Query 034200
Match_columns 101
No_of_seqs 126 out of 690
Neff 4.6
Searched_HMMs 29240
Date Mon Mar 25 18:37:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034200.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034200hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1n91_A ORF, hypothetical prote 99.8 5.1E-21 1.7E-25 133.0 6.1 61 30-92 6-66 (108)
2 1jrm_A MTH0637, conserved hypo 99.8 3.3E-20 1.1E-24 127.8 3.7 60 29-90 4-65 (104)
3 1t6a_A Rbstp2229 gene product; 85.7 0.68 2.3E-05 32.6 3.3 36 57-94 74-114 (126)
4 2kl8_A OR15; structural genomi 40.0 56 0.0019 20.9 4.6 37 58-97 37-76 (85)
5 2ayh_A 1,3-1,4-beta-D-glucan 4 36.0 47 0.0016 23.3 4.2 46 29-74 36-86 (214)
6 4hhu_A OR280; engineered prote 28.5 87 0.003 22.3 4.5 37 58-97 119-158 (170)
7 1rl1_A Suppressor of G2 allele 28.3 82 0.0028 19.8 4.1 37 32-70 14-51 (114)
8 4fei_A Heat shock protein-rela 28.3 97 0.0033 19.3 4.4 37 32-70 11-48 (102)
9 3qor_A Nuclear migration prote 28.0 1.3E+02 0.0043 19.6 5.1 43 26-69 14-60 (121)
10 3bpu_A Membrane-associated gua 26.5 92 0.0031 18.2 3.9 45 38-86 27-71 (88)
11 4eld_A MJ16.5-P1, small heat s 24.1 1.1E+02 0.0037 20.7 4.3 39 31-71 60-99 (161)
12 3o5s_A Beta-glucanase; glycosy 22.5 1.1E+02 0.0037 22.3 4.3 46 29-74 60-110 (238)
13 1kwa_A Hcask/LIN-2 protein; PD 22.3 91 0.0031 18.6 3.3 48 39-87 26-73 (88)
14 2hyk_A Beta-1,3-glucanase; fam 21.8 1.5E+02 0.005 21.1 4.8 46 29-74 49-101 (245)
15 3gla_A Low molecular weight he 21.4 1.5E+02 0.0051 18.1 4.6 39 32-72 9-48 (100)
16 2xcm_C SGT1-like protein, cyto 20.9 1.4E+02 0.0048 17.6 4.1 37 32-70 7-44 (92)
17 1wgv_A KIAA1068 protein; CS do 20.7 1.7E+02 0.0056 18.9 4.5 37 32-69 24-62 (124)
18 3gge_A PDZ domain-containing p 20.7 98 0.0034 19.9 3.3 47 41-87 30-76 (95)
No 1
>1n91_A ORF, hypothetical protein; alpha+beta, northeast structural genomics consortium, PSI, P structure initiative, NESG; NMR {Escherichia coli} SCOP: d.206.1.1 PDB: 1yh5_A
Probab=99.83 E-value=5.1e-21 Score=133.01 Aligned_cols=61 Identities=23% Similarity=0.429 Sum_probs=58.3
Q ss_pred cceEEeCCCcEEEEEEEecCCCccccccccCCEEEEEEeCCCCCCHHHHHHHHHHhhccCCce
Q 034200 30 SCIRLVPPSSVSITIHAKPGSKSCSITDVSDEAVGVQIDAPAKDGEANAALLEYMSSVSLNLL 92 (101)
Q Consensus 30 ~~i~~~~~g~v~L~V~VkP~Ak~~~I~g~~~~~LkV~V~ApP~dGKAN~aLi~fLAk~~l~vr 92 (101)
+||++.++ +++|+|+|+|+|++++|.++++++|+|+|+|||+|||||+||++|||+. |+|+
T Consensus 6 ~~~~~~~~-~v~l~v~V~P~A~r~~I~g~~~~~LkV~v~ApP~dGkAN~ali~~LAk~-l~V~ 66 (108)
T 1n91_A 6 SAVTVNDD-GLVLRLYIQPKASRDSIVGLHGDEVKVAITAPPVDGQANSHLVKFLGKQ-FRVA 66 (108)
