Query 034194
Match_columns 101
No_of_seqs 108 out of 607
Neff 4.2
Searched_HMMs 13730
Date Mon Mar 25 18:30:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034194.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/034194hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1tjya_ c.93.1.1 (A:) AI-2 rec 44.7 11 0.0008 24.4 3.7 31 27-57 2-35 (316)
2 d1y6ia2 a.261.1.1 (A:83-233) M 43.2 0.39 2.8E-05 33.0 -4.2 31 8-45 118-148 (151)
3 d1unda_ a.14.1.1 (A:) Advillin 40.6 3.2 0.00023 22.0 0.3 18 37-54 1-18 (36)
4 d1z3xa2 a.261.1.1 (A:88-235) G 35.6 0.47 3.4E-05 32.4 -4.7 30 8-44 118-147 (148)
5 d2bkfa1 d.15.2.2 (A:1-85) Next 31.6 29 0.0021 21.0 3.9 45 27-73 14-67 (85)
6 d1nn7a_ d.42.1.2 (A:) Potassiu 25.7 6.9 0.0005 24.1 0.0 60 15-83 2-63 (105)
7 d3d37a1 b.106.1.1 (A:6-178) Ba 25.0 23 0.0017 22.4 2.6 22 43-64 146-171 (173)
8 d1qusa_ d.2.1.6 (A:) 36 kDa so 22.4 23 0.0017 26.0 2.5 24 35-58 13-36 (322)
9 d2c35b2 d.230.1.1 (B:1-77) N-t 21.0 63 0.0046 18.0 3.9 36 29-64 9-46 (77)
10 d1t2da2 d.162.1.1 (A:151-315) 20.9 53 0.0038 20.5 3.8 32 15-53 126-157 (165)
11 d1yu5x1 a.14.1.1 (X:10-76) Vil 20.4 10 0.00076 22.3 0.1 19 36-54 31-49 (67)
No 1
>d1tjya_ c.93.1.1 (A:) AI-2 receptor LsrB {Salmonella typhi [TaxId: 90370]}
Probab=44.75 E-value=11 Score=24.43 Aligned_cols=31 Identities=10% Similarity=0.068 Sum_probs=24.3
Q ss_pred CeeEEEEecCCCCchHHHHHHH---HHHHhcCcC
Q 034194 27 GSRKFVIPISHLYHPLFGQLLE---KAREVYGYN 57 (101)
Q Consensus 27 ~~kRfvVpv~~L~hP~F~~LL~---~AeEEfGf~ 57 (101)
+.+|..+=+..+++|.|+.+.+ ++++++||+
T Consensus 2 ~~~kI~~i~~~~~npf~~~~~~g~~~~a~~~G~~ 35 (316)
T d1tjya_ 2 SAERIAFIPKLVGVGFFTSGGNGAQEAGKALGID 35 (316)
T ss_dssp CCCEEEEECSSSSSHHHHHHHHHHHHHHHHHTCE
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHHHHcCCE
Confidence 3578888889999999999855 455688874
No 2
>d1y6ia2 a.261.1.1 (A:83-233) Mg-chelatase cofactor Gun4 {Synechocystis sp. pcc 6803 [TaxId: 1148]}
Probab=43.23 E-value=0.39 Score=32.95 Aligned_cols=31 Identities=26% Similarity=0.474 Sum_probs=19.5
Q ss_pred CCCCCceEEEEeccccCCCCeeEEEEecCCCCchHHHH
Q 034194 8 MKVKKGWLAVQVGLEEEDGGSRKFVIPISHLYHPLFGQ 45 (101)
Q Consensus 8 ~~vpkG~~aVyVG~e~~~e~~kRfvVpv~~L~hP~F~~ 45 (101)
...|+||+|+.-.-. + -| +=-+.|+||.|.+
T Consensus 118 l~AP~GHLP~~~~lr---G--~~--~~~~l~~h~~~~~ 148 (151)
T d1y6ia2 118 LSAPQGHLPLLNQLR---G--VR--VAESLYRHPVWSQ 148 (151)
T ss_dssp TTSCTTCCSCCCCTT---C--TH--HHHHHHTSTHHHH
T ss_pred CCCCCCCCCccchhh---h--HH--HHHHHHcCcchhh
Confidence 468999999864211 0 11 3334789998864
No 3
>d1unda_ a.14.1.1 (A:) Advillin {Human (Homo sapiens) [TaxId: 9606]}
Probab=40.62 E-value=3.2 Score=22.01 Aligned_cols=18 Identities=17% Similarity=0.168 Sum_probs=16.1
Q ss_pred CCCchHHHHHHHHHHHhc
Q 034194 37 HLYHPLFGQLLEKAREVY 54 (101)
Q Consensus 37 ~L~hP~F~~LL~~AeEEf 54 (101)
||+.-.|++++.++.+||
T Consensus 1 yLsd~dF~~vFgmsr~eF 18 (36)
T d1unda_ 1 YLSEQDFVSVFGITRGQF 18 (36)
T ss_dssp CCCHHHHHHHHSSCHHHH
T ss_pred CCCHHHHHHHHCcCHHHH
Confidence 788899999999999887
No 4
>d1z3xa2 a.261.1.1 (A:88-235) GUN4-like protein Ycf53 {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=35.65 E-value=0.47 Score=32.37 Aligned_cols=30 Identities=20% Similarity=0.319 Sum_probs=19.0
Q ss_pred CCCCCceEEEEeccccCCCCeeEEEEecCCCCchHHH
Q 034194 8 MKVKKGWLAVQVGLEEEDGGSRKFVIPISHLYHPLFG 44 (101)
Q Consensus 8 ~~vpkG~~aVyVG~e~~~e~~kRfvVpv~~L~hP~F~ 44 (101)
...|+||+|+.-. .+.+-|=-.+|+||.|.
