Query 034194
Match_columns 101
No_of_seqs 108 out of 607
Neff 4.2
Searched_HMMs 29240
Date Mon Mar 25 18:30:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034194.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034194hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1s1g_A Potassium voltage-gated 71.9 2.6 9E-05 28.7 2.7 74 1-83 1-76 (124)
2 2vkp_A BTB/POZ domain-containi 54.3 18 0.00062 22.1 4.0 62 15-83 11-75 (109)
3 2vpk_A Myoneurin; transcriptio 51.3 19 0.00064 22.5 3.8 48 29-83 32-84 (116)
4 1vd2_A Protein kinase C, IOTA 46.7 30 0.001 22.5 4.3 34 27-64 16-49 (89)
5 1r29_A B-cell lymphoma 6 prote 45.4 21 0.0007 22.7 3.3 51 29-83 39-93 (127)
6 3ga1_A Nucleus accumbens-assoc 43.6 36 0.0012 21.7 4.3 54 15-82 36-93 (129)
7 1und_A Advillin, P92; actin bi 42.0 6.3 0.00022 22.2 0.3 19 36-54 1-19 (37)
8 3drz_A BTB/POZ domain-containi 38.5 76 0.0026 20.3 6.3 63 13-83 6-73 (107)
9 2al3_A TUG long isoform; TUG U 36.3 37 0.0013 22.3 3.4 33 28-62 19-52 (90)
10 2if5_A Zinc finger and BTB dom 30.3 70 0.0024 19.8 4.0 52 29-83 35-89 (120)
11 3b84_A Zinc finger and BTB dom 29.8 70 0.0024 20.0 3.9 48 29-83 34-84 (119)
12 3m91_B Prokaryotic ubiquitin-l 28.3 19 0.00065 21.2 0.8 19 43-61 23-43 (44)
13 3ohu_A Transcription regulator 27.3 47 0.0016 20.9 2.7 48 29-81 42-93 (125)
14 2xko_C PIPX, global nitrogen r 26.1 8.4 0.00029 25.8 -1.1 11 36-46 5-15 (89)
15 1w8x_N Protein P31, protein C, 25.6 15 0.00052 25.6 0.1 29 10-44 85-123 (126)
16 3pmi_A PWWP domain-containing 24.9 52 0.0018 23.4 2.8 30 26-55 46-78 (134)
17 2q81_A MIZ-1 protein; BTB/POZ 24.8 76 0.0026 19.9 3.4 47 29-83 37-86 (119)
18 2nz0_B Potassium voltage-gated 22.6 47 0.0016 22.8 2.2 64 11-83 33-98 (140)
19 2ns5_A Partitioning-defective 22.6 1.1E+02 0.0037 19.9 3.8 32 15-54 5-36 (85)
20 1zav_U 50S ribosomal protein L 22.2 53 0.0018 17.4 1.9 13 43-55 18-30 (30)
21 3qli_A Coenzyme A transferase; 21.9 49 0.0017 27.2 2.5 19 38-56 436-454 (455)
22 1y74_B MLIN-2/CASK, peripheral 21.0 25 0.00086 20.0 0.4 20 36-55 26-49 (50)
23 2ho9_A Chemotaxis protein CHEW 20.9 1.1E+02 0.0038 20.5 3.8 22 11-39 16-37 (167)
24 1j26_A Immature colon carcinom 20.9 59 0.002 21.9 2.3 52 28-81 45-106 (112)
25 1buo_A POZ domain, protein (pr 20.2 95 0.0033 19.4 3.2 47 29-83 38-87 (121)
26 1yu8_X Villin; alpha helix, 3- 20.2 22 0.00077 22.2 0.1 19 36-54 31-49 (67)
No 1
>1s1g_A Potassium voltage-gated channel subfamily D membe; K+ channels, tetramerization domain, T1 domain, transport PR; 2.60A {Homo sapiens} SCOP: d.42.1.2
Probab=71.86 E-value=2.6 Score=28.71 Aligned_cols=74 Identities=14% Similarity=0.067 Sum_probs=46.4
Q ss_pred CccccccCCCCCceEEEEeccccCCCCeeEEEEecCCCC-chHHHHHHHHHHHhcCc-CCCCCeEecccHHHHHHHHHHH
Q 034194 1 MQEDKKTMKVKKGWLAVQVGLEEEDGGSRKFVIPISHLY-HPLFGQLLEKAREVYGY-NTDGPLRLPCSVDDFLHLQWRI 78 (101)
Q Consensus 1 ~~~~~k~~~vpkG~~aVyVG~e~~~e~~kRfvVpv~~L~-hP~F~~LL~~AeEEfGf-~~~G~L~IPC~~~~Fe~vl~~i 78 (101)
|++...........+.+-||. +||.+..+-|. .|- .+|..++...-+ +.+|.+-|-.+...|+.||..+
T Consensus 1 ~~~p~~~~~~~~~~V~LNVGG-------~~F~t~~~TL~~~p~--S~L~~~~~~~~~~~~~g~~FiDRdp~~F~~ILnfl 71 (124)
T 1s1g_A 1 MLAPADKNKRQDELIVLNVSG-------RRFQTWRTTLERYPD--TLLGSTEKEFFFNEDTKEYFFDRDPEVFRCVLNFY 71 (124)
T ss_dssp -----------CCEEEEEETT-------EEEEEEHHHHTTSTT--SSTTSSGGGGTBCSSSCSEEECSCHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCEEEEEeCC-------EEEEEeHHHHhcCCC--ceecccCCcccccCCCCcEEEcCChHHHHHHHHHH
Confidence 555555555667788899993 89999987663 332 234334443334 3689999999999999999999
Q ss_pred hhcCC
Q 034194 79 ERESN 83 (101)
Q Consensus 79 ~~~~~ 83 (101)
.....
