BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 034200
(101 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9CRC3|CO040_MOUSE UPF0235 protein C15orf40 homolog OS=Mus musculus PE=2 SV=1
Length = 126
Score = 62.8 bits (151), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 39/83 (46%), Positives = 48/83 (57%), Gaps = 6/83 (7%)
Query: 8 KSKAKSAGSTQSKIKTNDENLPSCIRLV---PPSSVSITIHAKPGSKSCSITDVSDEAVG 64
K+ A S G Q+K E P V P V+I IHAKPGS+ ++TD+S EAVG
Sbjct: 4 KAGATSKGKNQTK---EPETAPPAAGPVATDPKGFVTIAIHAKPGSRQNAVTDLSTEAVG 60
Query: 65 VQIDAPAKDGEANAALLEYMSSV 87
V I AP +GEANA L Y+S V
Sbjct: 61 VAIAAPPSEGEANAELCRYLSKV 83
>sp|Q3ZBP8|CO040_BOVIN UPF0235 protein C15orf40 homolog OS=Bos taurus PE=2 SV=1
Length = 126
Score = 62.8 bits (151), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 39/82 (47%), Positives = 48/82 (58%), Gaps = 4/82 (4%)
Query: 8 KSKAKSAGSTQSKIKTNDENLPSC--IRLVPPSSVSITIHAKPGSKSCSITDVSDEAVGV 65
K A + G QSK + LP + + P VSI IHAKPGSK ++TDV+ EAV V
Sbjct: 4 KCGATNKGKNQSK--EPERPLPPLGPVTVDPKGGVSIAIHAKPGSKQNAVTDVTTEAVSV 61
Query: 66 QIDAPAKDGEANAALLEYMSSV 87
I AP +GEANA L Y+S V
Sbjct: 62 AIAAPPTEGEANAELCRYLSKV 83
>sp|Q505I4|CO040_RAT UPF0235 protein C15orf40 homolog OS=Rattus norvegicus PE=2 SV=1
Length = 126
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/80 (43%), Positives = 45/80 (56%)
Query: 8 KSKAKSAGSTQSKIKTNDENLPSCIRLVPPSSVSITIHAKPGSKSCSITDVSDEAVGVQI 67
K+ A S G Q+K + V+I IHAKPGSK ++TD++ EAVGV I
Sbjct: 4 KAGATSKGKNQTKEPETPPPPTGPVATDSKGFVTIAIHAKPGSKQNAVTDLNTEAVGVAI 63
Query: 68 DAPAKDGEANAALLEYMSSV 87
AP +GEANA L Y+S V
Sbjct: 64 AAPPSEGEANAELCRYLSKV 83
>sp|Q8WUR7|CO040_HUMAN UPF0235 protein C15orf40 OS=Homo sapiens GN=C15orf40 PE=1 SV=1
Length = 126
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/81 (45%), Positives = 50/81 (61%), Gaps = 5/81 (6%)
Query: 12 KSAGST---QSKIKTNDENLPSC--IRLVPPSSVSITIHAKPGSKSCSITDVSDEAVGVQ 66
K AG+T +S+ K + LP + + P V+I IHAKPGSK ++TD++ EAV V
Sbjct: 3 KKAGATTKGKSQSKEPERPLPPLGPVAVDPKGCVTIAIHAKPGSKQNAVTDLTAEAVNVA 62
Query: 67 IDAPAKDGEANAALLEYMSSV 87
I AP +GEANA L Y+S V
Sbjct: 63 IAAPPSEGEANAELCRYLSKV 83
>sp|A1KB74|Y3464_AZOSB UPF0235 protein azo3464 OS=Azoarcus sp. (strain BH72) GN=azo3464
PE=3 SV=1
Length = 98
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 34/54 (62%)
Query: 32 IRLVPPSSVSITIHAKPGSKSCSITDVSDEAVGVQIDAPAKDGEANAALLEYMS 85
+R S+++T+H +PG++ + EA+ +++ AP DG+ANAAL +++
Sbjct: 5 VREAADGSLTLTLHIQPGARQTGFAGLHGEAMKIRLAAPPVDGKANAALCAFLA 58
>sp|C1D6C4|Y3181_LARHH UPF0235 protein LHK_03181 OS=Laribacter hongkongensis (strain
