++.. . ..+..+++|+.+++++
T Consensus 223 L~~L~l~~n~l~-~~~~-~~~l~~L~~L~l~~n~l~-~~-~~~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~L~~ 296 (347)
T 4fmz_A 223 LNSLKIGNNKIT-DLSP-LANLSQLTWLEIGTNQIS-DI-NAVKDLTKLKMLNVGSNQISD-I-SVLNNLSQLNSLFLNN 296 (347)
T ss_dssp CCEEECCSSCCC-CCGG-GTTCTTCCEEECCSSCCC-CC-GGGTTCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCS
T ss_pred CCEEEccCCccC-CCcc-hhcCCCCCEEECCCCccC-CC-hhHhcCCCcCEEEccCCccCC-C-hhhcCCCCCCEEECcC
Confidence 457888888887 4444 778888888888888887 33 457788889999999988873 3 4577888999999999
Q ss_pred ceeeeecchhhhccCCceeC
Q 034189 83 NYLSGRIPTFIAKWVNLYAL 102 (102)
Q Consensus 83 n~~~~~~~~~~~~l~~L~~l 102 (102)
|.+.+..+..+..+++|+.|
T Consensus 297 n~l~~~~~~~l~~l~~L~~L 316 (347)
T 4fmz_A 297 NQLGNEDMEVIGGLTNLTTL 316 (347)
T ss_dssp SCCCGGGHHHHHTCTTCSEE
T ss_pred CcCCCcChhHhhccccCCEE
Confidence 99887777888888887753
No 111
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.34 E-value=1.9e-14 Score=81.47 Aligned_cols=78 Identities=26% Similarity=0.320 Sum_probs=38.8
Q ss_pred EEEEecCCcceecCChhhcCCCCCCEEEeecccceecCChhhcCCCCCcEEEcccceeceecChhhcCCCCCcEEEcccc
Q 034189 4 CRSNLGQNLLTGKIPPSLGRLSSLQTLSLLENGLNGTLPPELGKLSNLQKLRLQSNNLRGDLPKDYENLKNLTIFGIAGN 83 (102)
Q Consensus 4 ~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~p~~~~~~~~L~~l~l~~n 83 (102)
++|++++|.++ .+| .+..+++|+.+++++|.++ .+|..+..+++|+.+++++|++.+ .| .+..+++|+++++++|
T Consensus 51 ~~L~ls~n~l~-~l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N 125 (198)
T 1ds9_A 51 KHLALSTNNIE-KIS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNN 125 (198)
T ss_dssp SEEECSEEEES-CCC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEE
T ss_pred CEEECCCCCCc-ccc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCC
Confidence 44555555555 244 4555555555555555555 444444444455555555555542 22 2344444555555555
Q ss_pred eee
Q 034189 84 YLS 86 (102)
Q Consensus 84 ~~~ 86 (102)
.+.
T Consensus 126 ~i~ 128 (198)
T 1ds9_A 126 KIT 128 (198)
T ss_dssp ECC
T ss_pred cCC
Confidence 444
No 112
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.34 E-value=6.6e-12 Score=75.37 Aligned_cols=15 Identities=33% Similarity=0.487 Sum_probs=5.7
Q ss_pred CCCCCCEEEeecccc
Q 034189 23 RLSSLQTLSLLENGL 37 (102)
Q Consensus 23 ~l~~L~~l~l~~n~~ 37 (102)
.+++|+.+++++|.+
T Consensus 105 ~l~~L~~L~l~~n~l 119 (308)
T 1h6u_A 105 GLQSIKTLDLTSTQI 119 (308)
T ss_dssp TCTTCCEEECTTSCC
T ss_pred CCCCCCEEECCCCCC
Confidence 333333333333333
No 113
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.33 E-value=7.2e-12 Score=73.78 Aligned_cols=91 Identities=22% Similarity=0.280 Sum_probs=74.6
Q ss_pred eEEEEecCCcceecCChhhcCCCCCCEEEeecccceecCChhhcCCCCCcEEEcccceeceecChhhcCCCCCcEEEccc
Q 034189 3 SCRSNLGQNLLTGKIPPSLGRLSSLQTLSLLENGLNGTLPPELGKLSNLQKLRLQSNNLRGDLPKDYENLKNLTIFGIAG 82 (102)
Q Consensus 3 ~~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~p~~~~~~~~L~~l~l~~ 82 (102)
.++|++++|.++ .++ .+..+++|+.+++++|.++ .++. +..+++|+.+++++|++. .+|.. .. ++|+.+++++
T Consensus 43 L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~-~~~~-l~~l~~L~~L~L~~N~l~-~l~~~-~~-~~L~~L~L~~ 115 (263)
T 1xeu_A 43 VQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQIS-DLSP-LKDLTKLEELSVNRNRLK-NLNGI-PS-ACLSRLFLDN 115 (263)
T ss_dssp CSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCC-CCGG-GTTCSSCCEEECCSSCCS-CCTTC-CC-SSCCEEECCS
T ss_pred CcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccC-CChh-hccCCCCCEEECCCCccC-CcCcc-cc-CcccEEEccC
Confidence 467999999998 566 6788999999999999999 4555 889999999999999998 45543 33 8999999999
Q ss_pred ceeeeecchhhhccCCceeC
Q 034189 83 NYLSGRIPTFIAKWVNLYAL 102 (102)
Q Consensus 83 n~~~~~~~~~~~~l~~L~~l 102 (102)
|.+++ ++ .+..+++|+.|
T Consensus 116 N~l~~-~~-~l~~l~~L~~L 133 (263)
T 1xeu_A 116 NELRD-TD-SLIHLKNLEIL 133 (263)
T ss_dssp SCCSB-SG-GGTTCTTCCEE
T ss_pred CccCC-Ch-hhcCcccccEE
Confidence 99985 43 57788887753
No 114
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.31 E-value=7.2e-12 Score=76.31 Aligned_cols=88 Identities=16% Similarity=0.159 Sum_probs=62.9
Q ss_pred eEEEEecCCcceecCChhhcCCCCCCEEEeecccceecCCh-hhcCCCCCcE-EEcccceeceecChhhcCCCCCcEEEc
Q 034189 3 SCRSNLGQNLLTGKIPPSLGRLSSLQTLSLLENGLNGTLPP-ELGKLSNLQK-LRLQSNNLRGDLPKDYENLKNLTIFGI 80 (102)
Q Consensus 3 ~~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~-~~~~~~~L~~-l~l~~n~~~~~~p~~~~~~~~L~~l~l 80 (102)
+++|++++|+++...+..|.++++|+.|++++|.+.+.++. .+..++++.. +.+..|++....|..|..+++|+++++
T Consensus 32 l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l 111 (350)
T 4ay9_X 32 AIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLI 111 (350)
T ss_dssp CSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEE
T ss_pred CCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccccc
Confidence 45788888888844345678888888888888887645554 4667777664 455567777555677788888888888
Q ss_pred ccceeeeecc
Q 034189 81 AGNYLSGRIP 90 (102)
Q Consensus 81 ~~n~~~~~~~ 90 (102)
++|.+....+
T Consensus 112 ~~n~l~~~~~ 121 (350)
T 4ay9_X 112 SNTGIKHLPD 121 (350)
T ss_dssp EEECCSSCCC
T ss_pred cccccccCCc
Confidence 8888774433
No 115
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.30 E-value=3.1e-13 Score=81.52 Aligned_cols=82 Identities=22% Similarity=0.209 Sum_probs=36.6
Q ss_pred EEEecCCcceec-CChhhcCCCCCCEEEeecccceecCChhhcCCCCCcEEEcccc-eecee-cChhhcCCCCCcEEEcc
Q 034189 5 RSNLGQNLLTGK-IPPSLGRLSSLQTLSLLENGLNGTLPPELGKLSNLQKLRLQSN-NLRGD-LPKDYENLKNLTIFGIA 81 (102)
Q Consensus 5 ~L~l~~n~~~~~-~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n-~~~~~-~p~~~~~~~~L~~l~l~ 81 (102)
+|++++|.++.. ++..+..+++|+.+++++|.+++..+..+..+++|+.+++++| .+++. .+..+..+++|++++++
T Consensus 97 ~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~ 176 (336)
T 2ast_B 97 HMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLS 176 (336)
T ss_dssp EEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECC
T ss_pred EEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCC
Confidence 444444444422 3334444455555555555444333444444455555555544 33321 23333444445555554
Q ss_pred cc-eee
Q 034189 82 GN-YLS 86 (102)
Q Consensus 82 ~n-~~~ 86 (102)
+| .++
T Consensus 177 ~~~~l~ 182 (336)
T 2ast_B 177 WCFDFT 182 (336)
T ss_dssp CCTTCC
T ss_pred CCCCcC
Confidence 44 444
No 116
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.29 E-value=4e-14 Score=80.14 Aligned_cols=96 Identities=26% Similarity=0.293 Sum_probs=78.9
Q ss_pred eEEEEecCCcceecCChhhcCCCCCCEEEeecccceecCChhhcCCCCCcEEEcccceeceecC--hhhcCCCCCcEEEc
Q 034189 3 SCRSNLGQNLLTGKIPPSLGRLSSLQTLSLLENGLNGTLPPELGKLSNLQKLRLQSNNLRGDLP--KDYENLKNLTIFGI 80 (102)
Q Consensus 3 ~~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~p--~~~~~~~~L~~l~l 80 (102)
.++|++++|.++ .+|..+..+++|+.+++++|.+++ +| .+..+++|+.+++++|++.. .+ ..+..+++|+++++
T Consensus 72 L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~-~~~~~~l~~l~~L~~L~l 147 (198)
T 1ds9_A 72 LRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITN-WGEIDKLAALDKLEDLLL 147 (198)
