BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 034194
(101 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2X1J|A Chain A, H71a Mutant Of The Antibiotic Resistance Protein Nima From
Deinococcus Radiodurans
Length = 216
Score = 28.9 bits (63), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 6/40 (15%)
Query: 24 EDGGSRKFVIPISHLYHPLFGQLLEKAREVYGYNTDGPLR 63
EDG + F+ P+++ Y P G L VY N G LR
Sbjct: 67 EDGAAFPFITPLAYAYRPEQGDL------VYATNVVGRLR 100
>pdb|2X1K|A Chain A, H71s Mutant Of The Antibiotic Resistance Protein Nima From
Deinococcus Radiodurans
Length = 216
Score = 28.5 bits (62), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 6/40 (15%)
Query: 24 EDGGSRKFVIPISHLYHPLFGQLLEKAREVYGYNTDGPLR 63
EDG + F+ P+++ Y P G L VY N G LR
Sbjct: 67 EDGAAFPFITPLAYAYRPEQGDL------VYSTNVVGRLR 100
>pdb|3GYI|A Chain A, Cholesterol Oxidase From Streptomyces Sp. N485d Mutant
(1.0a)
Length = 504
Score = 28.1 bits (61), Expect = 1.2, Method: Composition-based stats.
Identities = 22/52 (42%), Positives = 27/52 (51%), Gaps = 11/52 (21%)
Query: 39 YHPLFGQLLEKAREVYG--------YNTDGPLRLPCS--VDDFLHLQWRIER 80
YHPL G +L KA + YG Y TDG L +P S VD F+ + ER
Sbjct: 441 YHPLGGCVLGKATDDYGRVAGYKNLYVTDGSL-IPGSVGVDPFVTITALAER 491
>pdb|1W3O|A Chain A, Crystal Structure Of Nima From D. Radiodurans
pdb|1W3P|A Chain A, Nima From D. Radiodurans With A His71-Pyruvate Residue
pdb|1W3Q|A Chain A, Nima From D. Radiodurans With Covalenly Bound Lactate
pdb|1W3R|A Chain A, Nima From D. Radiodurans With Metronidazole And Pyruvate
pdb|2VPA|A Chain A, High Resolution Crystal Structure Of The Antibiotic
Resistance Protein Nima From Deinococcus Radiodurans
Length = 216
Score = 27.3 bits (59), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 6/40 (15%)
Query: 24 EDGGSRKFVIPISHLYHPLFGQLLEKAREVYGYNTDGPLR 63
EDG + F+ P+++ Y P G L VY N G LR
Sbjct: 67 EDGAAFPFITPLAYAYRPEQGDL------VYHTNVVGRLR 100
>pdb|1IJH|A Chain A, Cholesterol Oxidase From Streptomyces Asn485leu Mutant
pdb|3GYJ|A Chain A, Cholesterol Oxidase From Streptomyces Sp. N485l Mutant
(0.92a)
Length = 504
Score = 26.9 bits (58), Expect = 2.6, Method: Composition-based stats.
Identities = 18/38 (47%), Positives = 21/38 (55%), Gaps = 9/38 (23%)
Query: 39 YHPLFGQLLEKAREVYG--------YNTDGPLRLPCSV 68
YHPL G +L KA + YG Y TDG L +P SV
Sbjct: 441 YHPLGGCVLGKATDDYGRVAGYKNLYVTDGSL-IPGSV 477
>pdb|1B8S|A Chain A, Cholesterol Oxidase From Streptomyces Glu361gln Mutant
Length = 504
Score = 26.9 bits (58), Expect = 2.6, Method: Composition-based stats.
Identities = 18/38 (47%), Positives = 21/38 (55%), Gaps = 9/38 (23%)
Query: 39 YHPLFGQLLEKAREVYG--------YNTDGPLRLPCSV 68
YHPL G +L KA + YG Y TDG L +P SV
Sbjct: 441 YHPLGGCVLGKATDDYGRVAGYKNLYVTDGSL-IPGSV 477
>pdb|1B4V|A Chain A, Cholesterol Oxidase From Streptomyces
pdb|1MXT|A Chain A, Atomic Resolution Structure Of Cholesterol Oxidase
(Streptomyces Sp. Sa-Coo)
pdb|1N1P|A Chain A, Atomic Resolution Structure Of Cholesterol Oxidase @ Ph
7.4 (Streptomyces Sp. Sa-Coo)
pdb|1N4U|A Chain A, Cholesterol Oxidase From Streptomyces @ Ph 4.5
(Streptomyces Sp. Sa- Coo)
pdb|1N4V|A Chain A, Atomic Resolution Structure Of Cholesterol Oxidase @ph 5.8
(Streptomyces Sp. Sa-Coo)
pdb|1N4W|A Chain A, Atomic Resolution Structure Of Cholesterol Oxidase @ Ph
7.3 (Streptomyces Sp. Sa-Coo)
pdb|2GEW|A Chain A, Atomic Resolution Structure Of Cholesterol Oxidase @ Ph
9.0 (Streptomyces Sp. Sa-Coo)
Length = 504
Score = 26.9 bits (58), Expect = 2.6, Method: Composition-based stats.
Identities = 18/38 (47%), Positives = 21/38 (55%), Gaps = 9/38 (23%)
Query: 39 YHPLFGQLLEKAREVYG--------YNTDGPLRLPCSV 68
YHPL G +L KA + YG Y TDG L +P SV
Sbjct: 441 YHPLGGCVLGKATDDYGRVAGYKNLYVTDGSL-IPGSV 477
>pdb|3CNJ|A Chain A, Cholesterol Oxidase From Streptomyces Sp. F359w Mutant
(0.95a)
Length = 499
Score = 26.9 bits (58), Expect = 2.6, Method: Composition-based stats.
Identities = 18/38 (47%), Positives = 21/38 (55%), Gaps = 9/38 (23%)
Query: 39 YHPLFGQLLEKAREVYG--------YNTDGPLRLPCSV 68
YHPL G +L KA + YG Y TDG L +P SV
Sbjct: 439 YHPLGGCVLGKATDDYGRVAGYKNLYVTDGSL-IPGSV 475
>pdb|3R2G|A Chain A, Crystal Structure Of Inosine 5' Monophosphate
Dehydrogenase From Legionella Pneumophila
Length = 361
Score = 25.8 bits (55), Expect = 5.9, Method: Composition-based stats.
Identities = 16/64 (25%), Positives = 30/64 (46%), Gaps = 9/64 (14%)
Query: 1 MQEDKKTMKVKKGWLAVQVGLEE---------EDGGSRKFVIPISHLYHPLFGQLLEKAR 51
++E+ + K KG + V VG E D G+ F + ++H + G+ L+ R
Sbjct: 77 IEENIQEFKKCKGPVFVSVGCTENELQRAEALRDAGADFFCVDVAHAHAKYVGKTLKSLR 136
Query: 52 EVYG 55
++ G
Sbjct: 137 QLLG 140
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.140 0.437
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,097,783
Number of Sequences: 62578
Number of extensions: 119944
Number of successful extensions: 207
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 207
Number of HSP's gapped (non-prelim): 11
length of query: 101
length of database: 14,973,337
effective HSP length: 67
effective length of query: 34
effective length of database: 10,780,611
effective search space: 366540774
effective search space used: 366540774
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)