Query 034199
Match_columns 101
No_of_seqs 104 out of 396
Neff 6.0
Searched_HMMs 13730
Date Mon Mar 25 18:36:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034199.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/034199hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1tqna_ a.104.1.1 (A:) Mammali 94.4 0.011 8.3E-07 42.2 2.9 41 38-96 5-45 (472)
2 d3czha1 a.104.1.1 (A:40-502) V 80.4 0.52 3.8E-05 32.6 2.8 36 46-96 3-38 (463)
3 d2ij2a1 a.104.1.1 (A:3-455) Cy 74.7 0.23 1.7E-05 35.4 -0.6 38 42-96 1-38 (453)
4 d1r9oa_ a.104.1.1 (A:) Mammali 72.0 0.39 2.9E-05 33.5 0.2 34 46-96 7-40 (467)
5 d2ciba1 a.104.1.1 (A:5-449) Cy 56.9 2.6 0.00019 29.3 2.2 34 45-96 4-37 (445)
6 d1po5a_ a.104.1.1 (A:) Mammali 50.2 3.6 0.00026 28.4 1.9 35 45-96 5-39 (465)
7 d1n97a_ a.104.1.1 (A:) Cyp175a 31.3 6.3 0.00046 27.2 0.7 18 81-98 20-37 (385)
8 d1ekqa_ c.72.1.2 (A:) Hydroxye 31.0 4.9 0.00036 28.0 0.0 49 48-97 116-166 (269)
9 d2odgc1 a.140.1.1 (C:2-47) Inn 28.0 16 0.0011 19.1 1.8 14 34-47 10-24 (46)
10 d2guka1 d.360.1.1 (A:4-114) Hy 27.8 12 0.00086 23.1 1.5 42 35-76 37-89 (111)
11 d1v8aa_ c.72.1.2 (A:) Hydroxye 26.9 12 0.00084 25.8 1.5 49 49-97 114-163 (264)
12 d2hgka1 a.29.17.1 (A:1-109) Hy 24.4 33 0.0024 20.7 3.1 17 34-50 13-30 (109)
13 d1ulza3 d.142.1.2 (A:115-328) 23.2 55 0.004 20.4 4.4 32 34-65 3-35 (214)
14 d2gmfa_ a.26.1.2 (A:) Granuloc 23.0 9.1 0.00066 23.8 0.2 19 31-49 48-68 (121)
15 d1rh5a_ f.41.1.1 (A:) Preprote 21.1 73 0.0053 22.8 5.1 27 23-49 331-358 (422)
No 1
>d1tqna_ a.104.1.1 (A:) Mammalian cytochrome P450 3a4 {Human (Homo sapiens) [TaxId: 9606]}
Probab=94.41 E-value=0.011 Score=42.23 Aligned_cols=41 Identities=10% Similarity=0.112 Sum_probs=31.4
Q ss_pred HHHHcCCCCCCCccCCCCHHHHHHHHHHhhcCCCCCCCCccccccchHHHHHHHhcCcc
Q 034199 38 FLRQQGLKGNSYRLLFGDLKENSIELKEAKARPLSLDDNIAIRVNPFLHKLVRILSCGL 96 (101)
Q Consensus 38 ~Lr~QGI~GPpy~fl~Gn~~E~~~~~~~a~s~p~~~sHDi~prV~P~~~~w~~~YG~~~ 96 (101)
.++|-||-||++=.++||+-++.+ ...-++.+|.++||++|
T Consensus 5 ~~~~~~iPGP~~~P~iG~~~~~~~------------------~~~~~~~~~~~kyG~i~ 45 (472)
T d1tqna_ 5 LFKKLGIPGPTPLPFLGNILSYHK------------------GFCMFDMECHKKYGKVW 45 (472)
T ss_dssp HHHHTTCCCCCCBTTTBTGGGGGG------------------CHHHHHHHHHHHHCSEE
T ss_pred chhhcCCCCCCCcCceeEHHHhhC------------------CHHHHHHHHHHHhCCEE
Confidence 467889999998778899866532 22347889999999875
No 2
