Query 034193
Match_columns 101
No_of_seqs 105 out of 173
Neff 4.3
Searched_HMMs 29240
Date Mon Mar 25 18:29:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034193.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034193hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wrg_A LH-1, light-harvesting 67.6 5.9 0.0002 24.2 3.3 33 69-101 16-51 (55)
2 1nkz_B Light-harvesting protei 37.1 20 0.00067 20.7 1.9 32 68-99 7-41 (41)
3 2jp3_A FXYD domain-containing 35.9 23 0.00079 22.5 2.3 24 9-32 14-37 (67)
4 2zxe_G FXYD10, phospholemman-l 28.5 33 0.0011 22.1 2.1 22 10-31 17-38 (74)
5 2jo1_A Phospholemman; FXYD1, N 28.5 36 0.0012 21.9 2.3 24 10-33 14-37 (72)
6 3ua0_A Fibroin heavy chain; th 28.3 12 0.00042 26.6 0.0 9 29-37 13-21 (134)
7 1dx7_A Light-harvesting protei 20.7 43 0.0015 19.8 1.4 30 68-97 15-47 (48)
8 1lgh_B LH II, B800/850, light 19.8 50 0.0017 19.3 1.5 31 67-97 11-44 (45)
9 4dx5_A Acriflavine resistance 18.5 48 0.0017 28.9 1.8 37 18-55 873-910 (1057)
10 2v50_A Multidrug resistance pr 18.0 46 0.0016 29.1 1.5 35 20-55 874-909 (1052)
No 1
>1wrg_A LH-1, light-harvesting protein B-880, beta chain; membrane protein, pigment binding, photosynthesis; NMR {Rhodospirillum rubrum}
Probab=67.64 E-value=5.9 Score=24.22 Aligned_cols=33 Identities=15% Similarity=0.081 Sum_probs=27.9
Q ss_pred HHHH-HHHHHH-HHHHHHH-HhhhccccCCCCCCCC
Q 034193 69 FVAN-FKYIVC-PAIGQLS-FMHAKIISDLPSMPRP 101 (101)
Q Consensus 69 ~~d~-~~FlT~-lvvSg~a-LaHa~iI~~~~~~~~~ 101 (101)
.+|+ ..|+++ .+..++| +||.-.-.+.|-.|.|
T Consensus 16 AqEfH~~f~~~~~~F~~iAvvAH~L~~~wrPWl~g~ 51 (55)
T 1wrg_A 16 AKEFHKIFTSSILVFFGVAAFAHLLVWIWRPWVPGP 51 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSSCSSSSCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCc
Confidence 4454 678888 9999999 9999999999998875
No 2
>1nkz_B Light-harvesting protein B-800/850, beta chain; light harvesting complex II, trans-membrane helices, rhodopi glucoside; HET: CXM RG1 BOG BCL; 2.00A {Rhodoblastus acidophilus} SCOP: f.3.1.1 PDB: 1kzu_B* 2fkw_B* 1ijd_B*
Probab=37.10 E-value=20 Score=20.67 Aligned_cols=32 Identities=16% Similarity=-0.062 Sum_probs=24.6
Q ss_pred hHHHH-HHHHHH-HHHHHHH-HhhhccccCCCCCC
Q 034193 68 HFVAN-FKYIVC-PAIGQLS-FMHAKIISDLPSMP 99 (101)
Q Consensus 68 ~~~d~-~~FlT~-lvvSg~a-LaHa~iI~~~~~~~ 99 (101)
..+|+ +.|.+| .+..++| +||.-+-.+.|-.|
T Consensus 7 EA~EfH~~~~~~~~~F~~iA~vAH~l~w~wrPWl~ 41 (41)
T 1nkz_B 7 QSEELHKYVIDGTRVFLGLALVAHFLAFSATPWLH 41 (41)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 45666 567888 9999999 99988877777653
No 3
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=35.93 E-value=23 Score=22.47 Aligned_cols=24 Identities=33% Similarity=0.515 Sum_probs=19.4
Q ss_pred hhccCchhHHHHHHHHHHHHHHHH
Q 034193 9 RACLHTGKLAFLAILVSGGIVLQI 32 (101)
Q Consensus 9 ~a~lk~~~lI~Ls~~laiG~lLvI 32 (101)
-..||.|.+|.-+++.++|++++.