T Consensus 72 R~G~l 76 (124)
T 1s1g_A 72 RTGKL 76 (124)
T ss_dssp HHSCB
T ss_pred hcCCC
Confidence 98643
No 2
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens}
Probab=54.31 E-value=18 Score=22.14 Aligned_cols=62 Identities=16% Similarity=0.153 Sum_probs=43.1
Q ss_pred EEEEeccccCCCCeeEEEEecCCC--CchHHHHHHHHHHHhcCcCCCCCeEec-ccHHHHHHHHHHHhhcCC
Q 034194 15 LAVQVGLEEEDGGSRKFVIPISHL--YHPLFGQLLEKAREVYGYNTDGPLRLP-CSVDDFLHLQWRIERESN 83 (101)
Q Consensus 15 ~aVyVG~e~~~e~~kRfvVpv~~L--~hP~F~~LL~~AeEEfGf~~~G~L~IP-C~~~~Fe~vl~~i~~~~~ 83 (101)
+.+.||++ ++.++|-+.-..| ..|.|++++...-.|- . ..|.|| .+...|+.++..+-....
T Consensus 11 v~l~v~~~---~~~~~~~~Hk~iLa~~S~~F~~~f~~~~~e~---~-~~i~l~~~~~~~f~~~l~~iYt~~~ 75 (109)
T 2vkp_A 11 VHFVVGPP---GATRTVPAHKYVLAVGSSVFYAMFYGDLAEV---K-SEIHIPDVEPAAFLILLKYMYSDEI 75 (109)
T ss_dssp EEEEESST---TSCEEEEECHHHHHHHCHHHHHHHC---------C-CEEEETTSCHHHHHHHHHHHHHCCC
T ss_pred EEEEECCC---CCcEEEEeeHHHHHHcCHHHHHHhcCCcccC---C-CeEEeCCCCHHHHHHHHHHHcCCCc
Confidence 45667642 2458899988888 6899999997543332 2 678887 689999999998887544
No 3
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens}
Probab=51.26 E-value=19 Score=22.55 Aligned_cols=48 Identities=19% Similarity=0.239 Sum_probs=38.2
Q ss_pred eEEEEecCCC--CchHHHHHHHHHHHhcCcCCCCCeEec---ccHHHHHHHHHHHhhcCC
Q 034194 29 RKFVIPISHL--YHPLFGQLLEKAREVYGYNTDGPLRLP---CSVDDFLHLQWRIERESN 83 (101)
Q Consensus 29 kRfvVpv~~L--~hP~F~~LL~~AeEEfGf~~~G~L~IP---C~~~~Fe~vl~~i~~~~~ 83 (101)
++|-+.-..| ..|.|++++... .+..++|+ .+...|+.++..+-....
