Query 034199
Match_columns 101
No_of_seqs 104 out of 396
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 18:36:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034199.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034199hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3nxu_A Cytochrome P450 3A4; al 96.2 0.0025 8.6E-08 48.5 2.9 42 37-96 9-50 (485)
2 3s79_A Cytochrome P450 19A1; o 94.3 0.025 8.7E-07 43.1 3.0 43 40-96 43-85 (503)
3 3ld6_A Lanosterol 14-alpha dem 89.5 0.26 8.8E-06 37.3 3.3 37 42-96 8-48 (461)
4 3k9v_A 1,25-dihydroxyvitamin D 88.2 0.47 1.6E-05 35.6 3.9 41 43-96 25-65 (482)
5 2cd8_A Cytochrome P450 monooxy 86.5 0.17 5.9E-06 38.6 0.6 37 41-96 25-62 (436)
6 3e6i_A CYPIIE1, P450-J, cytoch 83.0 0.58 2E-05 35.1 2.1 36 44-96 12-47 (476)
7 3swz_A Steroid 17-alpha-hydrox 82.9 0.2 6.9E-06 38.1 -0.4 40 41-96 4-46 (494)
8 2hi4_A Cytochrome P450 1A2; CY 82.3 0.71 2.4E-05 35.3 2.5 36 43-96 17-52 (495)
9 3b98_A Prostaglandin I2 syntha 79.7 0.98 3.3E-05 33.9 2.4 36 43-96 19-55 (475)
10 1po5_A Cytochrome P450 2B4; ox 77.7 1.1 3.7E-05 34.0 2.1 38 42-96 10-47 (476)
11 3i3k_A Lanosterol 14-alpha dem 77.6 1.7 5.7E-05 32.6 3.1 41 38-96 4-48 (461)
12 1r9o_A Cytochrome P450 2C9; mo 77.5 1.2 4E-05 33.7 2.3 38 42-96 11-48 (477)
13 2ij2_A Cytochrome P450 BM3; mo 77.4 1.2 4.2E-05 33.8 2.3 38 42-96 3-40 (470)
14 3pm0_A Cypib1, cytochrome P450 76.9 0.83 2.8E-05 34.5 1.2 37 42-96 9-45 (507)
15 3b6h_A Prostacyclin synthase; 76.8 1.3 4.6E-05 33.5 2.4 36 43-96 19-55 (498)
16 3tbg_A Cytochrome P450 2D6; mo 76.7 1.2 4E-05 33.4 2.0 41 39-96 5-47 (479)
17 3gw9_A Sterol 14alpha-demethyl 74.2 2.3 7.8E-05 31.4 3.1 34 45-96 6-41 (450)
18 3czh_A Cytochrome P450 2R1; vi 71.7 2.4 8.1E-05 32.2 2.7 38 44-96 14-51 (481)
19 2fdv_A Cytochrome P450 2A6; CY 71.5 2 6.9E-05 32.4 2.2 36 44-96 12-47 (476)
20 2cib_A Cytochrome P450 51; hem 69.7 2.5 8.6E-05 31.8 2.4 36 43-96 5-41 (455)
21 3v8d_A Cholesterol 7-alpha-mon 68.2 1.2 4.1E-05 33.8 0.3 35 44-96 15-50 (491)
22 2ve3_A Putative cytochrome P45 64.3 6.7 0.00023 29.3 3.8 35 43-96 13-47 (444)
23 3dan_A Cytochrome P450 74A2; A 61.5 2.3 8E-05 31.8 0.8 41 43-96 10-52 (473)
24 3dax_A Cytochrome P450 7A1; ch 58.6 2.3 7.9E-05 32.0 0.3 14 83-96 37-50 (491)
25 3qz1_A Steroid 21-hydroxylase; 53.7 3.8 0.00013 30.8 0.8 16 81-96 45-60 (496)
26 1izo_A P450bsbeta, cytochrome 53.2 9.7 0.00033 28.2 3.0 31 50-98 8-38 (417)
27 3awm_A Fatty acid alpha-hydrox 49.7 13 0.00045 27.4 3.2 28 51-96 8-36 (415)
28 3dsk_A Cytochrome P450 74A, ch 47.2 6 0.00021 29.8 1.0 41 43-96 29-70 (495)
29 3dbg_A Putative cytochrome P45 40.1 7.9 0.00027 29.0 0.7 34 44-96 25-58 (467)
30 3hpd_A Hydroxyethylthiazole ki 34.5 26 0.00089 25.8 2.7 49 49-97 114-163 (265)
31 1fry_A Myeloid antimicrobial p 31.0 8.9 0.0003 19.1 -0.2 11 89-99 14-24 (29)
32 2wwb_A Protein transport prote 30.3 1.9E+02 0.0067 22.9 7.4 30 22-51 372-406 (476)
33 3me7_A Putative uncharacterize 29.6 55 0.0019 21.2 3.5 34 31-64 77-111 (170)
34 3n9y_A Cholesterol SIDE-chain 27.5 25 0.00087 26.1 1.6 15 82-96 35-49 (487)
35 1vq8_X 50S ribosomal protein L 27.5 27 0.00093 22.1 1.5 18 34-51 54-71 (92)
36 1u57_A GAG polyprotein, HIV-1; 26.4 19 0.00065 19.6 0.6 10 41-50 8-17 (48)
37 1n97_A CYP175A1; electron tran 26.0 8.8 0.0003 28.3 -1.2 34 46-97 3-36 (389)
38 3aba_A Cytochrome P450; oxidor 25.5 44 0.0015 24.6 2.7 23 73-96 13-35 (403)
39 4fb2_A P450CIN; heme, monooxyg 24.9 40 0.0014 24.7 2.3 21 76-96 16-38 (398)
40 3abb_A CYP105D6, cytochrome P4 24.2 25 0.00086 26.0 1.1 24 72-96 17-40 (408)
41 3n0w_A ABC branched chain amin 23.3 1E+02 0.0035 22.0 4.3 62 34-95 212-278 (379)
42 3iz5_h 60S ribosomal protein L 23.2 7.5 0.00026 26.4 -1.8 52 28-79 32-103 (133)
43 2zkr_x 60S ribosomal protein L 22.2 44 0.0015 22.3 1.9 18 34-51 67-84 (125)
44 4a17_W RPL31, 60S ribosomal pr 21.5 47 0.0016 21.7 1.9 18 34-51 53-70 (111)
45 2xbk_A PIMD protein; epoxidati 21.3 51 0.0017 24.5 2.3 22 74-96 21-42 (404)
46 4hde_A SCO1/SENC family lipopr 21.3 94 0.0032 20.1 3.4 35 31-65 82-117 (170)
47 1neq_A DNA-binding protein NER 20.1 52 0.0018 19.1 1.7 15 30-44 9-23 (74)
No 1
>3nxu_A Cytochrome P450 3A4; alpha beta protein, cytochrome P450 fold, hemoprotein, monoo cytochrome P450 reductase, endoplasmic reticulum; HET: HEM RIT; 2.00A {Homo sapiens} SCOP: a.104.1.1 PDB: 1w0e_A* 1w0g_A* 2j0d_A* 2v0m_A* 1w0f_A* 1tqn_A* 3ua1_A* 3tjs_A*
Probab=96.22 E-value=0.0025 Score=48.49 Aligned_cols=42 Identities=10% Similarity=0.100 Sum_probs=33.1
Q ss_pred HHHHHcCCCCCCCccCCCCHHHHHHHHHHhhcCCCCCCCCccccccchHHHHHHHhcCcc
Q 034199 37 KFLRQQGLKGNSYRLLFGDLKENSIELKEAKARPLSLDDNIAIRVNPFLHKLVRILSCGL 96 (101)
Q Consensus 37 r~Lr~QGI~GPpy~fl~Gn~~E~~~~~~~a~s~p~~~sHDi~prV~P~~~~w~~~YG~~~ 96 (101)
...+++|+.||++-.++||+.++.+ ....++.+|.++||+++
T Consensus 9 ~~~k~~~~PGP~~~PliGn~~~~~~------------------~~~~~~~~~~~~yG~i~ 50 (485)
T 3nxu_A 9 GLFKKLGIPGPTPLPFLGNILSYHK------------------GFCMFDMECHKKYGKVW 50 (485)
T ss_dssp THHHHHTCCCCCCBTTTBTGGGGGG------------------CHHHHHHHHHHHHCSEE
T ss_pred hHHhhCCCCCCCCcCeecCcHHhhc------------------ChHHHHHHHHHHcCCeE
Confidence 4678999999999999999866521 12446789999999875
No 2
>3s79_A Cytochrome P450 19A1; oxidoreductase; HET: HEM ASD; 2.75A {Homo sapiens} PDB: 3eqm_A* 3s7s_A* 4gl5_A* 4gl7_A*
