Query 034199
Match_columns 101
No_of_seqs 104 out of 396
Neff 6.0
Searched_HMMs 46136
Date Fri Mar 29 10:53:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034199.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/034199hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02290 cytokinin trans-hydro 99.3 6.2E-11 1.3E-15 95.3 11.8 80 17-96 17-97 (516)
2 PTZ00404 cytochrome P450; Prov 97.0 0.001 2.3E-08 53.1 4.6 48 31-96 18-65 (482)
3 KOG0157 Cytochrome P450 CYP4/C 96.9 0.0037 8.1E-08 51.1 6.7 46 40-100 33-78 (497)
4 PLN02302 ent-kaurenoic acid ox 94.3 0.17 3.7E-06 40.2 6.6 38 45-95 45-82 (490)
5 PLN00168 Cytochrome P450; Prov 93.9 0.086 1.9E-06 42.8 4.2 56 27-97 20-75 (519)
6 PLN02183 ferulate 5-hydroxylas 93.8 0.11 2.4E-06 42.1 4.7 48 27-97 26-73 (516)
7 COG3898 Uncharacterized membra 93.6 0.33 7.2E-06 40.3 7.1 51 17-67 54-111 (531)
8 KOG0158 Cytochrome P450 CYP3/C 93.0 0.24 5.2E-06 41.4 5.5 22 41-62 30-51 (499)
9 PLN03234 cytochrome P450 83B1; 93.0 0.15 3.3E-06 40.9 4.2 37 43-96 29-65 (499)
10 PLN02687 flavonoid 3'-monooxyg 91.4 0.25 5.4E-06 40.1 3.7 37 43-97 35-71 (517)
11 PLN02966 cytochrome P450 83A1 90.4 0.19 4.2E-06 40.5 2.2 37 43-96 30-66 (502)
12 PLN02196 abscisic acid 8'-hydr 90.2 0.48 1E-05 37.9 4.3 38 42-96 35-72 (463)
13 PLN02738 carotene beta-ring hy 89.9 0.35 7.6E-06 41.0 3.4 49 31-96 104-168 (633)
14 PLN03112 cytochrome P450 famil 89.1 0.44 9.6E-06 38.4 3.3 35 44-96 34-68 (514)
15 PF07219 HemY_N: HemY protein 87.2 2.7 5.9E-05 27.7 5.7 49 14-66 26-85 (108)
16 KOG0156 Cytochrome P450 CYP2 s 87.1 1.6 3.4E-05 36.3 5.4 39 44-99 28-66 (489)
17 PLN02774 brassinosteroid-6-oxi 86.4 1.6 3.6E-05 34.8 5.1 38 41-96 29-67 (463)
18 PLN02394 trans-cinnamate 4-mon 86.0 1.6 3.5E-05 35.0 4.9 37 43-96 31-67 (503)
19 PLN02971 tryptophan N-hydroxyl 79.5 4.2 9E-05 33.4 5.0 37 44-96 59-96 (543)
20 PF00067 p450: Cytochrome P450 77.8 2.5 5.4E-05 31.8 3.0 37 45-97 2-38 (463)
21 PLN02500 cytochrome P450 90B1 70.4 12 0.00027 30.0 5.4 40 44-96 40-79 (490)
22 TIGR00540 hemY_coli hemY prote 68.4 15 0.00032 29.1 5.5 23 17-39 54-76 (409)
23 PLN02169 fatty acid (omega-1)- 68.4 20 0.00042 29.2 6.2 23 38-60 27-49 (500)
24 PRK10747 putative protoheme IX 67.9 15 0.00033 29.0 5.4 47 17-64 54-108 (398)
25 PLN03195 fatty acid omega-hydr 67.6 19 0.00041 29.1 6.0 19 41-59 29-47 (516)
26 PLN03141 3-epi-6-deoxocathaste 64.7 6.1 0.00013 31.4 2.6 40 45-97 10-49 (452)
27 PLN02655 ent-kaurene oxidase 62.7 5.7 0.00012 31.7 2.1 36 45-97 2-37 (466)
28 PLN02987 Cytochrome P450, fami 56.2 26 0.00056 28.4 4.8 39 45-96 33-71 (472)
29 TIGR02920 acc_sec_Y2 accessory 51.4 37 0.00081 27.5 5.0 31 21-51 288-318 (395)
30 KOG0878 60S ribosomal protein 46.2 6.7 0.00014 27.2 -0.0 54 25-78 30-103 (124)
31 PLN00110 flavonoid 3',5'-hydro 45.5 63 0.0014 26.3 5.5 37 43-97 32-68 (504)
32 PRK12417 secY preprotein trans 44.4 65 0.0014 26.2 5.4 31 20-50 294-324 (404)
33 PF08733 PalH: PalH/RIM21; In 43.8 49 0.0011 26.4 4.6 24 20-47 310-333 (348)
34 PRK01021 lpxB lipid-A-disaccha 42.9 30 0.00065 30.0 3.4 51 33-95 324-382 (608)
35 cd06333 PBP1_ABC-type_HAAT_lik 42.7 72 0.0016 23.5 5.1 62 34-95 203-276 (312)
36 PF13276 HTH_21: HTH-like doma 42.7 26 0.00056 20.3 2.2 20 30-49 38-57 (60)
37 PF15128 T_cell_tran_alt: T-ce 41.7 17 0.00037 23.9 1.4 21 80-100 71-91 (92)
38 PF03115 Astro_capsid: Astrovi 39.7 9.7 0.00021 33.8 0.0 17 35-51 65-81 (787)
39 PF02684 LpxB: Lipid-A-disacch 39.4 38 0.00083 27.3 3.4 50 33-94 96-153 (373)
40 PF04799 Fzo_mitofusin: fzo-li 39.3 9.9 0.00022 27.8 0.0 24 21-44 58-81 (171)
41 PF10281 Ish1: Putative stress 36.6 71 0.0015 17.0 4.4 30 31-63 5-34 (38)
42 PF15643 Tox-PL-2: Papain fold 36.1 30 0.00064 23.3 1.9 23 32-54 25-47 (100)
43 PF06716 DUF1201: Protein of u 35.5 96 0.0021 18.3 4.7 31 1-31 1-31 (54)
44 PRK11677 hypothetical protein; 33.7 1E+02 0.0022 21.5 4.4 23 19-41 18-40 (134)
45 cd00040 CSF2 Granulocyte Macro 33.4 27 0.00058 24.1 1.4 30 30-60 50-81 (121)
46 COG2145 ThiM Hydroxyethylthiaz 33.2 43 0.00093 26.2 2.6 48 49-97 114-162 (265)
47 PTZ00219 Sec61 alpha subunit; 32.3 1.3E+02 0.0028 25.1 5.5 30 21-50 372-406 (474)
48 PF12994 DUF3878: Domain of un 32.0 40 0.00086 26.8 2.3 25 31-55 249-273 (299)
49 COG4578 GutM Glucitol operon a 30.2 1.9E+02 0.0042 20.2 5.4 19 28-46 26-47 (128)
50 smart00040 CSF2 Granulocyte-ma 29.5 33 0.00072 23.6 1.3 30 30-60 50-81 (121)
51 PF13167 GTP-bdg_N: GTP-bindin 28.3 34 0.00075 22.5 1.2 48 45-95 33-82 (95)
52 PF09336 Vps4_C: Vps4 C termin 28.0 38 0.00083 20.3 1.3 12 82-93 51-62 (62)
53 PF11823 DUF3343: Protein of u 26.6 55 0.0012 19.8 1.8 18 33-50 15-35 (73)
54 TIGR02876 spore_yqfD sporulati 26.3 2.3E+02 0.0049 22.9 5.8 33 30-63 116-148 (382)
55 cd06349 PBP1_ABC_ligand_bindin 25.7 2E+02 0.0043 21.4 5.1 62 34-95 205-270 (340)
56 COG0011 Uncharacterized conser 25.4 1.1E+02 0.0024 20.4 3.3 36 34-69 25-63 (100)
57 PRK10604 sensor protein RstB; 24.2 3.6E+02 0.0077 21.2 7.4 18 26-43 158-175 (433)
58 PF13625 Helicase_C_3: Helicas 24.2 1.1E+02 0.0024 20.3 3.2 39 55-99 56-94 (129)
59 COG5567 Predicted small peripl 24.1 1.5E+02 0.0032 18.0 3.3 14 38-51 16-29 (58)
60 PRK08476 F0F1 ATP synthase sub 23.5 1.4E+02 0.0031 20.4 3.7 13 22-34 21-33 (141)
61 PF05552 TM_helix: Conserved T 22.6 1.6E+02 0.0035 16.7 5.0 26 14-45 24-49 (53)
62 PF13986 DUF4224: Domain of un 22.5 75 0.0016 18.1 1.8 15 30-44 15-29 (47)
63 COG2454 Uncharacterized conser 22.3 63 0.0014 24.4 1.8 17 33-49 147-163 (211)
64 PLN02232 ubiquinone biosynthes 22.3 68 0.0015 22.1 1.9 29 29-57 125-153 (160)
65 PF00558 Vpu: Vpu protein; In 21.9 1.5E+02 0.0033 19.1 3.3 9 19-27 20-28 (81)
66 PF02631 RecX: RecX family; I 21.7 67 0.0015 21.0 1.7 17 30-46 43-59 (121)
67 COG0683 LivK ABC-type branched 21.4 1.2E+02 0.0025 23.6 3.2 60 35-94 219-283 (366)
68 PTZ00200 cysteine proteinase; 21.0 1E+02 0.0022 25.6 2.9 54 32-96 77-137 (448)
69 CHL00161 secY preprotein trans 20.6 2.9E+02 0.0063 22.5 5.4 27 24-50 312-338 (417)
70 PF13691 Lactamase_B_4: tRNase 20.6 47 0.001 20.2 0.7 22 48-69 21-43 (63)
71 PRK14471 F0F1 ATP synthase sub 20.6 1.6E+02 0.0034 20.4 3.5 12 23-34 23-34 (164)
72 PF10960 DUF2762: Protein of u 20.3 1.8E+02 0.0039 18.1 3.3 9 1-9 1-9 (71)
73 KOG4631 NADH:ubiquinone oxidor 20.2 71 0.0015 21.3 1.5 17 34-50 27-43 (100)
74 PF04995 CcmD: Heme exporter p 20.1 1.8E+02 0.0039 16.2 4.5 19 24-42 21-39 (46)
No 1
>PLN02290 cytokinin trans-hydroxylase
Probab=99.28 E-value=6.2e-11 Score=95.28 Aligned_cols=80 Identities=19% Similarity=0.402 Sum_probs=69.2
Q ss_pred HHHHHHHHHHHHHhchHHHHHHHHHcCCCCCCCccCCCCHHHHHHHHHHhhcCCCC-CCCCccccccchHHHHHHHhcCc
Q 034199 17 VLTWAWRVLNWVWLRPKKLEKFLRQQGLKGNSYRLLFGDLKENSIELKEAKARPLS-LDDNIAIRVNPFLHKLVRILSCG 95 (101)
Q Consensus 17 ~~~~~~~~l~~lw~~P~rl~r~Lr~QGI~GPpy~fl~Gn~~E~~~~~~~a~s~p~~-~sHDi~prV~P~~~~w~~~YG~~ 95 (101)
+.-++++.++.+.|+|+|+++.++++|+.||++.+++||+.++.....++..++++ ..+|+..+..+++.+|.++||+.