T ss_dssp CSEEECSS-EEEEEEEEECSSSSCEEEEECSSCEEEECCCCSSHHHHHHHHHHHHHHH-TCCC
T ss_pred ceEEECCC-eEEEEEEEeeCCCcceeecccCCEEEEEEecCCCCChHHHHHHHHHHHH-hCCc
Confidence 58998776 8999999999999999999999999999999999999999999999999 9986
No 2
>1jrm_A MTH0637, conserved hypothetical protein MTH637; alpha-beta protein, structural genomics, OCSP, NESG; NMR {Methanothermobacterthermautotrophicus} SCOP: d.206.1.1
Probab=99.79 E-value=3.3e-20 Score=127.83 Aligned_cols=60 Identities=23% Similarity=0.467 Sum_probs=56.5
Q ss_pred CcceEEeCCCcEEEEEEEecCCCcccccccc--CCEEEEEEeCCCCCCHHHHHHHHHHhhccCC
Q 034200 29 PSCIRLVPPSSVSITIHAKPGSKSCSITDVS--DEAVGVQIDAPAKDGEANAALLEYMSSVSLN 90 (101)
Q Consensus 29 p~~i~~~~~g~v~L~V~VkP~Ak~~~I~g~~--~~~LkV~V~ApP~dGKAN~aLi~fLAk~~l~ 90 (101)
++||++.++ +++|+|+|+|+|++++|.+++ +++|+|+|+|||+|||||+||++|||+. |+
T Consensus 4 m~~~~~~~~-~~~l~v~v~P~A~r~~i~g~~~~~~~lkv~v~ApP~dGkAN~ali~~LAk~-l~ 65 (104)
T 1jrm_A 4 MDCLREVGD-DLLVNIEVSPASGKFGIPSYNEWRKRIEVKIHSPPQKGKANREIIKEFSET-FG 65 (104)
T ss_dssp CCCEEEETT-EEEEEEESCCCSSSCCCCCCCTTTTCCCCCCCTTCCCCCHHHHHHHHHHHH-HS
T ss_pred chhEEECCC-cEEEEEEEeeCCCcceEeeeeccCCEEEEEEecCCCCChHHHHHHHHHHHH-hC
Confidence 479999886 799999999999999999965 9999999999999999999999999999 98
No 3
>1t6a_A Rbstp2229 gene product; structural genomics, hypothetical protein, PSI, protein structure initiative; HET: MSE; 2.05A {Geobacillus stearothermophilus} SCOP: d.129.8.1
Probab=85.70 E-value=0.68 Score=32.64 Aligned_cols=36 Identities=19% Similarity=0.313 Sum_probs=27.7
Q ss_pred cccCCEEEEEEeCCCC-----CCHHHHHHHHHHhhccCCceeE
Q 034200 57 DVSDEAVGVQIDAPAK-----DGEANAALLEYMSSVSLNLLFL 94 (101)
Q Consensus 57 g~~~~~LkV~V~ApP~-----dGKAN~aLi~fLAk~~l~vr~~ 94 (101)
+.+.+.--|.|.-|+. +|||| |+|+|||+. |.-.|+
T Consensus 74 ~~e~~~~fIQi~LP~~AThGDKgKAN-EfckfLAK~-l~geL~ 114 (126)
T 1t6a_A 74 RTAGEETFIDIALPPGATHGDKGKAN-EFSKWLAKT-LGGELH 114 (126)
T ss_dssp EEETTEEEEEEECCTTCCHHHHHHHH-HHHHHHHHH-HCEEEE
T ss_pred cccCCcceEEEECCCCCCcCcchhHH-HHHHHHHHH-hhhhee
Confidence 4466777788888885 68999 589999998 766543
No 4
>2kl8_A OR15; structural genomics, PSI-2, protein structure initiative, de novo protein, ferrodoxin fold; NMR {Artificial gene}
Probab=39.99 E-value=56 Score=20.90 Aligned_cols=37 Identities=11% Similarity=0.316 Sum_probs=28.0
Q ss_pred ccCCEEEEEEeCCCCCCHHHHHH---HHHHhhccCCceeEEEe
Q 034200 58 VSDEAVGVQIDAPAKDGEANAAL---LEYMSSVSLNLLFLFSF 97 (101)
Q Consensus 58 ~~~~~LkV~V~ApP~dGKAN~aL---i~fLAk~~l~vr~~~~~ 97 (101)
++++.|.|+|+..|+ +.-++| .+-||+. ||+.+.|..