HLHK9) GN=LHK_03181 PE=3 SV=1
Length = 97
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 31/47 (65%)
Query: 39 SVSITIHAKPGSKSCSITDVSDEAVGVQIDAPAKDGEANAALLEYMS 85
V +T+H +PG++ + + +A+ +++ AP DG+ANA LL +++
Sbjct: 10 GVRLTLHVQPGARRTEVAGLHGDALKIRLAAPPVDGKANACLLAFLA 56
>sp|O28207|Y2072_ARCFU UPF0235 protein AF_2072 OS=Archaeoglobus fulgidus (strain ATCC
49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126)
GN=AF_2072 PE=3 SV=1
Length = 78
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/43 (48%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
Query: 40 VSITIHAKPGSKSCSIT-DVSDEAVGVQIDAPAKDGEANAALL 81
V I++H PGSK S + D AV V+I +PAK+G+AN LL
Sbjct: 8 VLISVHVSPGSKEVSFSYDEWRRAVEVRIKSPAKEGKANRELL 50
>sp|Q478W6|Y3887_DECAR UPF0235 protein Daro_3887 OS=Dechloromonas aromatica (strain RCB)
GN=Daro_3887 PE=3 SV=1
Length = 97
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 33/58 (56%)
Query: 28 LPSCIRLVPPSSVSITIHAKPGSKSCSITDVSDEAVGVQIDAPAKDGEANAALLEYMS 85
+ R +++T+H +PG+K + +A+ +++ AP DG+AN AL+ +++
Sbjct: 1 MSDWFRQAANGCITLTLHIQPGAKKSEFAGLHGDALKIRLAAPPVDGKANEALIRFIA 58
>sp|B0TGP1|Y2027_HELMI UPF0235 protein Helmi_20270 OS=Heliobacterium modesticaldum
(strain ATCC 51547 / Ice1) GN=Helmi_20270 PE=3 SV=1
Length = 96
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 30/50 (60%)
Query: 36 PPSSVSITIHAKPGSKSCSITDVSDEAVGVQIDAPAKDGEANAALLEYMS 85
P S+ I +P + + + D+A+ V++ AP DGEANAA L++++
Sbjct: 8 PGGSIRFRIRVQPRASKNEVCGLLDDALKVRLTAPPVDGEANAACLQFIA 57
>sp|B8F6W0|Y1504_HAEPS UPF0235 protein HAPS_1504 OS=Haemophilus parasuis serovar 5
(strain SH0165) GN=HAPS_1504 PE=3 SV=1
Length = 97
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 28/51 (54%)
Query: 37 PSSVSITIHAKPGSKSCSITDVSDEAVGVQIDAPAKDGEANAALLEYMSSV 87
P + + I +P + I + D + + I AP DG+ANA LL+Y+S +
Sbjct: 10 PQGIRLRIFLQPKASRDQIVGLHDNELKIAITAPPIDGQANAHLLKYLSKL 60
>sp|Q7VN15|Y778_HAEDU UPF0235 protein HD_0778 OS=Haemophilus ducreyi (strain 35000HP /
ATCC 700724) GN=HD_0778 PE=3 SV=1
Length = 97
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 27/51 (52%)
Query: 37 PSSVSITIHAKPGSKSCSITDVSDEAVGVQIDAPAKDGEANAALLEYMSSV 87
P + + I +P + I + D + V I AP DG ANA LL+Y+S +
Sbjct: 10 PYGIRLRIFLQPKASRDQIVGLHDNELKVAITAPPVDGAANAYLLKYLSKL 60
>sp|Q5P6I2|Y954_AROAE UPF0235 protein AZOSEA09540 OS=Aromatoleum aromaticum (strain
EbN1) GN=AZOSEA09540 PE=3 SV=1
Length = 97
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 33/56 (58%)
Query: 31 CIRLVPPSSVSITIHAKPGSKSCSITDVSDEAVGVQIDAPAKDGEANAALLEYMSS 86