T ss_dssp CCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCC-HHHHHHHTTTTTCSEEEE
T ss_pred CCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCc-hhHHHHHhcCCCCCEEEe
Confidence 468999999999 788888888999999999999994 44 57788999999999999983 33 36788999999999
Q ss_pred ccceeeeecch----------hhhccCCceeC
Q 034189 81 AGNYLSGRIPT----------FIAKWVNLYAL 102 (102)
Q Consensus 81 ~~n~~~~~~~~----------~~~~l~~L~~l 102 (102)
++|.+.+..|. .+..+++|+.|
T Consensus 148 ~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~L 179 (198)
T 1ds9_A 148 AGNPLYNDYKENNATSEYRIEVVKRLPNLKKL 179 (198)
T ss_dssp CSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEE
T ss_pred cCCccccccccccchHHHHHHHHHhCCCcEEE
Confidence 99999766543 36777777653
No 117
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.29 E-value=1.6e-11 Score=79.70 Aligned_cols=89 Identities=26% Similarity=0.345 Sum_probs=43.5
Q ss_pred EEEEecCCcceecCChhhcCCCCCCEEEeecccceecCChhhcCCCCCcEEEcccceeceecChhhcCCCCCcEEEcccc
Q 034189 4 CRSNLGQNLLTGKIPPSLGRLSSLQTLSLLENGLNGTLPPELGKLSNLQKLRLQSNNLRGDLPKDYENLKNLTIFGIAGN 83 (102)
Q Consensus 4 ~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~p~~~~~~~~L~~l~l~~n 83 (102)
++|++++|.++. + +.+..+++|+.|++++|.+++ + ..+..+++|+.|++++|++.+..| +..+++|+.|++++|
T Consensus 112 ~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N 185 (605)
T 1m9s_A 112 KSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITD-I-TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKN 185 (605)
T ss_dssp CEEECTTSCCCC-C-GGGGGCTTCSEEECCSSCCCC-C-GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSS
T ss_pred CEEEecCCCCCC-C-ccccCCCccCEEECCCCccCC-c-hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCC
Confidence 344555555442 2 234445555555555555552 2 334555555555555555553322 455555555555555
Q ss_pred eeeeecchhhhccCCce
Q 034189 84 YLSGRIPTFIAKWVNLY 100 (102)
Q Consensus 84 ~~~~~~~~~~~~l~~L~ 100 (102)
.+.+ ++ .+..+++|+
T Consensus 186 ~i~~-l~-~l~~l~~L~ 200 (605)
T 1m9s_A 186 HISD-LR-ALAGLKNLD 200 (605)
T ss_dssp CCCB-CG-GGTTCTTCS
T ss_pred CCCC-Ch-HHccCCCCC
Confidence 5553 22 344455444
No 118
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.28 E-value=1.8e-11 Score=79.43 Aligned_cols=74 Identities=28% Similarity=0.445 Sum_probs=34.1
Q ss_pred hcCCCCCCEEEeecccceecCChhhcCCCCCcEEEcccceeceecChhhcCCCCCcEEEcccceeeeecchhhhccCCce
Q 034189 21 LGRLSSLQTLSLLENGLNGTLPPELGKLSNLQKLRLQSNNLRGDLPKDYENLKNLTIFGIAGNYLSGRIPTFIAKWVNLY 100 (102)
Q Consensus 21 ~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~~~~~~~l~~L~ 100 (102)
+..+++|+.|++++|.+. .+ +.+..+++|+.|++++|++.. + ..+..+++|+.|++++|.+.+..| +..+++|+
T Consensus 105 l~~l~~L~~L~Ls~N~l~-~l-~~l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~ 178 (605)
T 1m9s_A 105 LKDLKKLKSLSLEHNGIS-DI-NGLVHLPQLESLYLGNNKITD-I-TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQ 178 (605)
T ss_dssp STTCTTCCEEECTTSCCC-CC-GGGGGCTTCSEEECCSSCCCC-C-GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCC
T ss_pred hccCCCCCEEEecCCCCC-CC-ccccCCCccCEEECCCCccCC-c-hhhcccCCCCEEECcCCcCCCchh--hccCCCCC
Confidence 334444444444444444 11 224444455555555555442 2 334455555555555555553322 44444444
No 119
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.28 E-value=2.1e-11 Score=76.63 Aligned_cols=89 Identities=29% Similarity=0.461 Sum_probs=54.4
Q ss_pred EEEEecCCcceecCChhhcCCCCCCEEEeecccceecCChhhcCCCCCcEEEcccceeceecChhhcCCCCCcEEEcccc
Q 034189 4 CRSNLGQNLLTGKIPPSLGRLSSLQTLSLLENGLNGTLPPELGKLSNLQKLRLQSNNLRGDLPKDYENLKNLTIFGIAGN 83 (102)
Q Consensus 4 ~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~p~~~~~~~~L~~l~l~~n 83 (102)
++|++++|.++ .++. +..+++|+.+++++|.++ ..+. +..+++|+.+++++|++.. .+. +..+++|+++++++|
T Consensus 71 ~~L~Ls~n~l~-~~~~-~~~l~~L~~L~l~~n~l~-~~~~-~~~l~~L~~L~L~~n~l~~-~~~-~~~l~~L~~L~l~~n 144 (466)
T 1o6v_A 71 TQINFSNNQLT-DITP-LKNLTKLVDILMNNNQIA-DITP-LANLTNLTGLTLFNNQITD-IDP-LKNLTNLNRLELSSN 144 (466)
T ss_dssp CEEECCSSCCC-CCGG-GTTCTTCCEEECCSSCCC-CCGG-GTTCTTCCEEECCSSCCCC-CGG-GTTCTTCSEEEEEEE
T ss_pred CEEECCCCccC-Cchh-hhccccCCEEECCCCccc-cChh-hcCCCCCCEEECCCCCCCC-ChH-HcCCCCCCEEECCCC
Confidence 45666777666 3333 666677777777777666 3333 6667777777777776663 332 666777777777777
Q ss_pred eeeeecchhhhccCCce
Q 034189 84 YLSGRIPTFIAKWVNLY 100 (102)
Q Consensus 84 ~~~~~~~~~~~~l~~L~ 100 (102)
.+.+ ++ .+..+++|+
T Consensus 145 ~l~~-~~-~~~~l~~L~ 159 (466)
T 1o6v_A 145 TISD-IS-ALSGLTSLQ 159 (466)
T ss_dssp EECC-CG-GGTTCTTCS
T ss_pred ccCC-Ch-hhccCCccc
Confidence 6663 33 244444444
No 120
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.25 E-value=1.9e-12 Score=78.12 Aligned_cols=98 Identities=17% Similarity=0.169 Sum_probs=78.4
Q ss_pred EEEEecCCcceecCChhhcCCCCCCEEEeecccceec-CChhhcCCCCCcEEEcccceeceecChhhcCCCCCcEEEccc
Q 034189 4 CRSNLGQNLLTGKIPPSLGRLSSLQTLSLLENGLNGT-LPPELGKLSNLQKLRLQSNNLRGDLPKDYENLKNLTIFGIAG 82 (102)
Q Consensus 4 ~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~~~~~-~~~~~~~~~~L~~l~l~~n~~~~~~p~~~~~~~~L~~l~l~~ 82 (102)
+.+++++|.+.+..+. +..+++|+.+++++|.+++. .+..+..+++|+.+++++|++.+..+..+..+++|++|++++
T Consensus 73 ~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~ 151 (336)
T 2ast_B 73 IAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSG 151 (336)
T ss_dssp SEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTT
T ss_pred eEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCC
Confidence 5678888888855444 56789999999999998754 666788899999999999998877777888899999999999
Q ss_pred c-eeeee-cchhhhccCCceeC
Q 034189 83 N-YLSGR-IPTFIAKWVNLYAL 102 (102)
Q Consensus 83 n-~~~~~-~~~~~~~l~~L~~l 102 (102)
| .+++. ++..+..+++|+.|
T Consensus 152 ~~~l~~~~l~~~~~~~~~L~~L 173 (336)
T 2ast_B 152 CSGFSEFALQTLLSSCSRLDEL 173 (336)
T ss_dssp CBSCCHHHHHHHHHHCTTCCEE
T ss_pred CCCCCHHHHHHHHhcCCCCCEE
Confidence 8 67653 56667778877653
No 121
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.25 E-value=2.9e-11 Score=76.10 Aligned_cols=88 Identities=23% Similarity=0.257 Sum_probs=57.5
Q ss_pred eEEEEecCCcceecCChhhcCCCCCCEEEeecccceecCChhhcCCCCCcEEEcccceeceecChhhcCCCCCcEEEccc
Q 034189 3 SCRSNLGQNLLTGKIPPSLGRLSSLQTLSLLENGLNGTLPPELGKLSNLQKLRLQSNNLRGDLPKDYENLKNLTIFGIAG 82 (102)
Q Consensus 3 ~~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~p~~~~~~~~L~~l~l~~ 82 (102)
.++|++++|.+++ +| .+..+++|+.+++++|.+++ ++ +..+++|+++++++|++.+ .+ +..+++|+++++++
T Consensus 44 L~~L~Ls~n~l~~-~~-~l~~l~~L~~L~Ls~n~l~~-~~--~~~l~~L~~L~Ls~N~l~~-~~--~~~l~~L~~L~L~~ 115 (457)
T 3bz5_A 44 LTSLDCHNSSITD-MT-GIEKLTGLTKLICTSNNITT-LD--LSQNTNLTYLACDSNKLTN-LD--VTPLTKLTYLNCDT 115 (457)
T ss_dssp CCEEECCSSCCCC-CT-TGGGCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSC-CC--CTTCTTCCEEECCS
T ss_pred CCEEEccCCCccc-Ch-hhcccCCCCEEEccCCcCCe-Ec--cccCCCCCEEECcCCCCce-ee--cCCCCcCCEEECCC
Confidence 3567778887773 44 56777777777777777773 33 5667777777777777763 33 56667777777777
Q ss_pred ceeeeecchhhhccCCcee
Q 034189 83 NYLSGRIPTFIAKWVNLYA 101 (102)
Q Consensus 83 n~~~~~~~~~~~~l~~L~~ 101 (102)
|.+++ ++ ++.+++|+.