T Consensus 37 ldgndleiritgvpe--qvrkelakeaerlake-fnitvtyti 76 (85)
T 2kl8_A 37 LDGNDLEIRITGVPE--QVRKELAKEAERLAKE-FNITVTYTI 76 (85)
T ss_dssp ECSSCEEEEEESCCH--HHHHHHHHHHHHHHHH-TCCEEEEEE
T ss_pred ecCCeeEEEEecChH--HHHHHHHHHHHHHHHh-cCeEEEEEE
Confidence 466889999999995 344444 3568999 999988864
No 5
>2ayh_A 1,3-1,4-beta-D-glucan 4-glucanohydrolase; hydrolase (glucanase); 1.60A {Hybrid} SCOP: b.29.1.2 PDB: 1byh_A 1glh_A 1u0a_A* 1mac_A 1gbg_A
Probab=36.01 E-value=47 Score=23.31 Aligned_cols=46 Identities=7% Similarity=0.079 Sum_probs=27.7
Q ss_pred CcceEEeCCCcEEEEEEEecC-----CCccccccccCCEEEEEEeCCCCCC
Q 034200 29 PSCIRLVPPSSVSITIHAKPG-----SKSCSITDVSDEAVGVQIDAPAKDG 74 (101)
Q Consensus 29 p~~i~~~~~g~v~L~V~VkP~-----Ak~~~I~g~~~~~LkV~V~ApP~dG 74 (101)
|..+...++|.++|.++-.+. ++-..-....-+++++|++.|...|
T Consensus 36 ~~nv~v~~~G~L~i~~~~~~~~~~~s~~i~S~~~f~yG~~E~r~k~p~~~G 86 (214)
T 2ayh_A 36 ANNVNFTNDGKLKLGLTSSAYNKFDCAEYRSTNIYGYGLYEVSMKPAKNTG 86 (214)
T ss_dssp GGGEEECTTSCEEEEEEEEETTEEEEEEEEESSCBCSEEEEEEEECCCCTT
T ss_pred ccCEEEcCCCEEEEEEecCCCCceeeEEEEECCeEeeEEEEEEEEcCCCCe
Confidence 455665554678888876652 2222111234479999999887554
No 6
>4hhu_A OR280; engineered protein, PSI-biology, structural genomi unknown function; HET: AE4 PG4; 2.00A {Synthetic construct}
Probab=28.54 E-value=87 Score=22.26 Aligned_cols=37 Identities=14% Similarity=0.249 Sum_probs=27.9
Q ss_pred ccCCEEEEEEeCCCCCCHHHHHHH---HHHhhccCCceeEEEe
Q 034200 58 VSDEAVGVQIDAPAKDGEANAALL---EYMSSVSLNLLFLFSF 97 (101)
Q Consensus 58 ~~~~~LkV~V~ApP~dGKAN~aLi---~fLAk~~l~vr~~~~~ 97 (101)
+.++.|.|+|+..|+ +.-++|. +-|++. ||+.++|..