T Consensus 118 l~AP~GHLP~~~~-------lrg~~~~~~~l~h~a~~ 147 (148)
T d1z3xa2 118 LSAPRGHLPLTNQ-------LRGVQVLNALLNHPAWT 147 (148)
T ss_dssp TTSCTTCCSCCCC-------TTCSHHHHHHHTCGGGG
T ss_pred CCCCCCCCCcCCc-------cchHHHHHHHhcCcccc
Confidence 4689999998542 23333444667777663
No 5
>d2bkfa1 d.15.2.2 (A:1-85) Next to BRCA1 gene 1 protein, NBR1 (KIAA0049) {Human (Homo sapiens) [TaxId: 9606]}
Probab=31.56 E-value=29 Score=21.01 Aligned_cols=45 Identities=4% Similarity=0.087 Sum_probs=33.0
Q ss_pred CeeEEEEecCCCCchHHHHHHHHHHHhcCcC---------CCCCeEecccHHHHHH
Q 034194 27 GSRKFVIPISHLYHPLFGQLLEKAREVYGYN---------TDGPLRLPCSVDDFLH 73 (101)
Q Consensus 27 ~~kRfvVpv~~L~hP~F~~LL~~AeEEfGf~---------~~G~L~IPC~~~~Fe~ 73 (101)
+..||.++.. +.+.|.+|..+-+.-||.+ .+--++|.|+.+.=+.
T Consensus 14 dt~RF~ls~~--~~~~~~~L~~~i~~rf~l~~~~lkY~Ddd~e~v~l~~d~dl~E~ 67 (85)
T d2bkfa1 14 EIQSFLVSDP--ENTTWADIEAMVKVSFDLNTIQIKYLDEENEEVSINSQGEYEEA 67 (85)
T ss_dssp EEEEEEESCG--GGCCHHHHHHHHHHHHTCSSEEEEEECTTSCEEEECSHHHHHHH
T ss_pred ceEEEEecCC--CCCcHHHHHHHHHHhcCcccceEEEEcCCCCEEEEecHHHHHHH
Confidence 5899988533 4678999999999888842 2356889998875443
No 6
>d1nn7a_ d.42.1.2 (A:) Potassium channel kv4.2 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=25.71 E-value=6.9 Score=24.06 Aligned_cols=60 Identities=17% Similarity=0.087 Sum_probs=41.8
Q ss_pred EEEEeccccCCCCeeEEEEecCCC-CchHHHHHHHHHHHhcCc-CCCCCeEecccHHHHHHHHHHHhhcCC
Q 034194 15 LAVQVGLEEEDGGSRKFVIPISHL-YHPLFGQLLEKAREVYGY-NTDGPLRLPCSVDDFLHLQWRIERESN 83 (101)
Q Consensus 15 ~aVyVG~e~~~e~~kRfvVpv~~L-~hP~F~~LL~~AeEEfGf-~~~G~L~IPC~~~~Fe~vl~~i~~~~~ 83 (101)
+.+-||. ++|.+..+-| ++|.. +|.+......+ +.+|.+-|--+...|+.||..+.....