T Consensus 32 ~~~~aHk~vLaa~S~yF~~~f~~~-------~~~~i~l~~~~~~~~~f~~ll~~~Yt~~~ 84 (116)
T 2vpk_A 32 FQFKAHRNVLASFSEYFGAIYRST-------SENNVFLDQSQVKADGFQKLLEFIYTGTL 84 (116)
T ss_dssp EEEEECHHHHHHHCHHHHHHHTTC-------CCSCEECCTTTCCHHHHHHHHHHHHHSCC
T ss_pred EEEeccHHHHhhcCHHHHHHHcCC-------CCCeEEeecCCCCHHHHHHHHHHHcCCCc
Confidence 6788877777 579999998654 36778888 789999999998887543
No 4
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=46.73 E-value=30 Score=22.49 Aligned_cols=34 Identities=9% Similarity=0.138 Sum_probs=26.7
Q ss_pred CeeEEEEecCCCCchHHHHHHHHHHHhcCcCCCCCeEe
Q 034194 27 GSRKFVIPISHLYHPLFGQLLEKAREVYGYNTDGPLRL 64 (101)
Q Consensus 27 ~~kRfvVpv~~L~hP~F~~LL~~AeEEfGf~~~G~L~I 64 (101)
+..|+-||. ...|++|.++-.+-|++..+.++++
T Consensus 16 di~~~~v~~----~i~~~~L~~kv~~~~~~~~~~~f~l 49 (89)
T 1vd2_A 16 DIMITHFEP----SISFEGLCNEVRDMCSFDNEQLFTM 49 (89)
T ss_dssp CEEEEEECT----TCCHHHHHHHHHHHTTCCSSCCEEE
T ss_pred eEEEEECCC----CCCHHHHHHHHHHHhCCCCCCeEEE
Confidence 578898887 4689999999999999865444444
No 5
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A
Probab=45.44 E-value=21 Score=22.73 Aligned_cols=51 Identities=16% Similarity=0.109 Sum_probs=39.8
Q ss_pred eEEEEecCCC--CchHHHHHHHHHHHhcCcCCCCCeEe-c-ccHHHHHHHHHHHhhcCC
Q 034194 29 RKFVIPISHL--YHPLFGQLLEKAREVYGYNTDGPLRL-P-CSVDDFLHLQWRIERESN 83 (101)
Q Consensus 29 kRfvVpv~~L--~hP~F~~LL~~AeEEfGf~~~G~L~I-P-C~~~~Fe~vl~~i~~~~~ 83 (101)
++|-+.-..| ..|.|++++...-.| ....|+| + .+...|+.++..+-....
T Consensus 39 ~~~~aHk~iLaa~S~~F~~~f~~~~~e----~~~~i~l~~~~~~~~f~~ll~~~Ytg~~ 93 (127)
T 1r29_A 39 EQFRAHKTVLMACSGLFYSIFTDQLKR----NLSVINLDPEINPEGFNILLDFMYTSRL 93 (127)
T ss_dssp EEEEECHHHHHHHCHHHHHHHTSTTTT----TCSEEECCTTSCHHHHHHHHHHHHHSCC
T ss_pred EEEehHHHHHHHhCHHHHHHhcCCccC----CCCEEEeCCCCCHHHHHHHHHHHcCCCc
Confidence 6788877777 689999999765444 4678999 4 688999999998876543
No 6
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens}
Probab=43.59 E-value=36 Score=21.72 Aligned_cols=54 Identities=17% Similarity=0.185 Sum_probs=41.0
Q ss_pred EEEEeccccCCCCeeEEEEecCCCC--chHHHHHHHHHHHhcCcCCCCCeEec--ccHHHHHHHHHHHhhcC
Q 034194 15 LAVQVGLEEEDGGSRKFVIPISHLY--HPLFGQLLEKAREVYGYNTDGPLRLP--CSVDDFLHLQWRIERES 82 (101)
Q Consensus 15 ~aVyVG~e~~~e~~kRfvVpv~~L~--hP~F~~LL~~AeEEfGf~~~G~L~IP--C~~~~Fe~vl~~i~~~~ 82 (101)
+.+.||. ++|-+.-..|. .|.|++++... ....|.|| .+...|+.++..+-...
T Consensus 36 v~l~v~~-------~~~~~Hk~vLaa~S~~F~~~f~~~-------~~~~i~l~~~~~~~~f~~ll~~iYtg~ 93 (129)
T 3ga1_A 36 VSVVVKG-------HAFKAHRAVLAASSSYFRDLFNNS-------RSAVVELPAAVQPQSFQQILSFCYTGR 93 (129)
T ss_dssp EEEEETT-------EEEEECHHHHHHHBHHHHHHHHHC-------CCSEEECCTTCCHHHHHHHHHHHHHSE
T ss_pred eEEEECC-------EEEEehHHHHHHcCHHHHHHHcCC-------CCCEEEECCCCCHHHHHHHHHHHhCCc
Confidence 4556662 67777766664 69999998875 56789996 89999999999887543
No 7
>1und_A Advillin, P92; actin binding, F-actin binding, cytoskeleton, headpiece subdomain; NMR {Homo sapiens} SCOP: a.14.1.1
Probab=41.96 E-value=6.3 Score=22.16 Aligned_cols=19 Identities=16% Similarity=0.170 Sum_probs=16.8
Q ss_pred CCCCchHHHHHHHHHHHhc
Q 034194 36 SHLYHPLFGQLLEKAREVY 54 (101)
Q Consensus 36 ~~L~hP~F~~LL~~AeEEf 54 (101)
.||+.-.|++++.++.+||
T Consensus 1 ~yLsd~dF~~vFgmsr~eF 19 (37)
T 1und_A 1 XYLSEQDFVSVFGITRGQF 19 (37)
T ss_dssp -CCCHHHHHHHHSSCHHHH
T ss_pred CCCCHHHHHHHHCcCHHHH
Confidence 4899999999999999988
No 8
>3drz_A BTB/POZ domain-containing protein KCTD5; potassium channel domain T1, pentamer, unkno function; 1.90A {Homo sapiens}
Probab=38.53 E-value=76 Score=20.26 Aligned_cols=63 Identities=14% Similarity=0.192 Sum_probs=45.6
Q ss_pred ceEEEEeccccCCCCeeEEEEecCCCC-ch--HHHHHHHHHHHhcC--cCCCCCeEecccHHHHHHHHHHHhhcCC
Q 034194 13 GWLAVQVGLEEEDGGSRKFVIPISHLY-HP--LFGQLLEKAREVYG--YNTDGPLRLPCSVDDFLHLQWRIERESN 83 (101)
Q Consensus 13 G~~aVyVG~e~~~e~~kRfvVpv~~L~-hP--~F~~LL~~AeEEfG--f~~~G~L~IPC~~~~Fe~vl~~i~~~~~ 83 (101)
..+.+-||. +||.+..+-|. .| .|..|.... .++. .+.+|.+-|-.+...|+.||..+.....