+R S+ +++H +PG+K EA+ +++ AP DG+ANAAL ++++
Sbjct: 3 WLREAADGSLVLSLHVQPGAKKTEFVGPHGEAMKLRLAAPPVDGKANAALTVFLAA 58
>sp|Q54UW1|U235_DICDI UPF0235 protein OS=Dictyostelium discoideum GN=DDB_G0280783 PE=3
SV=1
Length = 124
Score = 37.7 bits (86), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 27/46 (58%)
Query: 40 VSITIHAKPGSKSCSITDVSDEAVGVQIDAPAKDGEANAALLEYMS 85
+ I ++ P SK SI D+ + ++I P DG+AN ++E++S
Sbjct: 32 IKINVNVHPNSKESSIVSFEDQILSLRISEPPIDGKANIGVIEFLS 77
>sp|B0BQW9|Y1398_ACTPJ UPF0235 protein APJL_1398 OS=Actinobacillus pleuropneumoniae
serotype 3 (strain JL03) GN=APJL_1398 PE=3 SV=1
Length = 98
Score = 37.7 bits (86), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 29/55 (52%)
Query: 33 RLVPPSSVSITIHAKPGSKSCSITDVSDEAVGVQIDAPAKDGEANAALLEYMSSV 87
R+ P + + I +P + I + D + + I AP DG ANA LL+Y+S +
Sbjct: 6 RIENPYGIRLRIFLQPKASRDQIVGLHDSELKIAITAPPVDGAANAHLLKYLSKL 60
>sp|B3GYF9|Y1431_ACTP7 UPF0235 protein APP7_1431 OS=Actinobacillus pleuropneumoniae
serotype 7 (strain AP76) GN=APP7_1431 PE=3 SV=1
Length = 97
Score = 37.7 bits (86), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 29/55 (52%)
Query: 33 RLVPPSSVSITIHAKPGSKSCSITDVSDEAVGVQIDAPAKDGEANAALLEYMSSV 87
R+ P + + I +P + I + D + + I AP DG ANA LL+Y+S +
Sbjct: 6 RIENPYGIRLRIFLQPKASRDQIVGLHDSELKIAITAPPVDGAANAHLLKYLSKL 60
>sp|A6VQS7|Y1977_ACTSZ UPF0235 protein Asuc_1977 OS=Actinobacillus succinogenes (strain
ATCC 55618 / 130Z) GN=Asuc_1977 PE=3 SV=1
Length = 98
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 27/46 (58%)
Query: 40 VSITIHAKPGSKSCSITDVSDEAVGVQIDAPAKDGEANAALLEYMS 85
+ + I +P + +I + DE + + I AP DG ANA L++Y+S
Sbjct: 11 IRLRIMLQPKASKDAIIGLHDEELKISITAPPVDGAANAHLIKYLS 56
>sp|Q65VT1|Y322_MANSM UPF0235 protein MS0322 OS=Mannheimia succiniciproducens (strain
MBEL55E) GN=MS0322 PE=3 SV=1
Length = 95
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 26/48 (54%)
Query: 38 SSVSITIHAKPGSKSCSITDVSDEAVGVQIDAPAKDGEANAALLEYMS 85
+ + I +P + I + D+ + + I AP DG ANA LL+Y+S
Sbjct: 9 EGLRLRIFLQPKASRDKIIGIHDDELKIAITAPPVDGAANAHLLKYLS 56
>sp|Q9CLC6|Y1313_PASMU UPF0235 protein PM1313 OS=Pasteurella multocida (strain Pm70)
GN=PM1313 PE=3 SV=1
Length = 99
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 26/48 (54%)
Query: 38 SSVSITIHAKPGSKSCSITDVSDEAVGVQIDAPAKDGEANAALLEYMS 85
+ + I +P + I + D + + I AP DG+ANA LL+++S
Sbjct: 12 EHLRLRIFLQPKASKDQIVGLHDNELKITITAPPIDGQANAHLLKFLS 59
>sp|B0UWD6|Y1819_HAES2 UPF0235 protein HSM_1819 OS=Haemophilus somnus (strain 2336)
GN=HSM_1819 PE=3 SV=1
Length = 99
