Query 034193
Match_columns 101
No_of_seqs 105 out of 173
Neff 4.3
Searched_HMMs 46136
Date Fri Mar 29 10:49:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034193.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/034193hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04133 Vps55: Vacuolar prote 100.0 7.5E-32 1.6E-36 192.0 3.6 78 17-95 1-91 (120)
2 KOG2174 Leptin receptor gene-r 100.0 3.4E-31 7.3E-36 191.5 4.1 84 9-95 1-97 (131)
3 PF05915 DUF872: Eukaryotic pr 69.5 5 0.00011 28.4 2.6 26 11-38 40-65 (115)
4 PRK02935 hypothetical protein; 58.4 14 0.00031 26.5 3.3 22 17-38 37-58 (110)
5 KOG1307 K+-dependent Ca2+/Na+ 57.7 4.6 0.0001 35.8 0.8 28 15-45 128-161 (588)
6 PF12046 DUF3529: Protein of u 51.1 16 0.00035 27.9 2.7 39 16-54 82-125 (173)
7 PF05767 Pox_A14: Poxvirus vir 42.3 27 0.00059 24.4 2.5 17 21-37 12-28 (92)
8 PF04191 PEMT: Phospholipid me 37.9 20 0.00044 23.2 1.3 23 26-48 57-80 (106)
9 PHA02898 virion envelope prote 37.5 29 0.00062 24.2 2.1 17 21-37 12-28 (92)
10 COG0841 AcrB Cation/multidrug 36.1 23 0.00051 33.2 1.9 39 16-55 849-888 (1009)
11 PF11023 DUF2614: Protein of u 34.8 57 0.0012 23.6 3.3 21 18-38 37-57 (114)
12 PHA02680 ORF090 IMV phosphoryl 34.5 36 0.00078 23.7 2.2 17 21-37 12-28 (91)
13 PF00873 ACR_tran: AcrB/AcrD/A 34.4 24 0.00052 32.2 1.6 38 17-55 863-901 (1021)
14 PRK09577 multidrug efflux prot 33.3 22 0.00048 32.9 1.3 37 18-55 867-904 (1032)
15 PHA03048 IMV membrane protein; 32.7 48 0.001 23.2 2.5 17 21-37 12-28 (93)
16 PRK09579 multidrug efflux prot 28.6 28 0.00062 32.2 1.1 37 18-55 846-883 (1017)
17 PF02038 ATP1G1_PLM_MAT8: ATP1 26.9 61 0.0013 20.2 2.1 22 9-30 11-32 (50)
18 PHA03099 epidermal growth fact 26.2 67 0.0014 23.9 2.5 26 10-37 95-120 (139)
19 TIGR00915 2A0602 The (Largely 24.7 39 0.00084 31.4 1.3 37 18-55 872-909 (1044)
20 PF09680 Tiny_TM_bacill: Prote 20.8 75 0.0016 17.1 1.4 15 22-36 8-22 (24)
21 COG1575 MenA 1,4-dihydroxy-2-n 20.2 1.2E+02 0.0027 24.9 3.2 34 9-42 89-122 (303)
No 1
>PF04133 Vps55: Vacuolar protein sorting 55 ; InterPro: IPR007262 Vps55 is involved in the secretion of the Golgi form of the soluble vacuolar carboxypeptidase Y, but not the trafficking of the membrane-bound vacuolar alkaline phosphatase. Both Vps55 and obesity receptor gene-related protein are important for functioning membrane trafficking to the vacuole/lysosome of eukaryotic cells [].