T Consensus 119 l~gn~l~i~itgvpe--qvrkelakeaerl~~e-fni~v~y~i 158 (170)
T 4hhu_A 119 LSGNRLVIVITGVPE--QVRKELAKEAERLKAE-FNINVQYQI 158 (170)
T ss_dssp ECSSEEEEEEESCCH--HHHHHHHHHHHHHHHH-HTCEEEEEE
T ss_pred EeCCEEEEEEeCCcH--HHHHHHHHHHHHHHHh-cceEEEEEE
Confidence 366899999999995 3444443 467888 999999864
No 7
>1rl1_A Suppressor of G2 allele of SKP1 homolog; beta sandwich, 7 beta strands, similar to P23, lacking LAST beta strand SEEN in P23, protein degradation; NMR {Homo sapiens} SCOP: b.15.1.3
Probab=28.31 E-value=82 Score=19.79 Aligned_cols=37 Identities=16% Similarity=0.194 Sum_probs=25.6
Q ss_pred eEEeCCCcEEEEEEEecCCCc-cccccccCCEEEEEEeCC
Q 034200 32 IRLVPPSSVSITIHAKPGSKS-CSITDVSDEAVGVQIDAP 70 (101)
Q Consensus 32 i~~~~~g~v~L~V~VkP~Ak~-~~I~g~~~~~LkV~V~Ap 70 (101)
|.+..+ .+.|.|.+. +.+. +--+.+.++.|.|.+..+
T Consensus 14 W~Qt~~-~V~v~i~l~-~v~~~~v~v~~~~~~l~v~~~~~ 51 (114)
T 1rl1_A 14 WYQTES-QVVITLMIK-NVQKNDVNVEFSEKELSALVKLP 51 (114)
T ss_dssp EEECSS-EEEEEECCC-SCCGGGEEEECSSSCEEEEEECT
T ss_pred EEeCCC-EEEEEEEeC-CCCHHHCEEEEEcCEEEEEEEeC
Confidence 445554 799999986 6554 334467788999998763
No 8
>4fei_A Heat shock protein-related protein; stress response, alpha-crystallin domain fold, aggregates, C chaperone; 2.40A {Deinococcus radiodurans}
Probab=28.25 E-value=97 Score=19.29 Aligned_cols=37 Identities=14% Similarity=0.263 Sum_probs=27.4
Q ss_pred eEEeCCCcEEEEEEEecCCCccccc-cccCCEEEEEEeCC
Q 034200 32 IRLVPPSSVSITIHAKPGSKSCSIT-DVSDEAVGVQIDAP 70 (101)
Q Consensus 32 i~~~~~g~v~L~V~VkP~Ak~~~I~-g~~~~~LkV~V~Ap 70 (101)
|...++ .++|.+.+ ||-+++.|. .++++.|.|+-.-.
T Consensus 11 i~e~~~-~~~v~~~l-PG~~~edi~v~~~~~~L~I~g~~~ 48 (102)
T 4fei_A 11 WRDAGT-HLDLLLDV-PGVDAGTLALAEDGGQLTVSGERP 48 (102)
T ss_dssp EEEETT-EEEEEEEC-TTCCGGGCEEEEETTEEEEEEEEC
T ss_pred EEEcCC-EEEEEEEC-CCCchHhEEEEEECCEEEEEEEEe
Confidence 445554 78888887 899888776 46788888876653
No 9
>3qor_A Nuclear migration protein NUDC; beta-sandwich, chaperone, protein cell cycle; HET: OCS; 1.75A {Homo sapiens} PDB: 3qor_B* 2cr0_A
Probab=27.99 E-value=1.3e+02 Score=19.60 Aligned_cols=43 Identities=12% Similarity=0.169 Sum_probs=28.1
Q ss_pred CCCCcc-eEEeCCCcEEEEEEEecC--C-CccccccccCCEEEEEEeC
Q 034200 26 ENLPSC-IRLVPPSSVSITIHAKPG--S-KSCSITDVSDEAVGVQIDA 69 (101)
Q Consensus 26 ~~~p~~-i~~~~~g~v~L~V~VkP~--A-k~~~I~g~~~~~LkV~V~A 69 (101)
.+.|.+ |.+.. ..+.|.|.+.++ . +++-.+.+..+.|.|.++.