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 28/47 (59%)
Query: 39 SVSITIHAKPGSKSCSITDVSDEAVGVQIDAPAKDGEANAALLEYMS 85
++ + I +P + + + D A+ + I AP DG+ANA LL+++S
Sbjct: 10 NLRLRIFLQPKASKDHLIGLYDNALKISITAPPIDGQANAHLLKFLS 56
>sp|Q0I525|Y1657_HAES1 UPF0235 protein HS_1657 OS=Haemophilus somnus (strain 129Pt)
GN=HS_1657 PE=3 SV=1
Length = 99
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 28/47 (59%)
Query: 39 SVSITIHAKPGSKSCSITDVSDEAVGVQIDAPAKDGEANAALLEYMS 85
++ + I +P + + + D A+ + I AP DG+ANA LL+++S
Sbjct: 10 NLRLRIFLQPKASKDHLIGLYDNALKISITAPPIDGQANAHLLKFLS 56
>sp|A8FSL7|Y1229_SHESH UPF0235 protein Ssed_1229 OS=Shewanella sediminis (strain
HAW-EB3) GN=Ssed_1229 PE=3 SV=1
Length = 95
Score = 34.3 bits (77), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 26/44 (59%)
Query: 42 ITIHAKPGSKSCSITDVSDEAVGVQIDAPAKDGEANAALLEYMS 85
+ ++ +P + I V E + + I AP DG+ANA L++Y+S
Sbjct: 13 LNLYIQPKASRDQIVGVHGEELKIAITAPPVDGKANAHLIKYLS 56
>sp|A3N228|Y1380_ACTP2 UPF0235 protein APL_1380 OS=Actinobacillus pleuropneumoniae
serotype 5b (strain L20) GN=APL_1380 PE=3 SV=1
Length = 97
Score = 33.9 bits (76), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 28/55 (50%)
Query: 33 RLVPPSSVSITIHAKPGSKSCSITDVSDEAVGVQIDAPAKDGEANAALLEYMSSV 87
R+ P + + I +P + I + D + + I A DG ANA LL+Y+S +
Sbjct: 6 RIENPCGIRLRIFLQPKASRDQIVGLHDNELKIAITALPVDGAANAHLLKYLSKL 60
>sp|B1KIX3|Y1329_SHEWM UPF0235 protein Swoo_1329 OS=Shewanella woodyi (strain ATCC 51908
/ MS32) GN=Swoo_1329 PE=3 SV=1
Length = 95
Score = 33.9 bits (76), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 26/44 (59%)
Query: 42 ITIHAKPGSKSCSITDVSDEAVGVQIDAPAKDGEANAALLEYMS 85
+ ++ +P + I V E + + I AP DG+ANA L++Y+S
Sbjct: 13 LNLYIQPKASRDQIVGVHGEELKIAITAPPVDGKANAHLIKYLS 56
>sp|B4U5M3|Y1378_HYDS0 UPF0235 protein HY04AAS1_1378 OS=Hydrogenobaculum sp. (strain
Y04AAS1) GN=HY04AAS1_1378 PE=3 SV=1
Length = 73
Score = 33.1 bits (74), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 12/44 (27%), Positives = 28/44 (63%)
Query: 42 ITIHAKPGSKSCSITDVSDEAVGVQIDAPAKDGEANAALLEYMS 85
+ + KP +K+ S+ + D+++ + I +P +G+AN L++ +S
Sbjct: 3 LRVKVKPNAKTVSVEQLEDKSLKISIKSPPVNGKANEELIKVLS 46
>sp|Q052F7|Y1291_LEPBL UPF0235 protein LBL_1291 OS=Leptospira borgpetersenii serovar
Hardjo-bovis (strain L550) GN=LBL_1291 PE=3 SV=1
Length = 73
Score = 33.1 bits (74), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 25/47 (53%)
Query: 40 VSITIHAKPGSKSCSITDVSDEAVGVQIDAPAKDGEANAALLEYMSS 86
+ T+ KP SK D +V + + PA +G+AN A++E +S
Sbjct: 1 MKFTVRVKPNSKKIFFRKEEDGSVTIAVREPALEGKANEAVIETISR 47
