Query 034200
Match_columns 101
No_of_seqs 126 out of 690
Neff 4.6
Searched_HMMs 46136
Date Fri Mar 29 10:54:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034200.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/034200hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3276 Uncharacterized conser 99.9 5.8E-22 1.3E-26 141.4 7.7 86 1-92 1-86 (125)
2 PRK05090 hypothetical protein; 99.8 8.2E-21 1.8E-25 130.4 7.6 62 29-92 1-62 (95)
3 TIGR00251 conserved hypothetic 99.8 5.7E-20 1.2E-24 124.4 7.9 59 33-93 2-62 (87)
4 PRK04021 hypothetical protein; 99.8 2.4E-19 5.1E-24 122.4 7.7 61 32-94 2-64 (92)
5 PRK00647 hypothetical protein; 99.8 1.7E-19 3.7E-24 124.3 6.7 54 38-92 4-57 (96)
6 PRK01310 hypothetical protein; 99.8 2.9E-19 6.2E-24 124.4 7.4 61 30-92 3-68 (104)
7 PF02594 DUF167: Uncharacteris 99.8 1.4E-19 2.9E-24 119.8 5.5 54 38-92 2-56 (77)
8 PRK01530 hypothetical protein; 99.8 1.5E-18 3.2E-23 121.2 7.0 55 37-92 11-69 (105)
9 COG1872 Uncharacterized conser 99.8 1.2E-18 2.7E-23 121.4 5.2 60 30-91 4-65 (102)
10 COG1451 Predicted metal-depend 84.4 2.4 5.2E-05 32.7 5.0 45 39-87 9-53 (223)
11 PF08968 DUF1885: Domain of un 77.8 2.6 5.7E-05 30.8 2.9 33 59-93 80-117 (130)
12 PF04969 CS: CS domain; Inter 44.0 68 0.0015 18.9 4.3 37 32-69 5-43 (79)
13 cd06463 p23_like Proteins cont 41.5 57 0.0012 19.3 3.7 32 39-70 7-38 (84)
14 cd00298 ACD_sHsps_p23-like Thi 31.2 1E+02 0.0022 17.5 3.5 37 38-74 6-42 (80)
15 KOG2800 Conserved developmenta 30.7 70 0.0015 27.1 3.7 48 38-99 324-371 (389)
16 PF01187 MIF: Macrophage migra 30.5 1.1E+02 0.0024 20.6 4.1 50 41-92 36-90 (114)
17 KOG2617 Citrate synthase [Ener 28.6 33 0.00072 29.7 1.5 19 69-87 286-304 (458)
18 PF09581 Spore_III_AF: Stage I 26.9 1.7E+02 0.0038 20.9 4.8 49 41-92 124-180 (188)
19 cd06467 p23_NUDC_like p23_like 26.4 1.5E+02 0.0033 18.1 4.0 36 32-68 3-39 (85)
20 PF00349 Hexokinase_1: Hexokin 24.7 1.6E+02 0.0035 22.2 4.5 61 25-86 46-115 (206)
21 cd06494 p23_NUDCD2_like p23-li 23.3 1.6E+02 0.0036 19.5 3.8 37 31-68 9-46 (93)
22 cd06493 p23_NUDCD1_like p23_NU 21.1 2.2E+02 0.0048 17.9 4.0 36 32-68 3-39 (85)
No 1
>KOG3276 consensus Uncharacterized conserved protein, contains YggU domain [Function unknown]
Probab=99.86 E-value=5.8e-22 Score=141.40 Aligned_cols=86 Identities=55% Similarity=0.827 Sum_probs=81.7
Q ss_pred CCCcccCcccccCCCCccccCCCCCCCCCcceEEeCCCcEEEEEEEecCCCccccccccCCEEEEEEeCCCCCCHHHHHH
Q 034200 1 MAPAKKGKSKAKSAGSTQSKIKTNDENLPSCIRLVPPSSVSITIHAKPGSKSCSITDVSDEAVGVQIDAPAKDGEANAAL 80 (101)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~v~L~V~VkP~Ak~~~I~g~~~~~LkV~V~ApP~dGKAN~aL 80 (101)
|.|+++|++.+.++.+ +.++.++|+||+.+..|.+.|.||++|||+++.|+++.++.+.|.|.|||.+|+||+||
T Consensus 1 i~pkk~g~s~k~~~t~-----~~~~~~~p~~i~~d~~g~V~i~IhakpgaK~s~It~v~~e~V~V~IaApp~eGeANaeL 75 (125)
T KOG3276|consen 1 VMPKKKGKSTKGAETS-----KVDDKPVPPCISVDTGGLVQIAIHAKPGAKQSAITDVGDEAVGVAIAAPPREGEANAEL 75 (125)
T ss_pred CccccccccccccccC-----CCccCCCCCceEecCCCeEEEEEEecCCccccceeeccccccceEEecCCccchhhHHH
Confidence 6799999999998887 46778899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhccCCce
Q 034200 81 LEYMSSVSLNLL 92 (101)
Q Consensus 81 i~fLAk~~l~vr 92 (101)
++||++. |++|
T Consensus 76 l~ylskv-LgLR 86 (125)
T KOG3276|consen 76 LEYLSKV-LGLR 86 (125)
T ss_pred HHHHHHH-hhhh
Confidence 9999999 9999
No 2
>PRK05090 hypothetical protein; Validated
Probab=99.84 E-value=8.2e-21 Score=130.39 Aligned_cols=62 Identities=23% Similarity=0.390 Sum_probs=58.4
Q ss_pred CcceEEeCCCcEEEEEEEecCCCccccccccCCEEEEEEeCCCCCCHHHHHHHHHHhhccCCce
Q 034200 29 PSCIRLVPPSSVSITIHAKPGSKSCSITDVSDEAVGVQIDAPAKDGEANAALLEYMSSVSLNLL 92 (101)
Q Consensus 29 p~~i~~~~~g~v~L~V~VkP~Ak~~~I~g~~~~~LkV~V~ApP~dGKAN~aLi~fLAk~~l~vr 92 (101)
+.|+++.++ +++|+|+|+|+|++++|.++++++|+|+|+|||+|||||+||++|||+. |++.