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~PGP~~~P~iGnl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yG~i 96 (516)
T PLN02290 17 LLRVAYDTISCYFLTPRRIKKIMERQGVRGPKPRPLTGNILDVSALVSQSTSKDMDSIHHDIVGRLLPHYVAWSKQYGKR 96 (516)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHcCCCCCCCCcCCCCHHHHHHHHHHhhcCCCCCCCcccccccchHHHHHHHHhCCe
Confidence 44467788899999999999999999999999999999999998766666666666 46888888999999999999997
Q ss_pred c
Q 034199 96 L 96 (101)
Q Consensus 96 ~ 96 (101)
+
T Consensus 97 ~ 97 (516)
T PLN02290 97 F 97 (516)
T ss_pred E
Confidence 6
No 2
>PTZ00404 cytochrome P450; Provisional
Probab=97.01 E-value=0.001 Score=53.11 Aligned_cols=48 Identities=19% Similarity=0.116 Sum_probs=36.4
Q ss_pred chHHHHHHHHHcCCCCCCCccCCCCHHHHHHHHHHhhcCCCCCCCCccccccchHHHHHHHhcCcc
Q 034199 31 RPKKLEKFLRQQGLKGNSYRLLFGDLKENSIELKEAKARPLSLDDNIAIRVNPFLHKLVRILSCGL 96 (101)
Q Consensus 31 ~P~rl~r~Lr~QGI~GPpy~fl~Gn~~E~~~~~~~a~s~p~~~sHDi~prV~P~~~~w~~~YG~~~ 96 (101)
.+.+..+++++++|.||++-.++||+.++.+ ...-++++|.++||+.+
T Consensus 18 ~~~~~~~~~~~~~~pgp~~~p~~G~~~~~~~------------------~~~~~~~~~~~~yG~i~ 65 (482)
T PTZ00404 18 NAYKKYKKIHKNELKGPIPIPILGNLHQLGN------------------LPHRDLTKMSKKYGGIF 65 (482)
T ss_pred HHHHHhhhccCCCCCCCCCCCeeccHhhhcc------------------cHHHHHHHHHHHhCCee
Confidence 3455666799999999998889999877632 01246789999999865
No 3
>KOG0157 consensus Cytochrome P450 CYP4/CYP19/CYP26 subfamilies [Secondary metabolites biosynthesis, transport and catabolism; Lipid transport and metabolism]
Probab=96.86 E-value=0.0037 Score=51.07 Aligned_cols=46 Identities=17% Similarity=0.093 Sum_probs=37.8
Q ss_pred HHcCCCCCCCccCCCCHHHHHHHHHHhhcCCCCCCCCccccccchHHHHHHHhcCcccccC
Q 034199 40 RQQGLKGNSYRLLFGDLKENSIELKEAKARPLSLDDNIAIRVNPFLHKLVRILSCGLVRHQ 100 (101)
Q Consensus 40 r~QGI~GPpy~fl~Gn~~E~~~~~~~a~s~p~~~sHDi~prV~P~~~~w~~~YG~~~~~~~ 100 (101)
+.++..||++..++||..|+.++. ....+++.++..+||+.|.-+.
T Consensus 33 ~~~~~~gp~~~P~iG~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~ 78 (497)
T KOG0157|consen 33 KKKLPPGPPGWPLIGNLLEFLKPL---------------EEILDFVTELLSRYGPIFKTWL 78 (497)
T ss_pred HhccCCCCCCCCcccchHHhhcch---------------hHHHHHHHHHHHHcCchhhhhh
Confidence 889999999999999999997642 3457889999999997766554
No 4
>PLN02302 ent-kaurenoic acid oxidase
Probab=94.34 E-value=0.17 Score=40.24 Aligned_cols=38 Identities=11% Similarity=0.157 Sum_probs=24.6
Q ss_pred CCCCCccCCCCHHHHHHHHHHhhcCCCCCCCCccccccchHHHHHHHhcCc
Q 034199 45 KGNSYRLLFGDLKENSIELKEAKARPLSLDDNIAIRVNPFLHKLVRILSCG 95 (101)
Q Consensus 45 ~GPpy~fl~Gn~~E~~~~~~~a~s~p~~~sHDi~prV~P~~~~w~~~YG~~ 95 (101)
.||++-.++||+.++..... .. ....++.+|.++||++
T Consensus 45 Pgp~~~PilG~l~~~~~~~~---------~~----~~~~~~~~~~~kyG~~ 82 (490)
T PLN02302 45 PGDLGWPVIGNMWSFLRAFK---------SS----NPDSFIASFISRYGRT 82 (490)
T ss_pred CCCCCCCccccHHHHHHhcc---------cC----CcHHHHHHHHHHhCCC
Confidence 56666678899887754111 01 1135789999999984
No 5
>PLN00168 Cytochrome P450; Provisional
Probab=93.91 E-value=0.086 Score=42.82 Aligned_cols=56 Identities=14% Similarity=0.046 Sum_probs=38.7
Q ss_pred HHHhchHHHHHHHHHcCCCCCCCccCCCCHHHHHHHHHHhhcCCCCCCCCccccccchHHHHHHHhcCccc
Q 034199 27 WVWLRPKKLEKFLRQQGLKGNSYRLLFGDLKENSIELKEAKARPLSLDDNIAIRVNPFLHKLVRILSCGLV 97 (101)
Q Consensus 27 ~lw~~P~rl~r~Lr~QGI~GPpy~fl~Gn~~E~~~~~~~a~s~p~~~sHDi~prV~P~~~~w~~~YG~~~~ 97 (101)
.+|+.|.+..-+.+.+=..||++-.++||+.++... .+....++.+|.++||+.|-
T Consensus 20 ~~~~~~~~~~~~~~~~lpPgp~~~pl~G~l~~~~~~---------------~~~~~~~~~~~~~~yG~i~~ 75 (519)
T PLN00168 20 LLLGKHGGRGGKKGRRLPPGPPAVPLLGSLVWLTNS---------------SADVEPLLRRLIARYGPVVS 75 (519)
T ss_pred HhhhhhhccCCCCCCCCCcCCCCCcccccHHhhccc---------------cccHHHHHHHHHHHhCCeEE
Confidence 446667777666666667899888899998655210 01235688999999998653
No 6
>PLN02183 ferulate 5-hydroxylase
Probab=93.81 E-value=0.11 Score=42.12 Aligned_cols=48 Identities=10% Similarity=-0.061 Sum_probs=33.4
Q ss_pred HHHhchHHHHHHHHHcCCCCCCCccCCCCHHHHHHHHHHhhcCCCCCCCCccccccchHHHHHHHhcCccc
Q 034199 27 WVWLRPKKLEKFLRQQGLKGNSYRLLFGDLKENSIELKEAKARPLSLDDNIAIRVNPFLHKLVRILSCGLV 97 (101)
Q Consensus 27 ~lw~~P~rl~r~Lr~QGI~GPpy~fl~Gn~~E~~~~~~~a~s~p~~~sHDi~prV~P~~~~w~~~YG~~~~ 97 (101)
.+|.++.|- .+-+.||+.-.++||+.++.+ + ..+++.+|.++||+.|-
T Consensus 26 ~~~~~~~~~-----~~~ppgp~~~Pl~G~l~~~~~--------------~----~~~~~~~~~~~yG~i~~ 73 (516)
T PLN02183 26 GLISRLRRR-----LPYPPGPKGLPIIGNMLMMDQ--------------L----THRGLANLAKQYGGLFH 73 (516)
T ss_pred HHHhhccCC-----CCCCcCCCCCCeeccHHhcCC--------------c----chHHHHHHHHHhCCeeE
Confidence 446655552 467889998889999866521 0 12478999999998763
No 7
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=93.62 E-value=0.33 Score=40.33 Aligned_cols=51 Identities=20% Similarity=0.402 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHhchHHHHHHHH----HcCCCCCCCccCC---CCHHHHHHHHHHhh
Q 034199 17 VLTWAWRVLNWVWLRPKKLEKFLR----QQGLKGNSYRLLF---GDLKENSIELKEAK 67 (101)
Q Consensus 17 ~~~~~~~~l~~lw~~P~rl~r~Lr----~QGI~GPpy~fl~---Gn~~E~~~~~~~a~ 67 (101)
.+.++|++++++|-.|++++|.|| .||++--+--|+. ||-.+-.+|.+++.
T Consensus 54 av~llwwlv~~iw~sP~t~~Ryfr~rKRdrgyqALStGliAagAGda~lARkmt~~~~ 111 (531)
T COG3898 54 AVLLLWWLVRSIWESPYTARRYFRERKRDRGYQALSTGLIAAGAGDASLARKMTARAS 111 (531)
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhhhhhhhccCchHHHHHHHHHHH
Confidence 345678999999999999999875 7999877777774 89999888877653
No 8
>KOG0158 consensus Cytochrome P450 CYP3/CYP5/CYP6/CYP9 subfamilies [Secondary metabolites biosynthesis, transport and catabolism]
Probab=93.03 E-value=0.24 Score=41.43 Aligned_cols=22 Identities=18% Similarity=0.295 Sum_probs=19.1
Q ss_pred HcCCCCCCCccCCCCHHHHHHH
Q 034199 41 QQGLKGNSYRLLFGDLKENSIE 62 (101)
Q Consensus 41 ~QGI~GPpy~fl~Gn~~E~~~~ 62 (101)
+-||.||+|..++||++.+.+.
