Query 034193
Match_columns 101
No_of_seqs 105 out of 173
Neff 4.3
Searched_HMMs 13730
Date Mon Mar 25 18:29:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034193.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/034193hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1iwga8 f.35.1.1 (A:513-566,A: 44.7 3.9 0.00028 27.9 1.4 35 20-55 61-96 (222)
2 d1lghb_ f.3.1.1 (B:) Light-har 16.0 33 0.0024 18.5 1.5 29 68-96 10-41 (43)
3 d1iwga7 f.35.1.1 (A:7-37,A:331 10.0 38 0.0028 22.2 0.7 32 23-54 44-77 (199)
4 d1jo5a_ f.3.1.1 (A:) Light-har 8.9 44 0.0032 18.4 0.5 29 68-96 15-46 (48)
5 d1q90m_ f.23.25.1 (M:) PetM su 7.6 88 0.0064 15.8 1.4 10 24-33 20-29 (34)
6 d1iaza_ b.97.1.1 (A:) Equinato 6.9 48 0.0035 22.7 0.1 8 37-44 108-115 (175)
7 d1wixa_ a.40.3.1 (A:) Hook hom 6.6 85 0.0062 20.3 1.2 10 28-37 116-125 (164)
8 d1gwya_ b.97.1.1 (A:) Sticholy 5.7 58 0.0042 22.3 -0.1 8 37-44 110-117 (175)
9 d2e74f1 f.23.25.1 (F:1-32) Pet 5.3 2.2E+02 0.016 14.0 2.6 14 18-31 5-18 (32)
10 d1rh1a2 f.1.1.1 (A:313-511) Co 4.9 65 0.0047 22.3 -0.2 11 38-48 125-135 (199)
No 1
>d1iwga8 f.35.1.1 (A:513-566,A:869-1036) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=44.72 E-value=3.9 Score=27.94 Aligned_cols=35 Identities=31% Similarity=0.294 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHhhCCch-hceecccccceee
Q 034193 20 LAILVSGGIVLQILACALYNNWW-PMLTGKPHELFVF 55 (101)
Q Consensus 20 Ls~~laiG~lLvILaCAL~~nww-Pl~vv~PlP~~I~ 55 (101)
..+.+++-+.+++|. .+|++|. |+++++.+|..+.
T Consensus 61 ~~~~la~i~i~liL~-~~frS~~~~liv~~~ipl~~~ 96 (222)
T d1iwga8 61 SLYAISLIVVFLCLA-ALYESWSIPFSVMLVVPLGVI 96 (222)
T ss_dssp HHHHHHHHHHHHHHH-HTTCSSSHHHHGGGHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-HHHhhHHHHHHHHHHHHHHHH
Confidence 444555555555665 5688886 8887777777655
No 2
>d1lghb_ f.3.1.1 (B:) Light-harvesting complex subunits {Rhodospirillum molischianum [TaxId: 1083]}
Probab=16.04 E-value=33 Score=18.54 Aligned_cols=29 Identities=17% Similarity=0.087 Sum_probs=21.4
Q ss_pred hHHHH-HHHHHH-HHHHHHH-HhhhccccCCC
Q 034193 68 HFVAN-FKYIVC-PAIGQLS-FMHAKIISDLP 96 (101)
Q Consensus 68 ~~~d~-~~FlT~-lvvSg~a-LaHa~iI~~~~ 96 (101)
..+|+ +.|++| .+-.++| .||.-+=.+.|
T Consensus 10 EA~EfH~~~~~g~~~F~~iAvvAHiLvw~wrP 41 (43)
T d1lghb_ 10 EAIAVHDQFKTTFSAFIILAAVAHVLVWVWKP 41 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 45666 678888 8889999 99976655554
No 3
>d1iwga7 f.35.1.1 (A:7-37,A:331-498) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=9.98 E-value=38 Score=22.16 Aligned_cols=32 Identities=19% Similarity=0.256 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHh-hCCchhceecc-ccccee
Q 034193 23 LVSGGIVLQILACAL-YNNWWPMLTGK-PHELFV 54 (101)
Q Consensus 23 ~laiG~lLvILaCAL-~~nwwPl~vv~-PlP~~I 54 (101)
.+.+|++++++-+.+ ++||++-+... ++|..+
T Consensus 44 ~l~ia~~lv~~vl~l~~rs~~~~li~~~~i~~~i 77 (199)
T d1iwga7 44 TLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVL 77 (199)
T ss_dssp HHHHHHHHHHHHHHTTCCCTTTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhheeccccchhh
Confidence 345677778887777 78888666554 555443
No 4
>d1jo5a_ f.3.1.1 (A:) Light-harvesting complex subunits {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=8.86 E-value=44 Score=18.39 Aligned_cols=29 Identities=10% Similarity=-0.001 Sum_probs=21.1
Q ss_pred hHHHH-HHHHHH-HHHHHHH-HhhhccccCCC
Q 034193 68 HFVAN-FKYIVC-PAIGQLS-FMHAKIISDLP 96 (101)
Q Consensus 68 ~~~d~-~~FlT~-lvvSg~a-LaHa~iI~~~~ 96 (101)
..+|+ +.|++| .+-.++| .||.-+=.+.|
T Consensus 15 EA~E~H~~~~~g~~~F~~iAvvAH~L~w~wrP 46 (48)
T d1jo5a_ 15 QAQELHSVYMSGLWLFSAVAIVAHLAVYIWRP 46 (48)
T ss_dssp HHHHHHHHHHHTTTHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 46676 567778 8888999 99976655544
No 5
>d1q90m_ f.23.25.1 (M:) PetM subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=7.64 E-value=88 Score=15.81 Aligned_cols=10 Identities=30% Similarity=0.375 Sum_probs=6.6
Q ss_pred HHHHHHHHHH
Q 034193 24 VSGGIVLQIL 33 (101)
Q Consensus 24 laiG~lLvIL 33 (101)
+++||+|+=.