Probab=99.97 E-value=7.5e-32 Score=191.97 Aligned_cols=78 Identities=27% Similarity=0.418 Sum_probs=70.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhCCchhceecc-----cccceeee---cCCCcccCcchhHHHHHHHHHH-HHHHHHH--
Q 034193 17 LAFLAILVSGGIVLQILACALYNNWWPMLTGK-----PHELFVFG---VNGVLFLESILHFVANFKYIVC-PAIGQLS-- 85 (101)
Q Consensus 17 lI~Ls~~laiG~lLvILaCAL~~nwwPl~vv~-----PlP~~I~~---~~~df~~~~~~~~~d~~~FlT~-lvvSg~a-- 85 (101)
||+||+++|+|++|+|||||||||||||++++ |+|++|++ +++||++++++ ++|+++|+|| +||||+|
T Consensus 1 lI~Ls~~~aiG~lL~IL~CAL~~nw~PL~v~~~y~laPiP~~i~~~~~~~~~~~~~~~~-~~d~~~FlT~~~vvSg~aLP 79 (120)
T PF04133_consen 1 LIGLSFFLAIGFLLVILSCALYKNWWPLFVVLFYVLAPIPNLIARRYSSDDDFSSDSGS-CQDFGKFLTGFLVVSGFALP 79 (120)
T ss_pred CeehHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhhHHHHCCCCCCcccccCcch-HHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999999999999999998 99999994 45566666554 9999999999 9999999
Q ss_pred --HhhhccccCC
Q 034193 86 --FMHAKIISDL 95 (101)
Q Consensus 86 --LaHa~iI~~~ 95 (101)
|||+++|++.
T Consensus 80 ~VL~H~~~I~~~ 91 (120)
T PF04133_consen 80 IVLAHAGIIQWG 91 (120)
T ss_pred HHHHhhhhhHHH
Confidence 9999999874
No 2
>KOG2174 consensus Leptin receptor gene-related protein [Signal transduction mechanisms]
Probab=99.97 E-value=3.4e-31 Score=191.46 Aligned_cols=84 Identities=26% Similarity=0.449 Sum_probs=75.3
Q ss_pred hhccCchhHHHHHHHHHHHHHHHHHHHHhhCCchhceecc-----cccceee--e-cCCCcccCcchhHHHHHHHHHH-H
Q 034193 9 RACLHTGKLAFLAILVSGGIVLQILACALYNNWWPMLTGK-----PHELFVF--G-VNGVLFLESILHFVANFKYIVC-P 79 (101)
Q Consensus 9 ~a~lk~~~lI~Ls~~laiG~lLvILaCAL~~nwwPl~vv~-----PlP~~I~--~-~~~df~~~~~~~~~d~~~FlT~-l 79 (101)
|+++| ++++||+.+|+|++|+||+|||++||||||+++ |+||.++ + .++| +++++++|+|+|+|+|| +
T Consensus 1 M~~vk--~i~~Lsf~~a~G~~l~iL~CAL~~nwwPlf~~~~yvl~PiP~l~f~a~~~~~d-~~~~~~~~idlA~FlTg~~ 77 (131)
T KOG2174|consen 1 MAGVK--AIAGLSFAGAVGLLLLILGCALFRNWWPLFVILFYVLSPIPNLLFIAGRTQHD-FDATSDACIDLAKFLTGAI 77 (131)
T ss_pred CCccH--HHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHhcCCchHHhccccceec-ccccccHHHHHHHHHhcch
Confidence 57889 999999999999999999999999999999997 9998877 3 3444 45556699999999999 9
Q ss_pred HHHHHH----HhhhccccCC
Q 034193 80 AIGQLS----FMHAKIISDL 95 (101)
Q Consensus 80 vvSg~a----LaHa~iI~~~ 95 (101)
|||||| |+|+++|++.
T Consensus 78 vvs~falPiVl~ha~lI~~g 97 (131)
T KOG2174|consen 78 VVSAFALPIVLAHAGLIGWG 97 (131)
T ss_pred hhhhhhhHHHHHHhhHhhhh
Confidence 999999 9999999874
No 3
>PF05915 DUF872: Eukaryotic protein of unknown function (DUF872); InterPro: IPR008590 This entry represents several uncharacterised eukaryotic transmembrane proteins. The function of this currently unknown.