T Consensus 1 ~~~~~~~~~-~~~l~i~V~P~A~~~~i~~~~~~~lkv~v~ApPveGkAN~ali~~LAk~-l~v~ 62 (95)
T PRK05090 1 MSAVTWDGD-GLVLRLYIQPKASRDQIVGLHGDELKVAITAPPVDGQANAHLLKFLAKQ-FRVA 62 (95)
T ss_pred CCceEEeCC-eEEEEEEEeeCCCcceeccccCCEEEEEEecCCCCChHHHHHHHHHHHH-hCCC
Confidence 467888776 8999999999999999999999999999999999999999999999999 9976
No 3
>TIGR00251 conserved hypothetical protein TIGR00251.
Probab=99.82 E-value=5.7e-20 Score=124.44 Aligned_cols=59 Identities=25% Similarity=0.425 Sum_probs=54.7
Q ss_pred EEeCCCcEEEEEEEecCCCccccccccC--CEEEEEEeCCCCCCHHHHHHHHHHhhccCCcee
Q 034200 33 RLVPPSSVSITIHAKPGSKSCSITDVSD--EAVGVQIDAPAKDGEANAALLEYMSSVSLNLLF 93 (101)
Q Consensus 33 ~~~~~g~v~L~V~VkP~Ak~~~I~g~~~--~~LkV~V~ApP~dGKAN~aLi~fLAk~~l~vr~ 93 (101)
++.++ +++|.|+|+|+|++++|.++++ ++|+|+|+|||+|||||+||++|||+. |++++
T Consensus 2 ~~~~~-g~~l~v~V~P~A~~~~i~g~~~~~~~Lki~v~ApP~~GkAN~ali~~La~~-l~v~I 62 (87)
T TIGR00251 2 RENDD-GLLIRIYVQPKASKDSIVGYNEWRKRVEVKIKAPPVEGKANRELIKFFGEI-FGVDV 62 (87)
T ss_pred eEeCC-eEEEEEEEeeCCCcceeccccCCCCeEEEEEecCCCCChHHHHHHHHHHHH-hCceE
Confidence 45565 8999999999999999999999 899999999999999999999999999 99843
No 4
>PRK04021 hypothetical protein; Reviewed
Probab=99.79 E-value=2.4e-19 Score=122.40 Aligned_cols=61 Identities=25% Similarity=0.415 Sum_probs=55.6
Q ss_pred eEEeCCCcEEEEEEEecCCCccccccccC--CEEEEEEeCCCCCCHHHHHHHHHHhhccCCceeE
Q 034200 32 IRLVPPSSVSITIHAKPGSKSCSITDVSD--EAVGVQIDAPAKDGEANAALLEYMSSVSLNLLFL 94 (101)
Q Consensus 32 i~~~~~g~v~L~V~VkP~Ak~~~I~g~~~--~~LkV~V~ApP~dGKAN~aLi~fLAk~~l~vr~~ 94 (101)
+++..+ +++|.|+|+|+|++++|.|+++ ++|+|+|+|||+|||||+||++|||+. |++++.
T Consensus 2 ~~~~~~-~v~l~v~v~P~a~~~~i~g~~~~~~~lkv~v~apP~~GkAN~ali~~LAk~-l~~~I~ 64 (92)
T PRK04021 2 LKETKE-GVILQVYVQPKAKENEIEGVDEWRGRLKVKIKAPPVKGKANKELVKFFSKL-LGAEVE 64 (92)
T ss_pred eEEeCC-cEEEEEEEeeCCCcceEccccCCCCEEEEEEecCCCCChHHHHHHHHHHHH-hCCCEE
Confidence 567776 8999999999999999999865 899999999999999999999999999 998543
No 5
>PRK00647 hypothetical protein; Validated
Probab=99.79 E-value=1.7e-19 Score=124.34 Aligned_cols=54 Identities=17% Similarity=0.321 Sum_probs=52.3
Q ss_pred CcEEEEEEEecCCCccccccccCCEEEEEEeCCCCCCHHHHHHHHHHhhccCCce
Q 034200 38 SSVSITIHAKPGSKSCSITDVSDEAVGVQIDAPAKDGEANAALLEYMSSVSLNLL 92 (101)
Q Consensus 38 g~v~L~V~VkP~Ak~~~I~g~~~~~LkV~V~ApP~dGKAN~aLi~fLAk~~l~vr 92 (101)
+.++|.|+|+|+|++++|.++++++|+|+|+|||+|||||+||++|||+. |++.