T Consensus 6 ~~v~LNVGG-------~~f~t~~~TL~~~p~s~L~~~~~~~-~~~~~~~d~~~~~fiDRdp~~F~~IL~~lr~g~l 73 (107)
T 3drz_A 6 KWVRLNVGG-------TYFLTTRQTLCRDPKSFLYRLCQAD-PDLDSDKDETGAYLIDRDPTYFGPVLNYLRHGKL 73 (107)
T ss_dssp CEEEEEETT-------EEEEEEHHHHTSSTTSHHHHHHTTC-GGGGGGBCTTSCEEECSCHHHHHHHHHHHHHSCC
T ss_pred CEEEEEECC-------EEEEECHHHHhcCCCcchhHHHhcC-CCCCcCCCCCceEEecCChHHHHHHHHHhCCCee
Confidence 467788983 89999987775 34 455554321 1232 3467999999999999999999997643
No 9
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=36.31 E-value=37 Score=22.34 Aligned_cols=33 Identities=18% Similarity=0.302 Sum_probs=25.5
Q ss_pred eeEEEEecCCCCchHHHHHHHHHHHhcCcCC-CCCe
Q 034194 28 SRKFVIPISHLYHPLFGQLLEKAREVYGYNT-DGPL 62 (101)
Q Consensus 28 ~kRfvVpv~~L~hP~F~~LL~~AeEEfGf~~-~G~L 62 (101)
.+|+.|++. ..-.+.++|++|-+.||++. +..|
T Consensus 19 ~rr~~VKvt--p~t~L~~VL~eaC~K~gl~~~~~~L 52 (90)
T 2al3_A 19 GRRHTVKVT--PSTVLLQVLEDTCRRQDFNPSEYDL 52 (90)
T ss_dssp SCEEEECCC--TTSBHHHHHHHHHHHTTCCGGGCEE
T ss_pred CcEEEEEEC--CCCCHHHHHHHHHHHhCCChhhCeE
Confidence 589999883 44478899999999999973 3444
No 10
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A
Probab=30.30 E-value=70 Score=19.83 Aligned_cols=52 Identities=17% Similarity=0.151 Sum_probs=37.4
Q ss_pred eEEEEecCCC--CchHHHHHHHHHHHhcCcCCCCCeEec-ccHHHHHHHHHHHhhcCC
Q 034194 29 RKFVIPISHL--YHPLFGQLLEKAREVYGYNTDGPLRLP-CSVDDFLHLQWRIERESN 83 (101)
Q Consensus 29 kRfvVpv~~L--~hP~F~~LL~~AeEEfGf~~~G~L~IP-C~~~~Fe~vl~~i~~~~~ 83 (101)
++|-+.-..| ..|.|++++...-.| .....|.|+ .+...|+.++..+-....
T Consensus 35 ~~~~aHk~vLaa~S~~F~~~f~~~~~e---~~~~~i~l~~~~~~~f~~ll~~~Yt~~~ 89 (120)
T 2if5_A 35 REFPTHRSVLAACSQYFKKLFTSGAVV---DQQNVYEIDFVSAEALTALMDFAYTATL 89 (120)
T ss_dssp EEEEECHHHHHHHCHHHHHHHHC--------CCSEEECCSSCHHHHHHHHHHHHHSCC
T ss_pred EEEeHHHHHHHHhCHHHHHHhcCCccc---cCCceEEeCCCCHHHHHHHHHHHcCCCC
Confidence 6788877777 479999998753222 245678888 588999999998876543
No 11
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens}
Probab=29.85 E-value=70 Score=20.04 Aligned_cols=48 Identities=21% Similarity=0.086 Sum_probs=37.0
Q ss_pred eEEEEecCCC--CchHHHHHHHHHHHhcCcCCCCCeEec-ccHHHHHHHHHHHhhcCC
Q 034194 29 RKFVIPISHL--YHPLFGQLLEKAREVYGYNTDGPLRLP-CSVDDFLHLQWRIERESN 83 (101)
Q Consensus 29 kRfvVpv~~L--~hP~F~~LL~~AeEEfGf~~~G~L~IP-C~~~~Fe~vl~~i~~~~~ 83 (101)
++|-+.-..| ..|.|++++... . .+.|+|+ .+...|+.++..+-....