Probab=69.54 E-value=5 Score=28.43 Aligned_cols=26 Identities=27% Similarity=0.360 Sum_probs=20.5
Q ss_pred ccCchhHHHHHHHHHHHHHHHHHHHHhh
Q 034193 11 CLHTGKLAFLAILVSGGIVLQILACALY 38 (101)
Q Consensus 11 ~lk~~~lI~Ls~~laiG~lLvILaCAL~ 38 (101)
+.| .++.--+++.+|.+|++++|.++
T Consensus 40 pwK--~I~la~~Lli~G~~li~~g~l~~ 65 (115)
T PF05915_consen 40 PWK--SIALAVFLLIFGTVLIIIGLLLF 65 (115)
T ss_pred HHH--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 467 66666677889999999998873
No 4
>PRK02935 hypothetical protein; Provisional
Probab=58.42 E-value=14 Score=26.47 Aligned_cols=22 Identities=18% Similarity=0.415 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 034193 17 LAFLAILVSGGIVLQILACALY 38 (101)
Q Consensus 17 lI~Ls~~laiG~lLvILaCAL~ 38 (101)
.+..+++..+|++.++.||++|
T Consensus 37 ~~~m~ifm~~G~l~~l~S~vvY 58 (110)
T PRK02935 37 IIIMTIFMLLGFLAVIASTVVY 58 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3556677889999999999996
No 5
>KOG1307 consensus K+-dependent Ca2+/Na+ exchanger NCKX1 and related proteins [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=57.71 E-value=4.6 Score=35.78 Aligned_cols=28 Identities=32% Similarity=0.904 Sum_probs=21.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhC------Cchhce
Q 034193 15 GKLAFLAILVSGGIVLQILACALYN------NWWPML 45 (101)
Q Consensus 15 ~~lI~Ls~~laiG~lLvILaCAL~~------nwwPl~ 45 (101)
|+|++-|.+ -+|.+|--|+|+. .|||||
T Consensus 128 GTIVGSAvF---NIL~Vig~C~LFSrqvl~LtWWPLf 161 (588)
T KOG1307|consen 128 GTIVGSAVF---NILCVIGVCGLFSRQVLNLTWWPLF 161 (588)
T ss_pred eeeeehhhh---hHHHHHHHHHhhcccccccccchhh
Confidence 477776654 5888899999965 799987
No 6
>PF12046 DUF3529: Protein of unknown function (DUF3529); InterPro: IPR021919 This family of proteins is functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 176 to 190 amino acids in length.
Probab=51.07 E-value=16 Score=27.92 Aligned_cols=39 Identities=26% Similarity=0.434 Sum_probs=26.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHh---hCCchhceecc--ccccee
Q 034193 16 KLAFLAILVSGGIVLQILACAL---YNNWWPMLTGK--PHELFV 54 (101)
Q Consensus 16 ~lI~Ls~~laiG~lLvILaCAL---~~nwwPl~vv~--PlP~~I 54 (101)
--+.|++..++|+.-+-|-+.+ ...|||+..++ |+-=++
T Consensus 82 lA~fLt~l~~~Gl~cl~LVL~~l~P~~g~~~~~L~lLsPlAG~~ 125 (173)
T PF12046_consen 82 LAIFLTFLAAIGLACLGLVLSILFPDLGWWPLLLVLLSPLAGIF 125 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCcccHHHHHHHHhhhhhhh
Confidence 4578899999998877776666 34477775555 765444
No 7
>PF05767 Pox_A14: Poxvirus virion envelope protein A14; InterPro: IPR008785 This family consists of several Poxvirus virion envelope protein A14-like sequences. A14 is a component of the virion membrane and has been found to be an H1 phosphatase substrate in vivo and in vitro. A14 is hyperphosphorylated on serine residues in the absence of H1 expression [].; GO: 0019031 viral envelope
Probab=42.30 E-value=27 Score=24.36 Aligned_cols=17 Identities=41% Similarity=0.765 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHh
Q 034193 21 AILVSGGIVLQILACAL 37 (101)
Q Consensus 21 s~~laiG~lLvILaCAL 37 (101)
|-++..|++|+++||-.