T Consensus 4 ~~~~l~V~V~P~Ak~~~I~g~~~~~Lkvrv~ApPvdGKAN~ali~~LAk~-l~vp 57 (96)
T PRK00647 4 GFWILEVKVTPKARENKIVGFEGGILKVRVTEVPEKGKANDAVIALLAKF-LSLP 57 (96)
T ss_pred CcEEEEEEEeeCCCcceeccccCCEEEEEEecCCCCChHHHHHHHHHHHH-hCCC
Confidence 57999999999999999999999999999999999999999999999999 9986
No 6
>PRK01310 hypothetical protein; Validated
Probab=99.79 E-value=2.9e-19 Score=124.38 Aligned_cols=61 Identities=21% Similarity=0.356 Sum_probs=55.6
Q ss_pred cceEEeCCCcEEEEEEEecCCCccccccccC-----CEEEEEEeCCCCCCHHHHHHHHHHhhccCCce
Q 034200 30 SCIRLVPPSSVSITIHAKPGSKSCSITDVSD-----EAVGVQIDAPAKDGEANAALLEYMSSVSLNLL 92 (101)
Q Consensus 30 ~~i~~~~~g~v~L~V~VkP~Ak~~~I~g~~~-----~~LkV~V~ApP~dGKAN~aLi~fLAk~~l~vr 92 (101)
.+|++.++ +++|.|+|+|+|++++|.++++ +.|+|+|+|||+|||||+||++|||+. |+|.
T Consensus 3 ~~~~~~~~-~~~i~v~V~P~A~~~~i~g~~~~~~g~~~lkv~v~apPv~GkAN~ali~~LA~~-l~v~ 68 (104)
T PRK01310 3 EPWRYSAD-GLRLAVRLTPRGGRDAIDGIETLADGRAVLKVRVRAVPEGGEANRALIELLAKA-LGVP 68 (104)
T ss_pred CceEECCC-cEEEEEEEeeCCCcceeccccccCCCccEEEEEEecCCCCChHHHHHHHHHHHH-hCCC
Confidence 46788776 8999999999999999999864 389999999999999999999999999 9975
No 7
>PF02594 DUF167: Uncharacterised ACR, YggU family COG1872; InterPro: IPR003746 This entry describes proteins of unknown function. Structures for two of these proteins, YggU from Escherichia coli and MTH637 from the archaea Methanobacterium thermoautotrophicum, have been determined; they have a core 2-layer alpha/beta structure consisting of beta(2)-loop-alpha-beta(2)-alpha [, ].; PDB: 1YH5_A 1N91_A 1JRM_A.
Probab=99.79 E-value=1.4e-19 Score=119.79 Aligned_cols=54 Identities=31% Similarity=0.632 Sum_probs=47.4
Q ss_pred CcEEEEEEEecCCCccccccccCC-EEEEEEeCCCCCCHHHHHHHHHHhhccCCce
Q 034200 38 SSVSITIHAKPGSKSCSITDVSDE-AVGVQIDAPAKDGEANAALLEYMSSVSLNLL 92 (101)
Q Consensus 38 g~v~L~V~VkP~Ak~~~I~g~~~~-~LkV~V~ApP~dGKAN~aLi~fLAk~~l~vr 92 (101)
++++|.|+|+|+|++++|.+++++ +|+|+|+|||+||+||+||++|||++ |+++
T Consensus 2 ~~~~l~v~V~P~ak~~~i~~~~~~~~l~i~v~app~~GkAN~ali~~La~~-l~v~ 56 (77)
T PF02594_consen 2 DGVILSVRVKPGAKRNAIVGVEGDGALKIRVTAPPVDGKANKALIRFLAKA-LGVP 56 (77)
T ss_dssp TEEEEEEECEBSSSS-EEEEE-TTT-EEEEBSTTCCCCCHHHHHHHHHHHH-CT--
T ss_pred CeEEEEEEEEeCCCccccccccCceEEEEEEecCCCcChhHHHHHHHHHHH-hCCC
Confidence 489999999999999999999995 99999999999999999999999999 9986
No 8
>PRK01530 hypothetical protein; Reviewed
Probab=99.76 E-value=1.5e-18 Score=121.22 Aligned_cols=55 Identities=20% Similarity=0.360 Sum_probs=51.4
Q ss_pred CCcEEEEEEEecCCCcccccccc----CCEEEEEEeCCCCCCHHHHHHHHHHhhccCCce
Q 034200 37 PSSVSITIHAKPGSKSCSITDVS----DEAVGVQIDAPAKDGEANAALLEYMSSVSLNLL 92 (101)
Q Consensus 37 ~g~v~L~V~VkP~Ak~~~I~g~~----~~~LkV~V~ApP~dGKAN~aLi~fLAk~~l~vr 92 (101)
.+++.|.|+|+|+|++++|.|++ +++|+|+|+|||+|||||+||++|||+. |+|.