T Consensus 30 rrGi~~~~p~p~~Gn~~~~~~~ 51 (499)
T KOG0158|consen 30 RRGIPGPKPLPFLGNLPGMLKR 51 (499)
T ss_pred cCCCCCCCCCCcEecHHHHHhc
Confidence 3399999999999999998764
No 9
>PLN03234 cytochrome P450 83B1; Provisional
Probab=92.97 E-value=0.15 Score=40.86 Aligned_cols=37 Identities=16% Similarity=0.140 Sum_probs=27.3
Q ss_pred CCCCCCCccCCCCHHHHHHHHHHhhcCCCCCCCCccccccchHHHHHHHhcCcc
Q 034199 43 GLKGNSYRLLFGDLKENSIELKEAKARPLSLDDNIAIRVNPFLHKLVRILSCGL 96 (101)
Q Consensus 43 GI~GPpy~fl~Gn~~E~~~~~~~a~s~p~~~sHDi~prV~P~~~~w~~~YG~~~ 96 (101)
.+.||++-.++||+.++.+ + ....++.+|.++||+.|
T Consensus 29 ~pPgp~~~P~iG~~~~~~~-------------~----~~~~~~~~~~~~yG~~~ 65 (499)
T PLN03234 29 LPPGPKGLPIIGNLHQMEK-------------F----NPQHFLFRLSKLYGPIF 65 (499)
T ss_pred CCcCCCCCCeeccHHhcCC-------------C----CccHHHHHHHHHcCCeE
Confidence 4789988888999877621 1 12357899999999976
No 10
>PLN02687 flavonoid 3'-monooxygenase
Probab=91.40 E-value=0.25 Score=40.14 Aligned_cols=37 Identities=11% Similarity=0.023 Sum_probs=25.7
Q ss_pred CCCCCCCccCCCCHHHHHHHHHHhhcCCCCCCCCccccccchHHHHHHHhcCccc
Q 034199 43 GLKGNSYRLLFGDLKENSIELKEAKARPLSLDDNIAIRVNPFLHKLVRILSCGLV 97 (101)
Q Consensus 43 GI~GPpy~fl~Gn~~E~~~~~~~a~s~p~~~sHDi~prV~P~~~~w~~~YG~~~~ 97 (101)
...||++-.++||+.++.+ ....++.+|.++||+.+-
T Consensus 35 ~pPgp~~~P~iG~~~~~~~------------------~~~~~~~~~~~~yG~i~~ 71 (517)
T PLN02687 35 LPPGPRGWPVLGNLPQLGP------------------KPHHTMAALAKTYGPLFR 71 (517)
T ss_pred CCccCCCCCccccHHhcCC------------------chhHHHHHHHHHhCCeeE
Confidence 3557777778899866521 123578999999998653
No 11
>PLN02966 cytochrome P450 83A1
Probab=90.37 E-value=0.19 Score=40.54 Aligned_cols=37 Identities=16% Similarity=0.077 Sum_probs=27.2
Q ss_pred CCCCCCCccCCCCHHHHHHHHHHhhcCCCCCCCCccccccchHHHHHHHhcCcc
Q 034199 43 GLKGNSYRLLFGDLKENSIELKEAKARPLSLDDNIAIRVNPFLHKLVRILSCGL 96 (101)
Q Consensus 43 GI~GPpy~fl~Gn~~E~~~~~~~a~s~p~~~sHDi~prV~P~~~~w~~~YG~~~ 96 (101)
=+.||++-.++||+.++.. .....++.+|.++||+.+
T Consensus 30 ~ppgp~~~p~~G~l~~l~~-----------------~~~~~~~~~~~~~yG~v~ 66 (502)
T PLN02966 30 LPPGPSPLPVIGNLLQLQK-----------------LNPQRFFAGWAKKYGPIL 66 (502)
T ss_pred CCcCCCCCCeeccHHhcCC-----------------CChhHHHHHHHHHhCCeE
Confidence 3688888888999866521 013457899999999976
No 12
>PLN02196 abscisic acid 8'-hydroxylase
Probab=90.21 E-value=0.48 Score=37.92 Aligned_cols=38 Identities=11% Similarity=-0.013 Sum_probs=24.2
Q ss_pred cCCCCCCCccCCCCHHHHHHHHHHhhcCCCCCCCCccccccchHHHHHHHhcCcc
Q 034199 42 QGLKGNSYRLLFGDLKENSIELKEAKARPLSLDDNIAIRVNPFLHKLVRILSCGL 96 (101)
Q Consensus 42 QGI~GPpy~fl~Gn~~E~~~~~~~a~s~p~~~sHDi~prV~P~~~~w~~~YG~~~ 96 (101)
.|..||++-.++||..++.+ . | ..-++.+|.++||+++
T Consensus 35 ~~Ppgp~~~P~iG~~~~~~~--~-----------~----~~~~~~~~~~~yG~i~ 72 (463)
T PLN02196 35 PLPPGTMGWPYVGETFQLYS--Q-----------D----PNVFFASKQKRYGSVF 72 (463)
T ss_pred CCCCCCCCCCccchHHHHHh--c-----------C----HHHHHHHHHHHhhhhh
Confidence 34455555567899876532 0 0 1235889999999865
No 13
>PLN02738 carotene beta-ring hydroxylase
Probab=89.92 E-value=0.35 Score=41.02 Aligned_cols=49 Identities=18% Similarity=0.082 Sum_probs=34.3
Q ss_pred chHHHHHHHHHcCCCCCCCccCCC----------------CHHHHHHHHHHhhcCCCCCCCCccccccchHHHHHHHhcC
Q 034199 31 RPKKLEKFLRQQGLKGNSYRLLFG----------------DLKENSIELKEAKARPLSLDDNIAIRVNPFLHKLVRILSC 94 (101)
Q Consensus 31 ~P~rl~r~Lr~QGI~GPpy~fl~G----------------n~~E~~~~~~~a~s~p~~~sHDi~prV~P~~~~w~~~YG~ 94 (101)
.|..++..|+++||-||....+.+ |+..+.. ..-+-.+++|.++||+
T Consensus 104 ~~~~~~~~~~~~~~pgp~laa~t~~ye~y~~~~~~~~~~G~l~~i~~-----------------g~~~~~l~~lh~kYGp 166 (633)
T PLN02738 104 FPATLRNGLAKLGPPGELLAFLFTWVEAGEGYPKIPEAKGSISAVRG-----------------EAFFIPLYELFLTYGG 166 (633)
T ss_pred chHHHHhhhhhCCCCCchHHHHHcccccccccccCccccCcHHHhcC-----------------chHHHHHHHHHHHhCC
Confidence 588999999999999997554333 3322210 1235678999999998
Q ss_pred cc
Q 034199 95 GL 96 (101)
Q Consensus 95 ~~ 96 (101)
++
T Consensus 167 I~ 168 (633)
T PLN02738 167 IF 168 (633)
T ss_pred EE
Confidence 75
No 14
>PLN03112 cytochrome P450 family protein; Provisional
Probab=89.11 E-value=0.44 Score=38.45 Aligned_cols=35 Identities=14% Similarity=0.021 Sum_probs=25.2
Q ss_pred CCCCCCccCCCCHHHHHHHHHHhhcCCCCCCCCccccccchHHHHHHHhcCcc
Q 034199 44 LKGNSYRLLFGDLKENSIELKEAKARPLSLDDNIAIRVNPFLHKLVRILSCGL 96 (101)
Q Consensus 44 I~GPpy~fl~Gn~~E~~~~~~~a~s~p~~~sHDi~prV~P~~~~w~~~YG~~~ 96 (101)
..||++..++||+.++.+ .-.-++.+|.++||+.+
T Consensus 34 ppgp~~~pl~G~~~~~~~------------------~~~~~~~~~~~kyG~v~ 68 (514)
T PLN03112 34 PPGPPRWPIVGNLLQLGP------------------LPHRDLASLCKKYGPLV 68 (514)
T ss_pred ccCCCCCCeeeeHHhcCC------------------chHHHHHHHHHHhCCeE
Confidence 578888888999866521 00236789999999876
No 15
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=87.20 E-value=2.7 Score=27.68 Aligned_cols=49 Identities=27% Similarity=0.394 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHhchHHHHHHHHH-----------cCCCCCCCccCCCCHHHHHHHHHHh
Q 034199 14 IVTVLTWAWRVLNWVWLRPKKLEKFLRQ-----------QGLKGNSYRLLFGDLKENSIELKEA 66 (101)
Q Consensus 14 ~~~~~~~~~~~l~~lw~~P~rl~r~Lr~-----------QGI~GPpy~fl~Gn~~E~~~~~~~a 66 (101)
++++++.+++++..+|--|.++.+.+++ ||+. .+.-||..+-.+....+
T Consensus 26 ~~~~l~ll~~ll~~~~~~p~~~~~~~~~rr~~ka~~al~~Gl~----al~~G~~~~A~k~~~~a 85 (108)
T PF07219_consen 26 LFVVLYLLLRLLRRLLSLPSRVRRWRRRRRRRKAQRALSRGLI----ALAEGDWQRAEKLLAKA 85 (108)
T ss_pred HHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHH----HHHCCCHHHHHHHHHHH
Confidence 3445567789999999889888554332 3331 24568888877665544
No 16
>KOG0156 consensus Cytochrome P450 CYP2 subfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=87.12 E-value=1.6 Score=36.26 Aligned_cols=39 Identities=13% Similarity=0.053 Sum_probs=29.1
Q ss_pred CCCCCCccCCCCHHHHHHHHHHhhcCCCCCCCCccccccchHHHHHHHhcCccccc
Q 034199 44 LKGNSYRLLFGDLKENSIELKEAKARPLSLDDNIAIRVNPFLHKLVRILSCGLVRH 99 (101)
Q Consensus 44 I~GPpy~fl~Gn~~E~~~~~~~a~s~p~~~sHDi~prV~P~~~~w~~~YG~~~~~~ 99 (101)
-.||++=.++||+.++... -..=.|++|+++||+.+-=|
T Consensus 28 PPGP~~lPiIGnl~~l~~~-----------------~~h~~~~~ls~~yGpi~tl~ 66 (489)
T KOG0156|consen 28 PPGPPPLPIIGNLHQLGSL-----------------PPHRSFRKLSKKYGPVFTLR 66 (489)
T ss_pred CcCCCCCCccccHHHcCCC-----------------chhHHHHHHHHHhCCeEEEE
Confidence 3688888889999887541 12447899999999988433
No 17
>PLN02774 brassinosteroid-6-oxidase
Probab=86.43 E-value=1.6 Score=34.81 Aligned_cols=38 Identities=21% Similarity=0.219 Sum_probs=26.0
Q ss_pred HcCC-CCCCCccCCCCHHHHHHHHHHhhcCCCCCCCCccccccchHHHHHHHhcCcc
Q 034199 41 QQGL-KGNSYRLLFGDLKENSIELKEAKARPLSLDDNIAIRVNPFLHKLVRILSCGL 96 (101)
Q Consensus 41 ~QGI-~GPpy~fl~Gn~~E~~~~~~~a~s~p~~~sHDi~prV~P~~~~w~~~YG~~~ 96 (101)
+.|. .||++-.++||..++.+ . + .-++++|.++||+.+
T Consensus 29 r~~~ppgp~~~P~~G~~~~~~~--~-----~-----------~~~~~~~~~~yG~i~ 67 (463)
T PLN02774 29 KKGLPPGTMGWPLFGETTEFLK--Q-----G-----------PDFMKNQRLRYGSFF 67 (463)
T ss_pred CCCCCCCCCCCCchhhHHHHHH--h-----h-----------HHHHHHHHHHhccCc
Confidence 3466 47776778899877642 0 0 126889999999865
No 18
>PLN02394 trans-cinnamate 4-monooxygenase
Probab=85.96 E-value=1.6 Score=35.03 Aligned_cols=37 Identities=11% Similarity=0.036 Sum_probs=26.8
Q ss_pred CCCCCCCccCCCCHHHHHHHHHHhhcCCCCCCCCccccccchHHHHHHHhcCcc
Q 034199 43 GLKGNSYRLLFGDLKENSIELKEAKARPLSLDDNIAIRVNPFLHKLVRILSCGL 96 (101)
Q Consensus 43 GI~GPpy~fl~Gn~~E~~~~~~~a~s~p~~~sHDi~prV~P~~~~w~~~YG~~~ 96 (101)
-+.||++..++||..++.+ | .....+++|.++||+++
T Consensus 31 ~pPgp~~~p~~g~l~~~~~--------------~---~~~~~~~~~~~~yG~v~ 67 (503)
T PLN02394 31 LPPGPAAVPIFGNWLQVGD--------------D---LNHRNLAEMAKKYGDVF 67 (503)
T ss_pred CCcCCCCCCeeeeHHhcCC--------------C---chhHHHHHHHHHhCCeE
Confidence 3679998899999866521 1 01347889999999875
No 19
>PLN02971 tryptophan N-hydroxylase
Probab=79.47 E-value=4.2 Score=33.41 Aligned_cols=37 Identities=19% Similarity=0.119 Sum_probs=25.5
Q ss_pred CCCCCCccCCCCHHHHHHHHHHhhcCCCCCCCCccccccchHHHHHHHhc-Ccc
Q 034199 44 LKGNSYRLLFGDLKENSIELKEAKARPLSLDDNIAIRVNPFLHKLVRILS-CGL 96 (101)
Q Consensus 44 I~GPpy~fl~Gn~~E~~~~~~~a~s~p~~~sHDi~prV~P~~~~w~~~YG-~~~ 96 (101)
..||++-.++||+.++.+ .+ ....++++|.++|| +.+
T Consensus 59 PPGP~~lPiiGnl~~l~~------------~~----~~~~~l~~~~~~yg~~i~ 96 (543)
T PLN02971 59 PPGPTGFPIVGMIPAMLK------------NR----PVFRWLHSLMKELNTEIA 96 (543)
T ss_pred CcCCCCCCcccchHHhcc------------CC----cHhHHHHHHHHHhCCceE
Confidence 568888888999877632 01 12357899999999 444
No 20
>PF00067 p450: Cytochrome P450 p450 superfamily signature b-class p450 signature mitochondrial p450 signature E-class p450 group I signature E-class p450 group II signature E-class p450 group IV signature; InterPro: IPR001128 Cytochrome P450 enzymes are a superfamily of haem-containing mono-oxygenases that are found in all kingdoms of life, and which show extraordinary diversity in their reaction chemistry. In mammals, these proteins are found primarily in microsomes of hepatocytes and other cell types, where they oxidise steroids, fatty acids and xenobiotics, and are important for the detoxification and clearance of various compounds, as well as for hormone synthesis and breakdown, cholesterol synthesis and vitamin D metabolism. In plants, these proteins are important for the biosynthesis of several compounds such as hormones, defensive compounds and fatty acids. In bacteria, they are important for several metabolic processes, such as the biosynthesis of antibiotic erythromycin in Saccharopolyspora erythraea (Streptomyces erythraeus). Cytochrome P450 enzymes use haem to oxidise their substrates, using protons derived from NADH or NADPH to split the oxygen so a single atom can be added to a substrate. They also require electrons, which they receive from a variety of redox partners. In certain cases, cytochrome P450 can be fused to its redox partner to produce a bi-functional protein, such as with P450BM-3 from Bacillus megaterium [], which has haem and flavin domains. Organisms produce many different cytochrome P450 enzymes (at least 58 in humans), which together with alternative splicing can provide a wide array of enzymes with different substrate and tissue specificities. Individual cytochrome P450 proteins follow the nomenclature: CYP, followed by a number (family), then a letter (subfamily), and another number (protein); e.g. CYP3A4 is the fourth protein in family 3, subfamily A. In general, family members should share >40% identity, while subfamily members should share >55% identity. Cytochrome P450 proteins can also be grouped by two different schemes. One scheme was based on a taxonomic split: class I (prokaryotic/mitochondrial) and class II (eukaryotic microsomes). The other scheme was based on the number of components in the system: class B (3-components) and class E (2-components). These classes merge to a certain degree. Most prokaryotes and mitochondria (and fungal CYP55) have 3-component systems (class I/class B) - a FAD-containing flavoprotein (NAD(P)H-dependent reductase), an iron-sulphur protein and P450. Most eukaryotic microsomes have 2-component systems (class II/class E) - NADPH:P450 reductase (FAD and FMN-containing flavoprotein) and P450. There are exceptions to this scheme, such as 1-component systems that resemble class E enzymes [, , ]. The class E enzymes can be further subdivided into five sequence clusters, groups I-V, each of which may contain more than one cytochrome P450 family (eg, CYP1 and CYP2 are both found in group I). The divergence of the cytochrome P450 superfamily into B- and E-classes, and further divergence into stable clusters within the E-class, appears to be very ancient, occurring before the appearance of eukaryotes. More information about these proteins can be found at Protein of the Month: Cytochrome P450 [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0020037 heme binding, 0055114 oxidation-reduction process; PDB: 2RFC_B 2RFB_A 3EJB_H 3EJE_H 3EJD_H 1N6B_A 1NR6_A 1DT6_A 3EL3_A 3DBG_B ....