T Consensus 12 S~vli~GiiLL~~aCIf 28 (92)
T PF05767_consen 12 SGVLIGGIILLIAACIF 28 (92)
T ss_pred chHHHHHHHHHHHHHHH
Confidence 35677899999999976
No 8
>PF04191 PEMT: Phospholipid methyltransferase ; InterPro: IPR007318 The Saccharomyces cerevisiae (Baker's yeast) phospholipid methyltransferase (2.1.1.16 from EC) has a broad substrate specificity of unsaturated phospholipids [].; GO: 0008170 N-methyltransferase activity, 0006644 phospholipid metabolic process
Probab=37.86 E-value=20 Score=23.15 Aligned_cols=23 Identities=30% Similarity=0.540 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHh-hCCchhceecc
Q 034193 26 GGIVLQILACAL-YNNWWPMLTGK 48 (101)
Q Consensus 26 iG~lLvILaCAL-~~nwwPl~vv~ 48 (101)
.|.++..+++++ .+|||.++..+
T Consensus 57 ~g~~l~~~G~~l~~~s~~~l~~~~ 80 (106)
T PF04191_consen 57 LGFLLILLGIALMLGSWLGLLLAV 80 (106)
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHH
Confidence 477788899999 77888755544
No 9
>PHA02898 virion envelope protein; Provisional
Probab=37.47 E-value=29 Score=24.23 Aligned_cols=17 Identities=41% Similarity=0.686 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHh
Q 034193 21 AILVSGGIVLQILACAL 37 (101)
Q Consensus 21 s~~laiG~lLvILaCAL 37 (101)
|-++..|++|+++||-.
T Consensus 12 s~vli~GIiLL~~ACIf 28 (92)
T PHA02898 12 SYVVAFGIILLIVACIC 28 (92)
T ss_pred chHHHHHHHHHHHHHHH
Confidence 35677899999999976
No 10
>COG0841 AcrB Cation/multidrug efflux pump [Defense mechanisms]
Probab=36.13 E-value=23 Score=33.16 Aligned_cols=39 Identities=23% Similarity=0.276 Sum_probs=31.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhCCch-hceecccccceee
Q 034193 16 KLAFLAILVSGGIVLQILACALYNNWW-PMLTGKPHELFVF 55 (101)
Q Consensus 16 ~lI~Ls~~laiG~lLvILaCAL~~nww-Pl~vv~PlP~~I~ 55 (101)
.=..+++.+++-+++++|+ ++|++|- |+.+++.+|..+.
T Consensus 849 ~~~~~~~~lai~~v~lvL~-~qfeS~~~P~~Il~tvPla~i 888 (1009)
T COG0841 849 GQALLLFALALLVVFLVLA-AQYESFSIPFIVMLTVPLGLL 888 (1009)
T ss_pred hhHHHHHHHHHHHHHHHHH-HHHhhhhhhhHHHhhhhHHHH
Confidence 3456667777788888888 8899998 8777778888865
No 11
>PF11023 DUF2614: Protein of unknown function (DUF2614); InterPro: IPR020912 This entry describes proteins of unknown function, which are thought to be membrane proteins.; GO: 0005887 integral to plasma membrane
Probab=34.79 E-value=57 Score=23.56 Aligned_cols=21 Identities=19% Similarity=0.422 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 034193 18 AFLAILVSGGIVLQILACALY 38 (101)
Q Consensus 18 I~Ls~~laiG~lLvILaCAL~ 38 (101)
+..+.+..+|++.++.|.++|
T Consensus 37 ~im~ifmllG~L~~l~S~~VY 57 (114)
T PF11023_consen 37 IIMVIFMLLGLLAILASTAVY 57 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 456678889999999999985
No 12
>PHA02680 ORF090 IMV phosphorylated membrane protein; Provisional
Probab=34.50 E-value=36 Score=23.70 Aligned_cols=17 Identities=24% Similarity=0.481 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHh
Q 034193 21 AILVSGGIVLQILACAL 37 (101)
Q Consensus 21 s~~laiG~lLvILaCAL 37 (101)
|-++..|++|+++||-.