T Consensus 116 N~l~~-l~--~~~l~~L~~ 131 (457)
T 3bz5_A 116 NKLTK-LD--VSQNPLLTY 131 (457)
T ss_dssp SCCSC-CC--CTTCTTCCE
T ss_pred CcCCe-ec--CCCCCcCCE
Confidence 76663 33 555555543
No 122
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.24 E-value=3.4e-11 Score=75.70 Aligned_cols=73 Identities=25% Similarity=0.379 Sum_probs=32.5
Q ss_pred cCCCCCCEEEeecccceecCChhhcCCCCCcEEEcccceeceecChhhcCCCCCcEEEcccceeeeecchhhhccCCce
Q 034189 22 GRLSSLQTLSLLENGLNGTLPPELGKLSNLQKLRLQSNNLRGDLPKDYENLKNLTIFGIAGNYLSGRIPTFIAKWVNLY 100 (102)
Q Consensus 22 ~~l~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~~~~~~~l~~L~ 100 (102)
..+++|+.+++++|.+++..+ +..+++|+.+++++|++.+. ..+..+++|+.+++++|.+++..| +..+++|+
T Consensus 306 ~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~ 378 (466)
T 1o6v_A 306 SNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRIT 378 (466)
T ss_dssp GGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCC
T ss_pred cCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCC
Confidence 344444444444444442211 33444444555544444421 234445555555555555554333 44444443
No 123
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.20 E-value=3.2e-12 Score=78.57 Aligned_cols=84 Identities=19% Similarity=0.195 Sum_probs=41.7
Q ss_pred EEEEecCCccee-----cCChhhcCCCCCCEEEeecccce----ecCChhhcCCCCCcEEEcccceecee----cChhhc
Q 034189 4 CRSNLGQNLLTG-----KIPPSLGRLSSLQTLSLLENGLN----GTLPPELGKLSNLQKLRLQSNNLRGD----LPKDYE 70 (102)
Q Consensus 4 ~~L~l~~n~~~~-----~~~~~~~~l~~L~~l~l~~n~~~----~~~~~~~~~~~~L~~l~l~~n~~~~~----~p~~~~ 70 (102)
++|++++|.++. ..+..+..+++|+.+++++|.++ ..++..+..+++|+.+++++|++... ++..+.
T Consensus 190 ~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~ 269 (386)
T 2ca6_A 190 HTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFS 269 (386)
T ss_dssp CEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHH
T ss_pred CEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHh
Confidence 345555555441 11224445555555555555553 23344455555566666665555432 233332
Q ss_pred C--CCCCcEEEcccceeee
Q 034189 71 N--LKNLTIFGIAGNYLSG 87 (102)
Q Consensus 71 ~--~~~L~~l~l~~n~~~~ 87 (102)
. +++|++|++++|.++.
T Consensus 270 ~~~~~~L~~L~L~~n~i~~ 288 (386)
T 2ca6_A 270 KLENIGLQTLRLQYNEIEL 288 (386)
T ss_dssp TCSSCCCCEEECCSSCCBH
T ss_pred hccCCCeEEEECcCCcCCH
Confidence 2 5556666666665554
No 124
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.19 E-value=6.1e-11 Score=76.52 Aligned_cols=41 Identities=22% Similarity=0.291 Sum_probs=17.1
Q ss_pred cEEEcccceeceecChhhcCCCCCcEEEcccceeeeecchhh
Q 034189 52 QKLRLQSNNLRGDLPKDYENLKNLTIFGIAGNYLSGRIPTFI 93 (102)
Q Consensus 52 ~~l~l~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~~~~~ 93 (102)
+.+++++|+++ .+|..+..+++|+.+++++|.+++.+|..+
T Consensus 210 ~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l 250 (571)
T 3cvr_A 210 IFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESL 250 (571)
T ss_dssp EEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHH
T ss_pred eEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHH
Confidence 44444444444 334333334444444444444444444333
No 125
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.18 E-value=6.9e-12 Score=76.66 Aligned_cols=87 Identities=21% Similarity=0.224 Sum_probs=47.8
Q ss_pred eEEEEecCCcceecCC----hhhcCCC-CCCEEEeecccceecCChhhcCC-----CCCcEEEcccceeceecChh----
Q 034189 3 SCRSNLGQNLLTGKIP----PSLGRLS-SLQTLSLLENGLNGTLPPELGKL-----SNLQKLRLQSNNLRGDLPKD---- 68 (102)
Q Consensus 3 ~~~L~l~~n~~~~~~~----~~~~~l~-~L~~l~l~~n~~~~~~~~~~~~~-----~~L~~l~l~~n~~~~~~p~~---- 68 (102)
.++|++++|.++...+ ..+..++ +|+.+++++|.+++..+..+..+ ++|+.+++++|+++...+..
T Consensus 24 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~ 103 (362)
T 3goz_A 24 VTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKT 103 (362)
T ss_dssp CCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHH
T ss_pred ceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHH
Confidence 3456666666664333 4455565 66666666666664434333332 56666666666665433332
Q ss_pred hcCC-CCCcEEEcccceeeeec
Q 034189 69 YENL-KNLTIFGIAGNYLSGRI 89 (102)
Q Consensus 69 ~~~~-~~L~~l~l~~n~~~~~~ 89 (102)
+..+ ++|++|++++|.+++..
T Consensus 104 l~~~~~~L~~L~Ls~N~l~~~~ 125 (362)
T 3goz_A 104 LAAIPFTITVLDLGWNDFSSKS 125 (362)
T ss_dssp HHTSCTTCCEEECCSSCGGGSC
T ss_pred HHhCCCCccEEECcCCcCCcHH
Confidence 2223 56666666666665433
No 126
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.18 E-value=2.8e-11 Score=78.10 Aligned_cols=87 Identities=29% Similarity=0.328 Sum_probs=70.5
Q ss_pred eEEEEecCCcceecCChhhcCCCCCCEEEeecccceecCChhhcCCCCCcEEEcccceeceecChhhcCCCCC-------
Q 034189 3 SCRSNLGQNLLTGKIPPSLGRLSSLQTLSLLENGLNGTLPPELGKLSNLQKLRLQSNNLRGDLPKDYENLKNL------- 75 (102)
Q Consensus 3 ~~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~p~~~~~~~~L------- 75 (102)
.+.|++++|.++ .+|. .+++|+.+++++|.++ .+|. +. ++|+.+++++|+++ .+|. +.. +|
T Consensus 142 L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls~N~L~-~lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L 209 (571)
T 3cvr_A 142 LEYINADNNQLT-MLPE---LPTSLEVLSVRNNQLT-FLPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETE 209 (571)
T ss_dssp CCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCS-CCCC-CC--TTCCEEECCSSCCS-SCCC-CC----------CC
T ss_pred ccEEeCCCCccC-cCCC---cCCCcCEEECCCCCCC-Ccch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccc
Confidence 467889999988 4665 5789999999999999 4777 54 89999999999999 7776 443 67
Q ss_pred cEEEcccceeeeecchhhhccCCceeC
Q 034189 76 TIFGIAGNYLSGRIPTFIAKWVNLYAL 102 (102)
Q Consensus 76 ~~l~l~~n~~~~~~~~~~~~l~~L~~l 102 (102)
+.+++++|.++ .+|..+..+++|+.|
T Consensus 210 ~~L~Ls~N~l~-~lp~~l~~l~~L~~L 235 (571)
T 3cvr_A 210 IFFRCRENRIT-HIPENILSLDPTCTI 235 (571)
T ss_dssp EEEECCSSCCC-CCCGGGGGSCTTEEE
T ss_pred eEEecCCCcce-ecCHHHhcCCCCCEE
Confidence 99999999999 788888888888753
No 127
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.17 E-value=3.7e-11 Score=78.21 Aligned_cols=81 Identities=31% Similarity=0.334 Sum_probs=43.0
Q ss_pred EEEecCCcceecCChhhcCCCCCCEEEeecccceecCChhhcCCCCCcEEEcccceeceecChhhcCCCCCcEEEcccce
Q 034189 5 RSNLGQNLLTGKIPPSLGRLSSLQTLSLLENGLNGTLPPELGKLSNLQKLRLQSNNLRGDLPKDYENLKNLTIFGIAGNY 84 (102)
Q Consensus 5 ~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~p~~~~~~~~L~~l~l~~n~ 84 (102)
+|++++|.++ .+| ..+++|+.+++++|.++ .+|. .+++|+.+++++|+++ .+|..+..+++|+.+++++|.
T Consensus 225 ~L~Ls~N~L~-~lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~ 295 (622)
T 3g06_A 225 ELIVSGNRLT-SLP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNP 295 (622)
T ss_dssp EEECCSSCCS-CCC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCC
T ss_pred EEEccCCccC-cCC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCC
Confidence 4444455444 233 23345555555555555 3343 3455666666666665 455556666666666666666
Q ss_pred eeeecchhhh
Q 034189 85 LSGRIPTFIA 94 (102)
Q Consensus 85 ~~~~~~~~~~ 94 (102)
+++..+..+.