>sp|Q04TD1|Y1240_LEPBJ UPF0235 protein LBJ_1240 OS=Leptospira borgpetersenii serovar
Hardjo-bovis (strain JB197) GN=LBJ_1240 PE=3 SV=1
Length = 73
Score = 33.1 bits (74), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 25/47 (53%)
Query: 40 VSITIHAKPGSKSCSITDVSDEAVGVQIDAPAKDGEANAALLEYMSS 86
+ T+ KP SK D +V + + PA +G+AN A++E +S
Sbjct: 1 MKFTVRVKPNSKKIFFRKEEDGSVTIAVREPALEGKANEAVIETISR 47
>sp|Q72QP5|Y2068_LEPIC UPF0235 protein LIC_12068 OS=Leptospira interrogans serogroup
Icterohaemorrhagiae serovar copenhageni (strain Fiocruz
L1-130) GN=LIC_12068 PE=3 SV=1
Length = 73
Score = 32.3 bits (72), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 25/46 (54%)
Query: 40 VSITIHAKPGSKSCSITDVSDEAVGVQIDAPAKDGEANAALLEYMS 85
+ T++ KP SK D + + + PA +G+AN A++E +S
Sbjct: 1 MKFTVYVKPNSKKVFFRKEEDGVLTIAVREPALEGKANEAVIESIS 46
>sp|Q8F5E6|Y1736_LEPIN UPF0235 protein LA_1736 OS=Leptospira interrogans serogroup
Icterohaemorrhagiae serovar Lai (strain 56601)
GN=LA_1736 PE=3 SV=1
Length = 73
Score = 32.3 bits (72), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 25/46 (54%)
Query: 40 VSITIHAKPGSKSCSITDVSDEAVGVQIDAPAKDGEANAALLEYMS 85
+ T++ KP SK D + + + PA +G+AN A++E +S
Sbjct: 1 MKFTVYVKPNSKKVFFRKEEDGVLTIAVREPALEGKANEAVIESIS 46
>sp|B3EMY7|Y2066_CHLPB UPF0235 protein Cphamn1_2066 OS=Chlorobium phaeobacteroides
(strain BS1) GN=Cphamn1_2066 PE=3 SV=1
Length = 101
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 22/39 (56%)
Query: 39 SVSITIHAKPGSKSCSITDVSDEAVGVQIDAPAKDGEAN 77
SV +I A+P S IT D ++ V + AP DGEAN
Sbjct: 10 SVFFSIKAQPRSSKSMITGEYDGSIKVNLKAPPVDGEAN 48
>sp|Q0AE64|Y2146_NITEC UPF0235 protein Neut_2146 OS=Nitrosomonas eutropha (strain C91)
GN=Neut_2146 PE=3 SV=1
Length = 99
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/48 (25%), Positives = 28/48 (58%)
Query: 38 SSVSITIHAKPGSKSCSITDVSDEAVGVQIDAPAKDGEANAALLEYMS 85
++ + ++ +PG++ V E + +++ AP DG+AN AL +++
Sbjct: 10 HNLILKLYIQPGARQTEAIGVHGEELKIKLAAPPMDGKANRALAVFLA 57
>sp|C0QR78|Y1406_PERMH UPF0235 protein PERMA_1406 OS=Persephonella marina (strain DSM
14350 / EX-H1) GN=PERMA_1406 PE=3 SV=1
Length = 73
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 10/45 (22%), Positives = 25/45 (55%)
Query: 42 ITIHAKPGSKSCSITDVSDEAVGVQIDAPAKDGEANAALLEYMSS 86
+ + KP +K I ++ + +++ P + G+AN+ ++E +S
Sbjct: 3 VKVKVKPNAKKEEIREIQKDYFEIRVTVPPEKGKANSRVIELLSK 47
>sp|A7MP89|Y387_CROS8 UPF0235 protein ESA_00387 OS=Cronobacter sakazakii (strain ATCC
BAA-894) GN=ESA_00387 PE=3 SV=1
Length = 96
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 27/44 (61%)