T Consensus 34 ~~f~aHk~vLaa~S~yF~~~f~~~-----~--~~~i~l~~~~~~~f~~ll~~iYtg~~ 84 (119)
T 3b84_A 34 LVFKAHWSVLACCSHFFQSLYGDG-----S--GGSVVLPAGFAEIFGLLLDFFYTGHL 84 (119)
T ss_dssp EEEEECHHHHHHHCHHHHHHHTTT-----T--CCCEEECGGGHHHHHHHHHHHHHSCC
T ss_pred EEEEeeHHHHhhcCHHHHHHHCCC-----C--CCeEEeCCCCHHHHHHHHHHHcCCCC
Confidence 6787777776 479999998652 1 6789998 568899999998886544
No 12
>3m91_B Prokaryotic ubiquitin-like protein PUP; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis}
Probab=28.32 E-value=19 Score=21.19 Aligned_cols=19 Identities=26% Similarity=0.511 Sum_probs=6.6
Q ss_pred HHHHHHHHHHhc--CcCCCCC
Q 034194 43 FGQLLEKAREVY--GYNTDGP 61 (101)
Q Consensus 43 F~~LL~~AeEEf--Gf~~~G~ 61 (101)
+-.+|+.-+||| ||-|.|+
T Consensus 23 Id~vLE~NAeeFV~~fVQKGG 43 (44)
T 3m91_B 23 IDDVLEENAEDFVRAYVQKGG 43 (44)
T ss_dssp HHHHHHHTC------------
T ss_pred HHHHHHHhHHHHHHHHHHccC
Confidence 456788888888 8877774
No 13
>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} SCOP: d.42.1.0 PDB: 3ohv_A
Probab=27.34 E-value=47 Score=20.91 Aligned_cols=48 Identities=21% Similarity=0.134 Sum_probs=35.4
Q ss_pred eEEEEecCCCC--chHHHHHHHHHHHhcCcCCCCCeEec--ccHHHHHHHHHHHhhc
Q 034194 29 RKFVIPISHLY--HPLFGQLLEKAREVYGYNTDGPLRLP--CSVDDFLHLQWRIERE 81 (101)
Q Consensus 29 kRfvVpv~~L~--hP~F~~LL~~AeEEfGf~~~G~L~IP--C~~~~Fe~vl~~i~~~ 81 (101)
++|-+.-..|. .|.|++++..... .+..|.|| .+...|+.++..+-..
T Consensus 42 ~~f~aHk~vLaa~S~yF~~~f~~~~~-----e~~~i~l~~~~~~~~f~~~l~~iYtg 93 (125)
T 3ohu_A 42 KEFRAHRAVLAACSEYFWQALVGQTK-----NDLVVSLPEEVTARGFGPLLQFAYTA 93 (125)
T ss_dssp EEEEECHHHHHHHBHHHHHHHTTCCC-----SSCEEECCTTCCHHHHHHHHHHHTTS
T ss_pred EEEechHHHHHHcCHHHHHHhcCCCC-----CCcEEEeCCCCCHHHHHHHHHhHcCC
Confidence 67777766664 6899999875422 25678886 7899999999887654
No 14
>2xko_C PIPX, global nitrogen regulator; transcription, nitrogen assimilation, CRP/FNR superfamily, 2-oxoglutarate, global nitrogen controller; HET: AKG; 2.25A {Synechococcus elongatus} PDB: 2xg8_D*
Probab=26.10 E-value=8.4 Score=25.76 Aligned_cols=11 Identities=55% Similarity=0.896 Sum_probs=8.3
Q ss_pred CCCCchHHHHH
Q 034194 36 SHLYHPLFGQL 46 (101)
Q Consensus 36 ~~L~hP~F~~L 46 (101)
.|||||.|.-|
T Consensus 5 ~YLNHPtFGlL 15 (89)
T 2xko_C 5 NYLNHPTFGLL 15 (89)
T ss_dssp CEEEETTTEEE
T ss_pred ccccCCccchh
Confidence 48999988543
No 15
>1w8x_N Protein P31, protein C, GPC; virus, P3 major capsid protein, P30 TAPE measure, P31 penton protein, P16 membrane protein; 4.20A {Enterobacteria phage PRD1} SCOP: i.6.1.1
Probab=25.55 E-value=15 Score=25.63 Aligned_cols=29 Identities=28% Similarity=0.432 Sum_probs=17.8