T Consensus 296 l~~~~~~~l~ 305 (622)
T 3g06_A 296 LSERTLQALR 305 (622)
T ss_dssp CCHHHHHHHH
T ss_pred CCCcCHHHHH
Confidence 6555444443
No 128
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.16 E-value=1.2e-10 Score=73.30 Aligned_cols=86 Identities=24% Similarity=0.225 Sum_probs=59.7
Q ss_pred eEEEEecCCcceecCChhhcCCCCCCEEEeecccceecCChhhcCCCCCcEEEcccceeceecChhhcCCCCCcEEEccc
Q 034189 3 SCRSNLGQNLLTGKIPPSLGRLSSLQTLSLLENGLNGTLPPELGKLSNLQKLRLQSNNLRGDLPKDYENLKNLTIFGIAG 82 (102)
Q Consensus 3 ~~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~p~~~~~~~~L~~l~l~~ 82 (102)
.++|++++|.+++ ++ +..+++|+.+++++|.+++ .+ +..+++|+++++++|++.+ .| +..+++|+++++++
T Consensus 66 L~~L~Ls~n~l~~-~~--~~~l~~L~~L~Ls~N~l~~-~~--~~~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l~~ 136 (457)
T 3bz5_A 66 LTKLICTSNNITT-LD--LSQNTNLTYLACDSNKLTN-LD--VTPLTKLTYLNCDTNKLTK-LD--VSQNPLLTYLNCAR 136 (457)
T ss_dssp CSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSC-CC--CTTCTTCCEEECCSSCCSC-CC--CTTCTTCCEEECTT
T ss_pred CCEEEccCCcCCe-Ec--cccCCCCCEEECcCCCCce-ee--cCCCCcCCEEECCCCcCCe-ec--CCCCCcCCEEECCC
Confidence 4577888888874 34 6777888888888888773 33 6677788888888887773 44 66777788888877
Q ss_pred ceeeeecchhhhccCCce
Q 034189 83 NYLSGRIPTFIAKWVNLY 100 (102)
Q Consensus 83 n~~~~~~~~~~~~l~~L~ 100 (102)
|.+++ ++ ++.+++|+
T Consensus 137 N~l~~-l~--l~~l~~L~ 151 (457)
T 3bz5_A 137 NTLTE-ID--VSHNTQLT 151 (457)
T ss_dssp SCCSC-CC--CTTCTTCC
T ss_pred Cccce-ec--cccCCcCC
Confidence 77774 22 44444444
No 129
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.16 E-value=1.2e-11 Score=75.61 Aligned_cols=97 Identities=15% Similarity=0.175 Sum_probs=76.3
Q ss_pred EEEecCCcceecCChhhcCCCCCCEEEeecccceecCC----hhhcCCC-CCcEEEcccceeceecChhhcCC-----CC
Q 034189 5 RSNLGQNLLTGKIPPSLGRLSSLQTLSLLENGLNGTLP----PELGKLS-NLQKLRLQSNNLRGDLPKDYENL-----KN 74 (102)
Q Consensus 5 ~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~----~~~~~~~-~L~~l~l~~n~~~~~~p~~~~~~-----~~ 74 (102)
.+.+++|.+++.+|..+....+|+.+++++|.+++..+ ..+..++ +|+.+++++|++....+..+..+ ++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 46789999998777777777779999999999995544 5677888 89999999999996666666554 89
Q ss_pred CcEEEcccceeeeecchhhh----cc-CCcee
Q 034189 75 LTIFGIAGNYLSGRIPTFIA----KW-VNLYA 101 (102)
Q Consensus 75 L~~l~l~~n~~~~~~~~~~~----~l-~~L~~ 101 (102)
|+++++++|.+++..+..+. .+ ++|+.
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~ 113 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITV 113 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCE
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccE
Confidence 99999999999866655433 33 56654
No 130
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.16 E-value=1.7e-10 Score=69.74 Aligned_cols=98 Identities=12% Similarity=0.050 Sum_probs=81.1
Q ss_pred eEEEEecCCcceecCChhhcCCCCCCEEEeecccceecCChhhcCCCCCc-EEEcccceeceecChhhcCCCCCcEEEcc
Q 034189 3 SCRSNLGQNLLTGKIPPSLGRLSSLQTLSLLENGLNGTLPPELGKLSNLQ-KLRLQSNNLRGDLPKDYENLKNLTIFGIA 81 (102)
Q Consensus 3 ~~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~L~-~l~l~~n~~~~~~p~~~~~~~~L~~l~l~ 81 (102)
.+++++++|.++...+..|.++.+|+.+++..| ++...+..|..+.+|+ .+++.. .+....+.+|.++++|+.+++.
T Consensus 228 L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~ 305 (329)
T 3sb4_A 228 LVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLAT 305 (329)
T ss_dssp CCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEEC
T ss_pred CeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeC
Confidence 467899999999555567999999999999998 6634455689999999 999988 6664557889999999999999
Q ss_pred cceeeeecchhhhccCCceeC
Q 034189 82 GNYLSGRIPTFIAKWVNLYAL 102 (102)
Q Consensus 82 ~n~~~~~~~~~~~~l~~L~~l 102 (102)
.|.+....+..|.++++|+.+
T Consensus 306 ~n~i~~I~~~aF~~~~~L~~l 326 (329)
T 3sb4_A 306 GDKITTLGDELFGNGVPSKLI 326 (329)
T ss_dssp SSCCCEECTTTTCTTCCCCEE
T ss_pred CCccCccchhhhcCCcchhhh
Confidence 999986666789999998753
No 131
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.14 E-value=2.3e-10 Score=69.71 Aligned_cols=94 Identities=19% Similarity=0.187 Sum_probs=75.3
Q ss_pred EEEecCCcceecCChhhcCCCCCCEEEeecccceecCCh-hhcCCCCCcEEEcccceeceecC-hhhcCCCCCcE-EEcc
Q 034189 5 RSNLGQNLLTGKIPPSLGRLSSLQTLSLLENGLNGTLPP-ELGKLSNLQKLRLQSNNLRGDLP-KDYENLKNLTI-FGIA 81 (102)
Q Consensus 5 ~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~-~~~~~~~L~~l~l~~n~~~~~~p-~~~~~~~~L~~-l~l~ 81 (102)
+++.++++++ .+|..+ ..+++.|++++|+++ .+|. .+..+++|+.+++++|++...+| ..|.+++++.. +.+.
T Consensus 13 ~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~-~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 13 VFLCQESKVT-EIPSDL--PRNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp EEEEESTTCC-SCCTTC--CTTCSEEEEESCCCS-EECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred EEEecCCCCC-ccCcCc--CCCCCEEEccCCcCC-CcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 5778889999 788765 368999999999999 5554 68999999999999999765555 46788888775 5566
Q ss_pred cceeeeecchhhhccCCceeC
Q 034189 82 GNYLSGRIPTFIAKWVNLYAL 102 (102)
Q Consensus 82 ~n~~~~~~~~~~~~l~~L~~l 102 (102)
.|.+....++.|..+++|+.|
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L 109 (350)
T 4ay9_X 89 ANNLLYINPEAFQNLPNLQYL 109 (350)
T ss_dssp ETTCCEECTTSBCCCTTCCEE
T ss_pred CCcccccCchhhhhccccccc
Confidence 788986667888888888753
No 132
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.11 E-value=1.9e-11 Score=75.16 Aligned_cols=99 Identities=24% Similarity=0.323 Sum_probs=71.0
Q ss_pred eEEEEecCCcce-ecCC---hhhcCCCCCCEEEeecccceec-----CChhhcCCCCCcEEEcccceec----eecChhh
Q 034189 3 SCRSNLGQNLLT-GKIP---PSLGRLSSLQTLSLLENGLNGT-----LPPELGKLSNLQKLRLQSNNLR----GDLPKDY 69 (102)
Q Consensus 3 ~~~L~l~~n~~~-~~~~---~~~~~l~~L~~l~l~~n~~~~~-----~~~~~~~~~~L~~l~l~~n~~~----~~~p~~~ 69 (102)
.++|++++|.++ ..++ ..+..+++|+.+++++|.++.. .+..+..+++|+.+++++|+++ ..+|..+
T Consensus 161 L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l 240 (386)
T 2ca6_A 161 LRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIAL 240 (386)
T ss_dssp CCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHG
T ss_pred CcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHH
Confidence 457888888886 2334 3566788889999988888732 2325677888999999998885 3567777
Q ss_pred cCCCCCcEEEcccceeeee----cchhhhc--cCCcee
Q 034189 70 ENLKNLTIFGIAGNYLSGR----IPTFIAK--WVNLYA 101 (102)
Q Consensus 70 ~~~~~L~~l~l~~n~~~~~----~~~~~~~--l~~L~~ 101 (102)
..+++|+.|++++|.+++. ++..+.. +++|+.
T Consensus 241 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~ 278 (386)
T 2ca6_A 241 KSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQT 278 (386)
T ss_dssp GGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCE
T ss_pred ccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEE
Confidence 8888899999999888755 3455432 666654
No 133
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.09 E-value=4.6e-10 Score=73.14 Aligned_cols=69 Identities=28% Similarity=0.352 Sum_probs=56.0
Q ss_pred CCCCEEEeecccceecCChhhcCCCCCcEEEcccceeceecChhhcCCCCCcEEEcccceeeeecchhhhccCCceeC
Q 034189 25 SSLQTLSLLENGLNGTLPPELGKLSNLQKLRLQSNNLRGDLPKDYENLKNLTIFGIAGNYLSGRIPTFIAKWVNLYAL 102 (102)
Q Consensus 25 ~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~~~~~~~l~~L~~l 102 (102)
++|+.+++++|.++ .+| ..+++|+.+++++|+++ .+|. .+++|+.|++++|.++ .+|..+.++++|+.|
T Consensus 221 ~~L~~L~Ls~N~L~-~lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L 289 (622)
T 3g06_A 221 SGLKELIVSGNRLT-SLP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTV 289 (622)
T ss_dssp TTCCEEECCSSCCS-CCC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEE
T ss_pred CCCCEEEccCCccC-cCC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEE
Confidence 67888888888887 455 35578899999999888 5665 5688999999999999 788889999888753
No 134
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.03 E-value=2.9e-10 Score=71.53 Aligned_cols=59 Identities=32% Similarity=0.444 Sum_probs=20.7
Q ss_pred CCCCEEEeecccceecCChhhcCCCCCcEEEcccceece--ecChhhcCC-------------CCCcEEEcccceeee
Q 034189 25 SSLQTLSLLENGLNGTLPPELGKLSNLQKLRLQSNNLRG--DLPKDYENL-------------KNLTIFGIAGNYLSG 87 (102)
Q Consensus 25 ~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~--~~p~~~~~~-------------~~L~~l~l~~n~~~~ 87 (102)
++|+.+++++|.++ .+|. .+++|+.+++++|++.+ .+|..+..+ ++|+.+++++|.+++
T Consensus 337 ~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~ 410 (454)
T 1jl5_A 337 PRLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLRE 410 (454)
T ss_dssp TTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC------------------------
T ss_pred CcCCEEECCCCccc-cccc---hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCc
Confidence 44555555555554 3333 23455555555555554 334444333 445555555555553
No 135
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.03 E-value=7.1e-10 Score=69.81 Aligned_cols=75 Identities=29% Similarity=0.370 Sum_probs=41.1
Q ss_pred EEEEecCCcceecCChhhcCCCCCCEEEeecccceecCChhhcCCCCCcEEEcccceeceecChhhcCCCCCcEEEcccc
Q 034189 4 CRSNLGQNLLTGKIPPSLGRLSSLQTLSLLENGLNGTLPPELGKLSNLQKLRLQSNNLRGDLPKDYENLKNLTIFGIAGN 83 (102)
Q Consensus 4 ~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~p~~~~~~~~L~~l~l~~n 83 (102)
++|++++|.++ .+| .+..+++|+.+++++|.++ .+|.. ..+|+++++++|++. ..| .+..+++|+.+++++|
T Consensus 134 ~~L~L~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~-~lp~~---~~~L~~L~L~~n~l~-~l~-~~~~l~~L~~L~l~~N 205 (454)
T 1jl5_A 134 EYLGVSNNQLE-KLP-ELQNSSFLKIIDVDNNSLK-KLPDL---PPSLEFIAAGNNQLE-ELP-ELQNLPFLTAIYADNN 205 (454)
T ss_dssp CEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSS
T ss_pred CEEECcCCCCC-CCc-ccCCCCCCCEEECCCCcCc-ccCCC---cccccEEECcCCcCC-cCc-cccCCCCCCEEECCCC
Confidence 45666666666 355 3666666666666666666 33432 135556666665555 234 3455555555555555
Q ss_pred eee
Q 034189 84 YLS 86 (102)
Q Consensus 84 ~~~ 86 (102)
.+.