Probab=77.83 E-value=2.5 Score=31.81 Aligned_cols=37 Identities=14% Similarity=0.107 Sum_probs=28.1
Q ss_pred CCCCCccCCCCHHHHHHHHHHhhcCCCCCCCCccccccchHHHHHHHhcCccc
Q 034199 45 KGNSYRLLFGDLKENSIELKEAKARPLSLDDNIAIRVNPFLHKLVRILSCGLV 97 (101)
Q Consensus 45 ~GPpy~fl~Gn~~E~~~~~~~a~s~p~~~sHDi~prV~P~~~~w~~~YG~~~~ 97 (101)
.||++-.++||..++.+ .. ...-++++|.++||+++-
T Consensus 2 pgp~~~p~~G~~~~~~~-~~---------------~~~~~~~~~~~kyG~i~~ 38 (463)
T PF00067_consen 2 PGPPPLPILGNLLQFRR-KG---------------NPHEFFRELHKKYGPIFR 38 (463)
T ss_dssp SCSSSBTTTBTHHHHHT-TH---------------HHHHHHHHHHHHHTSEEE
T ss_pred cCCCCcCceeEHHHhcC-CC---------------cHHHHHHHHHHHhCCEEE
Confidence 47888889999999874 11 224578999999999763
No 21
>PLN02500 cytochrome P450 90B1
Probab=70.35 E-value=12 Score=29.96 Aligned_cols=40 Identities=10% Similarity=0.069 Sum_probs=25.6
Q ss_pred CCCCCCccCCCCHHHHHHHHHHhhcCCCCCCCCccccccchHHHHHHHhcCcc
Q 034199 44 LKGNSYRLLFGDLKENSIELKEAKARPLSLDDNIAIRVNPFLHKLVRILSCGL 96 (101)
Q Consensus 44 I~GPpy~fl~Gn~~E~~~~~~~a~s~p~~~sHDi~prV~P~~~~w~~~YG~~~ 96 (101)
..||++-.++||..++.+ . ..|+ +..-++.+|.++||+.+
T Consensus 40 PPgp~~~PiiGn~~~~~~--~--------~~~~---~~~~~~~~~~~~yG~v~ 79 (490)
T PLN02500 40 PPGNMGWPFLGETIGYLK--P--------YSAT---SIGEFMEQHISRYGKIY 79 (490)
T ss_pred CCCCcCCCchhhHHHHHh--h--------cccC---ChHHHHHHHHHHhcccc
Confidence 458888888999855421 0 0111 12345789999999876
No 22
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=68.44 E-value=15 Score=29.08 Aligned_cols=23 Identities=4% Similarity=-0.113 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHhchHHHHHHH
Q 034199 17 VLTWAWRVLNWVWLRPKKLEKFL 39 (101)
Q Consensus 17 ~~~~~~~~l~~lw~~P~rl~r~L 39 (101)
+++++|+++..+|--|.++++.+
T Consensus 54 ~~~~~~~l~~~~~~~p~~~~~~~ 76 (409)
T TIGR00540 54 IIFAFEWGLRRFFRLGAHSRGWF 76 (409)
T ss_pred HHHHHHHHHHHHHHccHHHHHHH
Confidence 34467788888888887765543
No 23
>PLN02169 fatty acid (omega-1)-hydroxylase/midchain alkane hydroxylase
Probab=68.40 E-value=20 Score=29.22 Aligned_cols=23 Identities=13% Similarity=-0.010 Sum_probs=18.8
Q ss_pred HHHHcCCCCCCCccCCCCHHHHH
Q 034199 38 FLRQQGLKGNSYRLLFGDLKENS 60 (101)
Q Consensus 38 ~Lr~QGI~GPpy~fl~Gn~~E~~ 60 (101)
+.|+.|+.||++-.++||+.++.
T Consensus 27 ~~~~~~~p~p~~~pl~G~~~~~~ 49 (500)
T PLN02169 27 HKKPHGQPILKNWPFLGMLPGML 49 (500)
T ss_pred HhccCCCCCCCCCCcccchHHHH
Confidence 34566999999999999997764
No 24
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=67.91 E-value=15 Score=29.03 Aligned_cols=47 Identities=13% Similarity=0.117 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHhchHHHHHHHHHc----C----CCCCCCccCCCCHHHHHHHHH
Q 034199 17 VLTWAWRVLNWVWLRPKKLEKFLRQQ----G----LKGNSYRLLFGDLKENSIELK 64 (101)
Q Consensus 17 ~~~~~~~~l~~lw~~P~rl~r~Lr~Q----G----I~GPpy~fl~Gn~~E~~~~~~ 64 (101)
+++++++++..+|-.|.++++.+++. | .+| --.+.-||..+-.++..
T Consensus 54 ~~~~~~~~~~~~~~~p~~~~~~~~~rr~~~~~~~~~~g-l~a~~eGd~~~A~k~l~ 108 (398)
T PRK10747 54 VLFAIEWLLRRIFRTGARTRGWFVGRKRRRARKQTEQA-LLKLAEGDYQQVEKLMT 108 (398)
T ss_pred HHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHHH-HHHHhCCCHHHHHHHHH
Confidence 34466788888887777665543331 1 111 01133488887665544
No 25
>PLN03195 fatty acid omega-hydroxylase; Provisional
Probab=67.62 E-value=19 Score=29.12 Aligned_cols=19 Identities=26% Similarity=0.295 Sum_probs=14.4
Q ss_pred HcCCCCCCCccCCCCHHHH
Q 034199 41 QQGLKGNSYRLLFGDLKEN 59 (101)
Q Consensus 41 ~QGI~GPpy~fl~Gn~~E~ 59 (101)
++++.||+.-.++||..++
T Consensus 29 ~~~~pgp~~~p~~G~~~~~ 47 (516)
T PLN03195 29 QRNRKGPKSWPIIGAALEQ 47 (516)
T ss_pred ccccCCCCCCCeecchHHH
Confidence 3568899887889997554
No 26
>PLN03141 3-epi-6-deoxocathasterone 23-monooxygenase; Provisional
Probab=64.74 E-value=6.1 Score=31.41 Aligned_cols=40 Identities=15% Similarity=0.102 Sum_probs=25.3
Q ss_pred CCCCCccCCCCHHHHHHHHHHhhcCCCCCCCCccccccchHHHHHHHhcCccc
Q 034199 45 KGNSYRLLFGDLKENSIELKEAKARPLSLDDNIAIRVNPFLHKLVRILSCGLV 97 (101)
Q Consensus 45 ~GPpy~fl~Gn~~E~~~~~~~a~s~p~~~sHDi~prV~P~~~~w~~~YG~~~~ 97 (101)
.||+.-.++||+.++.. .+ ..+| ...++++|.++||++|-
T Consensus 10 pg~~~~P~iG~~~~l~~---~~------~~~~----~~~~~~~~~~~yG~i~~ 49 (452)
T PLN03141 10 KGSLGWPVIGETLDFIS---CA------YSSR----PESFMDKRRSLYGKVFK 49 (452)
T ss_pred CCCCCCCchhhHHHHHh---hc------ccCC----hHHHHHHHHHHhhheee
Confidence 36666677899877633 00 0111 23468899999998764
No 27
>PLN02655 ent-kaurene oxidase
Probab=62.74 E-value=5.7 Score=31.74 Aligned_cols=36 Identities=11% Similarity=-0.006 Sum_probs=26.3
Q ss_pred CCCCCccCCCCHHHHHHHHHHhhcCCCCCCCCccccccchHHHHHHHhcCccc
Q 034199 45 KGNSYRLLFGDLKENSIELKEAKARPLSLDDNIAIRVNPFLHKLVRILSCGLV 97 (101)
Q Consensus 45 ~GPpy~fl~Gn~~E~~~~~~~a~s~p~~~sHDi~prV~P~~~~w~~~YG~~~~ 97 (101)
.||++-.++||+.++.. + ....++.+|.++||+.|-
T Consensus 2 pgp~~lP~iG~l~~~~~------------~-----~~~~~~~~~~~~yG~i~~ 37 (466)
T PLN02655 2 PAVPGLPVIGNLLQLKE------------K-----KPHRTFTKWSEIYGPIYT 37 (466)
T ss_pred cCCCCCCccccHHHcCC------------C-----chhHHHHHHHHHhCCeEE
Confidence 48888778999977631 0 113689999999998753
No 28
>PLN02987 Cytochrome P450, family 90, subfamily A
Probab=56.19 E-value=26 Score=28.40 Aligned_cols=39 Identities=18% Similarity=0.190 Sum_probs=23.6
Q ss_pred CCCCCccCCCCHHHHHHHHHHhhcCCCCCCCCccccccchHHHHHHHhcCcc
Q 034199 45 KGNSYRLLFGDLKENSIELKEAKARPLSLDDNIAIRVNPFLHKLVRILSCGL 96 (101)
Q Consensus 45 ~GPpy~fl~Gn~~E~~~~~~~a~s~p~~~sHDi~prV~P~~~~w~~~YG~~~ 96 (101)
.||.+-.++||..++.+-. .. .| ...++.+|.++||+.+
T Consensus 33 pgp~~~P~iG~~~~~~~~~--~~-------~~----~~~~~~~~~~~yG~v~ 71 (472)
T PLN02987 33 PGSLGLPLVGETLQLISAY--KT-------EN----PEPFIDERVARYGSLF 71 (472)
T ss_pred CCCcCCCchhhHHHHHhhc--cc-------CC----hHHHHHHHHHHhchhh
Confidence 3555567789997764200 00 11 1346789999999865
No 29
>TIGR02920 acc_sec_Y2 accessory Sec system translocase SecY2. Members of this family are restricted to the Firmicutes lineage (low-GC Gram-positive bacteria) and appear to be paralogous to, and much more divergent than, the preprotein translocase SecY. Members include the SecY2 protein of the accessory Sec system in Streptococcus gordonii, involved in export of the highly glycosylated platelet-binding protein GspB.
