Query 034191
Match_columns 102
No_of_seqs 106 out of 108
Neff 4.6
Searched_HMMs 13730
Date Mon Mar 25 18:26:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034191.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/034191hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1j20a1 c.26.2.1 (A:1-165) Arg 9.2 57 0.0041 18.4 1.2 8 84-91 156-163 (165)
2 d1q60a_ d.288.1.1 (A:) General 6.1 65 0.0048 19.9 0.4 33 7-42 1-33 (99)
3 d2ah2a1 b.29.1.15 (A:409-633) 5.2 77 0.0056 22.1 0.3 20 74-96 72-91 (225)
4 d2ckca1 d.76.2.1 (A:2563-2622) 5.1 1E+02 0.0073 17.2 0.8 30 4-35 16-46 (60)
5 d2a8ea1 d.296.1.1 (A:2-211) Hy 4.3 2.2E+02 0.016 19.4 2.3 11 73-83 68-78 (210)
6 d1q1ca2 d.26.1.1 (A:141-257) F 4.2 2E+02 0.015 16.3 1.8 26 74-99 75-101 (117)
7 d1n1ta1 b.29.1.15 (A:413-634) 4.2 1E+02 0.0073 21.5 0.3 20 74-96 72-91 (222)
8 d2gqea1 g.41.11.1 (A:3-31) Nuc 4.1 1.4E+02 0.01 14.2 0.8 19 47-65 7-29 (29)
9 d1bdsa_ g.9.1.1 (A:) BDs-I def 3.9 83 0.006 16.4 -0.3 15 62-81 7-21 (43)
10 d2pxrc1 a.73.1.1 (C:1-145) HIV 3.7 2.1E+02 0.016 18.5 1.7 18 81-98 77-94 (145)
No 1
>d1j20a1 c.26.2.1 (A:1-165) Argininosuccinate synthetase, N-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=9.18 E-value=57 Score=18.38 Aligned_cols=8 Identities=25% Similarity=0.821 Sum_probs=3.1
Q ss_pred hHhhcCCC
Q 034191 84 YGKRNKVP 91 (102)
Q Consensus 84 wS~~Hkvp 91 (102)
|.++|++|
T Consensus 156 ya~~~~iP 163 (165)
T d1j20a1 156 YAEAHGIP 163 (165)
T ss_dssp HHHHTTCC
T ss_pred HHHHhCCC
Confidence 33333333
No 2
>d1q60a_ d.288.1.1 (A:) General transcription factor II-I {Mouse (Mus musculus) [TaxId: 10090]}
Probab=6.13 E-value=65 Score=19.87 Aligned_cols=33 Identities=18% Similarity=0.108 Sum_probs=24.9
Q ss_pred CCCChhHHHHhhhhhhcccccceeeehhccCCcccc
Q 034191 7 GSSGVPLIARKMKFVEDAIKFYMGVLAASEDPCLLV 42 (102)
Q Consensus 7 ~~~~~p~lA~~~~~~~m~~~pcWalMaaF~~pl~~~ 42 (102)
|+||--.|.++...+ .+ -|++=.++-+.|.++|
T Consensus 1 gssgsSgLR~~Veel-F~--~ky~eALG~~~~V~VP 33 (99)
T d1q60a_ 1 GSSGSSGLKQKVENL-FN--EKCGEALGLKQAVKVP 33 (99)
T ss_dssp CCCCCSHHHHHHHHH-HH--HHHHHHHTCSSCCCCC
T ss_pred CCCccHHHHHHHHHH-HH--HHHHHHhCCCCceecC
Confidence 466666678887777 55 6888888888888776
No 3
>d2ah2a1 b.29.1.15 (A:409-633) Trypanosoma sialidase, C-terminal domain {Parasitic flagellate protozoan (Trypanosoma cruzi) [TaxId: 5693]}
Probab=5.21 E-value=77 Score=22.15 Aligned_cols=20 Identities=25% Similarity=0.396 Sum_probs=15.6
Q ss_pred ceEEEEeChhhHhhcCCCCcccc
Q 034191 74 HCWTLFSTAAYGKRNKVPQVFLH 96 (102)
Q Consensus 74 e~WvlhAT~~wS~~Hkvpqe~~p 96 (102)
.-.||=||-. .|+||++.+|
T Consensus 72 ~~FTLVATVs---I~~vP~g~tP 91 (225)
T d2ah2a1 72 HAFTLVASVT---IHEVPKGASP 91 (225)
T ss_dssp TEEEEEEEEE---ECSCCSSEEE
T ss_pred cCEEEEEEEE---EecccCCCCc
Confidence 4577777764 5899999987
No 4
>d2ckca1 d.76.2.1 (A:2563-2622) Chromodomain-helicase-DNA-binding protein 7, CHD7 {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.09 E-value=1e+02 Score=17.21 Aligned_cols=30 Identities=7% Similarity=0.009 Sum_probs=22.9
Q ss_pred CCCCCCChhHHHHhhhhhhcccccceee-ehhc
Q 034191 4 PVVGSSGVPLIARKMKFVEDAIKFYMGV-LAAS 35 (102)
Q Consensus 4 ~~~~~~~~p~lA~~~~~~~m~~~pcWal-MaaF 35 (102)
|+++..-+|.+..+..=++.. |-|.| |-+|
T Consensus 16 k~L~G~~AP~~~~L~~WL~~h--P~y~Vd~p~~ 46 (60)
T d2ckca1 16 TRLVGEDAPKNKDLVEWLKLH--PTYTVDMPSY 46 (60)
T ss_dssp EEECTTSSCBHHHHHHHHHHC--TTEEESCCCC
T ss_pred CEecCcCCcCHHHHHHHHHHC--CCcEeecCcc
Confidence 456777888888888777777 99988 4555
No 5
>d2a8ea1 d.296.1.1 (A:2-211) Hypothetical protein YktB {Bacillus subtilis [TaxId: 1423]}
Probab=4.30 E-value=2.2e+02 Score=19.38 Aligned_cols=11 Identities=27% Similarity=0.764 Sum_probs=9.0
Q ss_pred CceEEEEeChh
Q 034191 73 AHCWTLFSTAA 83 (102)
Q Consensus 73 ~e~WvlhAT~~ 83 (102)
.++||.+|+..