Probab=94.33 E-value=0.025 Score=43.06 Aligned_cols=43 Identities=14% Similarity=0.107 Sum_probs=30.4
Q ss_pred HHcCCCCCCCccCCCCHHHHHHHHHHhhcCCCCCCCCccccccchHHHHHHHhcCcc
Q 034199 40 RQQGLKGNSYRLLFGDLKENSIELKEAKARPLSLDDNIAIRVNPFLHKLVRILSCGL 96 (101)
Q Consensus 40 r~QGI~GPpy~fl~Gn~~E~~~~~~~a~s~p~~~sHDi~prV~P~~~~w~~~YG~~~ 96 (101)
++.++.||++-.++||+.++.+.... .....+.+|.++||+++
T Consensus 43 ~~~~pPGP~~~P~iGnl~~~~~~~~~--------------~~~~~~~~~~~~yG~v~ 85 (503)
T 3s79_A 43 GTSSIPGPGYCMGIGPLISHGRFLWM--------------GIGSACNYYNRVYGEFM 85 (503)
T ss_dssp --CCCCSCCCCSSSHHHHHHHHHHHH--------------CHHHHHHHHHHHSCSEE
T ss_pred ccCCCCCCCCCceeeehhcccccccc--------------chhHHHHHHHHHhCCeE
Confidence 35799999999999999887542211 11235788999999865
No 3
>3ld6_A Lanosterol 14-alpha demethylase; cytochrome P450, ketoconazole, S genomics, structural genomics consortium, SGC; HET: HEM KKK BCD; 2.80A {Homo sapiens} PDB: 3juv_A* 3jus_A*
Probab=89.53 E-value=0.26 Score=37.31 Aligned_cols=37 Identities=16% Similarity=0.194 Sum_probs=25.2
Q ss_pred cCCCCCCCc---c-CCCCHHHHHHHHHHhhcCCCCCCCCccccccchHHHHHHHhcCcc
Q 034199 42 QGLKGNSYR---L-LFGDLKENSIELKEAKARPLSLDDNIAIRVNPFLHKLVRILSCGL 96 (101)
Q Consensus 42 QGI~GPpy~---f-l~Gn~~E~~~~~~~a~s~p~~~sHDi~prV~P~~~~w~~~YG~~~ 96 (101)
.|.++||.- + ++||+.++.+ . -..++.+|.++||++|
T Consensus 8 ~g~~~PP~~~~~lP~iG~~~~~~~-------~-----------~~~~~~~~~~kYG~i~ 48 (461)
T 3ld6_A 8 AGVKSPPYIFSPIPFLGHAIAFGK-------S-----------PIEFLENAYEKYGPVF 48 (461)
T ss_dssp --CCCCCBCCCSSTTTBTHHHHHH-------C-----------HHHHHHHHHHHHCSEE
T ss_pred cCCCCCCCCCCCcCeeeeHHHhhh-------C-----------HHHHHHHHHHHhCCEE
Confidence 477777642 3 6799988754 0 1357899999999875
No 4
>3k9v_A 1,25-dihydroxyvitamin D(3) 24-hydroxylase, mitochondrial; mitochondrial cytochrome P450, monotopic membrane protein, monooxygenase; HET: HEM CPS; 2.50A {Rattus norvegicus} PDB: 3k9y_A*
Probab=88.20 E-value=0.47 Score=35.59 Aligned_cols=41 Identities=17% Similarity=0.032 Sum_probs=29.2
Q ss_pred CCCCCCCccCCCCHHHHHHHHHHhhcCCCCCCCCccccccchHHHHHHHhcCcc
Q 034199 43 GLKGNSYRLLFGDLKENSIELKEAKARPLSLDDNIAIRVNPFLHKLVRILSCGL 96 (101)
Q Consensus 43 GI~GPpy~fl~Gn~~E~~~~~~~a~s~p~~~sHDi~prV~P~~~~w~~~YG~~~ 96 (101)
.+.||++-.++||+.++.... -.....-++.+|.++||+++
T Consensus 25 ~~PGP~~~p~iG~~~~~~~~~-------------~~~~~~~~~~~l~~~YG~i~ 65 (482)
T 3k9v_A 25 DLPGPTNWPLLGSLLEIFWKG-------------GLKKQHDTLAEYHKKYGQIF 65 (482)
T ss_dssp GCCCSCCCTTTBTHHHHHHTT-------------CGGGHHHHHHHHHHHHCSEE
T ss_pred CCCCCCCCCccccHHHHhccC-------------CcccHHHHHHHHHHHcCCEE
Confidence 489999999999998875310 01122346889999999864
No 5
>2cd8_A Cytochrome P450 monooxygenase; oxidoreductase, PIKC, macrolide monooxygenase, antibiotic biosynthesis, heme, iron, metal-binding; HET: HEM PXI; 1.7A {Streptomyces venezuelae} PDB: 2c6h_A* 2bvj_A* 2ca0_A* 2c7x_A* 2vzm_A* 2vz7_A* 2vsj_A* 2wi9_A* 2whw_A*
Probab=86.45 E-value=0.17 Score=38.62 Aligned_cols=37 Identities=24% Similarity=0.204 Sum_probs=19.7
Q ss_pred HcCCCCCCCccCCCCHHH-HHHHHHHhhcCCCCCCCCccccccchHHHHHHHhcCcc
Q 034199 41 QQGLKGNSYRLLFGDLKE-NSIELKEAKARPLSLDDNIAIRVNPFLHKLVRILSCGL 96 (101)
Q Consensus 41 ~QGI~GPpy~fl~Gn~~E-~~~~~~~a~s~p~~~sHDi~prV~P~~~~w~~~YG~~~ 96 (101)
++|+.||++-+++||..+ +.+ .-.+++.+| ++||+++
T Consensus 25 ~~~~PGP~~~p~lG~~~~~~~~------------------~p~~~~~~l-~~yGpv~ 62 (436)
T 2cd8_A 25 QQGTTASPPVLDLGALGQDFAA------------------DPYPTYARL-RAEGPAH 62 (436)
T ss_dssp ---------CCBHHHHHHHHHH------------------CCHHHHHHH-HTTCSEE
T ss_pred ccCCCCCCccccCCCCCccccc------------------ChHHHHHHH-HHhCCee
Confidence 588999999999999863 211 114678888 9999875
No 6
>3e6i_A CYPIIE1, P450-J, cytochrome P450 2E1; CYP2E1, monooxygenase, acetaminophen, oxidoreductase, heme, endoplasmic reticulum, iron, membrane; HET: HEM; 2.20A {Homo sapiens} PDB: 3e4e_A* 3gph_A* 3koh_A* 3lc4_A* 3t3z_A*
Probab=83.00 E-value=0.58 Score=35.10 Aligned_cols=36 Identities=11% Similarity=0.058 Sum_probs=26.7
Q ss_pred CCCCCCccCCCCHHHHHHHHHHhhcCCCCCCCCccccccchHHHHHHHhcCcc
Q 034199 44 LKGNSYRLLFGDLKENSIELKEAKARPLSLDDNIAIRVNPFLHKLVRILSCGL 96 (101)
Q Consensus 44 I~GPpy~fl~Gn~~E~~~~~~~a~s~p~~~sHDi~prV~P~~~~w~~~YG~~~ 96 (101)
..||++-.++||+.++. .....-++.+|.++||+++
T Consensus 12 pPgP~~~PliG~~~~~~-----------------~~~~~~~~~~~~~~yG~v~ 47 (476)
T 3e6i_A 12 PPGPFPLPIIGNLFQLE-----------------LKNIPKSFTRLAQRFGPVF 47 (476)
T ss_dssp CCCCCCBTTTBTGGGCC-----------------TTCHHHHHHHHHHHHCSEE
T ss_pred CcCCCCcccccChhhhc-----------------cccHhHHHHHHHHHhCCEE
Confidence 68999989999986541 0122457899999999975
No 7
>3swz_A Steroid 17-alpha-hydroxylase/17,20 lyase; cytochrome P450, CYP17A1, P450C17, P450 17A1, monooxyg 17A-hydroxylase, heme protein; HET: HEM TOK; 2.40A {Homo sapiens} PDB: 3ruk_A*
Probab=82.87 E-value=0.2 Score=38.08 Aligned_cols=40 Identities=18% Similarity=-0.026 Sum_probs=21.6
Q ss_pred HcCCCC---CCCccCCCCHHHHHHHHHHhhcCCCCCCCCccccccchHHHHHHHhcCcc
Q 034199 41 QQGLKG---NSYRLLFGDLKENSIELKEAKARPLSLDDNIAIRVNPFLHKLVRILSCGL 96 (101)
Q Consensus 41 ~QGI~G---Ppy~fl~Gn~~E~~~~~~~a~s~p~~~sHDi~prV~P~~~~w~~~YG~~~ 96 (101)
+.|++. |++-.++||+.++.+ + ....-.+.+|.++||+++
T Consensus 4 ~~~~~~PPgP~~lPliGnl~~l~~-------------~---~~~~~~~~~~~~kYG~i~ 46 (494)
T 3swz_A 4 KTGAKYPKSLLSLPLVGSLPFLPR-------------H---GHMHNNFFKLQKKYGPIY 46 (494)