>d3czha1 a.104.1.1 (A:40-502) Vitamin D 25-hydroxylase Cyp2R1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=80.39 E-value=0.52 Score=32.58 Aligned_cols=36 Identities=8% Similarity=0.136 Sum_probs=25.2
Q ss_pred CCCCccCCCCHHHHHHHHHHhhcCCCCCCCCccccccchHHHHHHHhcCcc
Q 034199 46 GNSYRLLFGDLKENSIELKEAKARPLSLDDNIAIRVNPFLHKLVRILSCGL 96 (101)
Q Consensus 46 GPpy~fl~Gn~~E~~~~~~~a~s~p~~~sHDi~prV~P~~~~w~~~YG~~~ 96 (101)
||+.=.++||+.++.. +.+ . ..-++++|.++||++|
T Consensus 3 GP~~~P~iG~~~~~~~------------~~~-~--~~~~~~~~~~kyG~if 38 (463)
T d3czha1 3 GPPGLPFIGNIYSLAA------------SSE-L--PHVYMRKQSQVYGEIF 38 (463)
T ss_dssp CCCCBTTTBHHHHHHH------------CSS-C--HHHHHHHHHHHHCSEE
T ss_pred CCCCcCccccHHHhhC------------CCC-c--HHHHHHHHHHHhCCEE
Confidence 7876678899988754 011 0 1237899999999875
No 3
>d2ij2a1 a.104.1.1 (A:3-455) Cytochrome P450 bm-3 {Bacillus megaterium [TaxId: 1404]}
Probab=74.70 E-value=0.23 Score=35.35 Aligned_cols=38 Identities=13% Similarity=-0.049 Sum_probs=27.2
Q ss_pred cCCCCCCCccCCCCHHHHHHHHHHhhcCCCCCCCCccccccchHHHHHHHhcCcc
Q 034199 42 QGLKGNSYRLLFGDLKENSIELKEAKARPLSLDDNIAIRVNPFLHKLVRILSCGL 96 (101)
Q Consensus 42 QGI~GPpy~fl~Gn~~E~~~~~~~a~s~p~~~sHDi~prV~P~~~~w~~~YG~~~ 96 (101)
+-|-||+.-.++||+.++. +.+ ..-++.+|.++||++|
T Consensus 1 r~iPGP~~~p~lG~l~~l~-------------~~~----~~~~~~~~~~kyG~if 38 (453)
T d2ij2a1 1 KEMPQPKTFGELKNLPLLN-------------TDK----PVQALMKIADELGEIF 38 (453)
T ss_dssp CCCCCCCCCGGGTTGGGGC-------------SSC----HHHHHHHHHHHHCSEE
T ss_pred CCCccCCCcchhhCHHHhC-------------CCC----HHHHHHHHHHHhCCEE
Confidence 3578998878899986541 112 2457899999999864
No 4
>d1r9oa_ a.104.1.1 (A:) Mammalian cytochrome p450 2c9 {Human (Homo sapiens) [TaxId: 9606]}
Probab=71.98 E-value=0.39 Score=33.52 Aligned_cols=34 Identities=15% Similarity=0.250 Sum_probs=19.1
Q ss_pred CCCCccCCCCHHHHHHHHHHhhcCCCCCCCCccccccchHHHHHHHhcCcc
Q 034199 46 GNSYRLLFGDLKENSIELKEAKARPLSLDDNIAIRVNPFLHKLVRILSCGL 96 (101)
Q Consensus 46 GPpy~fl~Gn~~E~~~~~~~a~s~p~~~sHDi~prV~P~~~~w~~~YG~~~ 96 (101)
||++-.++||+.++.. + ....++.+|.++||+++
T Consensus 7 GP~~~P~lG~~~~l~~-------------~----~~~~~~~~~~~kyG~i~ 40 (467)
T d1r9oa_ 7 GPTPLPVIGNILQIGI-------------K----DISKSLTNLSKVYGPVF 40 (467)
T ss_dssp CSSSCC-----CCBCH-------------H----HHHHHHHHHHHHHCSEE
T ss_pred CCCCCCccccHHHhCC-------------c----CHHHHHHHHHHHhCCEE
Confidence 7777778899855421 1 12456889999999875
No 5
>d2ciba1 a.104.1.1 (A:5-449) Cytochrome p450 14 alpha-sterol demethylase (cyp51) {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=56.87 E-value=2.6 Score=29.34 Aligned_cols=34 Identities=12% Similarity=-0.024 Sum_probs=25.3