Probab=51.36 E-value=37 Score=27.47 Aligned_cols=31 Identities=19% Similarity=0.211 Sum_probs=24.2
Q ss_pred HHHHHHHHHhchHHHHHHHHHcCCCCCCCcc
Q 034199 21 AWRVLNWVWLRPKKLEKFLRQQGLKGNSYRL 51 (101)
Q Consensus 21 ~~~~l~~lw~~P~rl~r~Lr~QGI~GPpy~f 51 (101)
+..++..+|..|+.+.+.|++||..=|-.|.
T Consensus 288 fs~fys~i~~nP~diA~~Lkk~g~~IpGiRp 318 (395)
T TIGR02920 288 LSYFFTFVNINPKEISKSFRKSGNYIPGIAP 318 (395)
T ss_pred HHHHHHHheECHHHHHHHHHHCCCCccCcCC
Confidence 3456678899999999999999975554443
No 30
>KOG0878 consensus 60S ribosomal protein L32 [Translation, ribosomal structure and biogenesis]
Probab=46.16 E-value=6.7 Score=27.22 Aligned_cols=54 Identities=20% Similarity=0.382 Sum_probs=30.9
Q ss_pred HHHHHhchH----HHHHHHHHcCC------CCC--------C--CccCCCCHHHHHHHHHHhhcCCCCCCCCcc
Q 034199 25 LNWVWLRPK----KLEKFLRQQGL------KGN--------S--YRLLFGDLKENSIELKEAKARPLSLDDNIA 78 (101)
Q Consensus 25 l~~lw~~P~----rl~r~Lr~QGI------~GP--------p--y~fl~Gn~~E~~~~~~~a~s~p~~~sHDi~ 78 (101)
+...|++|+ |++|+|+.|=. .-+ + -+|++-|.+|..-+....++=.-++.|++.
T Consensus 30 v~~~WrkPrGiDnrVrRRFkgqilMPnIgYgsnKkTrh~lP~G~~kflv~nvkele~Llm~nk~YcaEIAhnVs 103 (124)
T KOG0878|consen 30 VKESWRKPRGIDNRVRRRFKGQILMPNIGYGSNKKTRHMLPNGFKKFLVHNVKELEVLLMHNKTYCAEIAHNVS 103 (124)
T ss_pred hhhhccCCCcchhHHHHHhccceeccccccCCCccceecCChhhhHHhhhhhhHHHHHHHhhHHHHHHHhhccc
Confidence 345799998 88899988843 111 1 126777888765544433322223445543
No 31
>PLN00110 flavonoid 3',5'-hydroxylase (F3'5'H); Provisional
Probab=45.46 E-value=63 Score=26.27 Aligned_cols=37 Identities=16% Similarity=-0.021 Sum_probs=25.6
Q ss_pred CCCCCCCccCCCCHHHHHHHHHHhhcCCCCCCCCccccccchHHHHHHHhcCccc
Q 034199 43 GLKGNSYRLLFGDLKENSIELKEAKARPLSLDDNIAIRVNPFLHKLVRILSCGLV 97 (101)
Q Consensus 43 GI~GPpy~fl~Gn~~E~~~~~~~a~s~p~~~sHDi~prV~P~~~~w~~~YG~~~~ 97 (101)
-..||++-.++||...+.+ + -.-++.+|.++||+++.
T Consensus 32 ~pPgp~~~Pl~G~l~~~~~--------------~----~~~~~~~~~~~yG~i~~ 68 (504)
T PLN00110 32 LPPGPRGWPLLGALPLLGN--------------M----PHVALAKMAKRYGPVMF 68 (504)
T ss_pred CcccCCCCCeeechhhcCC--------------c----hHHHHHHHHHHhCCeEE
Confidence 3567777778899755421 0 12478999999998764
No 32
>PRK12417 secY preprotein translocase subunit SecY; Reviewed
Probab=44.36 E-value=65 Score=26.24 Aligned_cols=31 Identities=13% Similarity=0.053 Sum_probs=24.5
Q ss_pred HHHHHHHHHHhchHHHHHHHHHcCCCCCCCc
Q 034199 20 WAWRVLNWVWLRPKKLEKFLRQQGLKGNSYR 50 (101)
Q Consensus 20 ~~~~~l~~lw~~P~rl~r~Lr~QGI~GPpy~ 50 (101)
.+..++..+|..|+.+.+.||+||--=|..|
T Consensus 294 ~fs~fys~i~~nP~diAe~lkk~g~~IpGiR 324 (404)
T PRK12417 294 LLSYFFSFVNINTKQIAKDMLKSGNYIPGVY 324 (404)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHCCCcccCCC
Confidence 3456778889999999999999997555444
No 33
>PF08733 PalH: PalH/RIM21; InterPro: IPR014844 PalH (also known as RIM21) is a transmembrane protein required for proteolytic cleavage of Rim101/PacC transcription factors which are activated by C-terminal proteolytic processing. Rim101/PacC family proteins play a key role in pH-dependent responses and PalH has been implicated as a pH sensor [].
Probab=43.77 E-value=49 Score=26.36 Aligned_cols=24 Identities=25% Similarity=0.526 Sum_probs=17.2
Q ss_pred HHHHHHHHHHhchHHHHHHHHHcCCCCC
Q 034199 20 WAWRVLNWVWLRPKKLEKFLRQQGLKGN 47 (101)
Q Consensus 20 ~~~~~l~~lw~~P~rl~r~Lr~QGI~GP 47 (101)
.+|-.++.++ ++||+.++|||=|=
T Consensus 310 ivWEWi~rie----~lEr~~ek~~VLGR 333 (348)
T PF08733_consen 310 IVWEWINRIE----RLERKEEKEGVLGR 333 (348)
T ss_pred hHHHhhhHHH----HHHHHHHhcCccCC
Confidence 3444445444 88999999999883
No 34
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=42.89 E-value=30 Score=29.99 Aligned_cols=51 Identities=20% Similarity=0.137 Sum_probs=34.2
Q ss_pred HHHHHHHHHcCCCCC-----CCccCC---CCHHHHHHHHHHhhcCCCCCCCCccccccchHHHHHHHhcCc
Q 034199 33 KKLEKFLRQQGLKGN-----SYRLLF---GDLKENSIELKEAKARPLSLDDNIAIRVNPFLHKLVRILSCG 95 (101)
Q Consensus 33 ~rl~r~Lr~QGI~GP-----py~fl~---Gn~~E~~~~~~~a~s~p~~~sHDi~prV~P~~~~w~~~YG~~ 95 (101)
.|++|++|+.|+++| +|+... |..+.|++. =|-+-.++||=..+-+++|-+
T Consensus 324 lrLAK~lkk~Gi~ipviyYVsPqVWAWR~~Rikki~k~------------vD~ll~IfPFE~~~y~~~gv~ 382 (608)
T PRK01021 324 FLLIKKLRKRGYKGKIVHYVCPSIWAWRPKRKTILEKY------------LDLLLLILPFEQNLFKDSPLR 382 (608)
T ss_pred HHHHHHHHhcCCCCCEEEEECccceeeCcchHHHHHHH------------hhhheecCccCHHHHHhcCCC
Confidence 478899999999888 666654 556666553 233445677777777776643
No 35
>cd06333 PBP1_ABC-type_HAAT_like Type I periplasmic binding component of ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in uptake of amino acids. This subgroup includes the type I periplasmic binding component of ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in uptake of amino acids. Members of this subgroup are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine-binding protein (LIVBP); their ligand specificity has not been determined experimentally, however.
Probab=42.73 E-value=72 Score=23.49 Aligned_cols=62 Identities=19% Similarity=0.083 Sum_probs=33.6
Q ss_pred HHHHHHHHcCCCCCCCccCCCCHHHHHHHHHHhhcCC------------CCCCCCccccccchHHHHHHHhcCc
Q 034199 34 KLEKFLRQQGLKGNSYRLLFGDLKENSIELKEAKARP------------LSLDDNIAIRVNPFLHKLVRILSCG 95 (101)
Q Consensus 34 rl~r~Lr~QGI~GPpy~fl~Gn~~E~~~~~~~a~s~p------------~~~sHDi~prV~P~~~~w~~~YG~~ 95 (101)
.+-+.++++|+++|-...-..+..++.+...++...- .+.+++-.|..-+|..+..++||+.
T Consensus 203 ~~~~~l~~~g~~~p~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~f~~~~~~~~g~~ 276 (312)
T cd06333 203 LPAKNLRERGYKGPIYQTHGVASPDFLRLAGKAAEGAILPAGPVLVADQLPDSDPQKKVALDFVKAYEAKYGAG 276 (312)
T ss_pred HHHHHHHHcCCCCCEEeecCcCcHHHHHHhhHhhcCcEeecccceeeeeCCCCCcchHHHHHHHHHHHHHhCCC
Confidence 3557889999998744322223344544332221111 1111222345677888889999875
No 36
>PF13276 HTH_21: HTH-like domain
Probab=42.70 E-value=26 Score=20.27 Aligned_cols=20 Identities=20% Similarity=0.571 Sum_probs=16.4
Q ss_pred hchHHHHHHHHHcCCCCCCC
Q 034199 30 LRPKKLEKFLRQQGLKGNSY 49 (101)
Q Consensus 30 ~~P~rl~r~Lr~QGI~GPpy 49 (101)
..-+++.+.|++.||..+..
T Consensus 38 v~~krV~RlM~~~gL~~~~r 57 (60)
T PF13276_consen 38 VSRKRVRRLMREMGLRSKRR 57 (60)
T ss_pred ccHHHHHHHHHHcCCcccCC
Confidence 57788999999999987654
No 37
>PF15128 T_cell_tran_alt: T-cell leukemia translocation-altered
Probab=41.68 E-value=17 Score=23.93 Aligned_cols=21 Identities=10% Similarity=0.020 Sum_probs=11.9
Q ss_pred cccchHHHHHHHhcCcccccC
Q 034199 80 RVNPFLHKLVRILSCGLVRHQ 100 (101)
Q Consensus 80 rV~P~~~~w~~~YG~~~~~~~ 100 (101)
-..|++-.|...-|++.-+|+
T Consensus 71 d~~~~~~~We~~~~~~~kthr 91 (92)
T PF15128_consen 71 DTSSHFPGWESAAGDPLKTHR 91 (92)
T ss_pred CCcccCCccccccCCcccccc
Confidence 344555566666666655554
No 38
>PF03115 Astro_capsid: Astrovirus capsid protein precursor; InterPro: IPR004337 The astrovirus genome is apparently organised with nonstructural proteins encoded at the 5' end and structural proteins at the 3' end []. Proteins in this family are encoded by astrovirus ORF2, one of the three astrovirus ORFs (1a, 1b, 2). The proteins contain a viral RNA-dependent RNA polymerase motif []. The 87kDa precursor polyprotein undergoes an intracellular cleavage to form a 79kDa protein. Subsequently, extracellular trypsin cleavage yields the three proteins forming the infectious virion [].; PDB: 3QSQ_A 3TS3_D.