T ss_dssp --------CCBCCCEEEEESSCTT-------------S---SCHHHHHHHTHHHHCSEE
T ss_pred CCCCCCCCCCCCCCeEcchHHhCC-------------C---CchhHHHHHHHHHcCCEE
Confidence 455544 444678899854311 0 012346889999999975
No 8
>2hi4_A Cytochrome P450 1A2; CYP1A2, monooxygenase, drug metabolizing enzyme, alpha-naphthoflavone, benzo(H)flavone, 7,8- benzoflavone, oxidoreductase; HET: HEM BHF; 1.95A {Homo sapiens}
Probab=82.35 E-value=0.71 Score=35.25 Aligned_cols=36 Identities=14% Similarity=-0.031 Sum_probs=26.9
Q ss_pred CCCCCCCccCCCCHHHHHHHHHHhhcCCCCCCCCccccccchHHHHHHHhcCcc
Q 034199 43 GLKGNSYRLLFGDLKENSIELKEAKARPLSLDDNIAIRVNPFLHKLVRILSCGL 96 (101)
Q Consensus 43 GI~GPpy~fl~Gn~~E~~~~~~~a~s~p~~~sHDi~prV~P~~~~w~~~YG~~~ 96 (101)
++.||++-.++||+.++.+ | ...++.+|.++||+++
T Consensus 17 ~~PgP~~~p~~G~~~~~~~--------------~----~~~~~~~l~~~yG~v~ 52 (495)
T 2hi4_A 17 SPPEPWGWPLLGHVLTLGK--------------N----PHLALSRMSQRYGDVL 52 (495)
T ss_dssp CCCCCCCBTTTBTHHHHTT--------------C----HHHHHHHHHHHHCSEE
T ss_pred CCCCCCCCcceeeHHhcCc--------------c----HHHHHHHHHHHhCCEE
Confidence 3589988888999976521 1 1356889999999976
No 9
>3b98_A Prostaglandin I2 synthase; prostacyclin synthase, cytochrome P450 8A1, CYP8A1, isomerase; HET: HEM; 2.08A {Danio rerio} PDB: 3b99_A*
Probab=79.73 E-value=0.98 Score=33.90 Aligned_cols=36 Identities=11% Similarity=-0.032 Sum_probs=26.8
Q ss_pred CCCCCCC-ccCCCCHHHHHHHHHHhhcCCCCCCCCccccccchHHHHHHHhcCcc
Q 034199 43 GLKGNSY-RLLFGDLKENSIELKEAKARPLSLDDNIAIRVNPFLHKLVRILSCGL 96 (101)
Q Consensus 43 GI~GPpy-~fl~Gn~~E~~~~~~~a~s~p~~~sHDi~prV~P~~~~w~~~YG~~~ 96 (101)
-..||++ -.++||+.++.+ | -.+++.+|.++||+++
T Consensus 19 ~pPgp~~~~P~iG~~~~~~~--------------~----~~~~~~~l~~~yG~v~ 55 (475)
T 3b98_A 19 EPPLDKGMIPWLGHALEFGK--------------D----AAKFLTRMKEKHGDIF 55 (475)
T ss_dssp CCCEECCSSTTTBTHHHHHH--------------C----HHHHHHHHHHHHCSEE
T ss_pred CCCCCCCCcchHHhHHHHhh--------------C----HHHHHHHHHHHhCCeE
Confidence 3578887 567899987742 1 1468999999999875
No 10
>1po5_A Cytochrome P450 2B4; oxidoreductase, membrane protein, CYP 2B4, CYP LM2, cytochro monooxygenase; HET: HEM; 1.60A {Oryctolagus cuniculus} SCOP: a.104.1.1 PDB: 3mvr_A* 2bdm_A* 3g5n_A* 3g93_A* 3kw4_A* 3me6_A* 1suo_A* 3r1a_A* 3r1b_A* 2q6n_A* 3tk3_A* 3ibd_A* 3qoa_A* 3qu8_A*
Probab=77.69 E-value=1.1 Score=33.99 Aligned_cols=38 Identities=13% Similarity=0.023 Sum_probs=27.5
Q ss_pred cCCCCCCCccCCCCHHHHHHHHHHhhcCCCCCCCCccccccchHHHHHHHhcCcc
Q 034199 42 QGLKGNSYRLLFGDLKENSIELKEAKARPLSLDDNIAIRVNPFLHKLVRILSCGL 96 (101)
Q Consensus 42 QGI~GPpy~fl~Gn~~E~~~~~~~a~s~p~~~sHDi~prV~P~~~~w~~~YG~~~ 96 (101)
..+.||++-.++||+.++. .. ....++.+|.++||+++
T Consensus 10 ~~pPgP~~~p~iG~~~~~~-------------~~----~~~~~~~~l~~~yG~v~ 47 (476)
T 1po5_A 10 KLPPGPSPLPVLGNLLQMD-------------RK----GLLRSFLRLREKYGDVF 47 (476)
T ss_dssp CCCCCSCCBTTTBTGGGCC-------------TT----CHHHHHHHHHHHHCSEE
T ss_pred CCCcCCCCCCccccHHhcc-------------CC----cHHHHHHHHHHHhCCEE
Confidence 3568998888999986541 01 12567899999999875
No 11
>3i3k_A Lanosterol 14-alpha demethylase; cytochrome P450, hemeprotein, alternative splicing, cholesterol biosynthesis, endoplasmic reticulum, heme, iron; HET: HEM KLN BCD; 2.80A {Homo sapiens} PDB: 3jus_A* 3juv_A* 3ld6_A*
Probab=77.57 E-value=1.7 Score=32.64 Aligned_cols=41 Identities=12% Similarity=-0.011 Sum_probs=23.8
Q ss_pred HHHHcCCCCCC----CccCCCCHHHHHHHHHHhhcCCCCCCCCccccccchHHHHHHHhcCcc
Q 034199 38 FLRQQGLKGNS----YRLLFGDLKENSIELKEAKARPLSLDDNIAIRVNPFLHKLVRILSCGL 96 (101)
Q Consensus 38 ~Lr~QGI~GPp----y~fl~Gn~~E~~~~~~~a~s~p~~~sHDi~prV~P~~~~w~~~YG~~~ 96 (101)
.-..+|-+-|| .-.++||+.++.+ .-..++.+|.++||+++
T Consensus 4 ~~~~~~~~~PPg~P~~lP~iG~l~~~~~------------------~~~~~~~~~~~~yG~v~ 48 (461)
T 3i3k_A 4 KTLPAGVKSPPYIFSPIPFLGHAIAFGK------------------SPIEFLENAYEKYGPVF 48 (461)
T ss_dssp ------CCCCCBCCCSSTTTBTHHHHHH------------------CHHHHHHHHHHHHCSEE
T ss_pred ccCCCCCCCCCCCCCCCCccccHHhhcc------------------CHHHHHHHHHHHhCCEE
Confidence 33345554444 3356899988743 01357899999999865
No 12
>1r9o_A Cytochrome P450 2C9; monooxygenase, drug metabolizing enzyme, oxidoreductas; HET: HEM FLP; 2.00A {Homo sapiens} SCOP: a.104.1.1 PDB: 1og5_A* 1og2_A* 2nnj_A* 1pq2_A* 2nni_A* 2nnh_A* 2vn0_A* 1nr6_A* 1dt6_A* 1n6b_A*
Probab=77.53 E-value=1.2 Score=33.71 Aligned_cols=38 Identities=13% Similarity=0.150 Sum_probs=22.7
Q ss_pred cCCCCCCCccCCCCHHHHHHHHHHhhcCCCCCCCCccccccchHHHHHHHhcCcc
Q 034199 42 QGLKGNSYRLLFGDLKENSIELKEAKARPLSLDDNIAIRVNPFLHKLVRILSCGL 96 (101)
Q Consensus 42 QGI~GPpy~fl~Gn~~E~~~~~~~a~s~p~~~sHDi~prV~P~~~~w~~~YG~~~ 96 (101)
..+.||++-.++||+.++.. ....+++.+|.++||+++
T Consensus 11 ~~pPgP~~~p~iG~~~~~~~-----------------~~~~~~~~~l~~~yG~v~ 48 (477)
T 1r9o_A 11 KLPPGPTPLPVIGNILQIGI-----------------KDISKSLTNLSKVYGPVF 48 (477)
T ss_dssp BCCCCSSSCC-----CCBCH-----------------HHHHHHHHHHHHHHCSEE
T ss_pred CCCCCCCCCceeccHhhcCC-----------------CChHHHHHHHHHHhCCEE
Confidence 36789988888999865410 112567889999999865
No 13
>2ij2_A Cytochrome P450 BM3; monoxygenase, heme binding protein, atomic resolution, oxidoreductase; HET: HEM; 1.20A {Bacillus megaterium} SCOP: a.104.1.1 PDB: 2hpd_A* 1fag_A* 1jpz_A* 1zo9_A* 1zo4_A* 1zoa_A* 3m4v_A* 3ekb_A* 3ben_A* 1fah_A* 2nnb_A* 3kx3_A* 3ekd_A* 3ekf_A* 1smi_A* 1smj_A* 3kx4_A* 2ij3_A* 2ij4_A* 3hf2_A* ...