Query: 42 ITIHAKPGSKSCSITDVSDEAVGVQIDAPAKDGEANAALLEYMS 85
+ ++ +P + SI + + + V I AP DG+ANA L++Y++
Sbjct: 13 LRLYIQPKASRDSIIGLHGDELKVAITAPPVDGQANAHLVKYLA 56
>sp|B5XU96|Y722_KLEP3 UPF0235 protein KPK_0722 OS=Klebsiella pneumoniae (strain 342)
GN=KPK_0722 PE=3 SV=1
Length = 96
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 27/44 (61%)
Query: 42 ITIHAKPGSKSCSITDVSDEAVGVQIDAPAKDGEANAALLEYMS 85
+ ++ +P + SI V + + V I AP DG+ANA L+++++
Sbjct: 13 LRLYIQPKASRDSIVGVHGDELKVAITAPPVDGQANAHLVKFLA 56
>sp|A8GJ38|Y4033_SERP5 UPF0235 protein Spro_4033 OS=Serratia proteamaculans (strain 568)
GN=Spro_4033 PE=3 SV=1
Length = 96
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 28/47 (59%)
Query: 39 SVSITIHAKPGSKSCSITDVSDEAVGVQIDAPAKDGEANAALLEYMS 85
++I ++ +P + I + + + V I AP DG+ANA L+++++
Sbjct: 10 GLAIRLYIQPKASRDQIVGLHGDELKVAITAPPVDGQANAHLIKFLA 56
>sp|A6TDW3|Y3323_KLEP7 UPF0235 protein KPN78578_33230 OS=Klebsiella pneumoniae subsp.
pneumoniae (strain ATCC 700721 / MGH 78578)
GN=KPN78578_33230 PE=3 SV=1
Length = 96
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 27/44 (61%)
Query: 42 ITIHAKPGSKSCSITDVSDEAVGVQIDAPAKDGEANAALLEYMS 85
+ ++ +P + SI V + + V I AP DG+ANA L+++++
Sbjct: 13 LRLYIQPKASRDSIVGVHGDELKVAITAPPVDGQANAHLVKFLA 56
>sp|Q82X93|Y395_NITEU UPF0235 protein NE0395 OS=Nitrosomonas europaea (strain ATCC
19718 / NBRC 14298) GN=NE0395 PE=3 SV=1
Length = 100
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 11/44 (25%), Positives = 26/44 (59%)
Query: 42 ITIHAKPGSKSCSITDVSDEAVGVQIDAPAKDGEANAALLEYMS 85
+ ++ +PG++ + E + +++ A DG+AN AL E+++
Sbjct: 15 LKLYVQPGARQTEAVGICGEELKIKLAALPVDGKANRALTEFLA 58
>sp|A5F9H9|Y1210_VIBC3 UPF0235 protein VC0395_A0010/VC395_0502 OS=Vibrio cholerae
serotype O1 (strain ATCC 39541 / Ogawa 395 / O395)
GN=VC0395_A0010 PE=3 SV=1
Length = 96
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 27/46 (58%)
Query: 42 ITIHAKPGSKSCSITDVSDEAVGVQIDAPAKDGEANAALLEYMSSV 87
+ ++ +P + SI + E + V I AP DG+ANA L +Y++ +
Sbjct: 13 LRLYIQPKASRDSIVGLHGEELKVAITAPPIDGKANAHLSKYLAKL 58
>sp|A4WE91|Y3359_ENT38 UPF0235 protein Ent638_3359 OS=Enterobacter sp. (strain 638)
GN=Ent638_3359 PE=3 SV=1
Length = 96
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 26/44 (59%)
Query: 42 ITIHAKPGSKSCSITDVSDEAVGVQIDAPAKDGEANAALLEYMS 85
+ ++ +P + SI + + + V I AP DG+ANA L +Y++
Sbjct: 13 LRLYIQPKASRDSIVGLHGDELKVAITAPPVDGQANAHLTKYLA 56
>sp|C3LRX5|Y443_VIBCM UPF0235 protein VCM66_0443 OS=Vibrio cholerae serotype O1 (strain
M66-2) GN=VCM66_0443 PE=3 SV=1
Length = 96