T Consensus 11 ~~gv~l~V~V~P~Akk~~i~g~~~~~~~~~Lki~v~ApPvdGkAN~ali~~LAk~-l~v~ 69 (105)
T PRK01530 11 SHQALLNLKVKPNAKQNLISNFVIINNIPYLKLSIKAIPEQGKANEEIINYLAKE-WKLS 69 (105)
T ss_pred CCcEEEEEEEeeCCCcccccceeccCCCCEEEEEEecCCCCChHHHHHHHHHHHH-hCCC
Confidence 35899999999999999999985 4799999999999999999999999999 9986
No 9
>COG1872 Uncharacterized conserved protein [Function unknown]
Probab=99.75 E-value=1.2e-18 Score=121.36 Aligned_cols=60 Identities=27% Similarity=0.498 Sum_probs=55.8
Q ss_pred cceEEeCCCcEEEEEEEecCCCccccccccCCE--EEEEEeCCCCCCHHHHHHHHHHhhccCCc
Q 034200 30 SCIRLVPPSSVSITIHAKPGSKSCSITDVSDEA--VGVQIDAPAKDGEANAALLEYMSSVSLNL 91 (101)
Q Consensus 30 ~~i~~~~~g~v~L~V~VkP~Ak~~~I~g~~~~~--LkV~V~ApP~dGKAN~aLi~fLAk~~l~v 91 (101)
.+++..++ +++|.|+|+|+|+++.|.|+++++ |+|+|+|||++||||++|++|||+. |++
T Consensus 4 ~~~~~~~~-~~~l~V~V~P~a~~~~i~g~~~~~~~Lkv~i~apP~~GKAN~~li~~Lak~-~~v 65 (102)
T COG1872 4 SAVKELDD-GVLLRVRVKPKAKRDSIVGLDEWRKRLKVRITAPPVDGKANEELIKFLAKT-FGV 65 (102)
T ss_pred hhHhhcCC-ceEEEEEECCCCccCcccceecCcceEEEEEecCCCCcchhHHHHHHHHHH-hCC
Confidence 56677776 899999999999999999998877 9999999999999999999999999 998
No 10
>COG1451 Predicted metal-dependent hydrolase [General function prediction only]
Probab=84.38 E-value=2.4 Score=32.72 Aligned_cols=45 Identities=13% Similarity=0.319 Sum_probs=39.3
Q ss_pred cEEEEEEEecCCCccccccccCCEEEEEEeCCCCCCHHHHHHHHHHhhc
Q 034200 39 SVSITIHAKPGSKSCSITDVSDEAVGVQIDAPAKDGEANAALLEYMSSV 87 (101)
Q Consensus 39 ~v~L~V~VkP~Ak~~~I~g~~~~~LkV~V~ApP~dGKAN~aLi~fLAk~ 87 (101)
+..+.|.+++++++..|.-..++ .|+|.+|| |..++++..||.+.
T Consensus 9 ~~~~~v~~~r~~r~~~i~i~~~~--~v~v~~P~--~~~~~~~~~fl~k~ 53 (223)
T COG1451 9 GLPLEVQVKRRAKRLTIRIPPGG--TVRVSVPP--GLSDEEVENFLAKK 53 (223)
T ss_pred CccEEEEEeecccceeEEecCCC--eEEEEeCC--CCCHHHHHHHHHHH
Confidence 78999999999999999855555 99999999 88899999999875
No 11
>PF08968 DUF1885: Domain of unknown function (DUF1885); InterPro: IPR015062 This family consists of hypothetical proteins produced by bacteria of the Bacillus genus. ; PDB: 1T6A_A.
Probab=77.81 E-value=2.6 Score=30.80 Aligned_cols=33 Identities=21% Similarity=0.355 Sum_probs=21.5
Q ss_pred cCCEEEEEEeCCCC-----CCHHHHHHHHHHhhccCCcee
Q 034200 59 SDEAVGVQIDAPAK-----DGEANAALLEYMSSVSLNLLF 93 (101)
Q Consensus 59 ~~~~LkV~V~ApP~-----dGKAN~aLi~fLAk~~l~vr~ 93 (101)
+.++--|.|.-|+. .|||| |+|+|||+. |.-.|
T Consensus 80 e~e~~~IQv~LP~~AThGDK~KAN-EfckfLAk~-l~~EL 117 (130)
T PF08968_consen 80 ENEQSYIQVVLPDGATHGDKGKAN-EFCKFLAKK-LKGEL 117 (130)
T ss_dssp ETTEEEEEEE--TT--HHHHHHHH-HHHHHHHHH-H-EEE
T ss_pred CCcceEEEEECCCCCccCcchhHH-HHHHHHHHH-hhhee
Confidence 33455677777764 58998 589999998 66554
No 12
>PF04969 CS: CS domain; InterPro: IPR017447 The function of the CS domain is unknown. The CS domain is sometimes found C-terminal to the CHORD domain (IPR007051 from INTERPRO) in metazoan proteins, but occurs separately from the CHORD domain in plants. This association is thought to be indicative of an functional interaction between CS and CHORD domains [].; PDB: 1WGV_A 2KMW_A 2O30_B 1WH0_A 1EJF_A 2RH0_B 1RL1_A 2CR0_A 1WFI_A 2XCM_D ....