Probab=77.36 E-value=1.2 Score=33.83 Aligned_cols=38 Identities=13% Similarity=-0.038 Sum_probs=27.0
Q ss_pred cCCCCCCCccCCCCHHHHHHHHHHhhcCCCCCCCCccccccchHHHHHHHhcCcc
Q 034199 42 QGLKGNSYRLLFGDLKENSIELKEAKARPLSLDDNIAIRVNPFLHKLVRILSCGL 96 (101)
Q Consensus 42 QGI~GPpy~fl~Gn~~E~~~~~~~a~s~p~~~sHDi~prV~P~~~~w~~~YG~~~ 96 (101)
.++.||++-.++||+.++.. . .-...+.+|.++||+++
T Consensus 3 ~~~PGP~~~p~iG~l~~~~~-------------~----~~~~~~~~~~~~yG~v~ 40 (470)
T 2ij2_A 3 KEMPQPKTFGELKNLPLLNT-------------D----KPVQALMKIADELGEIF 40 (470)
T ss_dssp CCCCCCCCCGGGTTGGGGCS-------------S----CHHHHHHHHHHHHCSEE
T ss_pred CCCCCCCCCCccccHHHHhc-------------c----cchHHHHHHHHHhCCeE
Confidence 36789988888999865410 1 11346889999999875
No 14
>3pm0_A Cypib1, cytochrome P450 1B1; CYP1B1, monooxygenase, alpha-naphthoflavone, 17BETA-estradiol, oxidoreductase; HET: HEM BHF; 2.70A {Homo sapiens}
Probab=76.85 E-value=0.83 Score=34.52 Aligned_cols=37 Identities=14% Similarity=0.021 Sum_probs=12.7
Q ss_pred cCCCCCCCccCCCCHHHHHHHHHHhhcCCCCCCCCccccccchHHHHHHHhcCcc
Q 034199 42 QGLKGNSYRLLFGDLKENSIELKEAKARPLSLDDNIAIRVNPFLHKLVRILSCGL 96 (101)
Q Consensus 42 QGI~GPpy~fl~Gn~~E~~~~~~~a~s~p~~~sHDi~prV~P~~~~w~~~YG~~~ 96 (101)
.-+.||++-.++||+.++.+ .-..++.+|.++||+++
T Consensus 9 ~~pPgP~~~P~iG~~~~~~~------------------~~~~~~~~~~~~yG~i~ 45 (507)
T 3pm0_A 9 GKPPGPFAWPLIGNAAAVGQ------------------AAHLSFARLARRYGDVF 45 (507)
T ss_dssp -------------------C------------------CHHHHHHHHHHHHCSEE
T ss_pred CCCcCCCCCCeeCchhhcCc------------------cHHHHHHHHHHHhCCEE
Confidence 34689998889999876521 11346899999999875
No 15
>3b6h_A Prostacyclin synthase; enzyme-inhibitor complex, CYP8A1, cytochrome P450, endoplasmic reticulum, fatty acid biosynthesis, heme, iron, isomerase; HET: BOG MXD HEM; 1.62A {Homo sapiens} PDB: 2iag_A*
Probab=76.82 E-value=1.3 Score=33.51 Aligned_cols=36 Identities=8% Similarity=-0.104 Sum_probs=26.1
Q ss_pred CCCCCCC-ccCCCCHHHHHHHHHHhhcCCCCCCCCccccccchHHHHHHHhcCcc
Q 034199 43 GLKGNSY-RLLFGDLKENSIELKEAKARPLSLDDNIAIRVNPFLHKLVRILSCGL 96 (101)
Q Consensus 43 GI~GPpy-~fl~Gn~~E~~~~~~~a~s~p~~~sHDi~prV~P~~~~w~~~YG~~~ 96 (101)
-..||++ -.++||+.++.+ .-..++.+|.++||++|
T Consensus 19 ~PPgp~~~~P~iG~~~~~~~------------------~~~~~~~~l~~kYG~i~ 55 (498)
T 3b6h_A 19 EPPLDLGSIPWLGYALDFGK------------------DAASFLTRMKEKHGDIF 55 (498)
T ss_dssp CCCEECCSSTTTBTHHHHHH------------------CHHHHHHHHHHHHCSEE
T ss_pred CCCCCCCCCcchhhHHHhcc------------------CHHHHHHHHHHHcCCeE
Confidence 3578877 467899987742 01347899999999874
No 16
>3tbg_A Cytochrome P450 2D6; monooxygenase, thioridazine, oxidoreductase; HET: RTZ HEM; 2.10A {Homo sapiens} PDB: 3qm4_A* 2f9q_A*
Probab=76.71 E-value=1.2 Score=33.35 Aligned_cols=41 Identities=20% Similarity=0.166 Sum_probs=24.0
Q ss_pred HHHcC-C-CCCCCccCCCCHHHHHHHHHHhhcCCCCCCCCccccccchHHHHHHHhcCcc
Q 034199 39 LRQQG-L-KGNSYRLLFGDLKENSIELKEAKARPLSLDDNIAIRVNPFLHKLVRILSCGL 96 (101)
Q Consensus 39 Lr~QG-I-~GPpy~fl~Gn~~E~~~~~~~a~s~p~~~sHDi~prV~P~~~~w~~~YG~~~ 96 (101)
=++.| + -||++-.++||+.++.. .+ ..-.+.+|.++||++|
T Consensus 5 ~ss~~kLPPGP~~lP~iGn~~~~~~-------------~~----~~~~~~~~~~kYG~i~ 47 (479)
T 3tbg_A 5 TSSKGKLPPGPLPLPGLGNLLHVDF-------------QN----TPYCFDQLRRRFGDVF 47 (479)
T ss_dssp ----CCCCCCSCCBTTTBTGGGCCT-------------TS----HHHHHHHHHHHHCSEE
T ss_pred CCCCCCCCCCCCCcCcccchHhhcC-------------CC----HHHHHHHHHHHhCCEE
Confidence 34455 3 27777778899855411 11 1124789999999875
No 17
>3gw9_A Sterol 14alpha-demethylase; CYP51, cytochrome P450, heme, oxidoreductase, monooxygenase, sterol biosynthesis, lipids, endoplasmic reticulum; HET: HEM VNI; 1.87A {Trypanosoma brucei} PDB: 3tik_A* 3g1q_A* 3p99_A* 2wv2_A* 2x2n_A* 3khm_A* 3k1o_A* 3ksw_A* 2wx2_A* 2wuz_A* 3l4d_A*
Probab=74.21 E-value=2.3 Score=31.44 Aligned_cols=34 Identities=12% Similarity=0.041 Sum_probs=23.7
Q ss_pred CCCCC-ccCCCCHHHHHHHHHHhhcCCCCCCCCccccccchHHHHHHHhc-Ccc
Q 034199 45 KGNSY-RLLFGDLKENSIELKEAKARPLSLDDNIAIRVNPFLHKLVRILS-CGL 96 (101)
Q Consensus 45 ~GPpy-~fl~Gn~~E~~~~~~~a~s~p~~~sHDi~prV~P~~~~w~~~YG-~~~ 96 (101)
.|||+ -.++||+.++.+ .-..++.+|.++|| +++
T Consensus 6 Pg~p~~~P~iG~~~~~~~------------------~~~~~~~~~~~~yG~~i~ 41 (450)
T 3gw9_A 6 PVYPVTVPILGHIIQFGK------------------SPLGFMQECKRQLKSGIF 41 (450)
T ss_dssp CBCCCCSTTTBTHHHHHH------------------CHHHHHHHHHHHHTCSEE
T ss_pred CCCCCCcchhccHHHHcc------------------CHHHHHHHHHHHhCCCeE
Confidence 57666 456899988743 01346799999999 654
No 18
>3czh_A Cytochrome P450 2R1; vitamin D, vitamin S 25-hydroxylase, drug metabolism, structural genomics, structural genomics consortium, SGC; HET: BCD HEM D2V; 2.30A {Homo sapiens} SCOP: a.104.1.1 PDB: 2ojd_A* 3c6g_A* 3dl9_A*
Probab=71.73 E-value=2.4 Score=32.23 Aligned_cols=38 Identities=8% Similarity=0.094 Sum_probs=28.0
Q ss_pred CCCCCCccCCCCHHHHHHHHHHhhcCCCCCCCCccccccchHHHHHHHhcCcc
Q 034199 44 LKGNSYRLLFGDLKENSIELKEAKARPLSLDDNIAIRVNPFLHKLVRILSCGL 96 (101)
Q Consensus 44 I~GPpy~fl~Gn~~E~~~~~~~a~s~p~~~sHDi~prV~P~~~~w~~~YG~~~ 96 (101)
+.||++-.++||+.++.. .+ + ...+++.+|.++||+++
T Consensus 14 pPgP~~~p~~G~~~~~~~------~~------~---~~~~~~~~l~~~yG~v~ 51 (481)
T 3czh_A 14 PPGPPGLPFIGNIYSLAA------SS------E---LPHVYMRKQSQVYGEIF 51 (481)
T ss_dssp CCCCCCBTTTBHHHHHHH------CS------S---CHHHHHHHHHHHHCSEE
T ss_pred CCCCCCCcccccHhhcCc------cc------C---cHHHHHHHHHHHhCCEE
Confidence 589988888999987643 00 0 12568899999999876
No 19
>2fdv_A Cytochrome P450 2A6; CYP2A6, monooxygenase, drug metabolizing enzyme, coumarin 7-hydroxylase, nicotine oxidase, oxidoreductase; HET: HEM D2G; 1.65A {Homo sapiens} PDB: 1z11_A* 1z10_A* 2fdu_A* 2fdw_A* 2fdy_A* 3t3r_A* 2pg5_A* 2pg7_A* 2pg6_A* 3t3q_A* 3ebs_A* 2p85_A* 3t3s_A*