Probab=39.68 E-value=9.7 Score=33.84 Aligned_cols=17 Identities=24% Similarity=0.534 Sum_probs=0.0
Q ss_pred HHHHHHHcCCCCCCCcc
Q 034199 35 LEKFLRQQGLKGNSYRL 51 (101)
Q Consensus 35 l~r~Lr~QGI~GPpy~f 51 (101)
++|.|||||+.||++.+
T Consensus 65 v~~~l~k~g~~GPk~~~ 81 (787)
T PF03115_consen 65 VKRQLRKKGVTGPKPAV 81 (787)
T ss_dssp -----------------
T ss_pred HhhhhhccCCCCCCcce
Confidence 45679999999999987
No 39
>PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=39.40 E-value=38 Score=27.30 Aligned_cols=50 Identities=18% Similarity=0.197 Sum_probs=36.8
Q ss_pred HHHHHHHHHcCCCCC-----CCccCC---CCHHHHHHHHHHhhcCCCCCCCCccccccchHHHHHHHhcC
Q 034199 33 KKLEKFLRQQGLKGN-----SYRLLF---GDLKENSIELKEAKARPLSLDDNIAIRVNPFLHKLVRILSC 94 (101)
Q Consensus 33 ~rl~r~Lr~QGI~GP-----py~fl~---Gn~~E~~~~~~~a~s~p~~~sHDi~prV~P~~~~w~~~YG~ 94 (101)
.|+.|.+|+.|+++| +|+... |..+.+++. =|.+-.++||=..|-+++|-
T Consensus 96 lrlak~lk~~~~~~~viyYI~PqvWAWr~~R~~~i~~~------------~D~ll~ifPFE~~~y~~~g~ 153 (373)
T PF02684_consen 96 LRLAKKLKKRGIPIKVIYYISPQVWAWRPGRAKKIKKY------------VDHLLVIFPFEPEFYKKHGV 153 (373)
T ss_pred HHHHHHHHHhCCCceEEEEECCceeeeCccHHHHHHHH------------HhheeECCcccHHHHhccCC
Confidence 478899999999987 566554 445445442 35567789999999999984
No 40
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=39.25 E-value=9.9 Score=27.81 Aligned_cols=24 Identities=13% Similarity=0.083 Sum_probs=0.0
Q ss_pred HHHHHHHHHhchHHHHHHHHHcCC
Q 034199 21 AWRVLNWVWLRPKKLEKFLRQQGL 44 (101)
Q Consensus 21 ~~~~l~~lw~~P~rl~r~Lr~QGI 44 (101)
..+++..+=|.+++-||.||+|=.
T Consensus 58 ~lYlYERLtWT~~AKER~fK~Qfv 81 (171)
T PF04799_consen 58 GLYLYERLTWTNKAKERAFKRQFV 81 (171)
T ss_dssp ------------------------
T ss_pred HHHHHHHHhcCchHHHHHHHHHHH
Confidence 344555666999999999999955
No 41
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=36.60 E-value=71 Score=17.04 Aligned_cols=30 Identities=13% Similarity=0.097 Sum_probs=22.0
Q ss_pred chHHHHHHHHHcCCCCCCCccCCCCHHHHHHHH
Q 034199 31 RPKKLEKFLRQQGLKGNSYRLLFGDLKENSIEL 63 (101)
Q Consensus 31 ~P~rl~r~Lr~QGI~GPpy~fl~Gn~~E~~~~~ 63 (101)
.=..|+..|.++||.-|+.. .+-.|+.++.
T Consensus 5 s~~~L~~wL~~~gi~~~~~~---~~rd~Ll~~~ 34 (38)
T PF10281_consen 5 SDSDLKSWLKSHGIPVPKSA---KTRDELLKLA 34 (38)
T ss_pred CHHHHHHHHHHcCCCCCCCC---CCHHHHHHHH
Confidence 44578899999999988876 5556665543
No 42
>PF15643 Tox-PL-2: Papain fold toxin 2
Probab=36.12 E-value=30 Score=23.29 Aligned_cols=23 Identities=39% Similarity=0.720 Sum_probs=17.7
Q ss_pred hHHHHHHHHHcCCCCCCCccCCC
Q 034199 32 PKKLEKFLRQQGLKGNSYRLLFG 54 (101)
Q Consensus 32 P~rl~r~Lr~QGI~GPpy~fl~G 54 (101)
...+.+.|+++||+|---++-.|
T Consensus 25 A~Al~~~L~~~gI~Gk~i~l~T~ 47 (100)
T PF15643_consen 25 ASALKQFLKQAGIPGKIIRLYTG 47 (100)
T ss_pred HHHHHHHHHHCCCCceEEEEEec
Confidence 35788999999999966665554
No 43
>PF06716 DUF1201: Protein of unknown function (DUF1201); InterPro: IPR009591 This entry consists of several Beet yellows virus (BYV) putative membrane-binding proteins of around 54 residues in length. The function of this currently unknown.
Probab=35.47 E-value=96 Score=18.26 Aligned_cols=31 Identities=16% Similarity=0.360 Sum_probs=15.7
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 034199 1 MELPLKSIALTIVIVTVLTWAWRVLNWVWLR 31 (101)
Q Consensus 1 m~~~~~~~l~~~~~~~~~~~~~~~l~~lw~~ 31 (101)
|+.++.+-++..+..++++.+..+..-+|..
T Consensus 1 MDCvLRs~L~~~F~~lIC~Fl~~~~~F~~F~ 31 (54)
T PF06716_consen 1 MDCVLRSYLLLAFGFLICLFLFCLVVFIWFV 31 (54)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666655544444444344444455543
No 44
>PRK11677 hypothetical protein; Provisional
Probab=33.74 E-value=1e+02 Score=21.55 Aligned_cols=23 Identities=22% Similarity=0.081 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHhchHHHHHHHHH
Q 034199 19 TWAWRVLNWVWLRPKKLEKFLRQ 41 (101)
Q Consensus 19 ~~~~~~l~~lw~~P~rl~r~Lr~ 41 (101)
+++.|+...---..+.+++.|.+
T Consensus 18 ~~~~R~~~~~~~~q~~le~eLe~ 40 (134)
T PRK11677 18 AVAMRFGNRKLRQQQALQYELEK 40 (134)
T ss_pred HHHHhhccchhhHHHHHHHHHHH
Confidence 34445444333455666665543
No 45
>cd00040 CSF2 Granulocyte Macrophage Colony Stimulating Factor (GM-CSF) is a member of the large family of polypeptide growth factors called cytokines. It stimulates a wide variety of hematopoietic and nonhematopoietic cell types via binding to members of the cytokine receptor family, mainly the GM-CSF receptor.
Probab=33.39 E-value=27 Score=24.14 Aligned_cols=30 Identities=33% Similarity=0.493 Sum_probs=18.8
Q ss_pred hchHHHHHHHH--HcCCCCCCCccCCCCHHHHH
Q 034199 30 LRPKKLEKFLR--QQGLKGNSYRLLFGDLKENS 60 (101)
Q Consensus 30 ~~P~rl~r~Lr--~QGI~GPpy~fl~Gn~~E~~ 60 (101)
-+|-.++.+|+ +||++|.--+ |-|.+.-|.
T Consensus 50 qepTClQTRL~LYkqGLrGsltk-Lkg~LtmmA 81 (121)
T cd00040 50 QEPTCLQTRLKLYKQGLRGSLTK-LKGPLTMMA 81 (121)
T ss_pred CCccHHHHHHHHHHhhccccHHH-hccHHHHHH
Confidence 46777877665 9999994332 345554443
No 46
>COG2145 ThiM Hydroxyethylthiazole kinase, sugar kinase family [Coenzyme metabolism]
Probab=33.24 E-value=43 Score=26.17 Aligned_cols=48 Identities=13% Similarity=0.005 Sum_probs=34.6
Q ss_pred CccCCCCHHHHHHHHHH-hhcCCCCCCCCccccccchHHHHHHHhcCccc
Q 034199 49 YRLLFGDLKENSIELKE-AKARPLSLDDNIAIRVNPFLHKLVRILSCGLV 97 (101)
Q Consensus 49 y~fl~Gn~~E~~~~~~~-a~s~p~~~sHDi~prV~P~~~~w~~~YG~~~~ 97 (101)
+..+-||..||..+.-+ ...|..|- -+...-..+.-+.+-++||.+.+
T Consensus 114 ~~~IrGN~sEI~~Lag~~~~~kGVDa-~~~~~~~~~~a~~~A~~~~~vvv 162 (265)
T COG2145 114 PAAIRGNASEIAALAGEAGGGKGVDA-GDGAADAIEAAKKAAQKYGTVVV 162 (265)
T ss_pred CcEEeccHHHHHHHhccccccccccc-ccchhhHHHHHHHHHHHhCcEEE
Confidence 45678999999887643 34555553 25556678899999999997654
No 47
>PTZ00219 Sec61 alpha subunit; Provisional
Probab=32.32 E-value=1.3e+02 Score=25.12 Aligned_cols=30 Identities=27% Similarity=0.499 Sum_probs=23.4
Q ss_pred HHHHHHHHH-----hchHHHHHHHHHcCCCCCCCc
Q 034199 21 AWRVLNWVW-----LRPKKLEKFLRQQGLKGNSYR 50 (101)
Q Consensus 21 ~~~~l~~lw-----~~P~rl~r~Lr~QGI~GPpy~ 50 (101)
+..++..+| ..|+.+.+.|++||..=|-.|
T Consensus 372 fs~ffs~~~v~~sg~~p~~iA~~lkk~g~~IpG~R 406 (474)
T PTZ00219 372 SCALFSKTWIEVSGSSAKDVAKQLKDQGMGMVGYR 406 (474)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHcCCCccCcC
Confidence 345667788 699999999999997655544
No 48
>PF12994 DUF3878: Domain of unknown function, E. rectale Gene description (DUF3878); InterPro: IPR024538 This entry represents proteins of unknown function found primarily in Firmicutes. The Eubacterium rectale gene appears to be upregulated in the presence of Bacteroides thetaiotaomicron compared to growth in pure culture [].
Probab=31.96 E-value=40 Score=26.81 Aligned_cols=25 Identities=24% Similarity=0.356 Sum_probs=20.9
Q ss_pred chHHHHHHHHHcCCCCCCCccCCCC
Q 034199 31 RPKKLEKFLRQQGLKGNSYRLLFGD 55 (101)
Q Consensus 31 ~P~rl~r~Lr~QGI~GPpy~fl~Gn 55 (101)
.-+++++.|++||++|--|.+.-++
T Consensus 249 ~~~~~~~~L~e~Gf~G~~p~~~~~~ 273 (299)
T PF12994_consen 249 KRKQAENELKEQGFEGKYPEYQREE 273 (299)
T ss_pred HHHHHHHHHHhcCCcccCcceecCC
Confidence 3566788999999999988887777
No 49
>COG4578 GutM Glucitol operon activator [Transcription]
Probab=30.21 E-value=1.9e+02 Score=20.18 Aligned_cols=19 Identities=21% Similarity=0.518 Sum_probs=11.9
Q ss_pred HHhchHHHHH---HHHHcCCCC
Q 034199 28 VWLRPKKLEK---FLRQQGLKG 46 (101)
Q Consensus 28 lw~~P~rl~r---~Lr~QGI~G 46 (101)
.||.=+|.++ .+..||.-|
T Consensus 26 gwwQ~srfq~af~t~~~~G~vg 47 (128)
T COG4578 26 GWWQWSRFQSAFGTFQNQGYVG 47 (128)
T ss_pred HHHHHHHHHHHHhHHhhCceee
Confidence 3555556655 567899754
No 50
>smart00040 CSF2 Granulocyte-macrophage colony-simulating factor (GM-CSF). GM-CSF stimulates the development of and the cytotoxic activity of white blood cells.
Probab=29.46 E-value=33 Score=23.60 Aligned_cols=30 Identities=33% Similarity=0.493 Sum_probs=18.6
Q ss_pred hchHHHHHHHH--HcCCCCCCCccCCCCHHHHH
Q 034199 30 LRPKKLEKFLR--QQGLKGNSYRLLFGDLKENS 60 (101)
Q Consensus 30 ~~P~rl~r~Lr--~QGI~GPpy~fl~Gn~~E~~ 60 (101)
-+|..++.+|+ +||++|.--+ +-|.+.-|.