T Consensus 12 s~vli~GIiLL~~ACIF 28 (91)
T PHA02680 12 SGVLICGVLLLTAACVF 28 (91)
T ss_pred cHHHHHHHHHHHHHHHH
Confidence 45677899999999976
No 13
>PF00873 ACR_tran: AcrB/AcrD/AcrF family; InterPro: IPR001036 The Escherichia coli acrA and acrB genes encode a multi-drug efflux system that is believed to protect the bacterium against hydrophobic inhibitors []. The E. coli AcrB protein is a transporter that is energized by proton-motive force and that shows the widest substrate specificity among all known multidrug pumps, ranging from most of the currently used antibiotics, disinfectants, dyes, and detergents to simple solvents. The structure of ligand-free AcrB shows that it is a homotrimer of 110kDa per subunit. Each subunit contains 12 transmembrane helices and two large periplasmic domains (each exceeding 300 residues) between helices 1 and 2, and helices 7 and 8. X-ray analysis of the overexpressed AcrB protein demonstrated that the three periplasmic domains form, in the centre, a funnel-like structure and a connected narrow (or closed) pore. The pore is opened to the periplasm through three vestibules located at subunit interfaces. These vestibules were proposed to allow direct access of drugs from the periplasm as well as the outer leaflet of the cytoplasmic membrane. The three transmembrane domains of AcrB protomers form a large, 30A-wide central cavity that spans the cytoplasmic membrane and extends to the cytoplasm X-ray crystallographic structures of the trimeric AcrB pump from E. coli with four structurally diverse ligands demonstrated that three molecules of ligand bind simultaneously to the extremely large central cavity of 5000 cubic angstroms, primarily by hydrophobic, aromatic stacking and van der Waals interactions. Each ligand uses a slightly different subset of AcrB residues for binding. The bound ligand molecules often interact with each other, stabilising the binding. ; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2V50_B 1T9U_A 2HRT_B 3NOC_A 3NOG_A 4DX7_A 1OYD_A 3AOB_A 1T9V_A 4DX6_B ....
Probab=34.40 E-value=24 Score=32.21 Aligned_cols=38 Identities=18% Similarity=0.255 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhCCch-hceecccccceee
Q 034193 17 LAFLAILVSGGIVLQILACALYNNWW-PMLTGKPHELFVF 55 (101)
Q Consensus 17 lI~Ls~~laiG~lLvILaCAL~~nww-Pl~vv~PlP~~I~ 55 (101)
=+..++.+|+-+++++|+ +.|++|- |+++..-+|..++
T Consensus 863 ~l~~~~~~al~liyliL~-~~F~S~~~PliIm~~IPla~~ 901 (1021)
T PF00873_consen 863 SLGFALILALLLIYLILA-AQFESFRQPLIIMLTIPLALI 901 (1021)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHTTSSSTHHHHHTTHHHHHH
T ss_pred chhhhHHHHHHHHHHHHH-HHhcceeeeEEEEeccchhhH
Confidence 356678888889999999 8899987 9999998888876
No 14
>PRK09577 multidrug efflux protein; Reviewed
Probab=33.32 E-value=22 Score=32.86 Aligned_cols=37 Identities=32% Similarity=0.335 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCch-hceecccccceee
Q 034193 18 AFLAILVSGGIVLQILACALYNNWW-PMLTGKPHELFVF 55 (101)
Q Consensus 18 I~Ls~~laiG~lLvILaCAL~~nww-Pl~vv~PlP~~I~ 55 (101)
...++.+|+.+++++|+ +.|++|+ |+.+.+-+|..+.