Probab=71.46 E-value=2 Score=32.44 Aligned_cols=36 Identities=11% Similarity=0.073 Sum_probs=26.2
Q ss_pred CCCCCCccCCCCHHHHHHHHHHhhcCCCCCCCCccccccchHHHHHHHhcCcc
Q 034199 44 LKGNSYRLLFGDLKENSIELKEAKARPLSLDDNIAIRVNPFLHKLVRILSCGL 96 (101)
Q Consensus 44 I~GPpy~fl~Gn~~E~~~~~~~a~s~p~~~sHDi~prV~P~~~~w~~~YG~~~ 96 (101)
+.||++-.++||+.++. ..| ..+++.+|.++||+++
T Consensus 12 pPgP~~~p~iG~~~~~~-------------~~~----~~~~~~~l~~~yG~v~ 47 (476)
T 2fdv_A 12 PPGPTPLPFIGNYLQLN-------------TEQ----MYNSLMKISERYGPVF 47 (476)
T ss_dssp CCCCCCBTTTBTGGGCC-------------TTB----HHHHHHHHHHHHCSEE
T ss_pred CCCCCCCcccccHhhcC-------------Ccc----hHHHHHHHHHHhCCEE
Confidence 58988888899986541 011 2467899999999875
No 20
>2cib_A Cytochrome P450 51; heme, heme lipid synthesis, metal-binding, monooxygenase, NADP, oxidoreductase, protein-inhibitor complex; HET: HEM CM6; 1.50A {Mycobacterium tuberculosis} SCOP: a.104.1.1 PDB: 2bz9_A* 1x8v_A* 2ci0_A* 2vku_A* 2w09_A* 2w0b_A* 2w0a_A* 1h5z_A* 1ea1_A* 1e9x_A* 1u13_A*
Probab=69.67 E-value=2.5 Score=31.84 Aligned_cols=36 Identities=14% Similarity=0.010 Sum_probs=25.1
Q ss_pred CCCC-CCCccCCCCHHHHHHHHHHhhcCCCCCCCCccccccchHHHHHHHhcCcc
Q 034199 43 GLKG-NSYRLLFGDLKENSIELKEAKARPLSLDDNIAIRVNPFLHKLVRILSCGL 96 (101)
Q Consensus 43 GI~G-Ppy~fl~Gn~~E~~~~~~~a~s~p~~~sHDi~prV~P~~~~w~~~YG~~~ 96 (101)
...| |++-.++||+.++.+ | -.+++.+|.++||+++
T Consensus 5 ~PPg~p~~~P~iG~~~~~~~--------------~----~~~~~~~l~~~yG~v~ 41 (455)
T 2cib_A 5 ALPRVSGGHDEHGHLEEFRT--------------D----PIGLMQRVRDELGDVG 41 (455)
T ss_dssp CCCBCSCCCBTTBTHHHHTT--------------C----HHHHHHHHHHHHCSEE
T ss_pred CCCCCCCCCCCccCHHHHhh--------------C----hHHHHHHHHHHcCCEE
Confidence 3455 555678899977621 1 1467899999999876
No 21
>3v8d_A Cholesterol 7-alpha-monooxygenase; cytochrome, oxidoreductase; HET: HEM 0GV; 1.90A {Homo sapiens} PDB: 3sn5_A* 3dax_A*
Probab=68.24 E-value=1.2 Score=33.78 Aligned_cols=35 Identities=11% Similarity=-0.126 Sum_probs=25.2
Q ss_pred CCCCCCc-cCCCCHHHHHHHHHHhhcCCCCCCCCccccccchHHHHHHHhcCcc
Q 034199 44 LKGNSYR-LLFGDLKENSIELKEAKARPLSLDDNIAIRVNPFLHKLVRILSCGL 96 (101)
Q Consensus 44 I~GPpy~-fl~Gn~~E~~~~~~~a~s~p~~~sHDi~prV~P~~~~w~~~YG~~~ 96 (101)
--||++. .++||+.++. ..-.+++.+|.++||+++
T Consensus 15 PPgp~~~lPliG~~~~~~------------------~~p~~~~~~l~~~yGpv~ 50 (491)
T 3v8d_A 15 PPLENGLIPYLGCALQFG------------------ANPLEFLRANQRKHGHVF 50 (491)
T ss_dssp CCEEEEEESSTTTTGGGT------------------CCHHHHHHHHHHHHCSEE
T ss_pred CCCCCCCcceeccHHHHh------------------cCHHHHHHHHHHHcCCce
Confidence 4667774 6789986552 233678999999999865
No 22
>2ve3_A Putative cytochrome P450 120; oxidoreductase, monooxygenase, metal-binding, heme, iron; HET: HEM REA; 2.10A {Synechocystis SP} PDB: 2ve4_A*
Probab=64.32 E-value=6.7 Score=29.35 Aligned_cols=35 Identities=11% Similarity=-0.100 Sum_probs=26.5
Q ss_pred CCCCCCCccCCCCHHHHHHHHHHhhcCCCCCCCCccccccchHHHHHHHhcCcc
Q 034199 43 GLKGNSYRLLFGDLKENSIELKEAKARPLSLDDNIAIRVNPFLHKLVRILSCGL 96 (101)
Q Consensus 43 GI~GPpy~fl~Gn~~E~~~~~~~a~s~p~~~sHDi~prV~P~~~~w~~~YG~~~ 96 (101)
-+.||++-.++||+.++.+ | | . ++.+|.++||+++
T Consensus 13 ~pPgp~~~P~iG~~~~~~~--------------~--~--~-~~~~~~~~yg~v~ 47 (444)
T 2ve3_A 13 IPPGDFGLPWLGETLNFLN--------------D--G--D-FGKKRQQQFGPIF 47 (444)
T ss_dssp CCCCCCCBTTTBTHHHHHH--------------C--T--T-HHHHHHHHHCSSE
T ss_pred CCCCCCCCCccccHHHHhc--------------C--c--H-HHHHHHHHcCCeE
Confidence 4688888889999987642 1 2 2 6779999999865
No 23
>3dan_A Cytochrome P450 74A2; AOS heme cytochrome P450 structure, fatty acid biosynthesis, heme, iron, lipid synthesis, lyase, metal-binding; HET: HEM; 1.80A {Parthenium argentatum} PDB: 3dam_A* 3dbm_A*
Probab=61.47 E-value=2.3 Score=31.77 Aligned_cols=41 Identities=7% Similarity=0.093 Sum_probs=27.8
Q ss_pred CCCCCCCccCCCCHHHHHHHHHHhhcCCCCCCCCccc-cccchHHHHHHHhcC-cc
Q 034199 43 GLKGNSYRLLFGDLKENSIELKEAKARPLSLDDNIAI-RVNPFLHKLVRILSC-GL 96 (101)
Q Consensus 43 GI~GPpy~fl~Gn~~E~~~~~~~a~s~p~~~sHDi~p-rV~P~~~~w~~~YG~-~~ 96 (101)
.|.||..-.++||+.++.+-.- .. .-.+++.+|.++||+ +|
T Consensus 10 ~iPGp~g~P~iG~~~~~~~~~~-------------~~g~~~~~~~~~~~kyG~~vf 52 (473)
T 3dan_A 10 EIPGSYGIPFFQPIKDRLEYFY-------------GTGGRDEYFRSRMQKYQSTVF 52 (473)
T ss_dssp CCCCCCCSTTHHHHHHHHHHHH-------------STTHHHHHHHHHHHHHTCSEE
T ss_pred CCCCCCCCcchhhHHHHHHHHH-------------hhcCchHHHHhHHHHhCCeEE
Confidence 4677776678899887653110 11 225789999999999 44
No 24
>3dax_A Cytochrome P450 7A1; cholesterol, cholesterol 7-alpha hydroxylase, structural genomics, structural genomics consortium, SGC, cholesterol metabolism; HET: HEM; 2.15A {Homo sapiens} PDB: 3sn5_A*
Probab=58.55 E-value=2.3 Score=31.97 Aligned_cols=14 Identities=21% Similarity=0.114 Sum_probs=11.8
Q ss_pred chHHHHHHHhcCcc
Q 034199 83 PFLHKLVRILSCGL 96 (101)
Q Consensus 83 P~~~~w~~~YG~~~ 96 (101)
.++.+|.++||++|
T Consensus 37 ~~~~~~~~kyG~i~ 50 (491)
T 3dax_A 37 EFLRANQRKHGHVF 50 (491)
T ss_dssp HHHHHHHHHHCSEE
T ss_pred HHHHHHHHhcCCeE
Confidence 47889999999864
No 25
>3qz1_A Steroid 21-hydroxylase; P450 monooxygenase, oxidoreductase; HET: HEM 3QZ; 3.00A {Bos taurus}
Probab=53.74 E-value=3.8 Score=30.79 Aligned_cols=16 Identities=19% Similarity=0.040 Sum_probs=11.7
Q ss_pred ccchHHHHHHHhcCcc
Q 034199 81 VNPFLHKLVRILSCGL 96 (101)
Q Consensus 81 V~P~~~~w~~~YG~~~ 96 (101)
...++.+|.++||+++
T Consensus 45 ~~~~~~~l~~~yG~v~ 60 (496)
T 3qz1_A 45 LPIHLLSLTQKLGPVY 60 (496)