Q ss_pred CCCceEEEEeccccCCCCeeEEE----------EecCCCCchHHH
Q 034194 10 VKKGWLAVQVGLEEEDGGSRKFV----------IPISHLYHPLFG 44 (101)
Q Consensus 10 vpkG~~aVyVG~e~~~e~~kRfv----------Vpv~~L~hP~F~ 44 (101)
-.+||+|+.|-. +.+|+ +|+-+||.|+-+
T Consensus 85 G~QGYfPlL~~~------~~KFv~~~~~~GKks~P~~FlNF~IA~ 123 (126)
T 1w8x_N 85 GKQGYFPLLVPG------RAKFVARHLGSGKKSVPLFFLNFTIAQ 123 (126)
T ss_dssp CCCSSCCEEECC------SSSSEEEEEEEESSCCCCSCCC-----
T ss_pred CCcccceeeccc------hhhhhhhhhcCCCcceeeEEEeceeee
Confidence 368999999952 45555 688888887644
No 16
>3pmi_A PWWP domain-containing protein MUM1; structural genomics consortium, SGC, protein binding, nucLeu; HET: UNL; 2.82A {Homo sapiens}
Probab=24.92 E-value=52 Score=23.37 Aligned_cols=30 Identities=27% Similarity=0.350 Sum_probs=25.8
Q ss_pred CCeeEEEEecCCCCch---HHHHHHHHHHHhcC
Q 034194 26 GGSRKFVIPISHLYHP---LFGQLLEKAREVYG 55 (101)
Q Consensus 26 e~~kRfvVpv~~L~hP---~F~~LL~~AeEEfG 55 (101)
.+++-|-||++-|+|= .-++|+++|.|.||
T Consensus 46 ~ekrGi~V~LrrLK~fDC~ek~~L~~rAre~Y~ 78 (134)
T 3pmi_A 46 PKMKGFTVSLKSLKHFDCKEKQTLLNQAREDFN 78 (134)
T ss_dssp TTSCCEEEEGGGCEETTSTTHHHHHHHHTTTCH
T ss_pred cccCceEeEcccCCCCChHhHHHHHHHHHHHhc
Confidence 4578899999999884 57889999999997
No 17
>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A
Probab=24.80 E-value=76 Score=19.87 Aligned_cols=47 Identities=11% Similarity=0.029 Sum_probs=36.5
Q ss_pred eEEEEecCCC--CchHHHHHHHHHHHhcCcCCCCCeEecc-cHHHHHHHHHHHhhcCC
Q 034194 29 RKFVIPISHL--YHPLFGQLLEKAREVYGYNTDGPLRLPC-SVDDFLHLQWRIERESN 83 (101)
Q Consensus 29 kRfvVpv~~L--~hP~F~~LL~~AeEEfGf~~~G~L~IPC-~~~~Fe~vl~~i~~~~~ 83 (101)
++|-+.-..| ..|.|++++.. +...+.|+- +...|+.++..+-....
T Consensus 37 ~~~~aHk~vLaa~S~yF~~~f~~--------~~~~i~l~~~~~~~f~~ll~~~Ytg~~ 86 (119)
T 2q81_A 37 VHFKAHKAVLAACSEYFKMLFVD--------QKDVVHLDISNAAGLGQVLEFMYTAKL 86 (119)
T ss_dssp EEEEECHHHHHHHCHHHHHHHHH--------CCSGGGGGGCCHHHHHHHHHHHHHSCC
T ss_pred EEEehhHHHHHHcCHHHHHHHcC--------CCCEEEeCCCCHHHHHHHHHHHcCCCC
Confidence 6788887777 48999999975 345677775 78899999998886544
No 18
>2nz0_B Potassium voltage-gated channel subfamily D membe; KV4.3, kchip1, membrane protein; 3.20A {Homo sapiens} PDB: 2i2r_A
Probab=22.63 E-value=47 Score=22.85 Aligned_cols=64 Identities=13% Similarity=0.075 Sum_probs=46.1
Q ss_pred CCceEEEEeccccCCCCeeEEEEecCCC-CchHHHHHHHHHHHhcCc-CCCCCeEecccHHHHHHHHHHHhhcCC
Q 034194 11 KKGWLAVQVGLEEEDGGSRKFVIPISHL-YHPLFGQLLEKAREVYGY-NTDGPLRLPCSVDDFLHLQWRIERESN 83 (101)
Q Consensus 11 pkG~~aVyVG~e~~~e~~kRfvVpv~~L-~hP~F~~LL~~AeEEfGf-~~~G~L~IPC~~~~Fe~vl~~i~~~~~ 83 (101)
....+.+-||. +||.+..+-| ++|- .+|..+....-+ +.+|.+-|-.+-..|+.||..+.....