Q ss_pred CCCCCccCCCCHHHHHHHHHHhhcCCCCCCCCccccccchHHHHHHHhcCcc
Q 034199 45 KGNSYRLLFGDLKENSIELKEAKARPLSLDDNIAIRVNPFLHKLVRILSCGL 96 (101)
Q Consensus 45 ~GPpy~fl~Gn~~E~~~~~~~a~s~p~~~sHDi~prV~P~~~~w~~~YG~~~ 96 (101)
.||..-.++||+.+..+ | -..++.++.++||++|
T Consensus 4 ~~p~~~P~iG~~~~f~~--------------d----~~~f~~~~~~kyG~if 37 (445)
T d2ciba1 4 RVSGGHDEHGHLEEFRT--------------D----PIGLMQRVRDELGDVG 37 (445)
T ss_dssp BCSCCCBTTBTHHHHTT--------------C----HHHHHHHHHHHHCSEE
T ss_pred CCCCCcCcCcCHHHHhH--------------C----HHHHHHHHHHHHCCEE
Confidence 36777778999888732 1 1457899999999975
No 6
>d1po5a_ a.104.1.1 (A:) Mammalian cytochrome p450 2b4 {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Probab=50.17 E-value=3.6 Score=28.41 Aligned_cols=35 Identities=14% Similarity=0.067 Sum_probs=23.8
Q ss_pred CCCCCccCCCCHHHHHHHHHHhhcCCCCCCCCccccccchHHHHHHHhcCcc
Q 034199 45 KGNSYRLLFGDLKENSIELKEAKARPLSLDDNIAIRVNPFLHKLVRILSCGL 96 (101)
Q Consensus 45 ~GPpy~fl~Gn~~E~~~~~~~a~s~p~~~sHDi~prV~P~~~~w~~~YG~~~ 96 (101)
-||++=.++||+.++.+ +| ..-++.+|.++||++|
T Consensus 5 PgP~~~P~lG~~~~~~~-------------~~----~~~~~~~~~~kyG~vf 39 (465)
T d1po5a_ 5 PGPSPLPVLGNLLQMDR-------------KG----LLRSFLRLREKYGDVF 39 (465)
T ss_dssp CCSCCBTTTBTGGGCCT-------------TC----HHHHHHHHHHHHCSEE
T ss_pred CCCCCcCccccHHHhcC-------------cC----HHHHHHHHHHHhCCEE
Confidence 47766567899855421 22 2357889999999975
No 7
>d1n97a_ a.104.1.1 (A:) Cyp175a1 {Thermus thermophilus [TaxId: 274]}
Probab=31.34 E-value=6.3 Score=27.16 Aligned_cols=18 Identities=11% Similarity=-0.145 Sum_probs=15.5
Q ss_pred ccchHHHHHHHhcCcccc
Q 034199 81 VNPFLHKLVRILSCGLVR 98 (101)
Q Consensus 81 V~P~~~~w~~~YG~~~~~ 98 (101)
-.+++.+|.++||.+|++
T Consensus 20 p~~~~~~~~~kyg~v~~~ 37 (385)
T d1n97a_ 20 PLAVLLAWGRAHPRLFLP 37 (385)
T ss_dssp HHHHHHHHHHHCSEEEEC
T ss_pred HHHHHHHHHHHCCCEEEE
Confidence 367899999999999865
No 8
>d1ekqa_ c.72.1.2 (A:) Hydroxyethylthiazole kinase (THZ kinase, ThiK) {Bacillus subtilis [TaxId: 1423]}
Probab=31.00 E-value=4.9 Score=27.96 Aligned_cols=49 Identities=6% Similarity=-0.016 Sum_probs=27.4
Q ss_pred CCccCCCCHHHHHHHHHH--hhcCCCCCCCCccccccchHHHHHHHhcCccc
Q 034199 48 SYRLLFGDLKENSIELKE--AKARPLSLDDNIAIRVNPFLHKLVRILSCGLV 97 (101)
Q Consensus 48 py~fl~Gn~~E~~~~~~~--a~s~p~~~sHDi~prV~P~~~~w~~~YG~~~~ 97 (101)