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 27/46 (58%)
Query: 42 ITIHAKPGSKSCSITDVSDEAVGVQIDAPAKDGEANAALLEYMSSV 87
+ ++ +P + SI + E + V I AP DG+ANA L +Y++ +
Sbjct: 13 LRLYIQPKASRDSIVGLHGEELKVAITAPPIDGKANAHLSKYLAKL 58
>sp|Q9KUQ7|Y458_VIBCH UPF0235 protein VC_0458 OS=Vibrio cholerae serotype O1 (strain
ATCC 39315 / El Tor Inaba N16961) GN=VC_0458 PE=3 SV=1
Length = 96
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 27/46 (58%)
Query: 42 ITIHAKPGSKSCSITDVSDEAVGVQIDAPAKDGEANAALLEYMSSV 87
+ ++ +P + SI + E + V I AP DG+ANA L +Y++ +
Sbjct: 13 LRLYIQPKASRDSIVGLHGEELKVAITAPPIDGKANAHLSKYLAKL 58
>sp|Q3M687|Y3894_ANAVT UPF0235 protein Ava_3894 OS=Anabaena variabilis (strain ATCC
29413 / PCC 7937) GN=Ava_3894 PE=3 SV=1
Length = 75
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 24/43 (55%)
Query: 44 IHAKPGSKSCSITDVSDEAVGVQIDAPAKDGEANAALLEYMSS 86
+ KP SK I + D ++ V + +P DG+AN L++ ++
Sbjct: 5 VKVKPNSKQQKIAEQDDGSLTVHLKSPPVDGKANEELIKLLAE 47
>sp|Q8YS95|Y3196_NOSS1 UPF0235 protein asl3196 OS=Nostoc sp. (strain PCC 7120 / UTEX
2576) GN=asl3196 PE=3 SV=1
Length = 75
Score = 30.0 bits (66), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 24/43 (55%)
Query: 44 IHAKPGSKSCSITDVSDEAVGVQIDAPAKDGEANAALLEYMSS 86
+ KP SK I + D ++ V + +P DG+AN L++ ++
Sbjct: 5 VKVKPNSKQQKIAEQDDGSLTVHLKSPPVDGKANEELIKLLAE 47
>sp|B1GYK8|Y618_UNCTG UPF0235 protein TGRD_618 OS=Uncultured termite group 1 bacterium
phylotype Rs-D17 GN=TGRD_618 PE=3 SV=1
Length = 87
Score = 29.6 bits (65), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Query: 42 ITIHAKPGSKSCSITDVSDEAVGVQIDAPAKDGEANAALLEYMS---SVSLNLLFL 94
I + P SK + + V+I APA +G AN L +++S V +++FL
Sbjct: 3 IKVRVIPNSKRNEVVSRVGSILRVKITAPAIEGRANEELCDFLSDFFDVKRSMIFL 58
>sp|A0QYZ8|Y3845_MYCS2 UPF0235 protein MSMEG_3845 OS=Mycobacterium smegmatis (strain
ATCC 700084 / mc(2)155) GN=MSMEG_3845 PE=3 SV=1
Length = 75
Score = 29.6 bits (65), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 13/49 (26%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 39 SVSITIHAKPGSKSCSITDVSDEA-VGVQIDAPAKDGEANAALLEYMSS 86
S ++ + KPGS+ + + +D+ + + + A DG+ANAA+ + +++
Sbjct: 2 SETVVVRVKPGSRKGPLVETADDGTLTIYVQERAVDGKANAAVTKLLAA 50
>sp|A1JPU6|Y3436_YERE8 UPF0235 protein YE3436 OS=Yersinia enterocolitica serotype O:8 /
biotype 1B (strain 8081) GN=YE3436 PE=3 SV=1
Length = 96
Score = 29.6 bits (65), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 12/47 (25%), Positives = 28/47 (59%)
Query: 39 SVSITIHAKPGSKSCSITDVSDEAVGVQIDAPAKDGEANAALLEYMS 85
+++ ++ +P + I + + + V I AP DG+ANA L+++++