T Consensus 50 qeptClQtRL~LYkqGLrGslt~-Lkg~LtmmA 81 (121)
T smart00040 50 QEPTCLQTRLKLYKQGLRGSLTK-LKGPLTMMA 81 (121)
T ss_pred CCCcHHHHHHHHHHhhccccHHH-hhcHHHHHH
Confidence 46777877665 9999994332 345444443
No 51
>PF13167 GTP-bdg_N: GTP-binding GTPase N-terminal
Probab=28.25 E-value=34 Score=22.47 Aligned_cols=48 Identities=15% Similarity=0.203 Sum_probs=29.4
Q ss_pred CCCCCccCCC--CHHHHHHHHHHhhcCCCCCCCCccccccchHHHHHHHhcCc
Q 034199 45 KGNSYRLLFG--DLKENSIELKEAKARPLSLDDNIAIRVNPFLHKLVRILSCG 95 (101)
Q Consensus 45 ~GPpy~fl~G--n~~E~~~~~~~a~s~p~~~sHDi~prV~P~~~~w~~~YG~~ 95 (101)
+-|-|+.++| ...|++.+..+....-+=++|++.|+ +...+.+..|..
T Consensus 33 ~~~~p~~~iG~GK~eei~~~~~~~~~d~vvfd~~Lsp~---Q~rNLe~~~~~~ 82 (95)
T PF13167_consen 33 RKPDPKTYIGSGKVEEIKELIEELDADLVVFDNELSPS---QQRNLEKALGVK 82 (95)
T ss_pred CCCCcceeechhHHHHHHHHHhhcCCCEEEECCCCCHH---HHHHHHHHHCCe
Confidence 4578888874 68888886554322222247888875 445555555543
No 52
>PF09336 Vps4_C: Vps4 C terminal oligomerisation domain; InterPro: IPR015415 This domain is found at the C-terminal of ATPase proteins involved in vacuolar sorting. It forms an alpha helix structure and is required for oligomerisation []. ; PDB: 1XWI_A 3EIH_C 2QPA_C 3EIE_A 2RKO_A 2QP9_X 3MHV_C 3CF3_C 3CF1_A 3CF2_A ....
Probab=28.00 E-value=38 Score=20.34 Aligned_cols=12 Identities=0% Similarity=-0.097 Sum_probs=10.1
Q ss_pred cchHHHHHHHhc
Q 034199 82 NPFLHKLVRILS 93 (101)
Q Consensus 82 ~P~~~~w~~~YG 93 (101)
+=-|.+|.++||
T Consensus 51 l~~ye~w~~~FG 62 (62)
T PF09336_consen 51 LKKYEEWTKEFG 62 (62)
T ss_dssp HHHHHHHHHHTS
T ss_pred HHHHHHHHHHcC
Confidence 446899999998
No 53
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=26.57 E-value=55 Score=19.79 Aligned_cols=18 Identities=33% Similarity=0.482 Sum_probs=14.2
Q ss_pred HHHHHHHHHcCCCC---CCCc
Q 034199 33 KKLEKFLRQQGLKG---NSYR 50 (101)
Q Consensus 33 ~rl~r~Lr~QGI~G---Ppy~ 50 (101)
-+.++.|+++||.+ |.|+
T Consensus 15 ~~~ek~lk~~gi~~~liP~P~ 35 (73)
T PF11823_consen 15 MKAEKLLKKNGIPVRLIPTPR 35 (73)
T ss_pred HHHHHHHHHCCCcEEEeCCCh
Confidence 37789999999977 5555
No 54
>TIGR02876 spore_yqfD sporulation protein YqfD. YqfD is part of the sigma-E regulon in the sporulation program of endospore-forming Gram-positive bacteria. Mutation results in a sporulation defect in Bacillus subtilis. Members are found in all currently known endospore-forming bacteria, including the genera Bacillus, Symbiobacterium, Carboxydothermus, Clostridium, and Thermoanaerobacter.
Probab=26.28 E-value=2.3e+02 Score=22.87 Aligned_cols=33 Identities=21% Similarity=0.382 Sum_probs=24.4
Q ss_pred hchHHHHHHHHHcCCCCCCCccCCCCHHHHHHHH
Q 034199 30 LRPKKLEKFLRQQGLKGNSYRLLFGDLKENSIEL 63 (101)
Q Consensus 30 ~~P~rl~r~Lr~QGI~GPpy~fl~Gn~~E~~~~~ 63 (101)
..+..+.+.|++.||+=-.+++-+ |..++.+-.
T Consensus 116 ~t~~~i~~~L~e~Gi~~G~~k~~i-d~~~ie~~l 148 (382)
T TIGR02876 116 ETPYEIRKQLKEMGIKPGVWKFSV-DVYKLERKL 148 (382)
T ss_pred CCHHHHHHHHHHcCCCcCeeeCCC-CHHHHHHHH
Confidence 589999999999999833444444 887776643
No 55
>cd06349 PBP1_ABC_ligand_binding_like_14 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=25.66 E-value=2e+02 Score=21.44 Aligned_cols=62 Identities=11% Similarity=-0.037 Sum_probs=32.0
Q ss_pred HHHHHHHHcCCCCCCCccCCCCHHHHHHHHHHhhcC---CCCC-CCCccccccchHHHHHHHhcCc
Q 034199 34 KLEKFLRQQGLKGNSYRLLFGDLKENSIELKEAKAR---PLSL-DDNIAIRVNPFLHKLVRILSCG 95 (101)
Q Consensus 34 rl~r~Lr~QGI~GPpy~fl~Gn~~E~~~~~~~a~s~---p~~~-sHDi~prV~P~~~~w~~~YG~~ 95 (101)
.+-+.+++||+.+|-+..-...-.+..++..++... ..+. ..+-.|....|..++.++||..
T Consensus 205 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~ 270 (340)
T cd06349 205 PIARQARAVGLDIPVVASSSVYSPKFIELGGDAVEGVYTPTAFFPGDPRPEVQSFVSAYEAKYGAQ 270 (340)
T ss_pred HHHHHHHHcCCCCcEEccCCcCCHHHHHHhHHHhCCcEEecccCCCCCCHHHHHHHHHHHHHHCCC
Confidence 455789999998764432111223343332221111 1111 1112455677888898899853
No 56
>COG0011 Uncharacterized conserved protein [Function unknown]
Probab=25.39 E-value=1.1e+02 Score=20.40 Aligned_cols=36 Identities=28% Similarity=0.360 Sum_probs=28.2
Q ss_pred HHHHHHHHcCC---CCCCCccCCCCHHHHHHHHHHhhcC
Q 034199 34 KLEKFLRQQGL---KGNSYRLLFGDLKENSIELKEAKAR 69 (101)
Q Consensus 34 rl~r~Lr~QGI---~GPpy~fl~Gn~~E~~~~~~~a~s~ 69 (101)
+..+.|+++|+ -||-.+.+=||+.|+.+..+++...
T Consensus 25 ~~i~~lk~~glky~~~pm~T~iEg~~del~~~ik~~~Ea 63 (100)
T COG0011 25 EAIEILKESGLKYQLGPMGTVIEGELDELMEAVKEAHEA 63 (100)
T ss_pred HHHHHHHHcCCceeecCcceEEEecHHHHHHHHHHHHHH
Confidence 45678999998 4888888889999988776665433
No 57
>PRK10604 sensor protein RstB; Provisional
Probab=24.25 E-value=3.6e+02 Score=21.22 Aligned_cols=18 Identities=28% Similarity=0.298 Sum_probs=8.9
Q ss_pred HHHHhchHHHHHHHHHcC
Q 034199 26 NWVWLRPKKLEKFLRQQG 43 (101)
Q Consensus 26 ~~lw~~P~rl~r~Lr~QG 43 (101)
+.+|..-+++++..++-|
T Consensus 158 ~~~~r~l~~L~~~~~~~~ 175 (433)
T PRK10604 158 RPHWQDMLKLEAAAQRLG 175 (433)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 334433355666665444
No 58
>PF13625 Helicase_C_3: Helicase conserved C-terminal domain
Probab=24.18 E-value=1.1e+02 Score=20.32 Aligned_cols=39 Identities=10% Similarity=-0.004 Sum_probs=27.6
Q ss_pred CHHHHHHHHHHhhcCCCCCCCCccccccchHHHHHHHhcCccccc
Q 034199 55 DLKENSIELKEAKARPLSLDDNIAIRVNPFLHKLVRILSCGLVRH 99 (101)
Q Consensus 55 n~~E~~~~~~~a~s~p~~~sHDi~prV~P~~~~w~~~YG~~~~~~ 99 (101)
+..||.+...+.. .+++-..|.=.+.+|.+.||+.-++.
T Consensus 56 ~~e~i~~~L~~~S------~~~lP~~v~~~i~~w~~~~g~v~l~~ 94 (129)
T PF13625_consen 56 TAEEIIEFLERYS------KNPLPQNVEQSIEDWARRYGRVRLYK 94 (129)
T ss_pred CHHHHHHHHHHHc------CCCCCHHHHHHHHHHHHhcCCEEEec
Confidence 4567776555432 25555677889999999999987753
No 59
>COG5567 Predicted small periplasmic lipoprotein [Cell motility and secretion]
Probab=24.13 E-value=1.5e+02 Score=18.01 Aligned_cols=14 Identities=43% Similarity=0.403 Sum_probs=10.8
Q ss_pred HHHHcCCCCCCCcc
Q 034199 38 FLRQQGLKGNSYRL 51 (101)
Q Consensus 38 ~Lr~QGI~GPpy~f 51 (101)
.|...|.+||-|=.
T Consensus 16 sLA~CG~KGPLy~P 29 (58)
T COG5567 16 SLAGCGLKGPLYFP 29 (58)
T ss_pred HHHhcccCCCccCC
Confidence 46788999997743
No 60
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=23.48 E-value=1.4e+02 Score=20.38 Aligned_cols=13 Identities=23% Similarity=0.171 Sum_probs=9.0
Q ss_pred HHHHHHHHhchHH
Q 034199 22 WRVLNWVWLRPKK 34 (101)
Q Consensus 22 ~~~l~~lw~~P~r 34 (101)
+-+++.+.|.|.+
T Consensus 21 ~~~l~kfl~kPi~ 33 (141)
T PRK08476 21 IVILNSWLYKPLL 33 (141)
T ss_pred HHHHHHHHHHHHH
Confidence 3466777788875
No 61
>PF05552 TM_helix: Conserved TM helix; InterPro: IPR008910 This alignment represents a conserved transmembrane helix as well as some flanking sequence. It is often found in association with a Mechanosensitive (MS) channel IPR006685 from INTERPRO.; PDB: 2VV5_F 2OAU_E.
Probab=22.64 E-value=1.6e+02 Score=16.66 Aligned_cols=26 Identities=19% Similarity=0.436 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHhchHHHHHHHHHcCCC
Q 034199 14 IVTVLTWAWRVLNWVWLRPKKLEKFLRQQGLK 45 (101)
Q Consensus 14 ~~~~~~~~~~~l~~lw~~P~rl~r~Lr~QGI~ 45 (101)
++++.+++.+++.. -++|.|++.|+.