.|+.+-||..|+.++... +..+..+ +.|-..-..-.-.++.++||++.+
T Consensus 116 ~~tVI~gN~~Ei~~L~g~~~~~~~gvd-~~~~~~d~~~~A~~la~~~~~vVv 166 (269)
T d1ekqa_ 116 RLAAIRGNAAEIAHTVGVTDWLIKGVD-AGEGGGDIIRLAQQAAQKLNTVIA 166 (269)
T ss_dssp CCSEEEECHHHHHHHCC----------------HHHHHHHHHHHHHHTSEEE
T ss_pred CCceEcCCHHHHHHHhCCccCCcCCcC-CcccHHHHHHHHHHHHHhcCCEEE
Confidence 458899999999998532 2222222 233333344567888999998754
No 9
>d2odgc1 a.140.1.1 (C:2-47) Inner nuclear membrane protein emerin {Human (Homo sapiens) [TaxId: 9606]}
Probab=28.04 E-value=16 Score=19.08 Aligned_cols=14 Identities=29% Similarity=0.600 Sum_probs=10.7
Q ss_pred HHHHHHHHcCC-CCC
Q 034199 34 KLEKFLRQQGL-KGN 47 (101)
Q Consensus 34 rl~r~Lr~QGI-~GP 47 (101)
-|.+.|++-|| .||
T Consensus 10 El~~lL~~y~I~HGP 24 (46)
T d2odgc1 10 ELTTLLRRYNIPHGP 24 (46)
T ss_dssp HHHHHHHHTTCCCCC
T ss_pred HHHHHHHHhCCCCCC
Confidence 46788999999 455
No 10
>d2guka1 d.360.1.1 (A:4-114) Hypothetical protein PG1857 {Porphyromonas gingivalis [TaxId: 837]}
Probab=27.80 E-value=12 Score=23.08 Aligned_cols=42 Identities=21% Similarity=0.236 Sum_probs=29.2
Q ss_pred HHHHHHHcCC-------CCC-CCccCCCCHHHHHHHHHHhhcCCCC-CC--CC
Q 034199 35 LEKFLRQQGL-------KGN-SYRLLFGDLKENSIELKEAKARPLS-LD--DN 76 (101)
Q Consensus 35 l~r~Lr~QGI-------~GP-py~fl~Gn~~E~~~~~~~a~s~p~~-~s--HD 76 (101)
+.++|++||| .+| .-++++|...-|..++.-...+|++ +| +|
T Consensus 37 ~~~rL~~~~I~y~iq~v~~~~kvNlFFG~~~ci~~ir~~~~~rpL~~lt~EED 89 (111)
T d2guka1 37 AEERLRSRQIPYFAQPTPNTERTNLFFGCKECMEAIRLFVSGRSLNSLTPEED 89 (111)
T ss_dssp HHHHHHHTTCCEEEECCTTSSEEEEEEECHHHHHHHHHHHTTSCGGGCCHHHH
T ss_pred HHHHHhhCCCCeEEEEcCCCCeEEEEeCCHHHHHHHHHHHcCCchhhCChHHH
Confidence 3578999998 244 4568999987777766655667775 54 55
No 11
>d1v8aa_ c.72.1.2 (A:) Hydroxyethylthiazole kinase (THZ kinase, ThiK) {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Probab=26.89 E-value=12 Score=25.80 Aligned_cols=49 Identities=18% Similarity=0.131 Sum_probs=28.0
Q ss_pred CccCCCCHHHHHHHHHHh-hcCCCCCCCCccccccchHHHHHHHhcCccc
Q 034199 49 YRLLFGDLKENSIELKEA-KARPLSLDDNIAIRVNPFLHKLVRILSCGLV 97 (101)
Q Consensus 49 y~fl~Gn~~E~~~~~~~a-~s~p~~~sHDi~prV~P~~~~w~~~YG~~~~ 97 (101)
++++-||..|+.++.... .++..+-..+......-...+..++||.+.+
T Consensus 114 ~~vItgN~~Ei~~L~g~~~~~~gvd~~~~~~~d~~~~a~~lA~~~~~vVv 163 (264)
T d1v8aa_ 114 VDVLKGNFGEISALLGEEGKTRGVDSLEYGEEEAKKLTMNAAREFNTTVA 163 (264)
T ss_dssp CSEEEEEHHHHHHHHHHHC----------CHHHHHHHHHHHHHHTTSEEE