T Consensus 206 ~l~ 208 (454)
T 1jl5_A 206 SLK 208 (454)
T ss_dssp CCS
T ss_pred cCC
Confidence 444
No 136
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.00 E-value=2.3e-11 Score=75.98 Aligned_cols=37 Identities=19% Similarity=0.231 Sum_probs=15.3
Q ss_pred CCcEEEcccceece----ecChhhcCCCCCcEEEcccceee
Q 034189 50 NLQKLRLQSNNLRG----DLPKDYENLKNLTIFGIAGNYLS 86 (102)
Q Consensus 50 ~L~~l~l~~n~~~~----~~p~~~~~~~~L~~l~l~~n~~~ 86 (102)
.|+.+++++|+++. .+|..+..+++|+++++++|.++
T Consensus 371 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~ 411 (461)
T 1z7x_W 371 VLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLG 411 (461)
T ss_dssp CCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCC
T ss_pred ceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCC
Confidence 44444444444432 22333333444444444444443
No 137
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.96 E-value=8e-11 Score=73.57 Aligned_cols=100 Identities=16% Similarity=0.098 Sum_probs=75.1
Q ss_pred eEEEEecCCcceecCChhhc-----CCCCCCEEEeecccceec----CChhhcCCCCCcEEEcccceeceecChhhcC--
Q 034189 3 SCRSNLGQNLLTGKIPPSLG-----RLSSLQTLSLLENGLNGT----LPPELGKLSNLQKLRLQSNNLRGDLPKDYEN-- 71 (102)
Q Consensus 3 ~~~L~l~~n~~~~~~~~~~~-----~l~~L~~l~l~~n~~~~~----~~~~~~~~~~L~~l~l~~n~~~~~~p~~~~~-- 71 (102)
.++|++++|.++...+..+. ..++|+.+++++|.+++. ++..+..+++|+.+++++|++....+..+..
T Consensus 286 L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l 365 (461)
T 1z7x_W 286 LKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGL 365 (461)
T ss_dssp CCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHH
T ss_pred cceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHH
Confidence 46899999998744333333 236999999999999854 3455667899999999999988554444432
Q ss_pred ---CCCCcEEEcccceeee----ecchhhhccCCceeC
Q 034189 72 ---LKNLTIFGIAGNYLSG----RIPTFIAKWVNLYAL 102 (102)
Q Consensus 72 ---~~~L~~l~l~~n~~~~----~~~~~~~~l~~L~~l 102 (102)
.++|+++++++|.+++ .++..+..+++|+.|
T Consensus 366 ~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L 403 (461)
T 1z7x_W 366 GQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLREL 403 (461)
T ss_dssp TSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEE
T ss_pred cCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEE
Confidence 6799999999999986 667777778887753
No 138
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.91 E-value=2.3e-10 Score=67.64 Aligned_cols=78 Identities=23% Similarity=0.392 Sum_probs=58.9
Q ss_pred cCCCCCCEEEeeccccee--cCChhhcCCCCCcEEEcccceeceecChhhcCCC--CCcEEEcccceeeeecc-------
Q 034189 22 GRLSSLQTLSLLENGLNG--TLPPELGKLSNLQKLRLQSNNLRGDLPKDYENLK--NLTIFGIAGNYLSGRIP------- 90 (102)
Q Consensus 22 ~~l~~L~~l~l~~n~~~~--~~~~~~~~~~~L~~l~l~~n~~~~~~p~~~~~~~--~L~~l~l~~n~~~~~~~------- 90 (102)
..+++|+.|++++|.+++ .++..+..+++|+.|++++|++.+. ..+..+. +|+.|++.+|.+.+.+|
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 457899999999999995 3445667899999999999999843 2233333 89999999999986544
Q ss_pred hhhhccCCcee
Q 034189 91 TFIAKWVNLYA 101 (102)
Q Consensus 91 ~~~~~l~~L~~ 101 (102)
..+..+++|+.
T Consensus 245 ~il~~~P~L~~ 255 (267)
T 3rw6_A 245 AIRERFPKLLR 255 (267)
T ss_dssp HHHHHCTTCCE
T ss_pred HHHHHCcccCe
Confidence 24566777764
No 139
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.82 E-value=1.1e-09 Score=67.44 Aligned_cols=63 Identities=21% Similarity=0.217 Sum_probs=30.6
Q ss_pred CCCCCEEEeecccceec----CChhhcCCCCCcEEEcccceeceec----ChhhcCCCCCcEEEcccceee
Q 034189 24 LSSLQTLSLLENGLNGT----LPPELGKLSNLQKLRLQSNNLRGDL----PKDYENLKNLTIFGIAGNYLS 86 (102)
Q Consensus 24 l~~L~~l~l~~n~~~~~----~~~~~~~~~~L~~l~l~~n~~~~~~----p~~~~~~~~L~~l~l~~n~~~ 86 (102)
.++|+.+++++|.++.. ++..+...++|+.+++++|.+.... ...+...++|+.|++++|.++
T Consensus 154 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~ 224 (372)
T 3un9_A 154 QCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAG 224 (372)
T ss_dssp TCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCC
T ss_pred CCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCC
Confidence 45555566655555421 1222344555556666655554211 223344455555555555554
No 140
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.67 E-value=2e-08 Score=59.39 Aligned_cols=77 Identities=22% Similarity=0.227 Sum_probs=58.6
Q ss_pred eEEEEecCCccee--cCChhhcCCCCCCEEEeecccceecC-ChhhcCCCCCcEEEcccceeceecC-------hhhcCC
Q 034189 3 SCRSNLGQNLLTG--KIPPSLGRLSSLQTLSLLENGLNGTL-PPELGKLSNLQKLRLQSNNLRGDLP-------KDYENL 72 (102)
Q Consensus 3 ~~~L~l~~n~~~~--~~~~~~~~l~~L~~l~l~~n~~~~~~-~~~~~~~~~L~~l~l~~n~~~~~~p-------~~~~~~ 72 (102)
.+.|++++|.+++ .++..+..+++|+.|++++|.+++.. ...+..+ .|+.+++.+|.+.+..| ..+..+
T Consensus 172 L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~~il~~~ 250 (267)
T 3rw6_A 172 LLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCDTFRDQSTYISAIRERF 250 (267)
T ss_dssp CCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGGGCSSHHHHHHHHHHHC
T ss_pred CCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCccccCcchhHHHHHHHHC
Confidence 4689999999996 34566778999999999999999531 1223344 89999999999886555 235678
Q ss_pred CCCcEEEc
Q 034189 73 KNLTIFGI 80 (102)
Q Consensus 73 ~~L~~l~l 80 (102)
++|+.||=
T Consensus 251 P~L~~LDg 258 (267)
T 3rw6_A 251 PKLLRLDG 258 (267)
T ss_dssp TTCCEESS
T ss_pred cccCeECC
Confidence 99987753
No 141
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.67 E-value=1.9e-08 Score=56.13 Aligned_cols=84 Identities=10% Similarity=0.074 Sum_probs=61.7
Q ss_pred eEEEEecCCcceecCChhhcCCCCCCEEEeeccc-ceecCChhhcCC----CCCcEEEcccc-eeceecChhhcCCCCCc
Q 034189 3 SCRSNLGQNLLTGKIPPSLGRLSSLQTLSLLENG-LNGTLPPELGKL----SNLQKLRLQSN-NLRGDLPKDYENLKNLT 76 (102)
Q Consensus 3 ~~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~-~~~~~~~~~~~~----~~L~~l~l~~n-~~~~~~p~~~~~~~~L~ 76 (102)
.+.|+++++.++...-..+..+++|+.|++++|. +++..-..+..+ ++|+.+++++| +++...-..+..+++|+
T Consensus 63 L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~ 142 (176)
T 3e4g_A 63 IQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNLK 142 (176)
T ss_dssp EEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTCC
T ss_pred EeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCCC
Confidence 5789999998875444557789999999999885 664444445543 46899999987 47755445567789999
Q ss_pred EEEcccce-ee
Q 034189 77 IFGIAGNY-LS 86 (102)
Q Consensus 77 ~l~l~~n~-~~ 86 (102)
+|+++++. ++
T Consensus 143 ~L~L~~c~~It 153 (176)
T 3e4g_A 143 YLFLSDLPGVK 153 (176)
T ss_dssp EEEEESCTTCC
T ss_pred EEECCCCCCCC
Confidence 99998874 54
No 142
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.66 E-value=3.1e-09 Score=65.46 Aligned_cols=93 Identities=24% Similarity=0.251 Sum_probs=69.4
Q ss_pred eEEEEecCCcceec----CChhhcCCCCCCEEEeecccceecC----ChhhcCCCCCcEEEcccceecee----cChhhc
Q 034189 3 SCRSNLGQNLLTGK----IPPSLGRLSSLQTLSLLENGLNGTL----PPELGKLSNLQKLRLQSNNLRGD----LPKDYE 70 (102)
Q Consensus 3 ~~~L~l~~n~~~~~----~~~~~~~l~~L~~l~l~~n~~~~~~----~~~~~~~~~L~~l~l~~n~~~~~----~p~~~~ 70 (102)
.++|++++|.++.. ++..+...++|+.+++++|.+++.. +..+...++|+.+++++|.++.. +...+.