T Consensus 2 I~LNVGG-------~~f~t~~~TL~~~p~s--~l~~~~~~~~~~~~~~~~FiDRdp~~F~~IL~ylR~G~l 63 (105)
T d1nn7a_ 2 IVLNVSG-------TRFQTWQDTLERYPDT--LLGSSERDFFYHPETQQYFFDRDPDIFRHILNFYRTGKL 63 (105)
T ss_dssp EEEEETT-------EEEEECHHHHHTSCSS--STTSGGGGGGEEGGGTEEEECSCTTTHHHHHHHHHHSCB
T ss_pred EEEEECC-------EEEEEeHHHHhcCCCC--CccccccccCcCCCCCcEEEeCCHHHHHHHHHHHhcCcc
Confidence 4567883 8999998866 45531 12222332333 468999999999999999999986543
No 7
>d3d37a1 b.106.1.1 (A:6-178) Baseplate protein gpP {Neisseria meningitidis [TaxId: 487]}
Probab=25.00 E-value=23 Score=22.37 Aligned_cols=22 Identities=27% Similarity=0.339 Sum_probs=14.5
Q ss_pred HHHHHHHHHHhcC----cCCCCCeEe
Q 034194 43 FGQLLEKAREVYG----YNTDGPLRL 64 (101)
Q Consensus 43 F~~LL~~AeEEfG----f~~~G~L~I 64 (101)
--+.|++.+++.| |++||.|+|
T Consensus 146 d~~fl~Rla~~~G~~~~~e~dG~Lv~ 171 (173)
T d3d37a1 146 VWQALTHIANSVGLHPWLEPDGTLVV 171 (173)
T ss_dssp HHHHHHHHHHHTTCEEEECTTSCEEE
T ss_pred HHHHHHHHHHHCCCEEEECCCceEEe
Confidence 3445555555566 567999987
No 8
>d1qusa_ d.2.1.6 (A:) 36 kDa soluble lytic transglycosylase, SLT35 {Escherichia coli [TaxId: 562]}
Probab=22.38 E-value=23 Score=26.03 Aligned_cols=24 Identities=17% Similarity=0.241 Sum_probs=21.7
Q ss_pred cCCCCchHHHHHHHHHHHhcCcCC
Q 034194 35 ISHLYHPLFGQLLEKAREVYGYNT 58 (101)
Q Consensus 35 v~~L~hP~F~~LL~~AeEEfGf~~ 58 (101)
-+|.++|-+++++++..+++||+.
T Consensus 13 ~dya~~p~v~~Fi~~la~~~G~s~ 36 (322)
T d1qusa_ 13 GDFANNPNAQQFIDKMVNKHGFDR 36 (322)
T ss_dssp STTTTCHHHHHHHHHHHHHHCCCH
T ss_pred CCcccCHHHHHHHHHHHHHhCCCH
Confidence 368999999999999999999974
No 9
>d2c35b2 d.230.1.1 (B:1-77) N-terminal, heterodimerisation domain of RBP7 (RpoE) {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.99 E-value=63 Score=18.03 Aligned_cols=36 Identities=6% Similarity=-0.061 Sum_probs=28.5
Q ss_pred eEEEEecCCCCchHHHHHHHHHHHhcCcC--CCCCeEe
Q 034194 29 RKFVIPISHLYHPLFGQLLEKAREVYGYN--TDGPLRL 64 (101)
Q Consensus 29 kRfvVpv~~L~hP~F~~LL~~AeEEfGf~--~~G~L~I 64 (101)
...-||.++|+.++-+.|.++..+.|.-. .++++.|
T Consensus 9 d~v~i~P~~~~~~~~~~i~~~L~~~~egk~~~~~G~~i 46 (77)
T d2c35b2 9 HEILLHPRYFGPNLLNTVKQKLFTEVEGTCTGKYGFVI 46 (77)
T ss_dssp EEEEECGGGCCSCHHHHHHHHHHHHHTTCEETTTEEEE
T ss_pred EEEEECHHHhCccHHHHHHHHHHHHhCCEEeCCCCEEE
Confidence 56789999999999999999999988432 4555554
No 10
>d1t2da2 d.162.1.1 (A:151-315) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}
Probab=20.88 E-value=53 Score=20.49 Aligned_cols=32 Identities=19% Similarity=0.135 Sum_probs=21.7
Q ss_pred EEEEeccccCCCCeeEEEEecCCCCchHHHHHHHHHHHh
Q 034194 15 LAVQVGLEEEDGGSRKFVIPISHLYHPLFGQLLEKAREV 53 (101)
Q Consensus 15 ~aVyVG~e~~~e~~kRfvVpv~~L~hP~F~~LL~~AeEE 53 (101)
+||-+|.+ .-.=++++. |+ +.-+++|++|++|
T Consensus 126 ~Pv~lg~~-----Gv~~i~~l~-L~-~~E~~~L~~s~~~ 157 (165)
T d1t2da2 126 TPVVLGAN-----GVEQVIELQ-LN-SEEKAKFDEAIAE 157 (165)
T ss_dssp EEEEEETT-----EEEEECCCC-CC-HHHHHHHHHHHHH
T ss_pred eeEEEcCC-----ceEEEeCCC-CC-HHHHHHHHHHHHH
Confidence 46667753 234467776 65 7788899988876
No 11
>d1yu5x1 a.14.1.1 (X:10-76) Villin {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=20.36 E-value=10 Score=22.34 Aligned_cols=19 Identities=21% Similarity=0.403 Sum_probs=17.9
Q ss_pred CCCCchHHHHHHHHHHHhc
Q 034194 36 SHLYHPLFGQLLEKAREVY 54 (101)
Q Consensus 36 ~~L~hP~F~~LL~~AeEEf 54 (101)
.||+.--|++++.++.+||
T Consensus 31 ~yLsd~dF~~vFgms~~eF 49 (67)
T d1yu5x1 31 NHLSDEDFKAVFGMTRSAF 49 (67)
T ss_dssp GGSCHHHHHHHHSSCHHHH
T ss_pred hhCCHHHHHHHHCcCHHHH
Confidence 6999999999999999998
Done!