T Consensus 24 Il~vG~~va~~v~~------~~~~~l~~~~~d 49 (53)
T PF05552_consen 24 ILIVGWWVAKFVRK------LVRRLLEKRGVD 49 (53)
T ss_dssp HHHHHHHHHHHHHH------HHHHHHHHCTS-
T ss_pred HHHHHHHHHHHHHH------HHHHHHHHcCCc
Confidence 33444555566554 456778888764
No 62
>PF13986 DUF4224: Domain of unknown function (DUF4224)
Probab=22.50 E-value=75 Score=18.08 Aligned_cols=15 Identities=40% Similarity=0.795 Sum_probs=12.9
Q ss_pred hchHHHHHHHHHcCC
Q 034199 30 LRPKKLEKFLRQQGL 44 (101)
Q Consensus 30 ~~P~rl~r~Lr~QGI 44 (101)
-+|.+-.+.|+++||
T Consensus 15 k~~~~Q~~~L~~~Gi 29 (47)
T PF13986_consen 15 KRPSKQIRWLRRNGI 29 (47)
T ss_pred CCHHHHHHHHHHCCC
Confidence 368888899999998
No 63
>COG2454 Uncharacterized conserved protein [Function unknown]
Probab=22.28 E-value=63 Score=24.45 Aligned_cols=17 Identities=18% Similarity=0.501 Sum_probs=14.5
Q ss_pred HHHHHHHHHcCCCCCCC
Q 034199 33 KKLEKFLRQQGLKGNSY 49 (101)
Q Consensus 33 ~rl~r~Lr~QGI~GPpy 49 (101)
.++|+.|+++||.|-.+
T Consensus 147 ~~i~~~mK~~~I~g~~~ 163 (211)
T COG2454 147 GRIEEKMKSLGIPGEAS 163 (211)
T ss_pred HHHHHHHHhcCCCceeE
Confidence 47899999999999655
No 64
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=22.28 E-value=68 Score=22.07 Aligned_cols=29 Identities=17% Similarity=0.299 Sum_probs=25.0
Q ss_pred HhchHHHHHHHHHcCCCCCCCccCCCCHH
Q 034199 29 WLRPKKLEKFLRQQGLKGNSYRLLFGDLK 57 (101)
Q Consensus 29 w~~P~rl~r~Lr~QGI~GPpy~fl~Gn~~ 57 (101)
+..|..+.+.|++.|++.+.++.+.+.+.
T Consensus 125 f~~~~el~~ll~~aGF~~~~~~~~~~g~~ 153 (160)
T PLN02232 125 YLTGEELETLALEAGFSSACHYEISGGFM 153 (160)
T ss_pred CcCHHHHHHHHHHcCCCcceEEECcchHh
Confidence 57899999999999999999988876654
No 65
>PF00558 Vpu: Vpu protein; InterPro: IPR008187 The Human immunodeficiency virus 1 (HIV-1) Vpu protein acts in the degradation of CD4 in the endoplasmic reticulum and in the enhancement of virion release from the plasma membrane of infected cells [].; GO: 0019076 release of virus from host; PDB: 2JPX_A 1PI8_A 2GOH_A 2GOF_A 1PI7_A 1PJE_A 1VPU_A 2K7Y_A.
Probab=21.90 E-value=1.5e+02 Score=19.08 Aligned_cols=9 Identities=11% Similarity=0.468 Sum_probs=3.0
Q ss_pred HHHHHHHHH
Q 034199 19 TWAWRVLNW 27 (101)
Q Consensus 19 ~~~~~~l~~ 27 (101)
.++|..+..
T Consensus 20 IvvW~iv~i 28 (81)
T PF00558_consen 20 IVVWTIVYI 28 (81)
T ss_dssp HHHHHHH--
T ss_pred HHHHHHHHH
Confidence 344444433
No 66
>PF02631 RecX: RecX family; InterPro: IPR003783 RecX is a putative bacterial regulatory protein []. The gene encoding RecX is found downstream of recA, and it is suggested that the RecX protein might be regulator of RecA activity by interaction with the RecA protein or filament [].; GO: 0006282 regulation of DNA repair; PDB: 3DFG_A 3D5L_B 3C1D_B 3E3V_A.
Probab=21.68 E-value=67 Score=21.05 Aligned_cols=17 Identities=24% Similarity=0.610 Sum_probs=12.3
Q ss_pred hchHHHHHHHHHcCCCC
Q 034199 30 LRPKKLEKFLRQQGLKG 46 (101)
Q Consensus 30 ~~P~rl~r~Lr~QGI~G 46 (101)
+.|++|+..|++.||..
T Consensus 43 ~G~~~I~~~L~~kGi~~ 59 (121)
T PF02631_consen 43 KGPRRIRQKLKQKGIDR 59 (121)
T ss_dssp --HHHHHHHHHHTT--H
T ss_pred ccHHHHHHHHHHHCCCh
Confidence 68999999999999954
No 67
>COG0683 LivK ABC-type branched-chain amino acid transport systems, periplasmic component [Amino acid transport and metabolism]
Probab=21.40 E-value=1.2e+02 Score=23.59 Aligned_cols=60 Identities=15% Similarity=-0.030 Sum_probs=35.9
Q ss_pred HHHHHHHcCCCCCCCccCCCCHHHHHHHHHHhhcC-CC---C-CCCCccccccchHHHHHHHhcC
Q 034199 35 LEKFLRQQGLKGNSYRLLFGDLKENSIELKEAKAR-PL---S-LDDNIAIRVNPFLHKLVRILSC 94 (101)
Q Consensus 35 l~r~Lr~QGI~GPpy~fl~Gn~~E~~~~~~~a~s~-p~---~-~sHDi~prV~P~~~~w~~~YG~ 94 (101)
+-|.++.||+++.-+..-..+..|..+........ .+ . ...+-.|..-+|+.++.++||+
T Consensus 219 ~~r~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~f~~~~~~~~g~ 283 (366)
T COG0683 219 FLRQAREQGLKAKLIGGDGAGTAEFEEIAGAGGAGAGLLATAYSTPDDSPANKKFVEAYKAKYGD 283 (366)
T ss_pred HHHHHHHcCCCCccccccccCchhhhhhcccCccccEEEEecccccccCcchHHHHHHHHHHhCC
Confidence 45789999999987776655555555433321111 10 1 1222334444499999999994
No 68
>PTZ00200 cysteine proteinase; Provisional
Probab=20.96 E-value=1e+02 Score=25.60 Aligned_cols=54 Identities=15% Similarity=0.093 Sum_probs=33.0
Q ss_pred hHHHHHHHHHcCCCCCCCccCCCC-------HHHHHHHHHHhhcCCCCCCCCccccccchHHHHHHHhcCcc
Q 034199 32 PKKLEKFLRQQGLKGNSYRLLFGD-------LKENSIELKEAKARPLSLDDNIAIRVNPFLHKLVRILSCGL 96 (101)
Q Consensus 32 P~rl~r~Lr~QGI~GPpy~fl~Gn-------~~E~~~~~~~a~s~p~~~sHDi~prV~P~~~~w~~~YG~~~ 96 (101)
+..++.+|++ .|...+ ..|+.++. +...++.+++.-.-+.-.|.+|.++|++.+
T Consensus 77 ~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~---~~~~i~~~~~~e~e~~~~F~~f~~ky~K~Y 137 (448)
T PTZ00200 77 KSDLEEHIDK--------DFPRLDKSKRDSYVDELTRLF---KDGYISDDPKLEFEVYLEFEEFNKKYNRKH 137 (448)
T ss_pred HHHHHHHHhc--------cCCCcChhHHHHHHHHHHHHh---hCCCcCCCccchHHHHHHHHHHHHHhCCcC
Confidence 4677778865 233333 33344433 334555555555556678999999999986
No 69
>CHL00161 secY preprotein translocase subunit SecY; Validated
Probab=20.58 E-value=2.9e+02 Score=22.49 Aligned_cols=27 Identities=19% Similarity=0.274 Sum_probs=19.6
Q ss_pred HHHHHHhchHHHHHHHHHcCCCCCCCc
Q 034199 24 VLNWVWLRPKKLEKFLRQQGLKGNSYR 50 (101)
Q Consensus 24 ~l~~lw~~P~rl~r~Lr~QGI~GPpy~ 50 (101)
++..+=..|+.+.+.|++||..=|-.|
T Consensus 312 f~~~i~~~p~~iA~~Lkk~g~~IpGvR 338 (417)
T CHL00161 312 FYSTIVLNPKDISENLQKMAVSIPGIR 338 (417)
T ss_pred HHHHHhcCHHHHHHHHHHCCCcCCCcC
Confidence 333333899999999999997555444
No 70
>PF13691 Lactamase_B_4: tRNase Z endonuclease
Probab=20.57 E-value=47 Score=20.23 Aligned_cols=22 Identities=36% Similarity=0.477 Sum_probs=14.5
Q ss_pred CCccCCCCHHH-HHHHHHHhhcC
Q 034199 48 SYRLLFGDLKE-NSIELKEAKAR 69 (101)
Q Consensus 48 py~fl~Gn~~E-~~~~~~~a~s~ 69 (101)
.-|.++||..| ..|...|.+-+
T Consensus 21 ~~rYlFGn~gEGtQR~~~e~~ik 43 (63)
T PF13691_consen 21 SRRYLFGNCGEGTQRACNEHKIK 43 (63)
T ss_pred CceEEeccCCcHHHHHHHHcCCC
Confidence 45678999999 55555554433
No 71
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=20.57 E-value=1.6e+02 Score=20.41 Aligned_cols=12 Identities=17% Similarity=0.050 Sum_probs=7.4
Q ss_pred HHHHHHHhchHH
Q 034199 23 RVLNWVWLRPKK 34 (101)
Q Consensus 23 ~~l~~lw~~P~r 34 (101)
-+++.+.|.|..
T Consensus 23 ~ll~~~l~~pi~ 34 (164)
T PRK14471 23 LLLAKFAWKPIL 34 (164)
T ss_pred HHHHHHhHHHHH
Confidence 356666777743
No 72
>PF10960 DUF2762: Protein of unknown function (DUF2762); InterPro: IPR024405 BhlA is a SP-beta prophage-derived protein found in Bacillus subtilis [, ] and other Bacilli. A related protein, UviB, has also been described in Clostridia, where it is believed to be involved in bacteriocin secretion or immunity [, ].
Probab=20.26 E-value=1.8e+02 Score=18.12 Aligned_cols=9 Identities=33% Similarity=0.394 Sum_probs=5.5
Q ss_pred CCchHHHHH
Q 034199 1 MELPLKSIA 9 (101)
Q Consensus 1 m~~~~~~~l 9 (101)
||..+.-.+
T Consensus 1 ME~ei~k~~ 9 (71)
T PF10960_consen 1 MEEEIIKLA 9 (71)
T ss_pred ChHHHHHHH
Confidence 666666664
No 73
>KOG4631 consensus NADH:ubiquinone oxidoreductase, NDUFB3/B12 subunit [Energy production and conversion]
Probab=20.19 E-value=71 Score=21.32 Aligned_cols=17 Identities=35% Similarity=0.385 Sum_probs=14.2
Q ss_pred HHHHHHHHcCCCCCCCc
Q 034199 34 KLEKFLRQQGLKGNSYR 50 (101)
Q Consensus 34 rl~r~Lr~QGI~GPpy~ 50 (101)
-++++|.+||++-|--|
T Consensus 27 ~~~k~La~~GLkDPW~R 43 (100)
T KOG4631|consen 27 TIQKKLAAKGLKDPWGR 43 (100)
T ss_pred HHHHHHHHccccCchhc
Confidence 47899999999998654
No 74
>PF04995 CcmD: Heme exporter protein D (CcmD); InterPro: IPR007078 The CcmD protein is part of a C-type cytochrome biogenesis operon []. The exact function of this protein is uncertain. It has been proposed that CcmC, CcmD and CcmE interact directly with each other, establishing a cytoplasm to periplasm haem delivery pathway for cytochrome c maturation []. This protein is found fused to CcmE in P52224 from SWISSPROT. These proteins contain a predicted transmembrane helix.; GO: 0006810 transport, 0016021 integral to membrane
Probab=20.11 E-value=1.8e+02 Score=16.21 Aligned_cols=19 Identities=26% Similarity=0.566 Sum_probs=13.0
Q ss_pred HHHHHHhchHHHHHHHHHc
Q 034199 24 VLNWVWLRPKKLEKFLRQQ 42 (101)
Q Consensus 24 ~l~~lw~~P~rl~r~Lr~Q 42 (101)
++...|++-+++.+.+++|
T Consensus 21 l~~~~~~~~r~~~~~l~~~ 39 (46)
T PF04995_consen 21 LIVWSLRRRRRLRKELKRL 39 (46)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3345567788888877765
Done!