Sbjct: 10 GLALRLYIQPKASRDQIVGLHGDELKVAITAPPVDGQANAHLIKFIA 56
>sp|B7UI00|YGGU_ECO27 UPF0235 protein YggU OS=Escherichia coli O127:H6 (strain E2348/69
/ EPEC) GN=yggU PE=3 SV=1
Length = 96
Score = 29.6 bits (65), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 26/44 (59%)
Query: 42 ITIHAKPGSKSCSITDVSDEAVGVQIDAPAKDGEANAALLEYMS 85
+ ++ +P + SI + + V V I AP DG+AN+ L++++
Sbjct: 13 LRLYIQPKASRDSIVGLHGDEVKVAITAPPVDGQANSHLVKFLG 56
>sp|B4THI7|YGGU_SALHS UPF0235 protein YggU OS=Salmonella heidelberg (strain SL476)
GN=yggU PE=3 SV=1
Length = 96
Score = 29.6 bits (65), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 26/44 (59%)
Query: 42 ITIHAKPGSKSCSITDVSDEAVGVQIDAPAKDGEANAALLEYMS 85
+ ++ +P + SI + + V V I AP DG+AN+ L++++
Sbjct: 13 LRLYIQPKASRDSIVGLHGDEVKVAITAPPVDGQANSHLIKFLG 56
>sp|B5F5M7|YGGU_SALA4 UPF0235 protein YggU OS=Salmonella agona (strain SL483) GN=yggU
PE=3 SV=1
Length = 96
Score = 29.6 bits (65), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 26/44 (59%)
Query: 42 ITIHAKPGSKSCSITDVSDEAVGVQIDAPAKDGEANAALLEYMS 85
+ ++ +P + SI + + V V I AP DG+AN+ L++++
Sbjct: 13 LRLYIQPKASRDSIVGLHGDEVKVAITAPPVDGQANSHLIKFLG 56
>sp|B8JFX1|Y1215_ANAD2 UPF0235 protein A2cp1_1215 OS=Anaeromyxobacter dehalogenans
(strain 2CP-1 / ATCC BAA-258) GN=A2cp1_1215 PE=3 SV=1
Length = 95
Score = 29.6 bits (65), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 25/45 (55%)
Query: 42 ITIHAKPGSKSCSITDVSDEAVGVQIDAPAKDGEANAALLEYMSS 86
+ I +P + D + +Q+ AP DG ANAAL+E++++
Sbjct: 13 LEILVQPRASRTRAVGEHDGRLKIQLAAPPVDGAANAALVEFLAA 57
>sp|B5BFQ9|YGGU_SALPK UPF0235 protein YggU OS=Salmonella paratyphi A (strain AKU_12601)
GN=yggU PE=3 SV=1
Length = 96
Score = 29.6 bits (65), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 26/44 (59%)
Query: 42 ITIHAKPGSKSCSITDVSDEAVGVQIDAPAKDGEANAALLEYMS 85
+ ++ +P + SI + + V V I AP DG+AN+ L++++
Sbjct: 13 LRLYIQPKASRDSIVGLHGDEVKVAITAPPVDGQANSHLIKFLG 56
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.309 0.124 0.334
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,921,142
Number of Sequences: 539616
Number of extensions: 1132957
Number of successful extensions: 2507
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 2427
Number of HSP's gapped (non-prelim): 85
length of query: 101
length of database: 191,569,459
effective HSP length: 70
effective length of query: 31
effective length of database: 153,796,339
effective search space: 4767686509
effective search space used: 4767686509
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 55 (25.8 bits)