T ss_dssp HHHHHHHGGGTSCSEE
T ss_pred chHHHHHHHHHhCCEE
Confidence 3456788888888765
No 26
>1izo_A P450bsbeta, cytochrome P450 152A1; heme protein, protein-fatty acid complex, riken structural genomics/proteomics initiative, RSGI; HET: HEM PAM; 2.10A {Bacillus subtilis} SCOP: a.104.1.1 PDB: 2zqj_A* 2zqx_A*
Probab=53.19 E-value=9.7 Score=28.20 Aligned_cols=31 Identities=10% Similarity=-0.013 Sum_probs=21.9
Q ss_pred ccCCCCHHHHHHHHHHhhcCCCCCCCCccccccchHHHHHHHhcCcccc
Q 034199 50 RLLFGDLKENSIELKEAKARPLSLDDNIAIRVNPFLHKLVRILSCGLVR 98 (101)
Q Consensus 50 ~fl~Gn~~E~~~~~~~a~s~p~~~sHDi~prV~P~~~~w~~~YG~~~~~ 98 (101)
-.++||..++.+ . -.+++++|.++||...+|
T Consensus 8 ~P~lG~~~~~~~---~---------------p~~~~~~l~~~yg~pv~~ 38 (417)
T 1izo_A 8 DKSLDNSLTLLK---E---------------GYLFIKNRTERYNSDLFQ 38 (417)
T ss_dssp CCCTTHHHHHHH---H---------------GGGHHHHHHHHTTSSEEE
T ss_pred CCccchHHHHhh---C---------------cHHHHHHHHHHhCCCeEE
Confidence 367999988753 1 157899999999943333
No 27
>3awm_A Fatty acid alpha-hydroxylase; cytochrome P450, peroxygenase, oxidoreductase; HET: HEM PLM; 1.65A {Sphingomonas paucimobilis} PDB: 3awq_A* 3awp_A*
Probab=49.66 E-value=13 Score=27.42 Aligned_cols=28 Identities=7% Similarity=-0.032 Sum_probs=20.2
Q ss_pred cCCCCHHHHHHHHHHhhcCCCCCCCCccccccchHHHHHHHh-cCcc
Q 034199 51 LLFGDLKENSIELKEAKARPLSLDDNIAIRVNPFLHKLVRIL-SCGL 96 (101)
Q Consensus 51 fl~Gn~~E~~~~~~~a~s~p~~~sHDi~prV~P~~~~w~~~Y-G~~~ 96 (101)
.++||..++.+ | -.+++.++.++| |+++
T Consensus 8 P~iG~~~~~~~--------------~----p~~~~~~l~~~y~gpv~ 36 (415)
T 3awm_A 8 KGPDETLSLLA--------------D----PYRFISRQCQRLGANAF 36 (415)
T ss_dssp -CCCCHHHHHH--------------S----TTTHHHHHHHHHTSSEE
T ss_pred CccchHHHHHh--------------C----hHHHHHHHHHHhCCCeE
Confidence 57999988743 1 157899999999 5654
No 28
>3dsk_A Cytochrome P450 74A, chloroplast; P450 fold, fatty acid biosynthesis, heme, iron, synthesis, lyase, metal-binding, oxylipin biosynthesis; HET: HEM T25; 1.55A {Arabidopsis thaliana} PDB: 2rcm_A* 3dsj_A* 3dsi_A* 2rcl_A* 2rch_A* 3cli_A*
Probab=47.18 E-value=6 Score=29.79 Aligned_cols=41 Identities=15% Similarity=0.154 Sum_probs=27.1
Q ss_pred CCCCCCCccCCCCHHHHHHHHHHhhcCCCCCCCCccccccchHHHHHHHhcC-cc
Q 034199 43 GLKGNSYRLLFGDLKENSIELKEAKARPLSLDDNIAIRVNPFLHKLVRILSC-GL 96 (101)
Q Consensus 43 GI~GPpy~fl~Gn~~E~~~~~~~a~s~p~~~sHDi~prV~P~~~~w~~~YG~-~~ 96 (101)
-+-||+.-.++||+.++.+-.. + ..-..++.++.++||+ +|
T Consensus 29 ~pPGp~g~P~iG~~~~~~~~~~---~----------~~~~~f~~~~~~kyG~~Vf 70 (495)
T 3dsk_A 29 NIPGNYGLPIVGPIKDRWDYFY---D----------QGAEEFFKSRIRKYNSTVY 70 (495)
T ss_dssp CCCCCCCSTTHHHHHHHHHHHT---T----------SCHHHHHHHHHHHHTCSEE
T ss_pred CCCCCCCCCccchHHHHHHHHH---h----------cCcHHHHHHHHHHhCCceE
Confidence 4566666577899877754211 1 1225689999999999 54
No 29
>3dbg_A Putative cytochrome P450; cytochrome P450 oxidoreductase, CYP170A1, molecular mechanism, heme, iron, metal-binding, monooxygenase; HET: HEM; 2.60A {Streptomyces coelicolor A3} PDB: 3el3_A*
Probab=40.14 E-value=7.9 Score=29.03 Aligned_cols=34 Identities=12% Similarity=-0.076 Sum_probs=23.6
Q ss_pred CCCCCCccCCCCHHHHHHHHHHhhcCCCCCCCCccccccchHHHHHHHhcCcc
Q 034199 44 LKGNSYRLLFGDLKENSIELKEAKARPLSLDDNIAIRVNPFLHKLVRILSCGL 96 (101)
Q Consensus 44 I~GPpy~fl~Gn~~E~~~~~~~a~s~p~~~sHDi~prV~P~~~~w~~~YG~~~ 96 (101)
..||++-.++||+.++.+ .-.+++.+|.+ ||+++
T Consensus 25 pPgP~~~P~iG~~~~~~~------------------~p~~~~~~l~~-yGpv~ 58 (467)
T 3dbg_A 25 PVAGGGVPLLGHGWRLAR------------------DPLAFMSQLRD-HGDVV 58 (467)
T ss_dssp CEECCCCSTTHHHHHHHH------------------CHHHHHHHHGG-GCSEE
T ss_pred CCCCCCCCcccchHHhcc------------------CHHHHHHHHHH-hCCEE
Confidence 456666778999988753 01457777777 99865
No 30
>3hpd_A Hydroxyethylthiazole kinase; alpha-beta, ATP binding, transferase, ATP-binding, M metal-binding, nucleotide-binding, thiamine biosynthesis; 1.85A {Pyrococcus horikoshii}
Probab=34.47 E-value=26 Score=25.81 Aligned_cols=49 Identities=18% Similarity=0.131 Sum_probs=27.6
Q ss_pred CccCCCCHHHHHHHHHHh-hcCCCCCCCCccccccchHHHHHHHhcCccc
Q 034199 49 YRLLFGDLKENSIELKEA-KARPLSLDDNIAIRVNPFLHKLVRILSCGLV 97 (101)
Q Consensus 49 y~fl~Gn~~E~~~~~~~a-~s~p~~~sHDi~prV~P~~~~w~~~YG~~~~ 97 (101)
++.+-||..||..+.... ..+..+-+.+...-....-.+..++||.+.+
T Consensus 114 ~~vIrgN~sEi~~L~g~~~~~~gvds~~~~~~d~~~~a~~lA~~~~~vVv 163 (265)
T 3hpd_A 114 VDVLKGNFGEISALLGEEGKTRGVDSLEYGEEEAKKLTMNAAREFNTTVA 163 (265)
T ss_dssp CSEEEEEHHHHHHHHHHHC----------CHHHHHHHHHHHHHHTTSEEE
T ss_pred CcEEcCCHHHHHHHhcccCCCCCccCccccHHHHHHHHHHHHHHhCCEEE
Confidence 578999999999986543 3333332222222334556778889987654
No 31
>1fry_A Myeloid antimicrobial peptide; random-ordered coil-loop, antimicrobial protein; NMR {Synthetic} SCOP: j.93.1.1
Probab=31.03 E-value=8.9 Score=19.07 Aligned_cols=11 Identities=18% Similarity=0.193 Sum_probs=8.5
Q ss_pred HHHhcCccccc
Q 034199 89 VRILSCGLVRH 99 (101)
Q Consensus 89 ~~~YG~~~~~~ 99 (101)
.++||++.+|-
T Consensus 14 vkkygptvlri 24 (29)
T 1fry_A 14 VKKYGPTVLRI 24 (29)
T ss_dssp TTTTSSSCSSS
T ss_pred hhhcCCceEEE
Confidence 47899988873
No 32
>2wwb_A Protein transport protein SEC61 subunit alpha ISO; ribosome, protein EXIT tunnel, cotranslational protein translocation, protein conducting channel; 6.48A {Canis lupus familiaris}
Probab=30.31 E-value=1.9e+02 Score=22.91 Aligned_cols=30 Identities=20% Similarity=0.272 Sum_probs=23.4
Q ss_pred HHHHHHHH-----hchHHHHHHHHHcCCCCCCCcc
Q 034199 22 WRVLNWVW-----LRPKKLEKFLRQQGLKGNSYRL 51 (101)
Q Consensus 22 ~~~l~~lw-----~~P~rl~r~Lr~QGI~GPpy~f 51 (101)
..++...| ..|+.+.+.|||||..=|-.|.