Probab=43.96 E-value=68 Score=18.94 Aligned_cols=37 Identities=27% Similarity=0.322 Sum_probs=24.8
Q ss_pred eEEeCCCcEEEEEEEecCC--CccccccccCCEEEEEEeC
Q 034200 32 IRLVPPSSVSITIHAKPGS--KSCSITDVSDEAVGVQIDA 69 (101)
Q Consensus 32 i~~~~~g~v~L~V~VkP~A--k~~~I~g~~~~~LkV~V~A 69 (101)
|.+..+ .+.|.|.++|.- +.+--+.+.+..|.|.+..
T Consensus 5 W~Qt~~-~V~v~i~~~~~~~~~~dv~v~~~~~~l~v~~~~ 43 (79)
T PF04969_consen 5 WYQTDD-EVTVTIPVKPVDISKEDVKVDFTDTSLSVSIKS 43 (79)
T ss_dssp EEEESS-EEEEEEE-TTTTSSGGGEEEEEETTEEEEEEEE
T ss_pred EEECCC-EEEEEEEEcCCCCChHHeEEEEEeeEEEEEEEc
Confidence 445554 799999997774 4444446788888888763
No 13
>cd06463 p23_like Proteins containing this p23_like domain include p23 and its Saccharomyces cerevisiae (Sc) homolog Sba1. Both are co-chaperones for the heat shock protein (Hsp) 90. p23 binds Hsp90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis. Both p23 and Sba1p can regulate telomerase activity. This group includes domains similar to the C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1). Sgt1 interacts with multiple protein complexes and has the features of a co-chaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. This group also includes the p23_like domains of
Probab=41.47 E-value=57 Score=19.33 Aligned_cols=32 Identities=22% Similarity=0.249 Sum_probs=22.5
Q ss_pred cEEEEEEEecCCCccccccccCCEEEEEEeCC
Q 034200 39 SVSITIHAKPGSKSCSITDVSDEAVGVQIDAP 70 (101)
Q Consensus 39 ~v~L~V~VkP~Ak~~~I~g~~~~~LkV~V~Ap 70 (101)
.+.|.|.+....+.+--+.+.++.|.|++...
T Consensus 7 ~v~i~v~~~~~~~~~~~v~~~~~~l~i~~~~~ 38 (84)
T cd06463 7 EVTITIPLKDVTKKDVKVEFTPKSLTVSVKGG 38 (84)
T ss_pred EEEEEEEcCCCCccceEEEEecCEEEEEeeCC
Confidence 68888887766655555566777888887743
No 14
>cd00298 ACD_sHsps_p23-like This domain family includes the alpha-crystallin domain (ACD) of alpha-crystallin-type small heat shock proteins (sHsps) and a similar domain found in p23-like proteins. sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is this ACD. sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps. p23 is a cochaperone of the Hsp90 chaperoning pathway. It binds Hsp90 and participates in the folding of a number of Hsp90 clients including the progesterone receptor. p23 also has a passive chaperoning activity. p23 in addition may act as the cytosolic prostaglandin E2 synthase. Included in this family is the p23-like C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1) and the p23-like domains of human butyrate-induced transcript 1 (hB-ind
Probab=31.22 E-value=1e+02 Score=17.46 Aligned_cols=37 Identities=14% Similarity=0.145 Sum_probs=25.8
Q ss_pred CcEEEEEEEecCCCccccccccCCEEEEEEeCCCCCC
Q 034200 38 SSVSITIHAKPGSKSCSITDVSDEAVGVQIDAPAKDG 74 (101)
Q Consensus 38 g~v~L~V~VkP~Ak~~~I~g~~~~~LkV~V~ApP~dG 74 (101)
+.+.|.|.+..-.+.+--+.+.++.|.|+....+.+.