T Consensus 14 ~~~~~y~W~Qt~-~eV~v~V~lp~~~~~~~kdv~V~i~~~~l~v~~kg 60 (121)
T 3qor_A 14 ADLPNYRWTQTL-SELDLAVPFCVNFRLKGKDMVVDIQRRHLRVGLKG 60 (121)
T ss_dssp CBCSSCEEEECS-SEEEEEEECCCSSCCCGGGEEEEEETTEEEEEETT
T ss_pred CcCCCEEEEEcc-ceEEEEEECCCCCcccccceEEEEEcCEEEEEEcC
Confidence 344433 34444 479999998876 3 3444456888999998874
No 10
>3bpu_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; structural genomi consortium, SGC, ATP-binding, cell junction; 1.60A {Homo sapiens}
Probab=26.48 E-value=92 Score=18.20 Aligned_cols=45 Identities=4% Similarity=0.117 Sum_probs=33.4
Q ss_pred CcEEEEEEEecCCCccccccccCCEEEEEEeCCCCCCHHHHHHHHHHhh
Q 034200 38 SSVSITIHAKPGSKSCSITDVSDEAVGVQIDAPAKDGEANAALLEYMSS 86 (101)
Q Consensus 38 g~v~L~V~VkP~Ak~~~I~g~~~~~LkV~V~ApP~dGKAN~aLi~fLAk 86 (101)
+++++.. | |++... .++..+-..++|.-.++.+...+++++.|.+
T Consensus 27 ~~~~v~~-v-~~spA~--aGl~~GD~I~~vng~~v~~~~~~~~~~~l~~ 71 (88)
T 3bpu_A 27 GGQRVKQ-I-VDSPRS--RGLKEGDLIVEVNKKNVQALTHNQVVDMLVE 71 (88)
T ss_dssp SSEEEEE-C-CC--CC--TTCCTTCEEEEETTEECTTSCHHHHHHHHHT
T ss_pred CcEEEEE-e-cCChhH--hCCCCCCEEEEECCEEcCCCCHHHHHHHHHh
Confidence 3566655 5 776655 5788888889999999998877888888864
No 11
>4eld_A MJ16.5-P1, small heat shock protein HSP16.5; chaperone; 2.70A {Methanocaldococcus jannaschii} PDB: 1shs_A
Probab=24.14 E-value=1.1e+02 Score=20.68 Aligned_cols=39 Identities=10% Similarity=0.194 Sum_probs=29.3
Q ss_pred ceEEeCCCcEEEEEEEecCCCccccc-cccCCEEEEEEeCCC
Q 034200 31 CIRLVPPSSVSITIHAKPGSKSCSIT-DVSDEAVGVQIDAPA 71 (101)
Q Consensus 31 ~i~~~~~g~v~L~V~VkP~Ak~~~I~-g~~~~~LkV~V~ApP 71 (101)
-|...++ .++|.+.+ ||-+++.|. .++++.|.|+-....
T Consensus 60 di~e~~~-~~~v~~dl-PG~~~edi~V~~~~~~L~I~g~~~~ 99 (161)
T 4eld_A 60 SIIEGDQ-HIKVIAWL-PGVNKEDIILNAVGDTLEIRAKRSP 99 (161)
T ss_dssp EEEECSS-EEEEEEEC-TTCCGGGEEEEEETTEEEEEEECCC
T ss_pred eEEEeCC-EEEEEEEC-CCCChHhEEEEEECCEEEEEEEEcc
Confidence 3444454 78999988 998888776 467899999877655
No 12
>3o5s_A Beta-glucanase; glycosyl hydrolase, beta-jelly roll, hydrolase; HET: B3P; 2.20A {Bacillus subtilis} PDB: 3d6e_A
Probab=22.46 E-value=1.1e+02 Score=22.35 Aligned_cols=46 Identities=7% Similarity=0.162 Sum_probs=26.8
Q ss_pred CcceEEeCCCcEEEEEEEecCC-----CccccccccCCEEEEEEeCCCCCC
Q 034200 29 PSCIRLVPPSSVSITIHAKPGS-----KSCSITDVSDEAVGVQIDAPAKDG 74 (101)
Q Consensus 29 p~~i~~~~~g~v~L~V~VkP~A-----k~~~I~g~~~~~LkV~V~ApP~dG 74 (101)
|..+...++|.++|.++-.+.. +-..-....-++++++++.|...|
T Consensus 60 ~~nv~v~~~G~L~l~~~~~~~~~~ts~~i~S~~~~~yG~~e~r~K~p~~~G 110 (238)
T 3o5s_A 60 ANNVSMTSLGEMRLALTSPAYNKFDCGENRSVQTYGYGLYEVRMKPAKNTG 110 (238)
T ss_dssp GGGEEECTTSCEEEEEEEEETTEEEEEEEEESSCBCSEEEEEEEECCCSTT
T ss_pred CCCEEEeCCCEEEEEEEeCCCCceeEEEEEEcCeEccEEEEEEEEeCCCCc
Confidence 4556666656677777655531 111111233478999999776544
No 13
>1kwa_A Hcask/LIN-2 protein; PDZ domain, neurexin, syndecan, receptor clustering, kinase; 1.93A {Homo sapiens} SCOP: b.36.1.1
Probab=22.26 E-value=91 Score=18.57 Aligned_cols=48 Identities=6% Similarity=-0.004 Sum_probs=37.2
Q ss_pred cEEEEEEEecCCCccccccccCCEEEEEEeCCCCCCHHHHHHHHHHhhc
Q 034200 39 SVSITIHAKPGSKSCSITDVSDEAVGVQIDAPAKDGEANAALLEYMSSV 87 (101)
Q Consensus 39 ~v~L~V~VkP~Ak~~~I~g~~~~~LkV~V~ApP~dGKAN~aLi~fLAk~ 87 (101)
++.| .+|.|++....-.++..+-..+.|.-.++.|.-.+++.++|...