T Consensus 372 ~~fyt~~Wv~i~g~np~dvA~~Lkk~G~~IpGiRp 406 (476)
T 2wwb_A 372 CAFFSKTWIEVSGSSAKDVAKQLKEQQMVMRGHRE 406 (476)
T ss_dssp HHHHHHHHTTTSSCCHHHHHHHHHHHCTTTCCCCT
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHcCCccCCCCc
Confidence 34556667 7999999999999976666655
No 33
>3me7_A Putative uncharacterized protein; electron transfer protein, electron transport, structural GE PSI-2, protein structure initiative; 1.50A {Aquifex aeolicus} PDB: 3me8_A
Probab=29.59 E-value=55 Score=21.17 Aligned_cols=34 Identities=12% Similarity=0.328 Sum_probs=25.7
Q ss_pred chHHHHHHHHHcCCCCCCCccCC-CCHHHHHHHHH
Q 034199 31 RPKKLEKFLRQQGLKGNSYRLLF-GDLKENSIELK 64 (101)
Q Consensus 31 ~P~rl~r~Lr~QGI~GPpy~fl~-Gn~~E~~~~~~ 64 (101)
.|..+++..++.|+..|.+.|+. |+..++.++..
T Consensus 77 ~~~~~~~~~~~~~~~~~~w~~l~~~~~~~~~~~~~ 111 (170)
T 3me7_A 77 TLEDIKRFQKEYGIDGKGWKVVKAKTSEDLFKLLD 111 (170)
T ss_dssp CHHHHHHHHHHTTCCSSSEEEEEESSHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCCCCCeEEEeCCCHHHHHHHHH
Confidence 46788888889998888777754 77777776544
No 34
>3n9y_A Cholesterol SIDE-chain cleavage enzyme; cytochrome P450, cholesterol SIDE chain cleavage, structural genomics, structural genomics consortium, SGC; HET: HEM CLR; 2.10A {Homo sapiens} PDB: 3n9z_A* 3na1_A* 3na0_A* 3mzs_A*
Probab=27.51 E-value=25 Score=26.10 Aligned_cols=15 Identities=0% Similarity=-0.314 Sum_probs=12.2
Q ss_pred cchHHHHHHHhcCcc
Q 034199 82 NPFLHKLVRILSCGL 96 (101)
Q Consensus 82 ~P~~~~w~~~YG~~~ 96 (101)
..++.+|.++||+++
T Consensus 35 ~~~~~~l~~kYG~i~ 49 (487)
T 3n9y_A 35 HLHHVQNFQKYGPIY 49 (487)
T ss_dssp HHHHHHHHHHHCSEE
T ss_pred hHHHHHHHHHcCcee
Confidence 446889999999865
No 35
>1vq8_X 50S ribosomal protein L31E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.29.1.1 PDB: 1vq4_X* 1vq5_X* 1vq6_X* 1vq7_X* 1s72_X* 1vq9_X* 1vqk_X* 1vql_X* 1vqm_X* 1vqn_X* 1vqo_X* 1vqp_X* 1yhq_X* 1yi2_X* 1yij_X* 1yit_X* 1yj9_X* 1yjn_X* 1yjw_X* 2otj_X* ...
Probab=27.49 E-value=27 Score=22.05 Aligned_cols=18 Identities=6% Similarity=0.189 Sum_probs=15.1
Q ss_pred HHHHHHHHcCCCCCCCcc
Q 034199 34 KLEKFLRQQGLKGNSYRL 51 (101)
Q Consensus 34 rl~r~Lr~QGI~GPpy~f 51 (101)
+|-+..=++||+.|||++
T Consensus 54 ~LNk~iW~rGir~vP~rI 71 (92)
T 1vq8_X 54 SINEAAWARGRANTPSKI 71 (92)
T ss_dssp HHHHHHTTTCSSCCCSEE
T ss_pred HHHHHHHhcccCCCCceE
Confidence 566777799999999985
No 36
>1u57_A GAG polyprotein, HIV-1; particle assembly, viral protein; NMR {Human immunodeficiency virus 1}
Probab=26.43 E-value=19 Score=19.63 Aligned_cols=10 Identities=30% Similarity=0.474 Sum_probs=8.3
Q ss_pred HcCCCCCCCc
Q 034199 41 QQGLKGNSYR 50 (101)
Q Consensus 41 ~QGI~GPpy~ 50 (101)
-||+.||.++
T Consensus 8 cqgvggp~hK 17 (48)
T 1u57_A 8 CQGVGGPGHK 17 (48)
T ss_dssp BTTTSBCTTH
T ss_pred ccCCCCCcch
Confidence 4999999875
No 37
>1n97_A CYP175A1; electron transport; HET: SRT HEM; 1.80A {Thermus thermophilus} SCOP: a.104.1.1 PDB: 1wiy_A*
Probab=25.98 E-value=8.8 Score=28.26 Aligned_cols=34 Identities=18% Similarity=-0.021 Sum_probs=22.6
Q ss_pred CCCCccCCCCHHHHHHHHHHhhcCCCCCCCCccccccchHHHHHHHhcCccc
Q 034199 46 GNSYRLLFGDLKENSIELKEAKARPLSLDDNIAIRVNPFLHKLVRILSCGLV 97 (101)
Q Consensus 46 GPpy~fl~Gn~~E~~~~~~~a~s~p~~~sHDi~prV~P~~~~w~~~YG~~~~ 97 (101)
+++-..++||+.++.+ | | .+++.+|.++||+++-
T Consensus 3 ~~~~~p~iGnl~~~~~--------------~--p--~~~~~~l~~~yGpv~~ 36 (389)
T 1n97_A 3 RLSLREAWPYLKDLQQ--------------D--P--LAVLLAWGRAHPRLFL 36 (389)
T ss_dssp ECCHHHHHHHHHHHHH--------------C--H--HHHHHHHHHHCSEEEE
T ss_pred ccccccccccHHHHhh--------------C--h--HHHHHHHHHHcCCeeE
Confidence 3444456788776632 1 1 4688999999998764
No 38
>3aba_A Cytochrome P450; oxidoreductase, heme, monooxygenase, macrolide, filipi metal-binding, oxidoreductase-antibiotic complex; HET: HEM FLI; 1.80A {Streptomyces avermitilis} PDB: 3e5j_A* 3e5k_A* 3e5l_A*
Probab=25.52 E-value=44 Score=24.64 Aligned_cols=23 Identities=4% Similarity=-0.156 Sum_probs=16.9
Q ss_pred CCCCccccccchHHHHHHHhcCcc
Q 034199 73 LDDNIAIRVNPFLHKLVRILSCGL 96 (101)
Q Consensus 73 ~sHDi~prV~P~~~~w~~~YG~~~ 96 (101)
++.++...-.++|.+| ++||+++
T Consensus 13 ~~~~~~~~p~~~~~~l-~~yGpv~ 35 (403)
T 3aba_A 13 KARSCPFLPPDGIADI-RAAAPVT 35 (403)
T ss_dssp CCCSSTTSCCTTHHHH-HHHCSEE
T ss_pred CCcccccChhHHHHHH-HhcCCee
Confidence 3455555567889999 8999875
No 39
>4fb2_A P450CIN; heme, monooxygenase, cindoxin, oxidoreductase; HET: HEM EDO; 1.37A {Citrobacter braakii} PDB: 4fmx_A* 4fyz_A* 1t2b_A* 3bdz_A* 3be0_A*
Probab=24.88 E-value=40 Score=24.71 Aligned_cols=21 Identities=10% Similarity=-0.175 Sum_probs=17.0
Q ss_pred CccccccchHHHHHHHh--cCcc
Q 034199 76 NIAIRVNPFLHKLVRIL--SCGL 96 (101)
Q Consensus 76 Di~prV~P~~~~w~~~Y--G~~~ 96 (101)
++...-.++|.+|.++| |+++
T Consensus 16 ~~~~~p~~~~~~l~~~Y~~Gpv~ 38 (398)
T 4fb2_A 16 GPDGTPHAFFEALRDEAETTPIG 38 (398)
T ss_dssp CTTSSSHHHHHHHHHHHTTCSEE
T ss_pred hhhcChhHHHHHHHhcCCCCCeE
Confidence 45556678999999999 9875
No 40
>3abb_A CYP105D6, cytochrome P450 hydroxylase; oxidoreductase, heme, monooxygenase, macrolide, filipi metal-binding; HET: HEM; 2.30A {Streptomyces avermitilis}
Probab=24.25 E-value=25 Score=25.99 Aligned_cols=24 Identities=13% Similarity=-0.159 Sum_probs=18.2
Q ss_pred CCCCCccccccchHHHHHHHhcCcc
Q 034199 72 SLDDNIAIRVNPFLHKLVRILSCGL 96 (101)
Q Consensus 72 ~~sHDi~prV~P~~~~w~~~YG~~~ 96 (101)
+++.++...-.+.+.+| ++||+++
T Consensus 17 p~~~~~~~~p~~~~~~l-~~yGpv~ 40 (408)
T 3abb_A 17 PQDRTCPYQPPKAYEER-RGESPLT 40 (408)
T ss_dssp CCCCSSTTSCCHHHHHH-CCSSSEE
T ss_pred CCCcccccCchHHHHHH-HhcCCee
Confidence 34566666667889999 8999875
No 41
>3n0w_A ABC branched chain amino acid family transporter, periplasmic ligand binding protein...; receptor family ligand binding region; HET: MSE; 1.88A {Burkholderia xenovorans}
Probab=23.26 E-value=1e+02 Score=21.98 Aligned_cols=62 Identities=15% Similarity=0.077 Sum_probs=34.4
Q ss_pred HHHHHHHHcCCCCCCCccC--CCCHHHHHHHHHHhhcCC---CCCCCCccccccchHHHHHHHhcCc
Q 034199 34 KLEKFLRQQGLKGNSYRLL--FGDLKENSIELKEAKARP---LSLDDNIAIRVNPFLHKLVRILSCG 95 (101)
Q Consensus 34 rl~r~Lr~QGI~GPpy~fl--~Gn~~E~~~~~~~a~s~p---~~~sHDi~prV~P~~~~w~~~YG~~ 95 (101)
.+-+.++++|+++|-+-+. .....++.++-.++...- .+...|..|..-.|...+.++||..