T Consensus 6 ~~v~i~i~~~~~~~~~i~v~~~~~~l~v~~~~~~~~~ 42 (80)
T cd00298 6 DEVVVTVDLPGVKKEDIKVEVEDNVLTISGKREEEEE 42 (80)
T ss_pred CEEEEEEECCCCCHHHeEEEEECCEEEEEEEEcCCCc
Confidence 3788888887766555444667788888888776544
No 15
>KOG2800 consensus Conserved developmentally regulated protein [General function prediction only]
Probab=30.74 E-value=70 Score=27.10 Aligned_cols=48 Identities=17% Similarity=0.305 Sum_probs=39.9
Q ss_pred CcEEEEEEEecCCCccccccccCCEEEEEEeCCCCCCHHHHHHHHHHhhccCCceeEEEeec
Q 034200 38 SSVSITIHAKPGSKSCSITDVSDEAVGVQIDAPAKDGEANAALLEYMSSVSLNLLFLFSFSN 99 (101)
Q Consensus 38 g~v~L~V~VkP~Ak~~~I~g~~~~~LkV~V~ApP~dGKAN~aLi~fLAk~~l~vr~~~~~~~ 99 (101)
.|++|.|+++|.-=++...++- ||.-++++++|.+..+.|-=+|-|++
T Consensus 324 ~gl~IhiH~TPyQv~D~~R~WI--------------rKE~k~fv~lL~~l~~qVt~~~hfs~ 371 (389)
T KOG2800|consen 324 DGLRIHIHGTPYQVCDELRGWI--------------RKEKKEFVRLLKALTLQVTERFHFSD 371 (389)
T ss_pred cceEEEEecCcchhcchhhhhh--------------hHhHHHHHHHHHHhcccceeeeeccC
Confidence 3799999999998888777654 78889999999988777777888875
No 16
>PF01187 MIF: Macrophage migration inhibitory factor (MIF); InterPro: IPR001398 Macrophage migration inhibitory factor (MIF) is a key regulatory cytokine within innate and adaptive immune responses, capable of promoting and modulating the magnitude of the response []. MIF is released from T-cells and macrophages, and acts within the neuroendocrine system. MIF is capable of tautomerase activity, although its biological function has not been fully characterised. It is induced by glucocorticoid and is capable of overriding the anti-inflammatory actions of glucocorticoid []. MIF regulates cytokine secretion and the expression of receptors involved in the immune response. It can be taken up into target cells in order to interact with intracellular signalling molecules, inhibiting p53 function, and/or activating components of the mitogen-activated protein kinase and Jun-activation domain-binding protein-1 (Jab-1) []. MIF has been linked to various inflammatory diseases, such as rheumatoid arthritis and atherosclerosis []. The MIF homologue D-dopachrome tautomerase (4.1.1.84 from EC) is involved in detoxification through the conversion of dopaminechrome (and possibly norepinephrinechrome), the toxic quinine product of the neurotransmitter dopamine (and norepinephrine), to an indole derivative that can serve as a precursor to neuromelanin [, ].; PDB: 1UIZ_C 3FWT_A 1HFO_F 2WKB_D 3RF4_B 2OS5_A 3RF5_A 2XCZ_A 3FWU_A 3B64_A ....
Probab=30.52 E-value=1.1e+02 Score=20.55 Aligned_cols=50 Identities=24% Similarity=0.347 Sum_probs=32.1
Q ss_pred EEEEEEecCCCccccccccCCEEEEEEeCCCC-CCHHH----HHHHHHHhhccCCce
Q 034200 41 SITIHAKPGSKSCSITDVSDEAVGVQIDAPAK-DGEAN----AALLEYMSSVSLNLL 92 (101)
Q Consensus 41 ~L~V~VkP~Ak~~~I~g~~~~~LkV~V~ApP~-dGKAN----~aLi~fLAk~~l~vr 92 (101)
.|-|.|+++..-. ..|-++...-+.|++.-. +.+.| ++|.+||.+. |+|.
T Consensus 36 ~i~V~v~~~~~m~-fgGs~~P~a~v~l~sig~~~~~~n~~~s~~i~~~l~~~-LgIp 90 (114)
T PF01187_consen 36 YIMVTVEDGQRMS-FGGSDDPAAFVELKSIGGLDPEQNKKYSAAITEFLEEE-LGIP 90 (114)
T ss_dssp GEEEEEEESTEEE-ETTB-SS-EEEEEEESSSSSHHHHHHHHHHHHHHHHHH-HT--
T ss_pred hEEEEeeCCceEE-ECCCCCCEEEEEEEEccCCCHHHHHHHHHHHHHHHHHH-hCCC
Confidence 5677778877554 445566777777777664 44444 6788999999 9885
No 17
>KOG2617 consensus Citrate synthase [Energy production and conversion]
Probab=28.58 E-value=33 Score=29.71 Aligned_cols=19 Identities=26% Similarity=0.450 Sum_probs=16.9
Q ss_pred CCCCCCHHHHHHHHHHhhc
Q 034200 69 APAKDGEANAALLEYMSSV 87 (101)
Q Consensus 69 ApP~dGKAN~aLi~fLAk~ 87 (101)
+-|-+|-||+|+++||.+.
T Consensus 286 aGPLHGlAnqEvl~~L~~~ 304 (458)
T KOG2617|consen 286 AGPLHGLANQEVLRFLGKL 304 (458)
T ss_pred ccccccCchHHHHHHHHHh
Confidence 6799999999999999943
No 18
>PF09581 Spore_III_AF: Stage III sporulation protein AF (Spore_III_AF); InterPro: IPR014245 This family represents the stage III sporulation protein AF (SpoIIIAF) of the bacterial endospore formation program, which exists in some but not all members of the Firmicutes (formerly called low-GC Gram-positives). The C-terminal region of these proteins is poorly conserved.