T Consensus 20 laigfvllrv 29 (34)
T d1q90m_ 20 LAIGFVLLRV 29 (34)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHhheee
Confidence 4678877643
No 6
>d1iaza_ b.97.1.1 (A:) Equinatoxin II (eqtII, tenebrosin C) {European sea anemone (Actinia equina) [TaxId: 6106]}
Probab=6.89 E-value=48 Score=22.67 Aligned_cols=8 Identities=50% Similarity=1.701 Sum_probs=5.8
Q ss_pred hhCCchhc
Q 034193 37 LYNNWWPM 44 (101)
Q Consensus 37 L~~nwwPl 44 (101)
||+|||-.
T Consensus 108 lYsNW~~V 115 (175)
T d1iaza_ 108 WYSNWWNV 115 (175)
T ss_dssp TCCCEEEE
T ss_pred hhhhheee
Confidence 48888854
No 7
>d1wixa_ a.40.3.1 (A:) Hook homolog 1, Hook1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=6.60 E-value=85 Score=20.34 Aligned_cols=10 Identities=40% Similarity=0.853 Sum_probs=8.4
Q ss_pred HHHHHHHHHh
Q 034193 28 IVLQILACAL 37 (101)
Q Consensus 28 ~lLvILaCAL 37 (101)
++.++|+||+
T Consensus 116 Ll~LiLg~AV 125 (164)
T d1wixa_ 116 LLQLILGCAV 125 (164)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHHH
Confidence 5668999998
No 8
>d1gwya_ b.97.1.1 (A:) Sticholysin II {Carribean sea anemone (Stoichactis helianthus) [TaxId: 6123]}
Probab=5.67 E-value=58 Score=22.27 Aligned_cols=8 Identities=50% Similarity=1.709 Sum_probs=5.7
Q ss_pred hhCCchhc
Q 034193 37 LYNNWWPM 44 (101)
Q Consensus 37 L~~nwwPl 44 (101)
||+|||-.
T Consensus 110 lYsNW~aV 117 (175)
T d1gwya_ 110 WYSNWWDV 117 (175)
T ss_dssp SCCCEEEE
T ss_pred hhhhheee
Confidence 47888854
No 9
>d2e74f1 f.23.25.1 (F:1-32) PetM subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=5.31 E-value=2.2e+02 Score=14.02 Aligned_cols=14 Identities=29% Similarity=0.446 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHH
Q 034193 18 AFLAILVSGGIVLQ 31 (101)
Q Consensus 18 I~Ls~~laiG~lLv 31 (101)
|.-+..++.|+.++
T Consensus 5 il~aa~lsfglifv 18 (32)
T d2e74f1 5 MLYAALLSFGLIFV 18 (32)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHH
Confidence 44455566666554
No 10
>d1rh1a2 f.1.1.1 (A:313-511) Colicin B C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=4.93 E-value=65 Score=22.31 Aligned_cols=11 Identities=27% Similarity=0.664 Sum_probs=9.1
Q ss_pred hCCchhceecc
Q 034193 38 YNNWWPMLTGK 48 (101)
Q Consensus 38 ~~nwwPl~vv~ 48 (101)
.+||-||++=+
T Consensus 125 TgNWrPl~vk~ 135 (199)
T d1rh1a2 125 TGNWGPLMLEV 135 (199)
T ss_dssp SSCCHHHHHHH
T ss_pred CCCchhHHHHH
Confidence 68999998755
Done!