T Consensus 68 ~dTWvAfs~nK 78 (210)
T d2a8ea1 68 ADSWVAFANSK 78 (210)
T ss_dssp SCEEEEEESCS
T ss_pred ccceeeecCCC
Confidence 57999999864
No 6
>d1q1ca2 d.26.1.1 (A:141-257) FKBP52, N-terminal domains {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.24 E-value=2e+02 Score=16.35 Aligned_cols=26 Identities=8% Similarity=0.038 Sum_probs=18.6
Q ss_pred ceEEEEeChhhHh-hcCCCCccccccc
Q 034191 74 HCWTLFSTAAYGK-RNKVPQVFLHINV 99 (102)
Q Consensus 74 e~WvlhAT~~wS~-~Hkvpqe~~p~~~ 99 (102)
+.|+++-.++++= ..+.|...||++-
T Consensus 75 e~~~i~ip~~~ayG~~g~~~~~Ipp~s 101 (117)
T d1q1ca2 75 EHSIVYLKPSYAFGSVGKEKFQIPPNA 101 (117)
T ss_dssp CEEEEEECGGGTTTTTCBGGGTBCTTC
T ss_pred CeEEEEECHHHhCcccCCCCCccCcCC
Confidence 5788887777753 4567877898764
No 7
>d1n1ta1 b.29.1.15 (A:413-634) Trypanosoma sialidase, C-terminal domain {Trypanosoma rangeli [TaxId: 5698]}
Probab=4.19 E-value=1e+02 Score=21.47 Aligned_cols=20 Identities=20% Similarity=0.215 Sum_probs=14.9
Q ss_pred ceEEEEeChhhHhhcCCCCcccc
Q 034191 74 HCWTLFSTAAYGKRNKVPQVFLH 96 (102)
Q Consensus 74 e~WvlhAT~~wS~~Hkvpqe~~p 96 (102)
.-.||=||= ..|+||++.+|
T Consensus 72 ~~FTLVATV---sI~~vP~g~~P 91 (222)
T d1n1ta1 72 YRFTLVATV---TIDELPKGTSP 91 (222)
T ss_dssp TEEEEEEEE---EECSCCSSEEE
T ss_pred CCeEEEEEE---EEccccCCCCc
Confidence 356777775 36999999887
No 8
>d2gqea1 g.41.11.1 (A:3-31) Nuclear pore complex protein nup153 {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.12 E-value=1.4e+02 Score=14.20 Aligned_cols=19 Identities=16% Similarity=0.181 Sum_probs=12.6
Q ss_pred cccCcee----eeeeeeeCCCCC
Q 034191 47 FKAPLLK----AVSWMENNSEKF 65 (102)
Q Consensus 47 ~dgafv~----~LsWiA~NSsKP 65 (102)
.+..+|+ ...-+|.++.||
T Consensus 7 C~~C~v~N~~~~~~CvAC~tpkP 29 (29)
T d2gqea1 7 CDTCLVQNKPEAIKCVACETPKP 29 (29)
T ss_dssp CSSSCCEECTTCSBCSSSCCBCC
T ss_pred CCceEeEChhhCCEEeecCCCCC
Confidence 4556665 566777777776
No 9
>d1bdsa_ g.9.1.1 (A:) BDs-I defensin {Sea anemone (Anemonia sulcata) [TaxId: 6108]}
Probab=3.87 E-value=83 Score=16.38 Aligned_cols=15 Identities=33% Similarity=0.262 Sum_probs=8.4
Q ss_pred CCCCCCCCCCCCceEEEEeC
Q 034191 62 SEKFFCSQSDGAHCWTLFST 81 (102)
Q Consensus 62 SsKPg~~rr~g~e~WvlhAT 81 (102)
|-||| |. +-|.|.-|
T Consensus 7 sgkpg---rg--dlwilrgt 21 (43)
T d1bdsa_ 7 SGKPG---RG--DLWILRGT 21 (43)
T ss_dssp SSCCS---CC--EEECSCSS
T ss_pred cCCCC---CC--cEEEEecc
Confidence 56888 43 34665443
No 10
>d2pxrc1 a.73.1.1 (C:1-145) HIV-1 capsid protein {Human immunodeficiency virus type 1 [TaxId: 11676]}
Probab=3.67 E-value=2.1e+02 Score=18.47 Aligned_cols=18 Identities=11% Similarity=0.060 Sum_probs=14.1
Q ss_pred ChhhHhhcCCCCcccccc
Q 034191 81 TAAYGKRNKVPQVFLHIN 98 (102)
Q Consensus 81 T~~wS~~Hkvpqe~~p~~ 98 (102)
.++|.+.|-+++--+|+.
T Consensus 77 aaewDr~HP~~~gp~ppg 94 (145)
T d2pxrc1 77 AAEWDRLHPVHAGPIAPG 94 (145)
T ss_dssp HHHHHHHSCCCSSCSSTT
T ss_pred HHHHhccCCCCCCCCCCC
Confidence 468999999888887763
Done!