T Consensus 33 ~~~~V~LNVGG-------~~F~T~~~TL~~~P~--S~L~~~~~~~~~~~~~g~yFiDRdp~~F~~ILnflR~G~l 98 (140)
T 2nz0_B 33 QDELIVLNVSG-------RRFQTWRTTLERYPD--TLLGSTEKEFFFNEDTKEYFFDRDPEVFRCVLNFYRTGKL 98 (140)
T ss_dssp CCCEEEEEETT-------EEEEEEHHHHHTCTT--STTTSGGGGGSEETTTTEEEECSCHHHHHHHHHHHHHSSB
T ss_pred CCCEEEEEECC-------EEEEeeHHHHhcCCC--eeecccCCcccccCCCCeEEEeCCcHHHHHHHHHHhcCCc
Confidence 45678888993 8999988765 2331 234334444334 368999999999999999999998643
No 19
>2ns5_A Partitioning-defective 3 homolog; cell polarity, N-terminal domain, PB1 domain, asymmetric membrane localization, signaling protein; NMR {Rattus norvegicus}
Probab=22.62 E-value=1.1e+02 Score=19.86 Aligned_cols=32 Identities=19% Similarity=0.224 Sum_probs=25.1
Q ss_pred EEEEeccccCCCCeeEEEEecCCCCchHHHHHHHHHHHhc
Q 034194 15 LAVQVGLEEEDGGSRKFVIPISHLYHPLFGQLLEKAREVY 54 (101)
Q Consensus 15 ~aVyVG~e~~~e~~kRfvVpv~~L~hP~F~~LL~~AeEEf 54 (101)
+.|.+|. .|++||-.= +.-..+.|.++|-.-|
T Consensus 5 vtV~fg~-------~~vvVPC~d-g~~tV~~L~~~A~~RY 36 (85)
T 2ns5_A 5 VTVCFGR-------TRVDVPCGD-GRMKVFSLIQQAVTRY 36 (85)
T ss_dssp EEEEETT-------EEEEEEESS-SCCCHHHHHHHHHHHH
T ss_pred EEEEECC-------EEEEEECCC-CcccHHHHHHHHHHHH
Confidence 6788884 899999966 4556788888887766
No 20
>1zav_U 50S ribosomal protein L7/L12; ribosome structure and function, L10-L12 complex structure, L10E structure, L7/12 ribosomal stalk; 1.90A {Thermotoga maritima} SCOP: a.108.1.1 PDB: 1zaw_U 1zax_U 1dd3_C
Probab=22.22 E-value=53 Score=17.41 Aligned_cols=13 Identities=23% Similarity=0.675 Sum_probs=10.6
Q ss_pred HHHHHHHHHHhcC
Q 034194 43 FGQLLEKAREVYG 55 (101)
Q Consensus 43 F~~LL~~AeEEfG 55 (101)
..+|.+.-||+||
T Consensus 18 l~eLvk~lEe~fG 30 (30)
T 1zav_U 18 LAELVKKLEDKFG 30 (30)
T ss_dssp HHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhC
Confidence 4578888899997
No 21
>3qli_A Coenzyme A transferase; COEN transferase; 1.90A {Yersinia pestis} PDB: 3qlk_A 3s8d_A
Probab=21.87 E-value=49 Score=27.18 Aligned_cols=19 Identities=32% Similarity=0.363 Sum_probs=16.7
Q ss_pred CCchHHHHHHHHHHHhcCc
Q 034194 38 LYHPLFGQLLEKAREVYGY 56 (101)
Q Consensus 38 L~hP~F~~LL~~AeEEfGf 56 (101)
+-||.||+.|.+++++.|+
T Consensus 436 iAHPdfR~~L~~~A~~~~~ 454 (455)
T 3qli_A 436 LAHPDFRDELTQAAKKMHL 454 (455)
T ss_dssp TSCHHHHHHHHHHHHHTTC
T ss_pred ccCcchHHHHHHHHHHcCC
Confidence 8899999999988888764
No 22
>1y74_B MLIN-2/CASK, peripheral plasma membrane protein CASK; L27 domain, scaffold protein, protein assembly, cell polarity, transport protein; NMR {Mus musculus} SCOP: a.194.1.1 PDB: 1zl8_B
Probab=20.95 E-value=25 Score=19.96 Aligned_cols=20 Identities=45% Similarity=0.632 Sum_probs=14.8
Q ss_pred CCCCchHHHHHHHH----HHHhcC
Q 034194 36 SHLYHPLFGQLLEK----AREVYG 55 (101)
Q Consensus 36 ~~L~hP~F~~LL~~----AeEEfG 55 (101)
..|+.|-||+||+- |.++||
T Consensus 26 ~lL~~PHfqaLl~ahD~Va~~~y~ 49 (50)
T 1y74_B 26 RILTQPHFMALLQTHDVVAHEVYS 49 (50)
T ss_dssp HHHHSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHcCHHHHHHHHHHHHHHHHHhc
Confidence 46889999999974 445553
No 23
>2ho9_A Chemotaxis protein CHEW; solution structure, signaling protein; NMR {Escherichia coli}
Probab=20.94 E-value=1.1e+02 Score=20.52 Aligned_cols=22 Identities=18% Similarity=0.321 Sum_probs=17.1
Q ss_pred CCceEEEEeccccCCCCeeEEEEecCCCC
Q 034194 11 KKGWLAVQVGLEEEDGGSRKFVIPISHLY 39 (101)
Q Consensus 11 pkG~~aVyVG~e~~~e~~kRfvVpv~~L~ 39 (101)
..-++.+.+|. ++|.||+....