T Consensus 867 l~~~~~~ai~li~lvl~-~~F~S~~~plii~~~iPl~l~ 904 (1032)
T PRK09577 867 APMLFALSVLVVFLALA-ALYESWSIPFAVMLVVPLGVI 904 (1032)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHhHHhHHHHHHHhhHHHH
Confidence 44567788888889998 7899988 8888887787765
No 15
>PHA03048 IMV membrane protein; Provisional
Probab=32.73 E-value=48 Score=23.18 Aligned_cols=17 Identities=29% Similarity=0.663 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHh
Q 034193 21 AILVSGGIVLQILACAL 37 (101)
Q Consensus 21 s~~laiG~lLvILaCAL 37 (101)
|-++..|++|+++||-.
T Consensus 12 S~vli~GIiLL~~aCIf 28 (93)
T PHA03048 12 STALIGGIILLAASCIF 28 (93)
T ss_pred chHHHHHHHHHHHHHHH
Confidence 45677899999999976
No 16
>PRK09579 multidrug efflux protein; Reviewed
Probab=28.61 E-value=28 Score=32.18 Aligned_cols=37 Identities=16% Similarity=0.305 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCch-hceecccccceee
Q 034193 18 AFLAILVSGGIVLQILACALYNNWW-PMLTGKPHELFVF 55 (101)
Q Consensus 18 I~Ls~~laiG~lLvILaCAL~~nww-Pl~vv~PlP~~I~ 55 (101)
...++.+++.+++++|+ +.|++|. |+.+.+-+|..++
T Consensus 846 l~~~~~~ai~li~lil~-~~f~S~~~pliI~~~iPla~~ 883 (1017)
T PRK09579 846 LWVTFGLALAIIFLVLA-AQFESFRDPLVILVTVPLSIC 883 (1017)
T ss_pred HHHHHHHHHHHHHHHHH-HHHhhhHHHHHHHHHHHHHHH
Confidence 45567777778888888 7788876 8888886666654
No 17
>PF02038 ATP1G1_PLM_MAT8: ATP1G1/PLM/MAT8 family; InterPro: IPR000272 The FXYD protein family contains at least seven members in mammals []. Two other family members that are not obvious orthologs of any identified mammalian FXYD protein exist in zebrafish. All these proteins share a signature sequence of six conserved amino acids comprising the FXYD motif in the NH2-terminus, and two glycines and one serine residue in the transmembrane domain. FXYD proteins are widely distributed in mammalian tissues with prominent expression in tissues that perform fluid and solute transport or that are electrically excitable. Initial functional characterisation suggested that FXYD proteins act as channels or as modulators of ion channels however studies have revealed that most FXYD proteins have another specific function and act as tissue-specific regulatory subunits of the Na,K-ATPase. Each of these auxiliary subunits produces a distinct functional effect on the transport characteristics of the Na,K-ATPase that is adjusted to the specific functional demands of the tissue in which the FXYD protein is expressed. FXYD proteins appear to preferentially associate with Na,K-ATPase alpha1-beta isozymes, and affect their function in a way that render them operationally complementary or supplementary to coexisting isozymes.; GO: 0005216 ion channel activity, 0006811 ion transport, 0016020 membrane; PDB: 2JO1_A 2JP3_A 2ZXE_G 3A3Y_G 3N23_E 3B8E_H 3KDP_G 3N2F_E.
Probab=26.89 E-value=61 Score=20.21 Aligned_cols=22 Identities=32% Similarity=0.499 Sum_probs=17.1
Q ss_pred hhccCchhHHHHHHHHHHHHHH
Q 034193 9 RACLHTGKLAFLAILVSGGIVL 30 (101)
Q Consensus 9 ~a~lk~~~lI~Ls~~laiG~lL 30 (101)
-..||.|.+|.-+.+..+|++.