T Consensus 157 L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~ 236 (372)
T 3un9_A 157 ITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAR 236 (372)
T ss_dssp CCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHH
T ss_pred cceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHH
Confidence 46899999988732 3344577899999999999998532 34556678999999999998753 233445
Q ss_pred CCCCCcEEEcccceeeeecchhhhc
Q 034189 71 NLKNLTIFGIAGNYLSGRIPTFIAK 95 (102)
Q Consensus 71 ~~~~L~~l~l~~n~~~~~~~~~~~~ 95 (102)
..++|+++++++|.++......+..
T Consensus 237 ~~~~L~~L~Ls~N~i~~~g~~~L~~ 261 (372)
T 3un9_A 237 EHPSLELLHLYFNELSSEGRQVLRD 261 (372)
T ss_dssp HCSSCCEEECTTSSCCHHHHHHHHH
T ss_pred hCCCCCEEeccCCCCCHHHHHHHHH
Confidence 6789999999999998654444443
No 143
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.55 E-value=9.3e-09 Score=66.07 Aligned_cols=77 Identities=16% Similarity=0.135 Sum_probs=35.4
Q ss_pred CCCCCCEEEeecccceecC----ChhhcCCCCCcEEEcccceec----eecChhhcCCCCCcEEEcccceeeeecchhhh
Q 034189 23 RLSSLQTLSLLENGLNGTL----PPELGKLSNLQKLRLQSNNLR----GDLPKDYENLKNLTIFGIAGNYLSGRIPTFIA 94 (102)
Q Consensus 23 ~l~~L~~l~l~~n~~~~~~----~~~~~~~~~L~~l~l~~n~~~----~~~p~~~~~~~~L~~l~l~~n~~~~~~~~~~~ 94 (102)
.+++|+.+++++|.+++.. +.....+++|+.+++++|.+. ..++..+..+++|+.+++++|.+. .++..+.
T Consensus 162 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~-~l~~~~~ 240 (592)
T 3ogk_B 162 HCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEIL-ELVGFFK 240 (592)
T ss_dssp HCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGG-GGHHHHH
T ss_pred hCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHH-HHHHHHh
Confidence 3455555555555444221 112234455555555555443 122233344556666666655554 2344444
Q ss_pred ccCCce
Q 034189 95 KWVNLY 100 (102)
Q Consensus 95 ~l~~L~ 100 (102)
.+++|+
T Consensus 241 ~~~~L~ 246 (592)
T 3ogk_B 241 AAANLE 246 (592)
T ss_dssp HCTTCC
T ss_pred hhhHHH
Confidence 444443
No 144
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.54 E-value=1.6e-08 Score=56.69 Aligned_cols=86 Identities=17% Similarity=0.179 Sum_probs=55.2
Q ss_pred eEEEEecCC-cceec----CChhhcCCCCCCEEEeecccceecC----ChhhcCCCCCcEEEcccceecee----cChhh
Q 034189 3 SCRSNLGQN-LLTGK----IPPSLGRLSSLQTLSLLENGLNGTL----PPELGKLSNLQKLRLQSNNLRGD----LPKDY 69 (102)
Q Consensus 3 ~~~L~l~~n-~~~~~----~~~~~~~l~~L~~l~l~~n~~~~~~----~~~~~~~~~L~~l~l~~n~~~~~----~p~~~ 69 (102)
.++|++++| .+... +...+...++|+.|++++|.+.+.. ...+...+.|+.+++++|.+... +...+
T Consensus 38 L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L 117 (185)
T 1io0_A 38 LEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEAL 117 (185)
T ss_dssp CCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGG
T ss_pred CCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHH
Confidence 356788887 76632 2334555677888888888876422 23344556788888888877642 23445
Q ss_pred cCCCCCcEEEc--ccceeeee
Q 034189 70 ENLKNLTIFGI--AGNYLSGR 88 (102)
Q Consensus 70 ~~~~~L~~l~l--~~n~~~~~ 88 (102)
...+.|++|++ ++|.+...
T Consensus 118 ~~n~~L~~L~L~~~~N~i~~~ 138 (185)
T 1io0_A 118 QSNTSLIELRIDNQSQPLGNN 138 (185)
T ss_dssp GGCSSCCEEECCCCSSCCCHH
T ss_pred HhCCCceEEEecCCCCCCCHH
Confidence 55677888888 67777643
No 145
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.49 E-value=5.6e-07 Score=54.36 Aligned_cols=77 Identities=14% Similarity=0.125 Sum_probs=63.6
Q ss_pred CCCCCEEEeecccceecCChhhcCCCCCcEEEcccceeceecChhhcCCCCCc-EEEcccceeeeecchhhhccCCceeC
Q 034189 24 LSSLQTLSLLENGLNGTLPPELGKLSNLQKLRLQSNNLRGDLPKDYENLKNLT-IFGIAGNYLSGRIPTFIAKWVNLYAL 102 (102)
Q Consensus 24 l~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~p~~~~~~~~L~-~l~l~~n~~~~~~~~~~~~l~~L~~l 102 (102)
+++|+.++++.|.++...+..|..+.+|+.+++.+| +....+.+|.++.+|+ .++++. .+....+..|.+|++|+.+
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l 302 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV 302 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence 789999999999999443446899999999999998 6645567899999999 999988 6664556889999988753
No 146
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.47 E-value=6.5e-08 Score=53.95 Aligned_cols=79 Identities=14% Similarity=0.140 Sum_probs=60.0
Q ss_pred CCCCCEEEeecccceecCChhhcCCCCCcEEEcccce-eceecChhhcCC----CCCcEEEcccc-eeeeecchhhhccC
Q 034189 24 LSSLQTLSLLENGLNGTLPPELGKLSNLQKLRLQSNN-LRGDLPKDYENL----KNLTIFGIAGN-YLSGRIPTFIAKWV 97 (102)
Q Consensus 24 l~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~-~~~~~p~~~~~~----~~L~~l~l~~n-~~~~~~~~~~~~l~ 97 (102)
-..|+.+|++++.++...-..+..+++|+.+++++|. +++..-..+..+ ++|++|++++| .++...-..+..++
T Consensus 60 ~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~ 139 (176)
T 3e4g_A 60 KYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFR 139 (176)
T ss_dssp CCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCT
T ss_pred CceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCC
Confidence 3468999999999987666677899999999999994 664433445443 47999999987 58765556677778
Q ss_pred CceeC
Q 034189 98 NLYAL 102 (102)
Q Consensus 98 ~L~~l 102 (102)
+|+.|
T Consensus 140 ~L~~L 144 (176)
T 3e4g_A 140 NLKYL 144 (176)
T ss_dssp TCCEE
T ss_pred CCCEE
Confidence 77753
No 147
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.39 E-value=4.1e-08 Score=63.10 Aligned_cols=63 Identities=13% Similarity=0.120 Sum_probs=28.6
Q ss_pred CCCCCEEEeecccceecCChhh-cCCCCCcEEEcccceeceecCh-hhcCCCCCcEEEcccceee
Q 034189 24 LSSLQTLSLLENGLNGTLPPEL-GKLSNLQKLRLQSNNLRGDLPK-DYENLKNLTIFGIAGNYLS 86 (102)
Q Consensus 24 l~~L~~l~l~~n~~~~~~~~~~-~~~~~L~~l~l~~n~~~~~~p~-~~~~~~~L~~l~l~~n~~~ 86 (102)
+++|+.+++++|.+++.....+ ..+++|+.+++++|.++...+. ....+++|+.+++++|.++
T Consensus 455 ~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 519 (594)
T 2p1m_B 455 AKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVS 519 (594)
T ss_dssp CTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCB
T ss_pred chhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCC
Confidence 4455555555555443222222 3345555555555554322221 2233455555555555543
No 148
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.36 E-value=4e-07 Score=58.54 Aligned_cols=53 Identities=11% Similarity=-0.026 Sum_probs=27.1
Q ss_pred eEEEEecCCcce----ecCChhhcCCCCCCEEEeecccceecCChhhcCCCCCcEEEc
Q 034189 3 SCRSNLGQNLLT----GKIPPSLGRLSSLQTLSLLENGLNGTLPPELGKLSNLQKLRL 56 (102)
Q Consensus 3 ~~~L~l~~n~~~----~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l 56 (102)
.++|++++|.++ +.++..+..+++|+.+++++|.+. .++..+..+++|+.+++
T Consensus 194 L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~-~l~~~~~~~~~L~~L~l 250 (592)
T 3ogk_B 194 LEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEIL-ELVGFFKAAANLEEFCG 250 (592)
T ss_dssp CCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGG-GGHHHHHHCTTCCEEEE
T ss_pred ccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHH-HHHHHHhhhhHHHhhcc
Confidence 356667766665 122333455666777776666554 23333333344444433
No 149
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.34 E-value=2.8e-07 Score=59.23 Aligned_cols=59 Identities=17% Similarity=0.251 Sum_probs=25.0
Q ss_pred EEEEecCCcceecCChhhc-CCCCCCEEEeecc-cceec-CChhhcCCCCCcEEEcccceec
Q 034189 4 CRSNLGQNLLTGKIPPSLG-RLSSLQTLSLLEN-GLNGT-LPPELGKLSNLQKLRLQSNNLR 62 (102)
Q Consensus 4 ~~L~l~~n~~~~~~~~~~~-~l~~L~~l~l~~n-~~~~~-~~~~~~~~~~L~~l~l~~n~~~ 62 (102)
++|++++|.++...+..+. .+++|+.+++++| .++.. .+.....+++|+.+++++|.++
T Consensus 108 ~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~ 169 (594)
T 2p1m_B 108 EEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVD 169 (594)
T ss_dssp CEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEE
T ss_pred CeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccC
Confidence 3445555544433333332 3455555555544 23211 1222224455555555555544
No 150
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.18 E-value=3.3e-07 Score=51.31 Aligned_cols=85 Identities=20% Similarity=0.196 Sum_probs=64.3
Q ss_pred eEEEEecCCcceec----CChhhcCCCCCCEEEeecccceec----CChhhcCCCCCcEEEc--ccceeceec----Chh
Q 034189 3 SCRSNLGQNLLTGK----IPPSLGRLSSLQTLSLLENGLNGT----LPPELGKLSNLQKLRL--QSNNLRGDL----PKD 68 (102)
Q Consensus 3 ~~~L~l~~n~~~~~----~~~~~~~l~~L~~l~l~~n~~~~~----~~~~~~~~~~L~~l~l--~~n~~~~~~----p~~ 68 (102)
.++|++++|.+... +...+...++|+.|++++|.+++. +...+.....|+.+++ ++|.+.... ...
