BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 034193
         (101 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3IP3|A Chain A, Structure Of Putative Oxidoreductase (Tm_0425) From
          Thermotoga Maritima
 pdb|3IP3|B Chain B, Structure Of Putative Oxidoreductase (Tm_0425) From
          Thermotoga Maritima
 pdb|3IP3|C Chain C, Structure Of Putative Oxidoreductase (Tm_0425) From
          Thermotoga Maritima
 pdb|3IP3|D Chain D, Structure Of Putative Oxidoreductase (Tm_0425) From
          Thermotoga Maritima
 pdb|3IP3|E Chain E, Structure Of Putative Oxidoreductase (Tm_0425) From
          Thermotoga Maritima
 pdb|3IP3|F Chain F, Structure Of Putative Oxidoreductase (Tm_0425) From
          Thermotoga Maritima
 pdb|3IP3|G Chain G, Structure Of Putative Oxidoreductase (Tm_0425) From
          Thermotoga Maritima
 pdb|3IP3|H Chain H, Structure Of Putative Oxidoreductase (Tm_0425) From
          Thermotoga Maritima
          Length = 337

 Score = 29.3 bits (64), Expect = 0.64,   Method: Composition-based stats.
 Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 4/33 (12%)

Query: 38 YNNWWPMLTGKPHELF----VFGVNGVLFLESI 66
          YNNWW  L  +  ++     VF +NG + LE++
Sbjct: 56 YNNWWEXLEKEKPDILVINTVFSLNGKILLEAL 88


>pdb|1U0S|Y Chain Y, Chemotaxis Kinase Chea P2 Domain In Complex With
          Response Regulator Chey From The Thermophile Thermotoga
          Maritima
          Length = 118

 Score = 27.7 bits (60), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 11/30 (36%), Positives = 18/30 (60%)

Query: 58 NGVLFLESILHFVANFKYIVCPAIGQLSFM 87
          NG+  ++ I+    N K IVC A+GQ + +
Sbjct: 60 NGIDAIKEIMKIDPNAKIIVCSAMGQQAMV 89


>pdb|3TMY|A Chain A, Chey From Thermotoga Maritima (Mn-Iii)
 pdb|3TMY|B Chain B, Chey From Thermotoga Maritima (Mn-Iii)
 pdb|4TMY|A Chain A, Chey From Thermotoga Maritima (mg-iv)
 pdb|4TMY|B Chain B, Chey From Thermotoga Maritima (mg-iv)
 pdb|1TMY|A Chain A, Chey From Thermotoga Maritima (Apo-I)
 pdb|2TMY|A Chain A, Chey From Thermotoga Maritima (Apo-Ii)
          Length = 120

 Score = 27.7 bits (60), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 11/29 (37%), Positives = 17/29 (58%)

Query: 58 NGVLFLESILHFVANFKYIVCPAIGQLSF 86
          NG+  ++ I+    N K IVC A+GQ + 
Sbjct: 61 NGIDAIKEIMKIDPNAKIIVCSAMGQQAM 89


>pdb|2LLE|A Chain A, Computational Design Of An Eight-Stranded
          (BetaALPHA)-Barrel From Fragments Of Different Folds
          Length = 234

 Score = 26.9 bits (58), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 11/30 (36%), Positives = 18/30 (60%)

Query: 58 NGVLFLESILHFVANFKYIVCPAIGQLSFM 87
          NG+  ++ I+    N K IVC A+GQ + +
Sbjct: 39 NGIDAIKEIMKIDPNAKIIVCSAMGQQAMV 68


>pdb|3CWO|X Chain X, A BetaALPHA-Barrel Built By The Combination Of Fragments
          From Different Folds
          Length = 237

 Score = 26.9 bits (58), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 11/30 (36%), Positives = 18/30 (60%)

Query: 58 NGVLFLESILHFVANFKYIVCPAIGQLSFM 87
          NG+  ++ I+    N K IVC A+GQ + +
Sbjct: 39 NGIDAIKEIMKIDPNAKIIVCSAMGQQAMV 68


>pdb|2XKK|A Chain A, Crystal Structure Of Moxifloxacin, Dna, And A. Baumannii
           Topo Iv (Pare-Parc Fusion Truncate)
 pdb|2XKK|C Chain C, Crystal Structure Of Moxifloxacin, Dna, And A. Baumannii
           Topo Iv (Pare-Parc Fusion Truncate)
          Length = 767

 Score = 26.2 bits (56), Expect = 5.4,   Method: Composition-based stats.
 Identities = 14/39 (35%), Positives = 20/39 (51%)

Query: 12  LHTGKLAFLAILVSGGIVLQILACALYNNWWPMLTGKPH 50
           L  GK+  LA   S G+ +  L CAL+   +P L  + H
Sbjct: 112 LRYGKICILADADSDGLHIATLLCALFVKHFPALVEEGH 150


>pdb|2XKJ|E Chain E, Crystal Structure Of Catalytic Core Of A. Baumannii Topo
           Iv (Pare-Parc Fusion Truncate)
          Length = 767

 Score = 26.2 bits (56), Expect = 5.4,   Method: Composition-based stats.
 Identities = 14/39 (35%), Positives = 20/39 (51%)

Query: 12  LHTGKLAFLAILVSGGIVLQILACALYNNWWPMLTGKPH 50
           L  GK+  LA   S G+ +  L CAL+   +P L  + H
Sbjct: 112 LRYGKICILADADSDGLHIATLLCALFVKHFPALVEEGH 150


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.331    0.145    0.478 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,908,861
Number of Sequences: 62578
Number of extensions: 102186
Number of successful extensions: 272
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 266
Number of HSP's gapped (non-prelim): 7
length of query: 101
length of database: 14,973,337
effective HSP length: 67
effective length of query: 34
effective length of database: 10,780,611
effective search space: 366540774
effective search space used: 366540774
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 45 (21.9 bits)