T Consensus 16 ~~~~l~f~lg~-------~~yaip~~~V~ 37 (167)
T 2ho9_A 16 GQEFLVFTLGD-------EEYGIDILKVQ 37 (167)
T ss_dssp CEEEEEEEETT-------EEEEEEGGGEE
T ss_pred CcEEEEEEECC-------EEEEEEHHHee
Confidence 44788899984 79999988653
No 24
>1j26_A Immature colon carcinoma transcript 1; peptide chain release factors, RF-1, the GGQ motif, immature carcinoma transcript 1; NMR {Mus musculus} SCOP: d.50.4.1
Probab=20.92 E-value=59 Score=21.88 Aligned_cols=52 Identities=13% Similarity=0.207 Sum_probs=35.0
Q ss_pred eeEEEEecC-CCCchHHHHHHHHHHHhcCcCCCCCeEecccH---------HHHHHHHHHHhhc
Q 034194 28 SRKFVIPIS-HLYHPLFGQLLEKAREVYGYNTDGPLRLPCSV---------DDFLHLQWRIERE 81 (101)
Q Consensus 28 ~kRfvVpv~-~L~hP~F~~LL~~AeEEfGf~~~G~L~IPC~~---------~~Fe~vl~~i~~~ 81 (101)
+=||-+|.. .|.-..-..|++.+.. -...+|.|+|-|+. ..++.+..+|...
T Consensus 45 ~Lrf~i~t~~~Lp~~~k~rl~~~~~~--ri~~~G~ivv~~q~~RSQ~~Nr~~Al~rL~~~l~~a 106 (112)
T 1j26_A 45 EVRFHLASADWIEEPVRQKIALTHKN--KINKAGELVLTSESSRYQFRNLAECLQKIRDMIAEA 106 (112)
T ss_dssp EEEEEGGGCTTSCHHHHHHHHHHTTT--TBCSSSEEEEEECCCSSHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEeccccccCCHHHHHHHHHhhcc--ccccCCeEEEEECCccCHHHHHHHHHHHHHHHHHHh
Confidence 457888884 7877777777776422 22478999999974 3466666666543
No 25
>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A
Probab=20.24 E-value=95 Score=19.39 Aligned_cols=47 Identities=15% Similarity=0.132 Sum_probs=36.1
Q ss_pred eEEEEecCCC--CchHHHHHHHHHHHhcCcCCCCCeEec-ccHHHHHHHHHHHhhcCC
Q 034194 29 RKFVIPISHL--YHPLFGQLLEKAREVYGYNTDGPLRLP-CSVDDFLHLQWRIERESN 83 (101)
Q Consensus 29 kRfvVpv~~L--~hP~F~~LL~~AeEEfGf~~~G~L~IP-C~~~~Fe~vl~~i~~~~~ 83 (101)
++|-+.-..| ..|.|++++.. ....++|+ .+...|+.++..+-....
T Consensus 38 ~~f~aHk~vLaa~S~yF~~~f~~--------~~~~i~l~~~~~~~f~~ll~~~Ytg~~ 87 (121)
T 1buo_A 38 QEFHAHRTVLACTSKMFEILFHR--------NSQHYTLDFLSPKTFQQILEYAYTATL 87 (121)
T ss_dssp CEEEECHHHHHHHCHHHHHHTTS--------CCSEEEECSSCHHHHHHHHHHHHHSCC
T ss_pred EEEehhHHHHhhcCHHHHHHHcC--------CCcEEEeCCCCHHHHHHHHHhhcCCCc
Confidence 6777777766 67999998853 25678888 788999999998876544
No 26
>1yu8_X Villin; alpha helix, 3-10 helix, structural protein; 1.45A {Gallus gallus} SCOP: a.14.1.1 PDB: 1qqv_A 1yu5_X 2rjx_A 2rjy_A 1yu7_X 2rjv_A 2rjw_A 3nkj_A 3myc_A 3mya_A 3mye_X 1unc_A
Probab=20.19 E-value=22 Score=22.22 Aligned_cols=19 Identities=21% Similarity=0.403 Sum_probs=18.0
Q ss_pred CCCCchHHHHHHHHHHHhc
Q 034194 36 SHLYHPLFGQLLEKAREVY 54 (101)
Q Consensus 36 ~~L~hP~F~~LL~~AeEEf 54 (101)
.||+.-.|++++.++.+||
T Consensus 31 ~yLsdedF~~vFgms~~eF 49 (67)
T 1yu8_X 31 NHLSDEDFKAVFGMTRSAF 49 (67)
T ss_dssp GGSCHHHHHHHHSSCHHHH
T ss_pred hcCCHHHHHHHHCcCHHHH
Confidence 6999999999999999998
Done!