T Consensus 67 L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~ 146 (185)
T 1io0_A 67 VKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANM 146 (185)
T ss_dssp CCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHH
T ss_pred cCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHH
Confidence 46899999998732 234455668999999999999853 2445667788999999 889887532 234
Q ss_pred hcCCCCCcEEEcccceeee
Q 034189 69 YENLKNLTIFGIAGNYLSG 87 (102)
Q Consensus 69 ~~~~~~L~~l~l~~n~~~~ 87 (102)
+...+.|+++++++|.+..
T Consensus 147 L~~n~~L~~L~L~~n~i~~ 165 (185)
T 1io0_A 147 LEKNTTLLKFGYHFTQQGP 165 (185)
T ss_dssp HHHCSSCCEEECCCSSHHH
T ss_pred HHhCCCcCEEeccCCCCCh
Confidence 5556899999999998753
No 151
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.10 E-value=2.1e-05 Score=49.02 Aligned_cols=64 Identities=13% Similarity=0.074 Sum_probs=29.8
Q ss_pred ChhhcCCCCCCEEEeecccce-----ecCChhhcCCCCCcEEEcccceeceecChhhcCCCCCcEEEccc
Q 034189 18 PPSLGRLSSLQTLSLLENGLN-----GTLPPELGKLSNLQKLRLQSNNLRGDLPKDYENLKNLTIFGIAG 82 (102)
Q Consensus 18 ~~~~~~l~~L~~l~l~~n~~~-----~~~~~~~~~~~~L~~l~l~~n~~~~~~p~~~~~~~~L~~l~l~~ 82 (102)
...|.++.+|+.+.+..+... ...+..|..+.+|+.+++.. .+......+|.++.+|+.+.+..
T Consensus 264 ~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~ 332 (401)
T 4fdw_A 264 SRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPA 332 (401)
T ss_dssp TTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECT
T ss_pred hhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECc
Confidence 344555556666655554432 11222344555555555542 23323334455555555555543
No 152
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=97.93 E-value=5.6e-05 Score=47.12 Aligned_cols=92 Identities=10% Similarity=0.033 Sum_probs=64.9
Q ss_pred eEEEEecCCcce-----ecCChhhcCCCCCCEEEeecccceecCChhhcCCCCCcEEEcccceeceecChhhcCCCCCcE
Q 034189 3 SCRSNLGQNLLT-----GKIPPSLGRLSSLQTLSLLENGLNGTLPPELGKLSNLQKLRLQSNNLRGDLPKDYENLKNLTI 77 (102)
Q Consensus 3 ~~~L~l~~n~~~-----~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~p~~~~~~~~L~~ 77 (102)
++++.+.+|.+. ...+..|.++.+|+.+.+. +.++......|..+.+|+.+++..+ +......+|.++ +|+.
T Consensus 273 L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~ 349 (401)
T 4fdw_A 273 LAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKE 349 (401)
T ss_dssp CCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCE
T ss_pred CCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCE
Confidence 345667666553 2445568899999999998 4466344456888899999999655 554556788888 9999
Q ss_pred EEcccceeeeecchhhhccC
Q 034189 78 FGIAGNYLSGRIPTFIAKWV 97 (102)
Q Consensus 78 l~l~~n~~~~~~~~~~~~l~ 97 (102)
+.+.+|.........|..++
T Consensus 350 l~l~~n~~~~l~~~~F~~~~ 369 (401)
T 4fdw_A 350 VKVEGTTPPQVFEKVWYGFP 369 (401)
T ss_dssp EEECCSSCCBCCCSSCCCSC
T ss_pred EEEcCCCCcccccccccCCC
Confidence 99998877644445555553
No 153
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.86 E-value=0.00025 Score=43.48 Aligned_cols=78 Identities=15% Similarity=0.125 Sum_probs=36.8
Q ss_pred hcCCCCCCEEEeecccceecCChhhcCCCCCcEEEcccceeceecChhhcCCCCCcEEEcccceeeeecchhhhccCCce
Q 034189 21 LGRLSSLQTLSLLENGLNGTLPPELGKLSNLQKLRLQSNNLRGDLPKDYENLKNLTIFGIAGNYLSGRIPTFIAKWVNLY 100 (102)
Q Consensus 21 ~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~~~~~~~l~~L~ 100 (102)
|..+..++.+.+..+ ++......+..+.+|+.+.+..+.+......+|.++.+|+.+.+..+ +......+|.++.+|+
T Consensus 259 F~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~ 336 (379)
T 4h09_A 259 LQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALS 336 (379)
T ss_dssp TTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCC
T ss_pred cceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCC
Confidence 444444555544322 22121223455556666665555444333445556666666666543 3322234455555554
No 154
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.84 E-value=4.7e-06 Score=51.32 Aligned_cols=40 Identities=18% Similarity=0.228 Sum_probs=18.3
Q ss_pred CCCCcEEEcccceeceecChhhc---CCCCCcEEEcccceeee
Q 034189 48 LSNLQKLRLQSNNLRGDLPKDYE---NLKNLTIFGIAGNYLSG 87 (102)
Q Consensus 48 ~~~L~~l~l~~n~~~~~~p~~~~---~~~~L~~l~l~~n~~~~ 87 (102)
+++|+.+++.+|.+....+..+. .+++|++|+++.|.+..
T Consensus 251 ~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d 293 (362)
T 2ra8_A 251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTD 293 (362)
T ss_dssp CTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBH
T ss_pred CCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCCh
Confidence 45555555555544422211111 24455555555555543
No 155
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.73 E-value=0.00015 Score=44.87 Aligned_cols=80 Identities=10% Similarity=0.051 Sum_probs=45.3
Q ss_pred ChhhcCCCCCCEEEeecccceecCChhhcCCCCCcEEEcccceeceecChhhcCCCCCcEEEcccceeeeecchhhhccC
Q 034189 18 PPSLGRLSSLQTLSLLENGLNGTLPPELGKLSNLQKLRLQSNNLRGDLPKDYENLKNLTIFGIAGNYLSGRIPTFIAKWV 97 (102)
Q Consensus 18 ~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~~~~~~~l~ 97 (102)
...|.++.+|+.+++..+ ++......|..+.+|+.+++..+ +......+|.++.+|+.++++.+- . .+...|.+++
T Consensus 313 ~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~~-~-~~~~~F~~c~ 388 (394)
T 4fs7_A 313 EEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKRL-E-QYRYDFEDTT 388 (394)
T ss_dssp TTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGGG-G-GGGGGBCTTC
T ss_pred hhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCCC-E-EhhheecCCC
Confidence 344666677777766533 44222334666777777776655 443344567777777777776442 2 2234566666
Q ss_pred Ccee
Q 034189 98 NLYA 101 (102)
Q Consensus 98 ~L~~ 101 (102)
+|+.
T Consensus 389 ~L~~ 392 (394)
T 4fs7_A 389 KFKW 392 (394)
T ss_dssp EEEE
T ss_pred CCcE
Confidence 6653
No 156
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.69 E-value=0.00053 Score=42.38 Aligned_cols=78 Identities=9% Similarity=0.135 Sum_probs=39.7
Q ss_pred hcCCCCCCEEEeecccceecCChhhcCCCCCcEEEcccceeceecChhhcCCCCCcEEEcccceeeeecchhhhccCCce
Q 034189 21 LGRLSSLQTLSLLENGLNGTLPPELGKLSNLQKLRLQSNNLRGDLPKDYENLKNLTIFGIAGNYLSGRIPTFIAKWVNLY 100 (102)
Q Consensus 21 ~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~~~~~~~l~~L~ 100 (102)
|.++..|+.+.+. +.++......|..+.+|+.+++..+ ++.....+|.++.+|+.+.+..+ ++......|.+|.+|+
T Consensus 284 F~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~ 360 (394)
T 4gt6_A 284 FMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALN 360 (394)
T ss_dssp TTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCC
T ss_pred cccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCC
Confidence 4445555555553 2233122223556666666666543 33233455666666666666543 3323344566666665
Q ss_pred e
Q 034189 101 A 101 (102)
Q Consensus 101 ~ 101 (102)
.
T Consensus 361 ~ 361 (394)
T 4gt6_A 361 N 361 (394)
T ss_dssp E
T ss_pred E
Confidence 3
No 157
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.65 E-value=0.00013 Score=38.62 Aligned_cols=55 Identities=31% Similarity=0.440 Sum_probs=34.1
Q ss_pred EEEecCCcce-ecCChhhcCCCCCCEEEeecccceecCCh-hhcCCCCCcEEEcccceec
Q 034189 5 RSNLGQNLLT-GKIPPSLGRLSSLQTLSLLENGLNGTLPP-ELGKLSNLQKLRLQSNNLR 62 (102)
Q Consensus 5 ~L~l~~n~~~-~~~~~~~~~l~~L~~l~l~~n~~~~~~~~-~~~~~~~L~~l~l~~n~~~ 62 (102)
.++.+++.++ ..+|..+ -..++.|++++|.++ .++. .+..+++|+.+++.+|.+.