T Consensus 14 Y~tLRigGLifA~vLfi~GI~iil 37 (67)
T 2jp3_A 14 WESLQLGGLIFGGLLCIAGIALAL 37 (67)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHheecchhhHHHHHHHHHHHHH
Confidence 456888899999999999987654
No 4
>2zxe_G FXYD10, phospholemman-like protein; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_G*
Probab=28.53 E-value=33 Score=22.14 Aligned_cols=22 Identities=27% Similarity=0.256 Sum_probs=17.4
Q ss_pred hccCchhHHHHHHHHHHHHHHH
Q 034193 10 ACLHTGKLAFLAILVSGGIVLQ 31 (101)
Q Consensus 10 a~lk~~~lI~Ls~~laiG~lLv 31 (101)
..||.|.+|.-+++.++|++++
T Consensus 17 ~tLRigGLifA~vLfi~GI~ii 38 (74)
T 2zxe_G 17 YRLRVVGLIVAAVLCVIGIIIL 38 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHheeccchhHHHHHHHHHHHH
Confidence 4678888888888888887754
No 5
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=28.50 E-value=36 Score=21.86 Aligned_cols=24 Identities=29% Similarity=0.427 Sum_probs=18.7
Q ss_pred hccCchhHHHHHHHHHHHHHHHHH
Q 034193 10 ACLHTGKLAFLAILVSGGIVLQIL 33 (101)
Q Consensus 10 a~lk~~~lI~Ls~~laiG~lLvIL 33 (101)
..||.|.+|.-+++.++|++++.-
T Consensus 14 ~tLRiGGLifA~vLfi~GI~iilS 37 (72)
T 2jo1_A 14 QSLQIGGLVIAGILFILGILIVLS 37 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhccchHHHHHHHHHHHHHHHc
Confidence 457788899988888888876543
No 6
>3ua0_A Fibroin heavy chain; the double-layered-sheets, fibroin folding initiation, prote; 3.00A {Bombyx mori}
Probab=28.32 E-value=12 Score=26.57 Aligned_cols=9 Identities=56% Similarity=0.995 Sum_probs=0.0
Q ss_pred HHHHHHHHh
Q 034193 29 VLQILACAL 37 (101)
Q Consensus 29 lLvILaCAL 37 (101)
++|||-|||
T Consensus 13 ~~VILCCAL 21 (134)
T 3ua0_A 13 TFVILCCAL 21 (134)
T ss_dssp ---------
T ss_pred hhhhhhHHH
Confidence 578999999
No 7
>1dx7_A Light-harvesting protein B-875-beta chain; bacteriochlorophyll binding, membrane protein, photosynthesis; NMR {Rhodobacter sphaeroides} SCOP: f.3.1.1 PDB: 1jo5_A
Probab=20.73 E-value=43 Score=19.81 Aligned_cols=30 Identities=10% Similarity=-0.037 Sum_probs=23.3
Q ss_pred hHHHH-HHHHHH-HHHHHHH-HhhhccccCCCC
Q 034193 68 HFVAN-FKYIVC-PAIGQLS-FMHAKIISDLPS 97 (101)
Q Consensus 68 ~~~d~-~~FlT~-lvvSg~a-LaHa~iI~~~~~ 97 (101)
..+|+ +.|.+| .+..++| +||.-+-.+.|-
T Consensus 15 EA~EfH~~~~~~~~~F~~iA~vAH~l~w~wrPW 47 (48)
T 1dx7_A 15 QAQELHSVYMSGLWLFSAVAIVAHLAVYIWRPW 47 (48)
T ss_dssp HHHHHTHHHHHHHHHHTTHHHHHHHHHHHSSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 45666 567888 8899999 999887777764
No 8
