BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 034193
         (101 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q9AST6|VSP55_ARATH Vacuolar protein sorting-associated protein 55 homolog
          OS=Arabidopsis thaliana GN=At1g32410 PE=2 SV=1
          Length = 140

 Score = 83.2 bits (204), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 37/46 (80%), Positives = 42/46 (91%)

Query: 1  MADLPGYMRACLHTGKLAFLAILVSGGIVLQILACALYNNWWPMLT 46
          MAD+PGY+R CL  GK+AFLAILVS GIVLQILACAL+NNWWPML+
Sbjct: 1  MADVPGYLRTCLDMGKIAFLAILVSTGIVLQILACALFNNWWPMLS 46


>sp|Q6CTT2|CFT1_KLULA Protein CFT1 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 /
           DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=CFT1 PE=3
           SV=1
          Length = 1300

 Score = 33.5 bits (75), Expect = 0.39,   Method: Composition-based stats.
 Identities = 25/86 (29%), Positives = 39/86 (45%), Gaps = 18/86 (20%)

Query: 13  HTGKLAFLAILVSGGIVLQ----------ILACALYNNWWPMLTGKPHELFVFGVNGVLF 62
           H  K  FL IL  GG + Q          +L C  +    P++TG P+  +  GVN +  
Sbjct: 739 HHKKEEFLTILTFGGEIYQYKKSTKHSGKLLKCKSH----PLITGAPNNAYPQGVNKI-- 792

Query: 63  LESILHFVANFK-YIVCPAIGQLSFM 87
            E + H+  N+  Y V    GQ+ ++
Sbjct: 793 -ERVAHYFPNYNGYSVVFITGQVPYI 817


>sp|Q9UUH1|VPS55_SCHPO Vacuolar protein sorting-associated protein 55
          OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
          GN=vps55 PE=3 SV=2
          Length = 128

 Score = 32.0 bits (71), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 14/34 (41%), Positives = 24/34 (70%)

Query: 16 KLAFLAILVSGGIVLQILACALYNNWWPMLTGKP 49
          K+  L+ +++ G +L IL+CAL+ NW+P+L   P
Sbjct: 6  KIIGLSSVLAVGFMLVILSCALFKNWYPLLIVIP 39


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.331    0.145    0.478 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,087,616
Number of Sequences: 539616
Number of extensions: 1297718
Number of successful extensions: 2812
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 2809
Number of HSP's gapped (non-prelim): 5
length of query: 101
length of database: 191,569,459
effective HSP length: 70
effective length of query: 31
effective length of database: 153,796,339
effective search space: 4767686509
effective search space used: 4767686509
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 55 (25.8 bits)