T ss_pred CcEEcCCHHHHHHHhCcccCCCCCCcccccHHHHHHHHHHHHHHhCCEEE
Confidence 678899999999987543 3333332222223334556788889988654
No 12
>d2hgka1 a.29.17.1 (A:1-109) Hypothetical protein YqcC {Escherichia coli [TaxId: 562]}
Probab=24.41 E-value=33 Score=20.69 Aligned_cols=17 Identities=24% Similarity=0.421 Sum_probs=13.2
Q ss_pred HHHHHHHHcCC-CCCCCc
Q 034199 34 KLEKFLRQQGL-KGNSYR 50 (101)
Q Consensus 34 rl~r~Lr~QGI-~GPpy~ 50 (101)
.||..||++|+ ...+|+
T Consensus 13 ~LE~~Lr~~~lW~~~~Ps 30 (109)
T d2hgka1 13 ALEALLREHQHWRNDEPQ 30 (109)
T ss_dssp HHHHHHHHTTCCCCCCCC
T ss_pred HHHHHHHHcCCCCCCCCC
Confidence 68999999998 555554
No 13
>d1ulza3 d.142.1.2 (A:115-328) Biotin carboxylase (BC), domain 2 {Aquifex aeolicus [TaxId: 63363]}
Probab=23.25 E-value=55 Score=20.35 Aligned_cols=32 Identities=13% Similarity=0.203 Sum_probs=23.9
Q ss_pred HHHHHHHHcCCCCCC-CccCCCCHHHHHHHHHH
Q 034199 34 KLEKFLRQQGLKGNS-YRLLFGDLKENSIELKE 65 (101)
Q Consensus 34 rl~r~Lr~QGI~GPp-y~fl~Gn~~E~~~~~~~ 65 (101)
+-++.|++.|+.-+| +..++.|..|..+...+
T Consensus 3 ~~k~~~~~aGvP~~p~~~~~v~s~~ea~~~~~~ 35 (214)
T d1ulza3 3 RSKEVMKKAGVPVVPGSDGVLKSLEEAKALARE 35 (214)
T ss_dssp HHHHHHHHTTCCBCCBCSSSCCCHHHHHHHHHH
T ss_pred HHHHHHHHcCCCcCCCcCCCCCCHHHHHHHHHH
Confidence 456789999997634 44678999998886554
No 14
>d2gmfa_ a.26.1.2 (A:) Granulocyte-macrophage colony-stimulating factor (GM-CSF) {Human (Homo sapiens) [TaxId: 9606]}
Probab=23.00 E-value=9.1 Score=23.79 Aligned_cols=19 Identities=37% Similarity=0.546 Sum_probs=12.7
Q ss_pred chHHHHHHH--HHcCCCCCCC
Q 034199 31 RPKKLEKFL--RQQGLKGNSY 49 (101)
Q Consensus 31 ~P~rl~r~L--r~QGI~GPpy 49 (101)
+|..++.+| =+||++|.--
T Consensus 48 ePTClQtRL~LYkqGLrGslt 68 (121)
T d2gmfa_ 48 EPTCLQTRLELYKQGLRGSLT 68 (121)
T ss_dssp SCCSHHHHHHHHHHTCCGGGG
T ss_pred CCcHHHHHHHHHHhhccccHH
Confidence 455566554 4999999543
No 15
>d1rh5a_ f.41.1.1 (A:) Preprotein translocase SecY subunit {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=21.12 E-value=73 Score=22.85 Aligned_cols=27 Identities=19% Similarity=0.195 Sum_probs=12.5
Q ss_pred HHHHHHH-hchHHHHHHHHHcCCCCCCC
Q 034199 23 RVLNWVW-LRPKKLEKFLRQQGLKGNSY 49 (101)
Q Consensus 23 ~~l~~lw-~~P~rl~r~Lr~QGI~GPpy 49 (101)
.++...- ..|+.+.+.|+|||..=|-.
T Consensus 331 ~f~~~~~~~~p~~iAe~lkk~g~~IpGi 358 (422)
T d1rh5a_ 331 IFWVETTGLDPKSMAKRIGSLGMAIKGF 358 (422)
T ss_dssp HHHHHHHTCSHHHHHHHC----------
T ss_pred HHHHHHhCCCHHHHHHHHHHcCCcCCCC
Confidence 3444444 78999999999999744433
Done!