T Consensus 26 ~~~I-~~V~~gspA~~~agL~~GD~I~~Ing~~v~~~~~~~~~~~l~~~ 73 (88)
T 1kwa_A 26 HCIV-ARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLREM 73 (88)
T ss_dssp GEEE-EEECTTSHHHHHTCCCTTCEEEEETTEEGGGSCHHHHHHHHHHC
T ss_pred CEEE-EEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHhcC
Confidence 4444 58889877766455666666789999999998889999999876
No 14
>2hyk_A Beta-1,3-glucanase; family 16, beta-jelly roll, bacterial endo-beta-1,3-glucanas hydrolase; 1.30A {Nocardiopsis SP} PDB: 3atg_A
Probab=21.79 E-value=1.5e+02 Score=21.14 Aligned_cols=46 Identities=17% Similarity=0.161 Sum_probs=26.6
Q ss_pred CcceEEeCCCcEEEEEEEecCCCcc--ccc-----cccCCEEEEEEeCCCCCC
Q 034200 29 PSCIRLVPPSSVSITIHAKPGSKSC--SIT-----DVSDEAVGVQIDAPAKDG 74 (101)
Q Consensus 29 p~~i~~~~~g~v~L~V~VkP~Ak~~--~I~-----g~~~~~LkV~V~ApP~dG 74 (101)
|..+...++|.++|..+-.++...+ .|. ...-+.+++|++.|...|
T Consensus 49 ~~n~~v~~~G~L~I~~~~~~~~~~~S~~i~S~~~f~~~yG~~E~r~klp~g~G 101 (245)
T 2hyk_A 49 RANSALDGNGNLVITARQEADGGYTSARLTTQNKVQPQYGRVEASIQIPRGQG 101 (245)
T ss_dssp TTTEEECSSSCEEEEEEECTTSCEEECEEECTTTCCCCSEEEEEEEECCCSTT
T ss_pred ccceEEecCCEEEEEEEecCCCCEEEEEEEccCcccccCCeEEEEEEcCCCCc
Confidence 3455555556788877766522111 121 123378999999987544
No 15
>3gla_A Low molecular weight heat shock protein; HSPA, SHP, SHSP, high resolution, stress response, chaperone; 1.64A {Xanthomonas axonopodis PV} PDB: 3gt6_A 3guf_A
Probab=21.38 E-value=1.5e+02 Score=18.06 Aligned_cols=39 Identities=10% Similarity=0.214 Sum_probs=27.8
Q ss_pred eEEeCCCcEEEEEEEecCCCccccc-cccCCEEEEEEeCCCC
Q 034200 32 IRLVPPSSVSITIHAKPGSKSCSIT-DVSDEAVGVQIDAPAK 72 (101)
Q Consensus 32 i~~~~~g~v~L~V~VkP~Ak~~~I~-g~~~~~LkV~V~ApP~ 72 (101)
|...+ ..++|.+.+ ||.+++.|. .++++.|.|+-.....