T Consensus 212 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~f~~~~~~~~g~~ 278 (379)
T 3n0w_A 212 NIMKQAREFGLPSKTQKVGGMIDILTDVKSAGLRVMQGQEYATSFYWNMDDRTRAFAKRFYAKMGKM 278 (379)
T ss_dssp HHHHHHHHTTCSCSSCEEECCBCCHHHHHHHCHHHHTTCEEEESCCTTSSHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHcCCCCCCcEEEecccchHHHHhhCHHhhCCeEEEeeecCCCCHHHHHHHHHHHHHHCCC
Confidence 3457789999998843321 123455544422221111 1122233567777888888899864
No 42
>3iz5_h 60S ribosomal protein L32 (L32E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_h 2zkr_9
Probab=23.19 E-value=7.5 Score=26.36 Aligned_cols=52 Identities=12% Similarity=0.282 Sum_probs=29.8
Q ss_pred HHhchHHH----HHHHHHcC------CCCC------CC----ccCCCCHHHHHHHHHHhhcCCCCCCCCccc
Q 034199 28 VWLRPKKL----EKFLRQQG------LKGN------SY----RLLFGDLKENSIELKEAKARPLSLDDNIAI 79 (101)
Q Consensus 28 lw~~P~rl----~r~Lr~QG------I~GP------py----~fl~Gn~~E~~~~~~~a~s~p~~~sHDi~p 79 (101)
-|++|+=+ ++.++.|+ .+.| -| .|++-|.+|+..+....++....+.|.+-.
T Consensus 32 ~WRKPrGiDnrvRrrfkG~~~mp~iGYgS~kktr~l~PsGf~~~lV~NvkeLe~L~m~n~~~aaeIAh~Vs~ 103 (133)
T 3iz5_h 32 SWRRPKGIDSRVRRKFKGCTLMPNIGYGSDKKTRHYLPNKFKKFVVHNVSELELLMMHNRTYCAEIAHNVST 103 (133)
T ss_dssp SCCCCCSTTCHHHHTCTTSCCCCCGGGCCCTTTTTBCTTSCEEEEESSHHHHHHHHHHTTSEEEEECSSSCH
T ss_pred CCCCCCCcccchhccccCCcCCCccCCCCChhhcccCCCCCeEEEeCCHHHHHHHhcCCCccEEEEecCccc
Confidence 48889854 45555553 2222 11 267789999887765444433345565543
No 43
>2zkr_x 60S ribosomal protein L31; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=22.19 E-value=44 Score=22.26 Aligned_cols=18 Identities=28% Similarity=0.667 Sum_probs=15.1
Q ss_pred HHHHHHHHcCCCCCCCcc
Q 034199 34 KLEKFLRQQGLKGNSYRL 51 (101)
Q Consensus 34 rl~r~Lr~QGI~GPpy~f 51 (101)
+|-+..=+.||+.||+++
T Consensus 67 ~LNk~IWskGirnvP~rI 84 (125)
T 2zkr_x 67 RLNKAVWAKGIRNVPYRI 84 (125)
T ss_dssp HHHHHHHTTCSSCCCSEE
T ss_pred HHHHHHHhccCCCCCceE
Confidence 556677799999999986
No 44
>4a17_W RPL31, 60S ribosomal protein L31; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_W 4a1c_W 4a1e_W
Probab=21.54 E-value=47 Score=21.66 Aligned_cols=18 Identities=28% Similarity=0.615 Sum_probs=15.2
Q ss_pred HHHHHHHHcCCCCCCCcc
Q 034199 34 KLEKFLRQQGLKGNSYRL 51 (101)
Q Consensus 34 rl~r~Lr~QGI~GPpy~f 51 (101)
+|-+..=+.||+.|||++
T Consensus 53 ~LNk~vWakGirnvP~rI 70 (111)
T 4a17_W 53 ELNKFIWSNGIRNIPRRV 70 (111)
T ss_dssp HHHHHHHTTCSSSCCSEE
T ss_pred HHHHHHHhccccCCCcEE
Confidence 566777899999999986
No 45
>2xbk_A PIMD protein; epoxidation, oxidoreductase; HET: HEM XBK; 1.95A {Streptomyces natalensis} PDB: 2x9p_A*
Probab=21.29 E-value=51 Score=24.50 Aligned_cols=22 Identities=14% Similarity=0.164 Sum_probs=15.9
Q ss_pred CCCccccccchHHHHHHHhcCcc
Q 034199 74 DDNIAIRVNPFLHKLVRILSCGL 96 (101)
Q Consensus 74 sHDi~prV~P~~~~w~~~YG~~~ 96 (101)
+.++...-.+++.+| ++||+++
T Consensus 21 ~~~~~~~p~~~~~~l-~~yGpv~ 42 (404)
T 2xbk_A 21 EPPKMLKLSPLLRAL-QDRGPIH 42 (404)
T ss_dssp CCCBTTBCCHHHHHH-HHHCSEE
T ss_pred CcccccCccHHHHHH-HhhCCEe
Confidence 334444557789999 8999875
No 46
>4hde_A SCO1/SENC family lipoprotein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; HET: MSE; 1.32A {Bacillus anthracis}
Probab=21.26 E-value=94 Score=20.13 Aligned_cols=35 Identities=23% Similarity=0.411 Sum_probs=26.1
Q ss_pred chHHHHHHHHHcCCCCCCCccCCCC-HHHHHHHHHH
Q 034199 31 RPKKLEKFLRQQGLKGNSYRLLFGD-LKENSIELKE 65 (101)
Q Consensus 31 ~P~rl~r~Lr~QGI~GPpy~fl~Gn-~~E~~~~~~~ 65 (101)
.|.++++..++.|...+...++.|. ..++.+....
T Consensus 82 tp~~l~~y~~~~~~~~~~~~~ltg~~~~~~~~~~~~ 117 (170)
T 4hde_A 82 KPENLKAFIQKFTEDTSNWNLLTGYSLEDITKFSKD 117 (170)
T ss_dssp CHHHHHHHHTTTCSCCTTEEEEBCSCHHHHHHHHHH
T ss_pred cHHHHHHHHHHcCCCCCCceecCcccHHHHHHHHHh
Confidence 4778888888889988888888885 5555555443
No 47
>1neq_A DNA-binding protein NER; NMR {Enterobacteria phage MU} SCOP: a.35.1.2 PDB: 1ner_A
Probab=20.12 E-value=52 Score=19.11 Aligned_cols=15 Identities=13% Similarity=0.118 Sum_probs=12.4
Q ss_pred hchHHHHHHHHHcCC
Q 034199 30 LRPKKLEKFLRQQGL 44 (101)
Q Consensus 30 ~~P~rl~r~Lr~QGI 44 (101)
|.|.++.+.++++|+
T Consensus 9 ~~~~ri~~~l~~~gl 23 (74)
T 1neq_A 9 WHRADVIAGLKKRKL 23 (74)
T ss_dssp CCHHHHHHHHHTTSC
T ss_pred CCHHHHHHHHHHcCC
Confidence 568888888888886
Done!