Probab=26.89 E-value=1.7e+02 Score=20.94 Aligned_cols=49 Identities=16% Similarity=0.356 Sum_probs=30.8
Q ss_pred EEEEEEecCCCcc--ccccccCCEEEEEE------eCCCCCCHHHHHHHHHHhhccCCce
Q 034200 41 SITIHAKPGSKSC--SITDVSDEAVGVQI------DAPAKDGEANAALLEYMSSVSLNLL 92 (101)
Q Consensus 41 ~L~V~VkP~Ak~~--~I~g~~~~~LkV~V------~ApP~dGKAN~aLi~fLAk~~l~vr 92 (101)
.|.|.+++..... ....+ +.+.|.+ ...+.+.+..++|.++||+. +++.
T Consensus 124 ~I~v~l~~~~~~~~~~~~~V--e~V~I~~~~~~~~~~~~~~~~~~~~i~~~la~~-~~i~ 180 (188)
T PF09581_consen 124 EIKVTLSEEEEQKEEAVEPV--EPVEIDIEKESDSSKSPEDSEEEEEIKQYLADF-YGIS 180 (188)
T ss_pred EEEEEEcCCCccccccCCcc--cceEecccccccccccccchHHHHHHHHHHHHH-hCCC
Confidence 4666666654322 12122 2344444 45667778899999999999 8875
No 19
>cd06467 p23_NUDC_like p23_like domain of NUD (nuclear distribution) C and similar proteins. Aspergillus nidulas (An) NUDC is needed for nuclear movement. AnNUDC is localized at the hyphal cortex, and binds NUDF at spindle pole bodies (SPBs) and in the cytoplasm at different stages in the cell cycle. At the SPBs it is part of the dynein molecular motor/NUDF complex that regulates microtubule dynamics. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its ext
Probab=26.37 E-value=1.5e+02 Score=18.11 Aligned_cols=36 Identities=19% Similarity=0.305 Sum_probs=24.0
Q ss_pred eEEeCCCcEEEEEEEecCCCccccc-cccCCEEEEEEe
Q 034200 32 IRLVPPSSVSITIHAKPGSKSCSIT-DVSDEAVGVQID 68 (101)
Q Consensus 32 i~~~~~g~v~L~V~VkP~Ak~~~I~-g~~~~~LkV~V~ 68 (101)
|.+..+ .+.|.|.+.++-....+. .+.++.|.|++.
T Consensus 3 W~Qt~~-~V~i~i~~~~~~~~~dv~v~~~~~~l~v~~~ 39 (85)
T cd06467 3 WTQTLD-EVTVTIPLPEGTKSKDVKVEITPKHLKVGVK 39 (85)
T ss_pred EEeeCC-EEEEEEECCCCCcceeEEEEEEcCEEEEEEC
Confidence 445554 688888887765444443 467788888875
No 20
>PF00349 Hexokinase_1: Hexokinase; InterPro: IPR022672 Hexokinase is an important enzyme that catalyses the ATP-dependent conversion of aldo- and keto-hexose sugars to the hexose-6-phosphate (H6P). The enzyme can catalyse this reaction on glucose, fructose, sorbitol and glucosamine, and as such is the first step in a number of metabolic pathways []. The addition of a phosphate group to the sugar acts to trap it in a cell, since the negatively charged phosphate cannot easily traverse the plasma membrane. The enzyme is widely distributed in eukaryotes. There are three isozymes of hexokinase in yeast (PI, PII and glucokinase): isozymes PI and PII phosphorylate both aldo- and keto-sugars; glucokinase is specific for aldo-hexoses. All three isozymes contain two domains []. Structural studies of yeast hexokinase reveal a well-defined catalytic pocket that binds ATP and hexose, allowing easy transfer of the phosphate from ATP to the sugar []. Vertebrates contain four hexokinase isozymes, designated I to IV, where types I to III contain a duplication of the two-domain yeast-type hexokinases. Both the N- and C-terminal halves bind hexose and H6P, though in types I an III only the C-terminal half supports catalysis, while both halves support catalysis in type II. The N-terminal half is the regulatory region. Type IV hexokinase is similar to the yeast enzyme in containing only the two domains, and is sometimes incorrectly referred to as glucokinase. The different vertebrate isozymes differ in their catalysis, localisation and regulation, thereby contributing to the different patterns of glucose metabolism in different tissues []. Whereas types I to III can phosphorylate a variety of hexose sugars and are inhibited by glucose-6-phosphate (G6P), type IV is specific for glucose and shows no G6P inhibition. Type I enzyme may have a catabolic function, producing H6P for energy production in glycolysis; it is bound to the mitochondrial membrane, which enables the coordination of glycolysis with the TCA cycle. Types II and III enzyme may have anabolic functions, providing H6P for glycogen or lipid synthesis. Type IV enzyme is found in the liver and pancreatic beta-cells, where it is controlled by insulin (activation) and glucagon (inhibition). In pancreatic beta-cells, type IV enzyme acts as a glucose sensor to modify insulin secretion. Mutations in type IV hexokinase have been associated with diabetes mellitus. Hexokinase (2.7.1.1 from EC), a fructose and glucose phosphorylating enzyme, contains two structurally similar domains represented by this family and PF03727 from PFAM. Some hexokinases have two copies of each of these domains. This entry represents the N-terminal domain.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3O1W_A 3O6W_A 3O4W_B 3O08_B 3O80_A 3O5B_A 3O8M_A 3O1B_A 1BG3_A 4DHY_A ....