T Consensus 9 i~e~~-~~~~v~~~l-PG~~~edi~v~~~~~~L~I~g~~~~~ 48 (100)
T 3gla_A 9 IKEEV-NHFVLYADL-PGIDPSQIEVQMDKGILSIRGERKSE 48 (100)
T ss_dssp EEECS-SEEEEEEEC-TTSCGGGCEEEEETTEEEEEEEECCG
T ss_pred EEECC-CEEEEEEEC-CCCCHHHEEEEEECCEEEEEEEEcCc
Confidence 34444 378888887 898888776 4677888888765543
No 16
>2xcm_C SGT1-like protein, cytosolic heat shock protein 90; chaperone-protein binding complex, stress response; HET: ADP; 2.20A {Arabidopsis thaliana} PDB: 2jki_S*
Probab=20.86 E-value=1.4e+02 Score=17.64 Aligned_cols=37 Identities=24% Similarity=0.360 Sum_probs=24.7
Q ss_pred eEEeCCCcEEEEEEEecCCC-ccccccccCCEEEEEEeCC
Q 034200 32 IRLVPPSSVSITIHAKPGSK-SCSITDVSDEAVGVQIDAP 70 (101)
Q Consensus 32 i~~~~~g~v~L~V~VkP~Ak-~~~I~g~~~~~LkV~V~Ap 70 (101)
|.+..+ .+.|.|.+ |+.. .+-.+.+.++.|.|.+..+
T Consensus 7 W~Qt~~-~V~v~i~~-~~v~~~~v~v~~~~~~l~v~~~~~ 44 (92)
T 2xcm_C 7 YYQKPE-EVVVTVFA-KGIPKQNVNIDFGEQILSVVIEVP 44 (92)
T ss_dssp EEEETT-EEEEEEEC-CSCCGGGEEEEECSSBEEEEECCT
T ss_pred EEeCCC-EEEEEEEE-CCCChHHeEEEEECCEEEEEEEcC
Confidence 444454 78999987 4543 3444467888999988753
No 17
>1wgv_A KIAA1068 protein; CS domain, HSP20-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.15.1.4
Probab=20.74 E-value=1.7e+02 Score=18.93 Aligned_cols=37 Identities=8% Similarity=0.031 Sum_probs=26.1
Q ss_pred eEEeCCCcEEEEEEEecCC-C-ccccccccCCEEEEEEeC
Q 034200 32 IRLVPPSSVSITIHAKPGS-K-SCSITDVSDEAVGVQIDA 69 (101)
Q Consensus 32 i~~~~~g~v~L~V~VkP~A-k-~~~I~g~~~~~LkV~V~A 69 (101)
|.+.. ..+.|.|.|.++. + ++-.+.+..+.|.|.++.
T Consensus 24 W~Qt~-~~V~i~I~lp~~~~~~kdv~V~i~~~~l~v~~~~ 62 (124)
T 1wgv_A 24 WSQDY-TDLEVRVPVPKHVVKGKQVSVALSSSSIRVAMLE 62 (124)
T ss_dssp EEEET-TEEEEEEECCTTCCSGGGEEEEECSSEEEEEEEC
T ss_pred EEEcc-cEEEEEEEcCCCCCchhheEEEEEcCEEEEEEEc
Confidence 34444 3799999988775 3 444456788999999875
No 18
>3gge_A PDZ domain-containing protein GIPC2; structural genomics, structural genomics consort protein binding; 2.60A {Homo sapiens}
Probab=20.68 E-value=98 Score=19.92 Aligned_cols=47 Identities=11% Similarity=0.033 Sum_probs=38.4
Q ss_pred EEEEEEecCCCccccccccCCEEEEEEeCCCCCCHHHHHHHHHHhhc
Q 034200 41 SITIHAKPGSKSCSITDVSDEAVGVQIDAPAKDGEANAALLEYMSSV 87 (101)
Q Consensus 41 ~L~V~VkP~Ak~~~I~g~~~~~LkV~V~ApP~dGKAN~aLi~fLAk~ 87 (101)
.+--++.|++-.+....+.-+-..+.|....+.|.-+.+++++|.+.
T Consensus 30 ~~I~rI~~gg~a~r~g~L~vGD~I~~VNG~~v~g~~h~evv~lLk~~ 76 (95)
T 3gge_A 30 AFIKRIKDGGVIDSVKTICVGDHIESINGENIVGWRHYDVAKKLKEL 76 (95)
T ss_dssp CEEEEECTTSHHHHCTTCCTTCEEEEETTEECTTCCHHHHHHHHHHS
T ss_pred EEEEEEcCCChHHhcCCCCCCCEEEEECCEEccCCCHHHHHHHHHhC
Confidence 34457888876666666677777899999999999999999999885
Done!