>1lgh_B LH II, B800/850, light harvesting complex II; bacteriochlorophyll, dexter energy transfer, foerster exciton transfer mechanism; HET: BCL LYC DET HTO; 2.40A {Phaeospirillum molischianum} SCOP: f.3.1.1
Probab=19.83 E-value=50 Score=19.27 Aligned_cols=31 Identities=16% Similarity=0.016 Sum_probs=23.1
Q ss_pred hhHHHH-HHHHHH-HHHHHHH-HhhhccccCCCC
Q 034193 67 LHFVAN-FKYIVC-PAIGQLS-FMHAKIISDLPS 97 (101)
Q Consensus 67 ~~~~d~-~~FlT~-lvvSg~a-LaHa~iI~~~~~ 97 (101)
...+|+ ..|.+| .+..++| +||.-+-.+.|-
T Consensus 11 ~EA~EfH~~~~~~~~~F~~iA~vAH~L~~~wrPW 44 (45)
T 1lgh_B 11 EEAIAVHDQFKTTFSAFIILAAVAHVLVWVWKPW 44 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 356777 567778 8999999 999877666653
No 9
>4dx5_A Acriflavine resistance protein B; multidrug efflux protein, membrane protein, transpor; HET: LMT OCT D10 HEX D12 MIY C14 LMU DD9 UND GOL; 1.90A {Escherichia coli} PDB: 2hrt_A* 2gif_A* 4dx7_A* 4dx6_A* 3noc_A* 1oy6_A* 1oy9_A* 1oyd_A* 1oy8_A* 1oye_A 2rdd_A* 2w1b_A* 3d9b_A 2i6w_A* 3nog_A* 1t9x_A* 1t9t_A* 1t9v_A* 1t9w_A* 1t9u_A* ...
Probab=18.53 E-value=48 Score=28.90 Aligned_cols=37 Identities=32% Similarity=0.265 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCch-hceecccccceee
Q 034193 18 AFLAILVSGGIVLQILACALYNNWW-PMLTGKPHELFVF 55 (101)
Q Consensus 18 I~Ls~~laiG~lLvILaCAL~~nww-Pl~vv~PlP~~I~ 55 (101)
...++.+++.+++++|. ..|++|. |+.+++++|..+.
T Consensus 873 ~~~~~~~a~~~i~l~L~-~~f~s~~~~l~~l~~i~~~~~ 910 (1057)
T 4dx5_A 873 APSLYAISLIVVFLCLA-ALYESWSIPFSVMLVVPLGVI 910 (1057)
T ss_dssp HHHHHHHHHHHHHHHHH-HHHTCSSTHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-HHHhhHHHHHHHHHHHHHHHH
Confidence 34556666677777776 6688875 7777777777654
No 10
>2v50_A Multidrug resistance protein MEXB; DDM, RND, membrane, detergent, transport, cell membrane, transmembrane, membrane protein; HET: LMT; 3.00A {Pseudomonas aeruginosa PA01}
Probab=17.96 E-value=46 Score=29.14 Aligned_cols=35 Identities=31% Similarity=0.291 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHhhCCch-hceecccccceee
Q 034193 20 LAILVSGGIVLQILACALYNNWW-PMLTGKPHELFVF 55 (101)
Q Consensus 20 Ls~~laiG~lLvILaCAL~~nww-Pl~vv~PlP~~I~ 55 (101)
.++.+++.+++++|. ..|++|+ |+.+++++|..+.
T Consensus 874 ~~~~~a~~~i~l~l~-~~f~s~~~~l~il~~ip~~~~ 909 (1052)
T 2v50_A 874 ALYALSLLVVFLCLA-ALYESWSIPFSVMLVVPLGVI 909 (1052)
T ss_dssp HHHHHHHHHHHHHHH-HHTTCSSTTHHHHTHHHHHHT
T ss_pred HHHHHHHHHHHHHHH-HHHcchHHHHHHHHHHHHHHH
Confidence 445666666667776 5588876 8877777777654
Done!