Probab=24.69 E-value=1.6e+02 Score=22.17 Aligned_cols=61 Identities=13% Similarity=0.297 Sum_probs=29.1
Q ss_pred CCCCCcceEEeCCC---cEEEEEEEecCCCccccccccCC-EEEE--EEeCCCCC---CHHHHHHHHHHhh
Q 034200 25 DENLPSCIRLVPPS---SVSITIHAKPGSKSCSITDVSDE-AVGV--QIDAPAKD---GEANAALLEYMSS 86 (101)
Q Consensus 25 ~~~~p~~i~~~~~g---~v~L~V~VkP~Ak~~~I~g~~~~-~LkV--~V~ApP~d---GKAN~aLi~fLAk 86 (101)
-..+|+|+...++| |..|.|.+=-.-=|-.++.+.++ .+.+ +.-..|.+ |.. ++|.+|+|+
T Consensus 46 l~MlPs~v~~~P~G~E~G~~LalDlGGTnlRv~~V~L~g~~~~~~~~~~~~ip~~~~~~~~-~~lFd~ia~ 115 (206)
T PF00349_consen 46 LKMLPSYVTSLPTGNEKGDFLALDLGGTNLRVALVELSGNGKVEIEQEKYKIPEELMNGSG-EELFDFIAD 115 (206)
T ss_dssp S-EEEESEESSTTSTTEEEEEEEEESSSSEEEEEEEEESSSEEEEEEEEEE--HHHHTSBH-HHHHHHHHH
T ss_pred eeccccccccCCCCCCCceEEEEeecCcEEEEEEEEEcCCCCceeeeccccCChHHhcCCc-ccHHHHHHH
Confidence 45677777654433 45565555333223333333332 1211 22233443 555 888888887
No 21
>cd06494 p23_NUDCD2_like p23-like NUD (nuclear distribution) C-like found in human NUDC domain-containing protein 2 (NUDCD2) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=23.32 E-value=1.6e+02 Score=19.51 Aligned_cols=37 Identities=14% Similarity=0.398 Sum_probs=26.6
Q ss_pred ceEEeCCCcEEEEEEEecCCCccccc-cccCCEEEEEEe
Q 034200 31 CIRLVPPSSVSITIHAKPGSKSCSIT-DVSDEAVGVQID 68 (101)
Q Consensus 31 ~i~~~~~g~v~L~V~VkP~Ak~~~I~-g~~~~~LkV~V~ 68 (101)
.|.+..+ .+.|.|.+.++.+...+. .+..+.|+|.+.
T Consensus 9 ~W~QT~~-eV~v~i~lp~~~~~kdv~V~i~~~~l~V~~~ 46 (93)
T cd06494 9 CWYQTMD-EVFIEVNVPPGTRAKDVKCKLGSRDISLAVK 46 (93)
T ss_pred EEEeEcC-EEEEEEECCCCCceeeEEEEEEcCEEEEEEC
Confidence 3455554 689999888887766554 467789999884
No 22
>cd06493 p23_NUDCD1_like p23_NUDCD1: p23-like NUD (nuclear distribution) C-like domain found in human NUD (nuclear distribution) C domain-containing protein 1, NUDCD1 (also known as CML66), and similar proteins. NUDCD1/CML66 is a broadly immunogenic tumor associated antigen, which is highly expressed in a variety of solid tumors and in leukemias. In normal tissues high expression of NUDCD1/CML66 is limited to testis and heart.
Probab=21.07 E-value=2.2e+02 Score=17.92 Aligned_cols=36 Identities=8% Similarity=0.196 Sum_probs=24.7
Q ss_pred eEEeCCCcEEEEEEEecCCCccccc-cccCCEEEEEEe
Q 034200 32 IRLVPPSSVSITIHAKPGSKSCSIT-DVSDEAVGVQID 68 (101)
Q Consensus 32 i~~~~~g~v~L~V~VkP~Ak~~~I~-g~~~~~LkV~V~ 68 (101)
|.+..+ .+.|.|.+.++.....+. .+..+.|.|.+.
T Consensus 3 W~Qt~~-~V~v~i~~p~~~~~~dv~v~~~~~~l~v~~~ 39 (85)
T cd06493 3 WQQTEE-DLTLTIRLPEDTTKEDIRIKFLPDHISIALK 39 (85)
T ss_pred cEEeCC-EEEEEEECCCCCChhhEEEEEecCEEEEEeC
Confidence 445554 688888887776555444 466688888874
Done!