T Consensus 11 y~tLrigGLi~A~vlfi~Gi~i 32 (50)
T PF02038_consen 11 YETLRIGGLIFAGVLFILGILI 32 (50)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHhhccchHHHHHHHHHHHHH
Confidence 3567888888888888888854
No 18
>PHA03099 epidermal growth factor-like protein (EGF-like protein); Provisional
Probab=26.25 E-value=67 Score=23.93 Aligned_cols=26 Identities=15% Similarity=0.020 Sum_probs=21.9
Q ss_pred hccCchhHHHHHHHHHHHHHHHHHHHHh
Q 034193 10 ACLHTGKLAFLAILVSGGIVLQILACAL 37 (101)
Q Consensus 10 a~lk~~~lI~Ls~~laiG~lLvILaCAL 37 (101)
+-.+ +.|.+-.++.+|+++.|-+|..
T Consensus 95 n~~t--~Yia~~~il~il~~i~is~~~~ 120 (139)
T PHA03099 95 NTTT--SYIPSPGIVLVLVGIIITCCLL 120 (139)
T ss_pred cchh--hhhhhhHHHHHHHHHHHHHHHH
Confidence 4456 8999999999999998888877
No 19
>TIGR00915 2A0602 The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family. This family is one of several subfamilies within the scope of pfam model pfam00873.
Probab=24.73 E-value=39 Score=31.37 Aligned_cols=37 Identities=30% Similarity=0.260 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCch-hceecccccceee
Q 034193 18 AFLAILVSGGIVLQILACALYNNWW-PMLTGKPHELFVF 55 (101)
Q Consensus 18 I~Ls~~laiG~lLvILaCAL~~nww-Pl~vv~PlP~~I~ 55 (101)
..+++.+|+.+++++|+ +.|++|. |+++.+-+|..+.
T Consensus 872 ~~~~~~~al~li~lvl~-~~F~S~~~pliI~~~iPlsl~ 909 (1044)
T TIGR00915 872 APALYALSLLVVFLCLA-ALYESWSIPVSVMLVVPLGII 909 (1044)
T ss_pred HHHHHHHHHHHHHHHHH-HHHhhhHHHHHHHHHHHHHHH
Confidence 34557778888888998 7799977 8888886666654
No 20
>PF09680 Tiny_TM_bacill: Protein of unknown function (Tiny_TM_bacill); InterPro: IPR010070 This entry represents a family of hypothetical proteins, half of which are 40 residues or less in length. Members are found only in spore-forming species. A Gly-rich variable region is followed by a strongly conserved, highly hydrophobic region, predicted to form a transmembrane helix, ending with an invariant Gly. The consensus for this stretch is FALLVVFILLIIV.
Probab=20.78 E-value=75 Score=17.14 Aligned_cols=15 Identities=27% Similarity=0.317 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHH
Q 034193 22 ILVSGGIVLQILACA 36 (101)
Q Consensus 22 ~~laiG~lLvILaCA 36 (101)
+.+..=++|+|.+|+
T Consensus 8 livVLFILLiIvG~s 22 (24)
T PF09680_consen 8 LIVVLFILLIIVGAS 22 (24)
T ss_pred hHHHHHHHHHHhcce
Confidence 344445788898886
No 21
>COG1575 MenA 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Coenzyme metabolism]
Probab=20.21 E-value=1.2e+02 Score=24.94 Aligned_cols=34 Identities=21% Similarity=0.407 Sum_probs=30.3
Q ss_pred hhccCchhHHHHHHHHHHHHHHHHHHHHhhCCch
Q 034193 9 RACLHTGKLAFLAILVSGGIVLQILACALYNNWW 42 (101)
Q Consensus 9 ~a~lk~~~lI~Ls~~laiG~lLvILaCAL~~nww 42 (101)
.+++|++.++.++++.-.|.+++-+.|+...+|+
T Consensus 89 ~~~~k~~~~l~l~l~~~~g~~llg~~~~~~s~~~ 122 (303)
T COG1575 89 RQSMKPALILSLALFLLAGLALLGVILAALSDWL 122 (303)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 4678888899999999999999999999999999
Done!