T Consensus 12 ~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~-~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLT-ALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCS-SCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCC--CcCCCEEECCCCcCC-ccChhhhhhccccCEEEecCCCee
Confidence 4566666655 2344332 235777778888777 4443 4666777777777777654
No 158
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.46 E-value=0.0012 Score=40.46 Aligned_cols=80 Identities=11% Similarity=0.022 Sum_probs=58.8
Q ss_pred CChhhcCCCCCCEEEeecccceecCChhhcCCCCCcEEEcccceeceecChhhcCCCCCcEEEcccceeeeecchhhhcc
Q 034189 17 IPPSLGRLSSLQTLSLLENGLNGTLPPELGKLSNLQKLRLQSNNLRGDLPKDYENLKNLTIFGIAGNYLSGRIPTFIAKW 96 (102)
Q Consensus 17 ~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~~~~~~~l 96 (102)
....|.++.+|+.+.+..+.++......|..+.+|+.+++..+ ++.....+|.++.+|+.+.+..+ ++.....+|.++
T Consensus 278 ~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c 355 (379)
T 4h09_A 278 PYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGS 355 (379)
T ss_dssp CTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTS
T ss_pred cccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCC
Confidence 3446888999999999988887444456889999999999755 55344678999999999988765 443444567665
Q ss_pred CC
Q 034189 97 VN 98 (102)
Q Consensus 97 ~~ 98 (102)
..
T Consensus 356 ~~ 357 (379)
T 4h09_A 356 SI 357 (379)
T ss_dssp SC
T ss_pred CC
Confidence 43
No 159
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.42 E-value=2.7e-05 Score=47.98 Aligned_cols=67 Identities=18% Similarity=0.339 Sum_probs=49.5
Q ss_pred CCCCCCEEEeecccceecCChhh---cCCCCCcEEEcccceeceec----ChhhcCCCCCcEEEcccceeeeec
Q 034189 23 RLSSLQTLSLLENGLNGTLPPEL---GKLSNLQKLRLQSNNLRGDL----PKDYENLKNLTIFGIAGNYLSGRI 89 (102)
Q Consensus 23 ~l~~L~~l~l~~n~~~~~~~~~~---~~~~~L~~l~l~~n~~~~~~----p~~~~~~~~L~~l~l~~n~~~~~~ 89 (102)
.+++|+.|++.+|.+.+..+..+ ..++.|+.++++.|.+.+.. +..+..+++|+.|+++.|.++...
T Consensus 250 ~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~ 323 (362)
T 2ra8_A 250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEM 323 (362)
T ss_dssp TCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHH
T ss_pred CCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHH
Confidence 46889999999888874333322 35789999999999988532 233355789999999999887543
No 160
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.41 E-value=0.0004 Score=36.74 Aligned_cols=56 Identities=23% Similarity=0.235 Sum_probs=39.0
Q ss_pred EEEeecccce-ecCChhhcCCCCCcEEEcccceeceecChhhcCCCCCcEEEcccceee
Q 034189 29 TLSLLENGLN-GTLPPELGKLSNLQKLRLQSNNLRGDLPKDYENLKNLTIFGIAGNYLS 86 (102)
Q Consensus 29 ~l~l~~n~~~-~~~~~~~~~~~~L~~l~l~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~ 86 (102)
.++.+++.++ ..+|.. ...+++.|++++|+++..-+..|..+++|+.+++.+|.+.
T Consensus 12 ~v~Cs~~~L~~~~vP~~--lp~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTA--FPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSC--CCTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCC--CCcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 5666666665 244543 2236889999999988444456788889999999888763
No 161
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.33 E-value=0.00096 Score=41.24 Aligned_cols=79 Identities=14% Similarity=0.090 Sum_probs=56.1
Q ss_pred hhcCCCCCCEEEeecccceecCChhhcCCCCCcEEEcccceeceecChhhcCCCCCcEEEcccceeeeecchhhhccCCc
Q 034189 20 SLGRLSSLQTLSLLENGLNGTLPPELGKLSNLQKLRLQSNNLRGDLPKDYENLKNLTIFGIAGNYLSGRIPTFIAKWVNL 99 (102)
Q Consensus 20 ~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~~~~~~~l~~L 99 (102)
.|..+.+|+.+.+..+ ++......|..+.+|+.+++..+ ++.....+|.++.+|+.+.+..+ +......+|.++.+|
T Consensus 292 ~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L 368 (394)
T 4fs7_A 292 TFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINL 368 (394)
T ss_dssp TTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTC
T ss_pred cccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCC
Confidence 3566777888777654 44233445778889999988654 55344678889999999999876 553555678888888
Q ss_pred ee
Q 034189 100 YA 101 (102)
Q Consensus 100 ~~ 101 (102)
+.
T Consensus 369 ~~ 370 (394)
T 4fs7_A 369 KK 370 (394)
T ss_dssp CE
T ss_pred CE
Confidence 64
No 162
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=96.98 E-value=0.0068 Score=37.46 Aligned_cols=81 Identities=10% Similarity=0.087 Sum_probs=59.3
Q ss_pred ChhhcCCCCCCEEEeecccceecCChhhcCCCCCcEEEcccceeceecChhhcCCCCCcEEEcccceeeeecchhhhccC
Q 034189 18 PPSLGRLSSLQTLSLLENGLNGTLPPELGKLSNLQKLRLQSNNLRGDLPKDYENLKNLTIFGIAGNYLSGRIPTFIAKWV 97 (102)
Q Consensus 18 ~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~~~~~~~l~ 97 (102)
...|..+..|+.+.+..+..+ .....+..+..|+.+.+.. .+.......|.++.+|+.+.+..+ ++......|.++.
T Consensus 258 ~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~ 334 (394)
T 4gt6_A 258 THAFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCE 334 (394)
T ss_dssp TTTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCT
T ss_pred cceeeecccccEEecccccce-ecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCC
Confidence 345778889999988766554 4445678889999998864 344344567899999999999865 4434456788888
Q ss_pred Ccee
Q 034189 98 NLYA 101 (102)
Q Consensus 98 ~L~~ 101 (102)
+|+.
T Consensus 335 ~L~~ 338 (394)
T 4gt6_A 335 QLER 338 (394)
T ss_dssp TCCE
T ss_pred CCCE
Confidence 8875
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.92 E-value=0.00041 Score=39.34 Aligned_cols=81 Identities=12% Similarity=0.133 Sum_probs=50.6
Q ss_pred eEEEEecCC-ccee----cCChhhcCCCCCCEEEeecccceecC----ChhhcCCCCCcEEEcccceeceecC----hhh
Q 034189 3 SCRSNLGQN-LLTG----KIPPSLGRLSSLQTLSLLENGLNGTL----PPELGKLSNLQKLRLQSNNLRGDLP----KDY 69 (102)
Q Consensus 3 ~~~L~l~~n-~~~~----~~~~~~~~l~~L~~l~l~~n~~~~~~----~~~~~~~~~L~~l~l~~n~~~~~~p----~~~ 69 (102)
.++|++++| .+.. .+.+.+..-.+|+.|++++|.+.+.. .+.+..-..|+.+++++|.+....- +.+
T Consensus 43 L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL 122 (197)
T 1pgv_A 43 LKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRST 122 (197)
T ss_dssp CCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHT
T ss_pred ccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHH
Confidence 356788775 6552 12334555677888888888887432 2233455678888888888774322 233
Q ss_pred cCCCCCcEEEcccc
Q 034189 70 ENLKNLTIFGIAGN 83 (102)
Q Consensus 70 ~~~~~L~~l~l~~n 83 (102)
..-..|+.|++++|
T Consensus 123 ~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 123 LVTQSIVEFKADNQ 136 (197)
T ss_dssp TTTCCCSEEECCCC
T ss_pred hhCCceeEEECCCC
Confidence 44466888888754
No 164
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.37 E-value=0.0015 Score=37.01 Aligned_cols=69 Identities=12% Similarity=0.192 Sum_probs=50.7
Q ss_pred hcCCCCCCEEEeecc-cceec----CChhhcCCCCCcEEEcccceeceec----ChhhcCCCCCcEEEcccceeeeec
Q 034189 21 LGRLSSLQTLSLLEN-GLNGT----LPPELGKLSNLQKLRLQSNNLRGDL----PKDYENLKNLTIFGIAGNYLSGRI 89 (102)
Q Consensus 21 ~~~l~~L~~l~l~~n-~~~~~----~~~~~~~~~~L~~l~l~~n~~~~~~----p~~~~~~~~L~~l~l~~n~~~~~~ 89 (102)
...-++|+.++++.+ .+... +.+.+..-..|+.+++++|++.... -+.+..-..|+.|+++.|.+....
T Consensus 37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~G 114 (197)
T 1pgv_A 37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPEL 114 (197)
T ss_dssp HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHH
T ss_pred HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHH
Confidence 344578999999985 77642 3445667788999999999988432 233445688999999999997643
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=73.24 E-value=6.9 Score=19.41 Aligned_cols=49 Identities=12% Similarity=0.062 Sum_probs=33.9
Q ss_pred CCcceecCChhhcCCCCCCEEEeecccceecCChhhcCCCCCcEEEcccc
Q 034189 10 QNLLTGKIPPSLGRLSSLQTLSLLENGLNGTLPPELGKLSNLQKLRLQSN 59 (102)
Q Consensus 10 ~n~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n 59 (102)
+..++..-...|.++.+|+.+.+..+--. .....|..+.+|+.+.+...
T Consensus 5 g~~vt~I~~~aF~~c~~L~~i~iP~~v~~-Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 5 GEPVVGMDKSLFAGNTVIREITVQPNIGL-LYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCCCCSSCSCTTTTCTTCCCEEECTTSSC-CCTTSSTTCTTCCCEEECCS
T ss_pred CCccCEecHHHhcCCCCCcEEEcCCchhe-EcHHHHhccCCccEEEEcCC
Confidence 44556444456888999999988765333 33446888889988887654
Done!